Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 65 of 168
Found at i:18807124 original size:25 final size:25
Alignment explanation
Indices: 18807079--18807129 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
18807069 ACTCTTCTCA
* *
18807079 TCTCTTCACTTCTCTCTCATTTTTC
1 TCTCTTCACTTCCCTCTCATTATTC
*
18807104 TCTCTTCATTTCCCT-TCCATTATTC
1 TCTCTTCACTTCCCTCT-CATTATTC
18807129 T
1 T
18807130 TCATTCCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.10, C:0.35, G:0.00, T:0.55
Consensus pattern (25 bp):
TCTCTTCACTTCCCTCTCATTATTC
Found at i:18807387 original size:20 final size:18
Alignment explanation
Indices: 18807354--18807390 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
18807344 TGTGATGTTG
18807354 ATATATTTAATTTAATTA
1 ATATATTTAATTTAATTA
18807372 ATATGATTTAAATTTAATT
1 ATAT-ATTT-AATTTAATT
18807391 TGTGTTAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
ATATATTTAATTTAATTA
Found at i:18817450 original size:12 final size:12
Alignment explanation
Indices: 18817430--18817459 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
18817420 TGAGACACAC
*
18817430 GCCCATGTCCCA
1 GCCCGTGTCCCA
18817442 GCCCGTGTCCCA
1 GCCCGTGTCCCA
18817454 GCCCGT
1 GCCCGT
18817460 ATCCTTACCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.50, G:0.23, T:0.17
Consensus pattern (12 bp):
GCCCGTGTCCCA
Found at i:18819376 original size:35 final size:35
Alignment explanation
Indices: 18819329--18819398 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
18819319 CTCATTCAAG
*
18819329 AACATTCATGGCAAGTCCCTCAACTTTTAACAGTT
1 AACATTCATGGCAAGTCCCTCAACCTTTAACAGTT
* *
18819364 AACATTCTTGGCAAGTCCCTTAACCTTTAACAGTT
1 AACATTCATGGCAAGTCCCTCAACCTTTAACAGTT
18819399 TTGCAAATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (35 bp):
AACATTCATGGCAAGTCCCTCAACCTTTAACAGTT
Found at i:18820397 original size:8 final size:8
Alignment explanation
Indices: 18820386--18820416 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
18820376 TATATTGTTA
18820386 TATTATAT
1 TATTATAT
*
18820394 TATTATAA
1 TATTATAT
18820402 TATTATAT
1 TATTATAT
18820410 TATTATA
1 TATTATA
18820417 ATAATAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TATTATAT
Found at i:18820404 original size:16 final size:16
Alignment explanation
Indices: 18820385--18820419 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
18820375 GTATATTGTT
18820385 ATATTATATTATTATA
1 ATATTATATTATTATA
18820401 ATATTATATTATTATA
1 ATATTATATTATTATA
18820417 ATA
1 ATA
18820420 ATAAAACAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATATTATATTATTATA
Found at i:18834300 original size:26 final size:25
Alignment explanation
Indices: 18834247--18834302 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
18834237 ATTTTATGTT
*
18834247 TATTTTTTAAATTATTAAAATATTA
1 TATTTTTTAAATTATTAAAATATCA
18834272 TATTTTTTAATATTATTAAACATA-CA
1 TATTTTTTAA-ATTATTAAA-ATATCA
18834298 TATTT
1 TATTT
18834303 AATTATTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 10 0.36
26 15 0.54
27 3 0.11
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (25 bp):
TATTTTTTAAATTATTAAAATATCA
Found at i:18834374 original size:16 final size:16
Alignment explanation
Indices: 18834354--18834390 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
18834344 ATAATTCATT
18834354 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
18834371 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
18834386 TAATA
1 TAATA
18834391 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:18834441 original size:15 final size:15
Alignment explanation
Indices: 18834423--18834479 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
18834413 ATTAAATATT
18834423 AATATTTTAATAATA
1 AATATTTTAATAATA
*
18834438 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
18834457 AATATATTAATAATA
1 AATATTTTAATAATA
*
18834472 AATGTTTT
1 AATATTTT
18834480 GTAACACTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:18838719 original size:2 final size:2
Alignment explanation
Indices: 18838712--18838786 Score: 141
Period size: 2 Copynumber: 37.5 Consensus size: 2
18838702 CAAATGCACG
18838712 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
18838754 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18838787 TGGAATACAA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (2 bp):
TA
Found at i:18841374 original size:18 final size:18
Alignment explanation
Indices: 18841351--18841390 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
18841341 AAATTATTAA
18841351 ATTTATTT-TATTATATAT
1 ATTTATTTATATT-TATAT
18841369 ATTTATTTATATTTATAT
1 ATTTATTTATATTTATAT
18841387 ATTT
1 ATTT
18841391 GTTCGTTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTTATTTATATTTATAT
Found at i:18847793 original size:53 final size:53
Alignment explanation
Indices: 18847713--18847818 Score: 185
Period size: 53 Copynumber: 2.0 Consensus size: 53
18847703 TCTTAAACCA
* *
18847713 AGATTTTCTGATATTGACTCACCAATCCTACTGCAAAATAGATTTATGGATGT
1 AGATTTTCTAATATTGACTCACCAATCCTACTGCAAAACAGATTTATGGATGT
*
18847766 AGATTTTCTAATATTGACTCACCAATCCTACTGCAAAACAGATTTTTGGATGT
1 AGATTTTCTAATATTGACTCACCAATCCTACTGCAAAACAGATTTATGGATGT
18847819 GTGCACAACA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (53 bp):
AGATTTTCTAATATTGACTCACCAATCCTACTGCAAAACAGATTTATGGATGT
Found at i:18852800 original size:60 final size:60
Alignment explanation
Indices: 18852728--18852849 Score: 219
Period size: 60 Copynumber: 2.0 Consensus size: 60
18852718 ATTTTCCTAC
18852728 GATCACTTCGATGATCAATGT-AATCTCCGAGATTCAGTCTAAACTTCTAGGCTGGGTTTT
1 GATCACTTCGATGATCAATGTGAA-CTCCGAGATTCAGTCTAAACTTCTAGGCTGGGTTTT
*
18852788 GATCACTTCGATGATCAATGTGAACTCCGAGATTCAGTTTAAACTTCTAGGCTGGGTTTT
1 GATCACTTCGATGATCAATGTGAACTCCGAGATTCAGTCTAAACTTCTAGGCTGGGTTTT
18852848 GA
1 GA
18852850 GGTGTTATAA
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
60 58 0.97
61 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.34
Consensus pattern (60 bp):
GATCACTTCGATGATCAATGTGAACTCCGAGATTCAGTCTAAACTTCTAGGCTGGGTTTT
Found at i:18853185 original size:22 final size:22
Alignment explanation
Indices: 18853126--18853187 Score: 97
Period size: 22 Copynumber: 2.8 Consensus size: 22
18853116 GTAATCCTTT
**
18853126 TACTAAGCTCTCATGGCTAACG
1 TACTAAGCTCTCATGTTTAACG
*
18853148 TACTAAGCTCTCATGTTTCACG
1 TACTAAGCTCTCATGTTTAACG
18853170 TACTAAGCTCTCATGTTT
1 TACTAAGCTCTCATGTTT
18853188 GAACAATAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (22 bp):
TACTAAGCTCTCATGTTTAACG
Found at i:18853338 original size:12 final size:12
Alignment explanation
Indices: 18853316--18853345 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
18853306 AATGAAGCTT
18853316 AAAGTGTAAGCGC
1 AAAG-GTAAGCGC
18853329 AAAGGTAAGCGC
1 AAAGGTAAGCGC
18853341 AAAGG
1 AAAGG
18853346 CTATGCCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.43, C:0.13, G:0.33, T:0.10
Consensus pattern (12 bp):
AAAGGTAAGCGC
Found at i:18855302 original size:10 final size:10
Alignment explanation
Indices: 18855287--18855375 Score: 64
Period size: 10 Copynumber: 9.0 Consensus size: 10
18855277 AAAAAAATCT
18855287 TTTAATATAA
1 TTTAATATAA
18855297 TTTAATATAA
1 TTTAATATAA
18855307 ---AATAT--
1 TTTAATATAA
* *
18855312 GTTAA-ATAT
1 TTTAATATAA
18855321 TTTAATATAA
1 TTTAATATAA
18855331 TTTAATATAA
1 TTTAATATAA
*
18855341 TTTAATGTAAAAA
1 TTTAA--T-ATAA
18855354 CTTTTAATATAA
1 --TTTAATATAA
18855366 TTTAATATAA
1 TTTAATATAA
18855376 AATATTATTT
Statistics
Matches: 64, Mismatches: 4, Indels: 22
0.71 0.04 0.24
Matches are distributed among these distances:
7 7 0.11
8 2 0.03
9 4 0.06
10 38 0.59
12 4 0.06
13 4 0.06
15 5 0.08
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.47
Consensus pattern (10 bp):
TTTAATATAA
Found at i:18855366 original size:35 final size:35
Alignment explanation
Indices: 18855279--18855450 Score: 149
Period size: 34 Copynumber: 4.9 Consensus size: 35
18855269 AGGGAAATAA
18855279 AAAAATCTTTTAATATAATTTAATATAAAATATGTT
1 AAAAA-CTTTTAATATAATTTAATATAAAATATGTT
* **
18855315 AAATA-TTTTAATATAATTTAATATAATTTAATG-T
1 AAAAACTTTTAATATAATTTAATATAAAAT-ATGTT
*
18855349 AAAAACTTTTAATATAATTTAATATAAAATATTATTT
1 AAAAACTTTTAATATAATTTAATATAAAATA-T-GTT
** * * *
18855386 CCAAA-TTTTAGA-A-AATATAAAAATAAAATATTTT
1 AAAAACTTTTA-ATATAAT-TTAATATAAAATATGTT
* *
18855420 AAATA-TTTTAATATAATTTAATTTAAAATAT
1 AAAAACTTTTAATATAATTTAATATAAAATAT
18855451 TAAATTAATT
Statistics
Matches: 110, Mismatches: 17, Indels: 20
0.75 0.12 0.14
Matches are distributed among these distances:
33 1 0.01
34 50 0.45
35 33 0.30
36 21 0.19
37 5 0.05
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (35 bp):
AAAAACTTTTAATATAATTTAATATAAAATATGTT
Found at i:18855459 original size:23 final size:25
Alignment explanation
Indices: 18855415--18855527 Score: 85
Period size: 26 Copynumber: 4.6 Consensus size: 25
18855405 AAAATAAAAT
* *
18855415 ATTTTAAATATTTTAATATAATTTA
1 ATTTAAAATATTTAAATATAATTTA
18855440 ATTTAAAATA-TTAAAT-TAATTT-
1 ATTTAAAATATTTAAATATAATTTA
* *
18855462 ATATACAATATGTTAAATAT--TTTA
1 ATTTAAAATAT-TTAAATATAATTTA
*
18855486 ATATAAAAAATATTTTAAA-ATAATTTA
1 AT-T-TAAAATA-TTTAAATATAATTTA
*
18855513 ATATAAAAATATTTA
1 AT-TTAAAATATTTA
18855528 TATTAAAAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
22 8 0.11
23 9 0.12
24 13 0.18
25 16 0.22
26 17 0.24
27 9 0.12
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (25 bp):
ATTTAAAATATTTAAATATAATTTA
Found at i:18855480 original size:70 final size:69
Alignment explanation
Indices: 18855355--18855525 Score: 148
Period size: 70 Copynumber: 2.4 Consensus size: 69
18855345 ATGTAAAAAC
* * **
18855355 TTTTAATATAATTTAATATAAAATATTATTTCCAAATTTTAGAAAATATAAAAATA-AAATATTT
1 TTTTAATATAATTTAATTTAAAATATTAATT-C-AATTTTAGAAAATATAAAAATATAAATATAA
*
18855419 TAAATA
64 AAAATA
* * * * *
18855425 TTTTAATATAATTTAATTTAAAATATTAAATT-AATTTATATACAATATGTTAAATATTTTAATA
1 TTTTAATATAATTTAATTTAAAATATT-AATTCAATTT-TAGA-AA-AT-ATAAAAATATAAATA
18855489 TAAAAAATA
61 TAAAAAATA
* *
18855498 TTTTAAAATAATTTAATATAAAAATATT
1 TTTTAATATAATTTAAT-TTAAAATATT
18855526 TATATTAAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
68 5 0.06
69 3 0.04
70 28 0.34
71 5 0.06
72 6 0.07
73 26 0.32
74 9 0.11
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (69 bp):
TTTTAATATAATTTAATTTAAAATATTAATTCAATTTTAGAAAATATAAAAATATAAATATAAAA
AATA
Found at i:18855496 original size:17 final size:17
Alignment explanation
Indices: 18855476--18855508 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
18855466 ACAATATGTT
*
18855476 AAATATTTTAATATAAA
1 AAATATTTTAAAATAAA
18855493 AAATATTTTAAAATAA
1 AAATATTTTAAAATAA
18855509 TTTAATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATATTTTAAAATAAA
Found at i:18855497 original size:26 final size:27
Alignment explanation
Indices: 18855420--18855521 Score: 85
Period size: 23 Copynumber: 4.1 Consensus size: 27
18855410 AAAATATTTT
* * *
18855420 AAATATTTTAATATAATTTAAT-T-TA
1 AAATATGTTAAAATAATTTAATATAAA
*
18855445 AAATA--TTAAATTAATTT-ATAT--A
1 AAATATGTTAAAATAATTTAATATAAA
* *
18855467 CAATATGTT-AAATATTTTAATATAAA
1 AAATATGTTAAAATAATTTAATATAAA
*
18855493 AAATATTTTAAAATAATTTAATATAAA
1 AAATATGTTAAAATAATTTAATATAAA
18855520 AA
1 AA
18855522 TATTTATATT
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
22 7 0.11
23 18 0.29
24 6 0.10
25 5 0.08
26 8 0.13
27 18 0.29
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (27 bp):
AAATATGTTAAAATAATTTAATATAAA
Found at i:18855523 original size:16 final size:16
Alignment explanation
Indices: 18855502--18855538 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
18855492 AAAATATTTT
18855502 AAAATAATTTA-ATATA
1 AAAATAATTTATAT-TA
18855518 AAAAT-ATTTATATTA
1 AAAATAATTTATATTA
18855533 AAAATA
1 AAAATA
18855539 TTATTAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAATAATTTATATTA
Found at i:18855526 original size:15 final size:14
Alignment explanation
Indices: 18855476--18855540 Score: 55
Period size: 14 Copynumber: 4.5 Consensus size: 14
18855466 ACAATATGTT
18855476 AAATATTTTAATATAAA
1 AAATA-TTT-ATAT-AA
18855493 AAATATTT-TA-AA
1 AAATATTTATATAA
*
18855505 ATAAT-TTAATATAA
1 A-AATATTTATATAA
18855519 AAATATTTATATTAA
1 AAATATTTATA-TAA
18855534 AAATATT
1 AAATATT
18855541 ATTAAATTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
12 5 0.12
13 8 0.20
14 10 0.24
15 10 0.24
16 3 0.07
17 5 0.12
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AAATATTTATATAA
Found at i:18855539 original size:41 final size:45
Alignment explanation
Indices: 18855476--18855558 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 45
18855466 ACAATATGTT
18855476 AAATATTTTAATATAAAAAATATT-TTAAAATA-ATTTAATATAA
1 AAATATTTTAATATAAAAAATATTATTAAAATATATTTAATATAA
* *
18855519 AAATA-TTT-ATATTAAAAATATTATTAAATTATATTTAATA
1 AAATATTTTAATATAAAAAATATTATTAAAATATATTTAATA
18855559 ACAATACTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
41 13 0.36
42 10 0.28
43 13 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (45 bp):
AAATATTTTAATATAAAAAATATTATTAAAATATATTTAATATAA
Found at i:18855569 original size:26 final size:28
Alignment explanation
Indices: 18855521--18855572 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
18855511 TAATATAAAA
*
18855521 ATATTTATATTAAAAATATTATTAAATT
1 ATATTTATATTAAAAATACTATTAAATT
*
18855549 ATATTTA-A-TAACAATACTATTAAA
1 ATATTTATATTAAAAATACTATTAAA
18855573 GTTTAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 14 0.64
27 1 0.05
28 7 0.32
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (28 bp):
ATATTTATATTAAAAATACTATTAAATT
Found at i:18855766 original size:16 final size:16
Alignment explanation
Indices: 18855742--18855788 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
18855732 TGAATTATTA
18855742 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
* *
18855758 ATTAAAACT-TCATTAC
1 ATTACAACTCT-ATTCC
18855774 ATTACAACTCTATTC
1 ATTACAACTCTATTC
18855789 TATCTCAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 1 0.04
16 23 0.92
17 1 0.04
ACGTcount: A:0.36, C:0.26, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:18857478 original size:30 final size:30
Alignment explanation
Indices: 18857444--18857505 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
18857434 ACTTATTTTA
*
18857444 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
* *
18857474 TTGTTAATTTTATTATTATTTTAGAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
18857504 TT
1 TT
18857506 ACTTGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:18857657 original size:12 final size:12
Alignment explanation
Indices: 18857627--18857659 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
18857617 TATATATTTT
18857627 AAAATT-ATATA
1 AAAATTAATATA
18857638 AAAA-TAATATA
1 AAAATTAATATA
18857649 AAAATTAATAT
1 AAAATTAATAT
18857660 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:18860591 original size:61 final size:60
Alignment explanation
Indices: 18860482--18860663 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 60
18860472 TTTTTAATTT
* * *
18860482 TTTTGTACAAACTATTTTT-T-TTATTGT-TTCATTTAATAAAATAAAAGTTGTTTTGAATA
1 TTTTGTACAAATTATTTTTATATT-TTGTCCT-ATTTAATAAAATAAAAGTTATTTTGAATA
* *
18860541 TATTTGTACAAATTATTTTTATATTTTGTCCTATTTAATAAAATAGAAGTTATTTTTAATA
1 T-TTTGTACAAATTATTTTTATATTTTGTCCTATTTAATAAAATAAAAGTTATTTTGAATA
* * * *
18860602 TTTTAATAATAAATTATTTTTATATTTTGTCCTACTTAATAAAATAAAAGTTCTTTTGAATA
1 TTTT-GT-ACAAATTATTTTTATATTTTGTCCTATTTAATAAAATAAAAGTTATTTTGAATA
18860664 AGGTAATAGA
Statistics
Matches: 106, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
59 1 0.01
60 20 0.19
61 33 0.31
62 52 0.49
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (60 bp):
TTTTGTACAAATTATTTTTATATTTTGTCCTATTTAATAAAATAAAAGTTATTTTGAATA
Found at i:18863715 original size:25 final size:25
Alignment explanation
Indices: 18863682--18863743 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
18863672 AACTTATACA
*
18863682 TTCTCAACTTCTTAAATTTATATTC
1 TTCTAAACTTCTTAAATTTATATTC
* *
18863707 TTCTAAACTTCTTCAATTTTTATTC
1 TTCTAAACTTCTTAAATTTATATTC
*
18863732 TTCTGAACTTCT
1 TTCTAAACTTCT
18863744 CTAGTTTCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.24, C:0.21, G:0.02, T:0.53
Consensus pattern (25 bp):
TTCTAAACTTCTTAAATTTATATTC
Found at i:18864142 original size:127 final size:125
Alignment explanation
Indices: 18863820--18864143 Score: 375
Period size: 125 Copynumber: 2.6 Consensus size: 125
18863810 AAGCAGGATG
* * * * * *
18863820 TACTATAGAAAAAGAGTGTCCAGGTGGAAGCTTTTTTCAGTACTTTTACTGTCAGTGCATCCTGC
1 TACTATAGAAAAAGAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCTTGC
* * * *
18863885 TTGAAGCATTTTTTACCCTATTTTTTCAAGACCATCTTCTCTAAATCATTTTTTAGATAC
66 TTGAAACATTTTTGACCCTATTTTTTCAAGACCATCTTCTCAAAATCATTTTTTAGAAAC
* * *
18863945 TACTATAGAAAAAGAGCATCCAAGTGAGAGCTTTTTTCTA-TACTTTTGCTGACAATGCATCTTG
1 TACTATAGAAAAAGAGCGTCCAAGTGGGAGCTTTTTTC-AGTACTTTTGCTGACAGTGCATCTTG
* * *
18864009 CTTGAAACGTTTTTGACCCTGTTTTTTC-AGAACCATCTTCTCAAAATTATTTTTTCA-AAACC
65 CTTGAAACATTTTTGACCCTATTTTTTCAAG-ACCATCTTCTCAAAATCATTTTTT-AGAAA-C
* * * * * *
18864071 TATTGTTAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTCAGTATTTTTGCTAACAGTGCATCTTG
1 TACT-ATAGAAAAAGAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCTTG
*
18864136 CCTGAAAC
65 CTTGAAAC
18864144 TGATACCAAC
Statistics
Matches: 167, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
124 2 0.01
125 101 0.60
126 7 0.04
127 57 0.34
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (125 bp):
TACTATAGAAAAAGAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCTTGC
TTGAAACATTTTTGACCCTATTTTTTCAAGACCATCTTCTCAAAATCATTTTTTAGAAAC
Found at i:18864644 original size:31 final size:31
Alignment explanation
Indices: 18864551--18864646 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
18864541 GGCAAATTAC
*
18864551 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
18864582 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
18864614 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
18864645 AA
1 AA
18864647 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:18867779 original size:24 final size:23
Alignment explanation
Indices: 18867750--18867816 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
18867740 TTTGCTTTTT
*
18867750 GCTTTTTTTTCTTTTTTTTTTGC
1 GCTTTTTATTCTTTTTTTTTTGC
* *
18867773 GCTTTTTACTCACTTTTTTTTTGC
1 GCTTTTTATTC-TTTTTTTTTTGC
18867797 GCTTTTT-TGT-TTTTTTTTTT
1 GCTTTTTAT-TCTTTTTTTTTT
18867817 AAAGAATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 9 0.24
23 9 0.24
24 19 0.51
ACGTcount: A:0.03, C:0.13, G:0.09, T:0.75
Consensus pattern (23 bp):
GCTTTTTATTCTTTTTTTTTTGC
Found at i:18868428 original size:32 final size:31
Alignment explanation
Indices: 18868356--18868450 Score: 156
Period size: 31 Copynumber: 3.1 Consensus size: 31
18868346 GGCAAATTAC
*
18868356 AAGAGTAATTAAATCCTAATAAAACTCTTT-
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
*
18868386 CAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
18868418 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
18868449 AA
1 AA
18868451 ATTATCTAAG
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
30 18 0.30
31 23 0.38
32 19 0.32
ACGTcount: A:0.46, C:0.14, G:0.08, T:0.32
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:18886749 original size:37 final size:37
Alignment explanation
Indices: 18886708--18886780 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
18886698 TATGTCTTAG
18886708 CTCTCTTTAAGAGCATTGCCTCCATTATATGACCATT
1 CTCTCTTTAAGAGCATTGCCTCCATTATATGACCATT
*
18886745 CTCTCTTTAGGAGCATTGCCTCCATTATATGACCAT
1 CTCTCTTTAAGAGCATTGCCTCCATTATATGACCAT
18886781 CTTGATTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.37
Consensus pattern (37 bp):
CTCTCTTTAAGAGCATTGCCTCCATTATATGACCATT
Found at i:18887838 original size:16 final size:16
Alignment explanation
Indices: 18887806--18887853 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
18887796 AATAGAATTG
18887806 TAATTAAAATTTTAAAAA
1 TAATTAAAA--TTAAAAA
18887824 TAATTAAAATTAAAAA
1 TAATTAAAATTAAAAA
*
18887840 -AATATAAAACTAAA
1 TAAT-TAAAATTAAA
18887854 TATTGGTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 3 0.11
16 16 0.57
18 9 0.32
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (16 bp):
TAATTAAAATTAAAAA
Found at i:18887840 original size:18 final size:18
Alignment explanation
Indices: 18887806--18887843 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
18887796 AATAGAATTG
**
18887806 TAATTAAAATTTTAAAAA
1 TAATTAAAATTAAAAAAA
18887824 TAATTAAAATTAAAAAAA
1 TAATTAAAATTAAAAAAA
18887842 TA
1 TA
18887844 TAAAACTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TAATTAAAATTAAAAAAA
Found at i:18888747 original size:16 final size:17
Alignment explanation
Indices: 18888718--18888750 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18888708 TTTGAATTGT
18888718 TCTAAATTATTATTTTA
1 TCTAAATTATTATTTTA
*
18888735 TCTAATTTA-TATTTTA
1 TCTAAATTATTATTTTA
18888751 GGTTTCTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
TCTAAATTATTATTTTA
Found at i:18889689 original size:41 final size:40
Alignment explanation
Indices: 18889644--18889731 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
18889634 AGCGGCGCTT
* *
18889644 TTAGCGGCGTTTGGACAAAAAACGCCAC-TAATAATCGAGCA
1 TTAGCGGCATTT-GACAAAAAACGCCACAAAAT-ATCGAGCA
* * *
18889685 TTAGCGGCATTTTACGAAAAACGCCGCAAAATATCGAGCA
1 TTAGCGGCATTTGACAAAAAACGCCACAAAATATCGAGCA
18889725 TTAGCGG
1 TTAGCGG
18889732 TGCTACATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
40 27 0.66
41 14 0.34
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (40 bp):
TTAGCGGCATTTGACAAAAAACGCCACAAAATATCGAGCA
Found at i:18889784 original size:40 final size:39
Alignment explanation
Indices: 18889660--18889784 Score: 110
Period size: 40 Copynumber: 3.1 Consensus size: 39
18889650 GCGTTTGGAC
* *
18889660 AAAAAACGCCACTAATAATCGAGCATTAGCGGCATTTTAC-
1 AAAAAACGCCGCTAA-AATCGAGCATTAGC-GCGTTTTACA
* * **
18889700 GAAAAACGCCGCAAAATATCGAGCATTAGCG-GTGCTACATA
1 AAAAAACGCCGCTAAA-ATCGAGCATTAGCGCGTTTTAC--A
* *
18889741 AAAAAACGCCGCTAAAACCAAGCATTAGCAGCGTTTTACA
1 AAAAAACGCCGCTAAAATCGAGCATTAGC-GCGTTTTACA
18889781 AAAA
1 AAAA
18889785 GCGCCGCAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
38 4 0.06
39 2 0.03
40 41 0.61
41 15 0.22
42 5 0.07
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.18
Consensus pattern (39 bp):
AAAAAACGCCGCTAAAATCGAGCATTAGCGCGTTTTACA
Found at i:18889951 original size:111 final size:112
Alignment explanation
Indices: 18889775--18890115 Score: 497
Period size: 111 Copynumber: 3.0 Consensus size: 112
18889765 TTAGCAGCGT
* * *
18889775 TTTACAAAAAGCGCCGCAATAGAGTCACACAGAACGACGTCGTTTTCATATATTTGGGAACATTA
1 TTTACAAAAAGCGCCGAAATAGAGTAACACAGAACGACGCCGTTTTCATATATTTGGGAACATTA
18889840 GTGGCGGTTTTTCCCAAGCGCCGCTAAAACTCTGTTCTTCAGCGGCG
66 GTGGCGGTTTTTCCCAAGCGCCGCTAAAACTCTGTTCTTCAGCGGCG
* * *
18889887 TTTATAAAAAGCGCCGTAATGGAGTAACACAGAACGACGCCG-TTTCATATATTTGGGAACATTA
1 TTTACAAAAAGCGCCGAAATAGAGTAACACAGAACGACGCCGTTTTCATATATTTGGGAACATTA
* * **
18889951 GTGGCGGTTTTGCCCAAGCGCCGCTAATACTCCATTCTTCAGCGGCG
66 GTGGCGGTTTTTCCCAAGCGCCGCTAAAACTCTGTTCTTCAGCGGCG
* *
18889998 TTTTACAAAAAGCGTCGCAAATAGAGTAACACAGAACGACGCCGTTTTCATATATTTGGGAACAC
1 -TTTACAAAAAGCGCCG-AAATAGAGTAACACAGAACGACGCCGTTTTCATATATTTGGGAACAT
* * *
18890063 TAGTGGCGGTTTTTGCCCAAACGCCGCTAATAA-TTTGTTCTTCAACGGCG
64 TAGTGGCGGTTTTT-CCCAAGCGCCGCTAA-AACTCTGTTCTTCAGCGGCG
18890113 TTT
1 TTT
18890116 GGCGTTAAGC
Statistics
Matches: 203, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
111 65 0.32
112 51 0.25
113 24 0.12
114 35 0.17
115 27 0.13
116 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (112 bp):
TTTACAAAAAGCGCCGAAATAGAGTAACACAGAACGACGCCGTTTTCATATATTTGGGAACATTA
GTGGCGGTTTTTCCCAAGCGCCGCTAAAACTCTGTTCTTCAGCGGCG
Found at i:18894026 original size:28 final size:27
Alignment explanation
Indices: 18893965--18894047 Score: 150
Period size: 27 Copynumber: 3.1 Consensus size: 27
18893955 TTTAATAGAT
18893965 AATTTTATTTGTATTAACAATTTTTAA
1 AATTTTATTTGTATTAACAATTTTTAA
18893992 AATTTTATTTGTATTAACAATTTTTAA
1 AATTTTATTTGTATTAACAATTTTTAA
18894019 AATTTT-TATTGTATTAACAATTTTTAA
1 AATTTTAT-TTGTATTAACAATTTTTAA
18894046 AA
1 AA
18894048 ATTACATTAT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (27 bp):
AATTTTATTTGTATTAACAATTTTTAA
Found at i:18894456 original size:14 final size:14
Alignment explanation
Indices: 18894434--18894473 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
18894424 TATGACACCA
*
18894434 AATATATTTTAAAC
1 AATAAATTTTAAAC
18894448 AATAAATTTTAAAC
1 AATAAATTTTAAAC
* *
18894462 ATTAAAGTTTAA
1 AATAAATTTTAA
18894474 TTTTAAACAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.40
Consensus pattern (14 bp):
AATAAATTTTAAAC
Found at i:18899532 original size:43 final size:43
Alignment explanation
Indices: 18899271--18899535 Score: 422
Period size: 43 Copynumber: 6.2 Consensus size: 43
18899261 CAAAATTAGC
* *
18899271 GGCGTTTTTTGGATAAGCGCCGCTAAAGACCATCGTCTATAGT
1 GGCGTTTTTTGGCTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
18899314 GGCATTTTTTGGCTAAGCGCCGCTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGGCTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
18899357 GGCGTTTTTCGGCTAAGCGCCGCTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGGCTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * *
18899400 GGCATTTTTTGTCTAAGAGCCGCTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGGCTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * * *
18899443 GGCATTTTTTGTCTAAGCGTCGCTAAAGGCCATGGTCTATAGT
1 GGCGTTTTTTGGCTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
18899486 GGCGTTTTCTGGCTAAGCGCCGCTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGGCTAAGCGCCGCTAAAGACCATGGTCTATAGT
18899529 GGCGTTT
1 GGCGTTT
18899536 GGATAAAAAA
Statistics
Matches: 205, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 205 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (43 bp):
GGCGTTTTTTGGCTAAGCGCCGCTAAAGACCATGGTCTATAGT
Found at i:18899635 original size:40 final size:39
Alignment explanation
Indices: 18899540--18899675 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
18899530 GCGTTTGGAT
* * *
18899540 AAAAAACGCCGCTAAAAATGGAACATTAGCGGCG-CTTTA
1 AAAAAACGCCGCT-AAAATTGAGCATTAGCGGCGTTTTTA
* * * * *
18899579 TGAAAATCACCACTAAAGATTGAGCAATAGCGGCGTTTTTA
1 -AAAAAACGCCGCTAAA-ATTGAGCATTAGCGGCGTTTTTA
* * *
18899620 AAAAAACGCCGCTAAAAATGAGCATTAGCGGCATTTTTT
1 AAAAAACGCCGCTAAAATTGAGCATTAGCGGCGTTTTTA
* *
18899659 GAAAAACGCCGCAAAAA
1 AAAAAACGCCGCTAAAA
18899676 ACCTAAGCCC
Statistics
Matches: 76, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
39 37 0.49
40 35 0.46
41 4 0.05
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (39 bp):
AAAAAACGCCGCTAAAATTGAGCATTAGCGGCGTTTTTA
Found at i:18899651 original size:39 final size:39
Alignment explanation
Indices: 18899540--18899676 Score: 132
Period size: 40 Copynumber: 3.5 Consensus size: 39
18899530 GCGTTTGGAT
* *
18899540 AAAAAACGCCGCTAAAAATGGAACATTAGCGGCG-CTTTA
1 AAAAAACGCCGCTAAAAAT-GAGCATTAGCGGCGTTTTTA
* * * * * *
18899579 TGAAAATCACCACTAAAGATTGAGCAATAGCGGCGTTTTTA
1 -AAAAAACGCCGCTAAA-AATGAGCATTAGCGGCGTTTTTA
* *
18899620 AAAAAACGCCGCTAAAAATGAGCATTAGCGGCATTTTTT
1 AAAAAACGCCGCTAAAAATGAGCATTAGCGGCGTTTTTA
* *
18899659 GAAAAACGCCGCAAAAAA
1 AAAAAACGCCGCTAAAAA
18899677 CCTAAGCCCA
Statistics
Matches: 77, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
39 35 0.45
40 36 0.47
41 6 0.08
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (39 bp):
AAAAAACGCCGCTAAAAATGAGCATTAGCGGCGTTTTTA
Found at i:18899771 original size:41 final size:41
Alignment explanation
Indices: 18899711--18899873 Score: 236
Period size: 41 Copynumber: 4.0 Consensus size: 41
18899701 GGACCTTTCG
*
18899711 TGGTCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATGCTC
1 TGGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTC
* * *
18899752 TGGTCTTTAGCAGCCTTTTTGAAAAAGCGCCGCTAATGCTC
1 TGGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTC
* *
18899793 TTGCCTTTAGCGGCGTTTTTTGGAAAAGCGCCGCTAATGCTC
1 TGGTCTTTAGCGGCG-TTTTTGGAAAAGCGCCGCTAATGCTC
* * *
18899835 TGTTCTTTAGCGGCGTTTTTGCAAAAACGCCGCTAATGC
1 TGGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
18899874 AAAATACTAT
Statistics
Matches: 107, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
41 70 0.65
42 37 0.35
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.33
Consensus pattern (41 bp):
TGGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTC
Found at i:18899854 original size:83 final size:82
Alignment explanation
Indices: 18899715--18899873 Score: 257
Period size: 83 Copynumber: 1.9 Consensus size: 82
18899705 CTTTCGTGGT
18899715 CTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATGCTCTGGTCTTTAGCAGCCTTTTTG-AAAAAG
1 CTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATGCTCTGGTCTTTAGCAGCCTTTTTGCAAAAA-
18899779 CGCCGCTAATGCTCTTGC
65 CGCCGCTAATGCTCTTGC
* * * *
18899797 CTTTAGCGGCGTTTTTTGGAAAAGCGCCGCTAATGCTCTGTTCTTTAGCGGCGTTTTTGCAAAAA
1 CTTTAACGGCG-TTTTTGGAAAAGCGCCGCTAATGCTCTGGTCTTTAGCAGCCTTTTTGCAAAAA
18899862 CGCCGCTAATGC
65 CGCCGCTAATGC
18899874 AAAATACTAT
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
82 10 0.14
83 56 0.79
84 5 0.07
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (82 bp):
CTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATGCTCTGGTCTTTAGCAGCCTTTTTGCAAAAAC
GCCGCTAATGCTCTTGC
Found at i:18899995 original size:17 final size:19
Alignment explanation
Indices: 18899958--18899996 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
18899948 AAATTTTTTT
18899958 ATAGAATTAATTATATAAA
1 ATAGAATTAATTATATAAA
*
18899977 ATAGTATTAATT-T-TAAA
1 ATAGAATTAATTATATAAA
18899994 ATA
1 ATA
18899997 TTAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (19 bp):
ATAGAATTAATTATATAAA
Found at i:18900129 original size:7 final size:7
Alignment explanation
Indices: 18900117--18900144 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
18900107 ATGAATTTAA
18900117 GGATTAT
1 GGATTAT
18900124 GGATTAT
1 GGATTAT
18900131 GGATTAT
1 GGATTAT
18900138 GGATTAT
1 GGATTAT
18900145 AGTTTAAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (7 bp):
GGATTAT
Found at i:18900131 original size:22 final size:22
Alignment explanation
Indices: 18900090--18900144 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
18900080 GAGTTACTAT
* *
18900090 TTTAAGGTTTAGGGAGTATGAA
1 TTTAAGGATTATGGAGTATGAA
* *
18900112 TTTAAGGATTATGGATTATGGA
1 TTTAAGGATTATGGAGTATGAA
*
18900134 -TTATGGATTAT
1 TTTAAGGATTAT
18900145 AGTTTAAGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (22 bp):
TTTAAGGATTATGGAGTATGAA
Found at i:18900179 original size:7 final size:7
Alignment explanation
Indices: 18900169--18900225 Score: 51
Period size: 7 Copynumber: 7.9 Consensus size: 7
18900159 AATTTAAGGT
18900169 TTAGGGG
1 TTAGGGG
18900176 TTAGGGG
1 TTAGGGG
*
18900183 TTAAGGGT
1 TT-AGGGG
*
18900191 TTAAGGG
1 TTAGGGG
*
18900198 TTAGAGG
1 TTAGGGG
18900205 TTATGGGG
1 TTA-GGGG
* *
18900213 TTAAGAG
1 TTAGGGG
18900220 TTAGGG
1 TTAGGG
18900226 ATTCAAGGGT
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
7 26 0.68
8 12 0.32
ACGTcount: A:0.23, C:0.00, G:0.46, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:18900189 original size:15 final size:15
Alignment explanation
Indices: 18900166--18900217 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
18900156 TGGAATTTAA
*
18900166 GGTTTAGGGGTTAGG
1 GGTTAAGGGGTTAGG
* *
18900181 GGTTAAGGGTTTAAG
1 GGTTAAGGGGTTAGG
*
18900196 GGTT-AGAGGTTATGG
1 GGTTAAGGGGTTA-GG
18900211 GGTTAAG
1 GGTTAAG
18900218 AGTTAGGGAT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
14 6 0.21
15 21 0.72
16 2 0.07
ACGTcount: A:0.21, C:0.00, G:0.46, T:0.33
Consensus pattern (15 bp):
GGTTAAGGGGTTAGG
Found at i:18900198 original size:22 final size:22
Alignment explanation
Indices: 18900162--18900235 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 22
18900152 GGGTTGGAAT
*
18900162 TTAA-GGTTTAGGGGTTAGGGG
1 TTAAGGGTTTAAGGGTTAGGGG
*
18900183 TTAAGGGTTTAAGGGTTAGAGG
1 TTAAGGGTTTAAGGGTTAGGGG
* * * *
18900205 TTATGGGGTTAAGAGTTAGGGA
1 TTAAGGGTTTAAGGGTTAGGGG
18900227 TTCAAGGGT
1 TT-AAGGGT
18900236 CGGGTTAGGT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
21 4 0.10
22 34 0.81
23 4 0.10
ACGTcount: A:0.24, C:0.01, G:0.42, T:0.32
Consensus pattern (22 bp):
TTAAGGGTTTAAGGGTTAGGGG
Found at i:18900662 original size:306 final size:304
Alignment explanation
Indices: 18900032--18900634 Score: 703
Period size: 306 Copynumber: 2.0 Consensus size: 304
18900022 GGGTTTTAGG
* * *
18900032 TTTTTGGTTTAGGGTATATGATTAATTTAAGATTTAAGGCCGGTTTAGGAGTTACTATTTTAAGG
1 TTTTTAGTTTAAGGTATATGATTAATTTAAGATTTAAGGCCGATTTAGGAGTTACTATTTTAAGG
* **
18900097 TTTAGGGAGTATGAATTTAAGGATTATGGATTATGGATTATGGATTATAGTTTAAGGGTTGGAAT
66 TTTAGGGAGTATGAATTTAAGG----TGGATTATGGATTAGGGAACATAGTTTAAGGGTTGGAAT
* * * * *
18900162 TTAAGGTTTAGGGGTTAGGGGTTAAGGGTTTAAGGGTTAGAGGTTATGGGGTTAAGAGTTAGGGA
127 TTAAGGTTTAGGGGTTAGAGGTTAAGGATTTAAGGGTTAGAAGTTATAGGATTAAGAGTTAGGGA
* * * * *
18900227 TTCAAGGGTCGGGTTAGGTTTTTGGGTGTAGATTAATTAGTTTTTTTAATTTATATTTTAAATAT
192 CTCAAGGGTCAGGTTAGGGTTTTGGGTGTAAATTAATTAGTTTTTTAAATTTATATTTTAAATAT
*
18900292 GCTCTTATATATATATATAATTGTAAAAGAAATAATAATAAATTTATTTAAGG
257 G----T-TATATATATATAATTGTAAAAGAAATAATAATAAATTTATTTAAGA
18900345 TTTTTAGTTTAAGGTATATGATTAATTTAAGATTTAAGGCCGATTTAGGAGTTACTATTTTAAGG
1 TTTTTAGTTTAAGGTATATGATTAATTTAAGATTTAAGGCCGATTTAGGAGTTACTATTTTAAGG
*
18900410 TTTAAGGG-GTAT-AGATTT-A-G-GGATTATGGATTAGGGAACATGGTTTAAGGGTT-GAGATT
66 TTT-AGGGAGTATGA-ATTTAAGGTGGATTATGGATTAGGGAACATAGTTTAAGGGTTGGA-ATT
* ** * *
18900469 TAAGGTTTAGGGGTTTAGAGGTT-AGATATTTTGGGGTTA-ATAGTTA-AGGATTTAGGGTTTA-
128 TAAGGTTTAGGGG-TTAGAGGTTAAG-GATTTAAGGGTTAGA-AGTTATAGGATTAAGAG-TTAG
* * * *
18900530 GGCCTCAGGGGTCAGGTTGGGGTTTTGGGTTTAAATTAATTAG-TTTTTAAATTTATATTTTAAA
189 GGACTCAAGGGTCAGGTTAGGGTTTTGGGTGTAAATTAATTAGTTTTTTAAATTTATATTTTAAA
* *
18900594 TATG-T-TCT-TATATAATTGTAAAAGAGATAATAATAAATTTA
254 TATGTTATATATATATAATTGTAAAAGAAATAATAATAAATTTA
18900635 ATATATTGAA
Statistics
Matches: 255, Mismatches: 28, Indels: 30
0.81 0.09 0.10
Matches are distributed among these distances:
297 32 0.13
298 2 0.01
299 1 0.00
305 26 0.10
306 90 0.35
307 24 0.09
311 1 0.00
312 2 0.01
313 73 0.29
314 4 0.02
ACGTcount: A:0.30, C:0.03, G:0.26, T:0.41
Consensus pattern (304 bp):
TTTTTAGTTTAAGGTATATGATTAATTTAAGATTTAAGGCCGATTTAGGAGTTACTATTTTAAGG
TTTAGGGAGTATGAATTTAAGGTGGATTATGGATTAGGGAACATAGTTTAAGGGTTGGAATTTAA
GGTTTAGGGGTTAGAGGTTAAGGATTTAAGGGTTAGAAGTTATAGGATTAAGAGTTAGGGACTCA
AGGGTCAGGTTAGGGTTTTGGGTGTAAATTAATTAGTTTTTTAAATTTATATTTTAAATATGTTA
TATATATATAATTGTAAAAGAAATAATAATAAATTTATTTAAGA
Found at i:18900962 original size:26 final size:25
Alignment explanation
Indices: 18900924--18900983 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
18900914 GGACCAAATT
*
18900924 ATAAGAAATAAAATTAAAATACAA-AA
1 ATAA-AAATAAAA-TAAAATAAAATAA
*
18900950 ATAAAAATAAAAATGAAATAAAATAA
1 ATAAAAAT-AAAATAAAATAAAATAA
18900976 ATAAAAAT
1 ATAAAAAT
18900984 TATAATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 12 0.40
26 18 0.60
ACGTcount: A:0.75, C:0.02, G:0.03, T:0.20
Consensus pattern (25 bp):
ATAAAAATAAAATAAAATAAAATAA
Found at i:18905455 original size:13 final size:13
Alignment explanation
Indices: 18905437--18905463 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18905427 TCTGTTGCTC
18905437 ATATGTATATTTA
1 ATATGTATATTTA
18905450 ATATGTATATTTA
1 ATATGTATATTTA
18905463 A
1 A
18905464 AGTTCAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (13 bp):
ATATGTATATTTA
Found at i:18905618 original size:43 final size:43
Alignment explanation
Indices: 18905539--18905703 Score: 197
Period size: 43 Copynumber: 3.8 Consensus size: 43
18905529 TATGTATTTT
* * *
18905539 TAAAGGTT-ATGTTTTTAGCAGCGTTTGTGGGAAAAAGCGCCGC
1 TAAAGGTTAAAGTCTTTAGCGGCGTTTGTGGG-AAAAGCGCCGC
* * *
18905582 TAAAGGTTAAAGTCTTTAGCGGTGTTTGTGGGAAAAGTGTCGC
1 TAAAGGTTAAAGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
*
18905625 TAAAGGTTAAGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTTAAAGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
*** **
18905668 TAAAGAACATGGTCTTTAGCGGCGTTTGTGGAGAAA
1 TAAAGGTTAAAGTCTTTAGCGGCGTTTGTGG-GAAA
18905704 GTGCCACTAA
Statistics
Matches: 106, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
43 83 0.78
44 23 0.22
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.29
Consensus pattern (43 bp):
TAAAGGTTAAAGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
Found at i:18905684 original size:86 final size:87
Alignment explanation
Indices: 18905539--18905703 Score: 226
Period size: 86 Copynumber: 1.9 Consensus size: 87
18905529 TATGTATTTT
* * ***
18905539 TAAAGGTTATGTTTTTAGCAGCGTTTGTGGGAAAAAGCGCCGCTAAAGGTTAAAGTCTTTAGCGG
1 TAAAGGTTAGGTCTTTAGCAGCGTTTGTGGGAAAAAGCGCCGCTAAAGAACAAAGTCTTTAGCGG
*
18905604 TGTTTGTGG-GAAAAGTGTCGC
66 CGTTTGTGGAGAAAAGTGTCGC
* **
18905625 TAAAGGTTAAGGTCTTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGAACATGGTCTTTAGCG
1 TAAAGGTT-AGGTCTTTAGCAGCGTTTGTGGGAAAAAGCGCCGCTAAAGAACAAAGTCTTTAGCG
18905689 GCGTTTGTGGAGAAA
65 GCGTTTGTGGAGAAA
18905704 GTGCCACTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
86 44 0.65
87 24 0.35
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.29
Consensus pattern (87 bp):
TAAAGGTTAGGTCTTTAGCAGCGTTTGTGGGAAAAAGCGCCGCTAAAGAACAAAGTCTTTAGCGG
CGTTTGTGGAGAAAAGTGTCGC
Found at i:18905714 original size:43 final size:43
Alignment explanation
Indices: 18905552--18905737 Score: 185
Period size: 43 Copynumber: 4.3 Consensus size: 43
18905542 AGGTTATGTT
* * *** **
18905552 TTTAGCAGCGTTTGTGGGAAAAAGCGCCGCTAAAGGTTAAAGTC
1 TTTAGCGGCGTTTGTGGG-AAAAGTGCCGCTAAAGAACATGGTC
* * *** *
18905596 TTTAGCGGTGTTTGTGGGAAAAGTGTCGCTAAAGGTTAAGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGAACATGGTC
*
18905639 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGAACATGGTC
* **
18905682 TTTAGCGGCGTTTGT-GGAGAAAGTGCCACTAAAGAACATGACC
1 TTTAGCGGCGTTTGTGGGA-AAAGTGCCGCTAAAGAACATGGTC
*
18905725 TTTAGCGACGTTT
1 TTTAGCGGCGTTT
18905738 TTAAAAATAA
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 3 0.02
43 105 0.85
44 16 0.13
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGAACATGGTC
Found at i:18905728 original size:86 final size:87
Alignment explanation
Indices: 18905552--18905737 Score: 205
Period size: 86 Copynumber: 2.1 Consensus size: 87
18905542 AGGTTATGTT
* *** *
18905552 TTTAGCAGCGTTTGTGGGAAAAAGCGCCGCTAAAGGTTAAAGTCTTTAGCGGTGTTTGTGGGAAA
1 TTTAGCGGCGTTTGTGGGAAAAAGCGCCGCTAAAGAACAAAGTCTTTAGCGGCGTTTGTGGGAAA
* * *** **
18905617 AGTGTCGCTAAAGGTTAAGGTC
66 AGTGCCACTAAAGAACAAGACC
**
18905639 TTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTGT-GGAGA
1 TTTAGCGGCGTTTGTGGGAAAAAGCGCCGCTAAAGAACAAAGTCTTTAGCGGCGTTTGTGGGA-A
*
18905702 AAGTGCCACTAAAGAACATGACC
65 AAGTGCCACTAAAGAACAAGACC
*
18905725 TTTAGCGACGTTT
1 TTTAGCGGCGTTT
18905738 TTAAAAATAA
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
85 3 0.04
86 62 0.76
87 17 0.21
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (87 bp):
TTTAGCGGCGTTTGTGGGAAAAAGCGCCGCTAAAGAACAAAGTCTTTAGCGGCGTTTGTGGGAAA
AGTGCCACTAAAGAACAAGACC
Found at i:18914290 original size:16 final size:16
Alignment explanation
Indices: 18914266--18914296 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18914256 TCATATATCA
*
18914266 TCATTATCAATTCATC
1 TCATCATCAATTCATC
18914282 TCATCATCAATTCAT
1 TCATCATCAATTCAT
18914297 GTATATACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.42
Consensus pattern (16 bp):
TCATCATCAATTCATC
Found at i:18916106 original size:5 final size:5
Alignment explanation
Indices: 18916055--18916094 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
18916045 AATATAATTC
* *
18916055 ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT CTCAT CTCAT
1 ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT
18916095 TTCCATTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.35, C:0.25, G:0.00, T:0.40
Consensus pattern (5 bp):
ATCAT
Found at i:18918978 original size:27 final size:30
Alignment explanation
Indices: 18918940--18919016 Score: 88
Period size: 33 Copynumber: 2.6 Consensus size: 30
18918930 NNNNNNNNNN
18918940 TGCTAAGTGCTGATTCCCT-CGA-GG-GGT
1 TGCTAAGTGCTGATTCCCTACGATGGTGGT
* *
18918967 TGCTAAGTGCTGGTTTCCCTACCTATTGGTGGT
1 TGCTAAGTGCT-GATTCCCTA-CGA-TGGTGGT
18919000 TGCTAAGTGCTGATTCC
1 TGCTAAGTGCTGATTCC
18919017 ACCGTATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 11 0.27
28 7 0.17
30 2 0.05
32 7 0.17
33 14 0.34
ACGTcount: A:0.14, C:0.22, G:0.29, T:0.35
Consensus pattern (30 bp):
TGCTAAGTGCTGATTCCCTACGATGGTGGT
Found at i:18919138 original size:103 final size:102
Alignment explanation
Indices: 18918940--18919223 Score: 417
Period size: 103 Copynumber: 2.8 Consensus size: 102
18918930 NNNNNNNNNN
* * * * *
18918940 TGCTAAGTGCTGATTCCCTCGAGGGGTTGCTAAGTGCTGGTTTCCCTACCTATTGGTGGTTGCTA
1 TGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGACCCATTGGTGGTTGCTA
* * *
18919005 AGTGCTGATTCCACCGTATTTTAAATGTGAAGGGGGT
66 AGTGCTGATTCCACCGCATCTGAAATGTGAAGGGGGT
18919042 TGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGACCCATTTGGTGGTTGCT
1 TGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGACCCA-TTGGTGGTTGCT
18919107 AAGTGCTGATTCCACCGCATCTGAAATGTGAAGGGGGT
65 AAGTGCTGATTCCACCGCATCTGAAATGTGAAGGGGGT
* ** **
18919145 TGCTAAGTGCTGATTCCCCCAAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGG-TGCTA
1 TGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGACCCATTGGTGGTTGCTA
* *
18919209 AGTGCGGAATCCACC
66 AGTGCTGATTCCACC
18919224 AACAACGGTT
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
101 18 0.11
102 54 0.33
103 94 0.57
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.31
Consensus pattern (102 bp):
TGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGACCCATTGGTGGTTGCTA
AGTGCTGATTCCACCGCATCTGAAATGTGAAGGGGGT
Found at i:18921931 original size:34 final size:34
Alignment explanation
Indices: 18921888--18921955 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
18921878 TTCTCTTTAT
18921888 GATCTGATGTGGTTGCTTTGATTGACCCTGGTTC
1 GATCTGATGTGGTTGCTTTGATTGACCCTGGTTC
*
18921922 GATCTGATGTGGTTTCTTTGATTGACCCTGGTTC
1 GATCTGATGTGGTTGCTTTGATTGACCCTGGTTC
18921956 TACTCATTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.12, C:0.18, G:0.28, T:0.43
Consensus pattern (34 bp):
GATCTGATGTGGTTGCTTTGATTGACCCTGGTTC
Found at i:18932548 original size:28 final size:27
Alignment explanation
Indices: 18932506--18932559 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
18932496 TTTTCCCTTT
* *
18932506 CTCCTTTCTCTTCTTCAACCTTCTTCAA
1 CTCCGTTCTCATCTTC-ACCTTCTTCAA
*
18932534 CTCCGTTCTCATCTTCAGCTTCTTCA
1 CTCCGTTCTCATCTTCACCTTCTTCA
18932560 TTACTAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.13, C:0.39, G:0.04, T:0.44
Consensus pattern (27 bp):
CTCCGTTCTCATCTTCACCTTCTTCAA
Found at i:18934797 original size:20 final size:20
Alignment explanation
Indices: 18934772--18934811 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
18934762 AATATTTTCC
*
18934772 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
18934792 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
18934812 TTATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:18934826 original size:34 final size:35
Alignment explanation
Indices: 18934760--18934826 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
18934750 CAAACACCAG
*
18934760 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
18934795 AAAACATTTTCCAG-AAATTATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
18934827 CATTTTACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:18936777 original size:30 final size:30
Alignment explanation
Indices: 18936741--18936802 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
18936731 CAGTACTTTC
18936741 AATAGTACGCTAATCAACGCCGAATCAATT
1 AATAGTACGCTAATCAACGCCGAATCAATT
* *
18936771 AATAGTACGCTTATCAGCGCCGAATCAATT
1 AATAGTACGCTAATCAACGCCGAATCAATT
18936801 AA
1 AA
18936803 CTTTATTTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.24
Consensus pattern (30 bp):
AATAGTACGCTAATCAACGCCGAATCAATT
Found at i:18939917 original size:29 final size:26
Alignment explanation
Indices: 18939885--18939971 Score: 106
Period size: 25 Copynumber: 3.3 Consensus size: 26
18939875 ATACAGATAA
18939885 ATTATAAAAATATGCACATGTATATATAT
1 ATTATAAAAA-A--CACATGTATATATAT
18939914 ATTAT-AAAAACACATGTATATATAT
1 ATTATAAAAAACACATGTATATATAT
* *
18939939 ATTAT-AAAAACACATGTATGTGTAT
1 ATTATAAAAAACACATGTATATATAT
18939964 ATATATAA
1 AT-TATAA
18939972 CGAAGATTTC
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
25 40 0.74
26 3 0.06
27 2 0.04
28 4 0.07
29 5 0.09
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.37
Consensus pattern (26 bp):
ATTATAAAAAACACATGTATATATAT
Found at i:18939927 original size:25 final size:25
Alignment explanation
Indices: 18939899--18939971 Score: 119
Period size: 25 Copynumber: 2.9 Consensus size: 25
18939889 TAAAAATATG
18939899 CACATGTATATATATATTATAAAAA
1 CACATGTATATATATATTATAAAAA
18939924 CACATGTATATATATATTATAAAAA
1 CACATGTATATATATATTATAAAAA
* *
18939949 CACATGTATGTGTATATATATAA
1 CACATGTATATATATAT-TATAA
18939972 CGAAGATTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 40 0.89
26 5 0.11
ACGTcount: A:0.48, C:0.08, G:0.07, T:0.37
Consensus pattern (25 bp):
CACATGTATATATATATTATAAAAA
Found at i:18942448 original size:89 final size:88
Alignment explanation
Indices: 18942293--18942865 Score: 344
Period size: 89 Copynumber: 6.7 Consensus size: 88
18942283 TTTGTTTCCA
* * * **
18942293 AAATTAAAAGTAAATAAAATCTGTTTCGAGATTTATTCTCGTTGTTCAACGGATTTTATTCCATT
1 AAATTAAAGGTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCATT
* *
18942358 ATTTTGATTTTATTTTCAAACGGG
66 ATTTTG-TTTTATTTCCAAACGAG
**
18942382 AAATTAAAGGTAAATAAAAT-TCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTATAT
1 AAATTAAAGGTAAATAAAATCT-GTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCAT
*
18942446 TATTTTGTTTCTATTTCCAAATGAG
65 TATTTTGTTT-TATTTCCAAACGAG
* * * *
18942471 AAATTAAAGGTAAATAAAATCTATTTCGGGATTGATTCCCGCCGTTTAAC-AATTTTATTCCA-T
1 AAATTAAAGGTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCATT
*
18942534 ATTTTGTTTTATTTCTAAAAACGAG
66 ATTTTGTTTTATTTC--CAAACGAG
** * * *
18942559 ----T--A---AAATAAAAT-TAGTTTTAGGATTGACTCCCACCGTTCAACGGA-TTTATT--A-
1 AAATTAAAGGTAAATAAAATCT-GTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCAT
* * * **
18942610 CATTTTGATTTTGTTGCCAAAAATTAG
65 TATTTTG-TTTTATTTCC--AAACGAG
* * * * **
18942637 AAATTAAA-TTAAATTAAATCTGTTTCGGGATTTATTCCCACCGTTTATAATGATTTT-TT---T
1 AAATTAAAGGTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCA-ACGGATTTTATTCCAT
* *
18942697 GA-TTTGATATT-TTTCCAAAAACGAG
65 TATTTTG-TTTTATTTCC--AAACGAG
* * * * * * * *
18942722 AAATTAAA-TTAAATAAAATCTATTTCGGTATTTCTTCCCGTCGTTTAACAAGATTGTATT---T
1 AAATTAAAGGTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAAC-GGATTTTATTCCAT
* * *
18942783 TATTTTATTTTATTTCCTAA-TATG
65 TATTTTGTTTTATTTCCAAACGA-G
* * * * *
18942807 -AATTGAA-TTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATT
1 AAATTAAAGGTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAAC-GGATTTTATT
18942866 TGATTTTATT
Statistics
Matches: 392, Mismatches: 65, Indels: 59
0.76 0.13 0.11
Matches are distributed among these distances:
77 7 0.02
78 13 0.03
79 37 0.09
80 1 0.00
82 2 0.01
84 56 0.14
85 60 0.15
86 50 0.13
87 25 0.06
88 22 0.06
89 118 0.30
90 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.43
Consensus pattern (88 bp):
AAATTAAAGGTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCATT
ATTTTGTTTTATTTCCAAACGAG
Found at i:18942733 original size:85 final size:82
Alignment explanation
Indices: 18942613--18943107 Score: 312
Period size: 84 Copynumber: 5.9 Consensus size: 82
18942603 TTTATTACAT
* *
18942613 TTTGATTTTGTTGCCAAAAATTAGAAATTAAATTAAATTAAATCTGTTTCGGGATTTATTCCCAC
1 TTTGATTTT-TT-CCAAAAA--AGAAATTAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGC
*
18942678 CGTTTATA-ATGATTTTTTTGA
62 CGTTTA-ACAAGATTTTTTTGA
* * * *
18942699 TTTGATATTTTTCCAAAAACGAGAAATTAAATTAAATAAAATCTATTTCGGTATTTCTTCCCGTC
1 TTTGAT-TTTTTCCAAAAA--AGAAATTAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCC
18942764 GTTTAACAAGATTGTATTTT-A
63 GTTTAACAAGATT-T-TTTTGA
* * * * * *
18942785 TTTTATTTTATTTCCTAATATG-AATTGAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCG
1 TTTGA-TTT-TTTCCAAAAAAGAAATTAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCG
18942849 TTTAACAAGATTTTATTTGA
64 TTTAACAAGATTTT-TTTGA
* * *** * * * * * *
18942869 TTTTATTTTGTTTCCTAATTTG-GATTGAATTAAATAAAATCTATTTCGAGATTTATTCCCTCCA
1 TTTGA-TTT-TTTCCAAAAAAGAAATTAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCG
* *
18942933 TTTAATAAGATTTTATTTTA
64 TTTAACAAGATTTT-TTTGA
* * *** * * * * *
18942953 TTT--TATTTT-CTAATTTG-AATTGAATTAAACAAAATATGTTTTGGGATTTATTCCCGCTGTT
1 TTTGATTTTTTCCAAAAAAGAAATTAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTT
*
18943014 TAACAAGATTTTATTCGA
66 TAACAAGATTTT-TTTGA
* ** * * * * * *
18943032 TATTGGTTTGTTTCCAAACAAAGGCA-T-AATCAAAT-AATTCTGTTTCAGGACTTATTCTCTCC
1 T-TTGATTT-TTTCCAAA-AAAGAAATTAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCC
18943094 GTTTAAC-AGATTTT
63 GTTTAACAAGATTTT
18943108 AATTTTATTT
Statistics
Matches: 336, Mismatches: 58, Indels: 34
0.79 0.14 0.08
Matches are distributed among these distances:
79 59 0.18
80 5 0.01
81 2 0.01
82 10 0.03
83 33 0.10
84 136 0.40
85 58 0.17
86 17 0.05
87 16 0.05
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46
Consensus pattern (82 bp):
TTTGATTTTTTCCAAAAAAGAAATTAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTT
TAACAAGATTTTTTTGA
Found at i:18942832 original size:84 final size:84
Alignment explanation
Indices: 18942723--18943028 Score: 365
Period size: 84 Copynumber: 3.7 Consensus size: 84
18942713 AAAAACGAGA
* * *
18942723 AATTAAATTAAATAAAATCTATTTCGGTATTTCTTCCCGTCGTTTAACAAGATTGTATTTTATTT
1 AATTGAATTAAATAAAATCTATTTCGGGATTTATTCCCGTCGTTTAACAAGATTGTATTTTATTT
*
18942788 TATTTTATTTCCTAATATG
66 TATTTTATTTCCTAATTTG
* * * * *
18942807 AATTGAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTTGATTT
1 AATTGAATTAAATAAAATCTATTTCGGGATTTATTCCCGTCGTTTAACAAGATTGTATTTTATTT
*
18942872 TATTTTGTTTCCTAATTTG
66 TATTTTATTTCCTAATTTG
* * * *
18942891 GATTGAATTAAATAAAATCTATTTCGAGATTTATTCCC-TCCATTTAA-TA-A--G-ATTTTATT
1 AATTGAATTAAATAAAATCTATTTCGGGATTTATTCCCGT-CGTTTAACAAGATTGTATTTTATT
*
18942950 TTATTTTATTTTCTAATTTG
65 TTATTTTATTTCCTAATTTG
* * * * *
18942970 AATTGAATTAAACAAAATATGTTTTGGGATTTATTCCCG-CTGTTTAACAAGATTTTATT
1 AATTGAATTAAATAAAATCTATTTCGGGATTTATTCCCGTC-GTTTAACAAGATTGTATT
18943029 CGATATTGGT
Statistics
Matches: 184, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 62 0.34
80 1 0.01
81 1 0.01
82 1 0.01
83 1 0.01
84 117 0.64
ACGTcount: A:0.31, C:0.11, G:0.10, T:0.48
Consensus pattern (84 bp):
AATTGAATTAAATAAAATCTATTTCGGGATTTATTCCCGTCGTTTAACAAGATTGTATTTTATTT
TATTTTATTTCCTAATTTG
Found at i:18943001 original size:79 final size:79
Alignment explanation
Indices: 18942638--18943028 Score: 340
Period size: 84 Copynumber: 4.7 Consensus size: 79
18942628 AAAAATTAGA
* * * * *
18942638 AATTAAATTAAATTAAATCTGTTTCGGGATTTATTCCCACCGTTTATA-ATGATTTT-TTTGATT
1 AATTGAATTAAATAAAATCTGTTTCGGGATTTATTCCCTCCGTTTA-ACAAGATTTTATTTTATT
* ***
18942701 TGATATTTTTCCAAAAACGAG
65 T--TA-TTTT-C--TAATTTG
* * * *
18942722 AAATTAAATTAAATAAAATCTATTTCGGTATTTCTTCCCGT-CGTTTAACAAGATTGTATTTTAT
1 -AATTGAATTAAATAAAATCTGTTTCGGGATTTATTCCC-TCCGTTTAAC-A-A--G-ATTTTAT
* *
18942786 TTTATTTTATTTCCTAATATG
59 TTTATTTTATTTTCTAATTTG
*
18942807 AATTGAATTAAATAAAATCTGTTTCGGGATTTATT-CCTGCCGTTTAACAAGATTTTATTTGATT
1 AATTGAATTAAATAAAATCTGTTTCGGGATTTATTCCCT-CCGTTTAACAAGATTTTATTTTATT
18942871 TTATTTTGTTTCCTAATTTG
65 TTA---T-TTT-CTAATTTG
* * * * *
18942891 GATTGAATTAAATAAAATCTATTTCGAGATTTATTCCCTCCATTTAATAAGATTTTATTTTATTT
1 AATTGAATTAAATAAAATCTGTTTCGGGATTTATTCCCTCCGTTTAACAAGATTTTATTTTATTT
18942956 TATTTTCTAATTTG
66 TATTTTCTAATTTG
* * * * *
18942970 AATTGAATTAAACAAAATATGTTTTGGGATTTATTCCCGCTGTTTAACAAGATTTTATT
1 AATTGAATTAAATAAAATCTGTTTCGGGATTTATTCCCTCCGTTTAACAAGATTTTATT
18943029 CGATATTGGT
Statistics
Matches: 255, Mismatches: 35, Indels: 38
0.78 0.11 0.12
Matches are distributed among these distances:
79 72 0.28
80 4 0.02
81 1 0.00
82 3 0.01
83 5 0.02
84 104 0.41
85 46 0.18
86 1 0.00
87 1 0.00
88 3 0.01
89 3 0.01
90 5 0.02
91 7 0.03
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (79 bp):
AATTGAATTAAATAAAATCTGTTTCGGGATTTATTCCCTCCGTTTAACAAGATTTTATTTTATTT
TATTTTCTAATTTG
Found at i:18944914 original size:43 final size:43
Alignment explanation
Indices: 18944866--18944950 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
18944856 CTGATAGGTG
18944866 TTTTCATGAAAGACCATGTCTAGGAC-GTTGGCATCGACTTGTA
1 TTTTCATGAAAGACCATGTCTAGGACAG-TGGCATCGACTTGTA
* * * * *
18944909 TTTTCATGTAAGACCCTGTTTGGGACAGTGGCATCGATTTGT
1 TTTTCATGAAAGACCATGTCTAGGACAGTGGCATCGACTTGT
18944951 GATTACATGT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (43 bp):
TTTTCATGAAAGACCATGTCTAGGACAGTGGCATCGACTTGTA
Found at i:18953145 original size:43 final size:43
Alignment explanation
Indices: 18953080--18953188 Score: 114
Period size: 43 Copynumber: 2.5 Consensus size: 43
18953070 TTGATAAGTG
18953080 TTTTCATGTAAGACCACATCTGGGAC-GTTGGCATCGACTTGTA
1 TTTTCATGTAAGACCACATCTGGGACAG-TGGCATCGACTTGTA
* *** *
18953123 TTTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATTTGTGA
1 TTTTCATGTAAGACCACATCTGGGACAGTGGCATCGACTTGT-A
* * *
18953167 -TTACATGTAAGAACACGTCTGG
1 TTTTCATGTAAGACCACATCTGG
18953189 AATGTTGGCG
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
43 52 0.96
44 2 0.04
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
TTTTCATGTAAGACCACATCTGGGACAGTGGCATCGACTTGTA
Found at i:18954453 original size:38 final size:38
Alignment explanation
Indices: 18954397--18954482 Score: 154
Period size: 38 Copynumber: 2.2 Consensus size: 38
18954387 GCTAAATGAA
18954397 ATATATGTGTGAATCGGCATTAGTAATTATAATGTACTC
1 ATAT-TGTGTGAATCGGCATTAGTAATTATAATGTACTC
*
18954436 ATATTGTGTGAATCGGCATTTGTAATTATAATGTACTC
1 ATATTGTGTGAATCGGCATTAGTAATTATAATGTACTC
18954474 ATATTGTGT
1 ATATTGTGT
18954483 AATTTGGTGT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 42 0.91
39 4 0.09
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (38 bp):
ATATTGTGTGAATCGGCATTAGTAATTATAATGTACTC
Found at i:18962282 original size:18 final size:18
Alignment explanation
Indices: 18962252--18962303 Score: 77
Period size: 18 Copynumber: 2.8 Consensus size: 18
18962242 TTAAATGATT
18962252 TTTTAATTAAGTAATAATA
1 TTTTAA-TAAGTAATAATA
18962271 TTTTAATAAGTAATAATA
1 TTTTAATAAGTAATAATA
* *
18962289 TTTTATTAATTAATA
1 TTTTAATAAGTAATA
18962304 TTATAATACA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 25 0.81
19 6 0.19
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (18 bp):
TTTTAATAAGTAATAATA
Found at i:18963087 original size:5 final size:5
Alignment explanation
Indices: 18963072--18963104 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
18963062 ATATAACTAG
18963072 TTATAT TTATT TTATT TTATT TTATT TTATT TT
1 TTAT-T TTATT TTATT TTATT TTATT TTATT TT
18963105 TATGAGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:18972508 original size:50 final size:50
Alignment explanation
Indices: 18972448--18972550 Score: 188
Period size: 50 Copynumber: 2.1 Consensus size: 50
18972438 TAGAGAGAAC
*
18972448 AAACAGATACAAGAAAGAAGTAAAAACTATCAAGCCATGGACATAATGAT
1 AAACAAATACAAGAAAGAAGTAAAAACTATCAAGCCATGGACATAATGAT
*
18972498 AAACAAATACAAGAAATAAGTAAAAACTATCAAGCCATGGACATAATGAT
1 AAACAAATACAAGAAAGAAGTAAAAACTATCAAGCCATGGACATAATGAT
18972548 AAA
1 AAA
18972551 TAAGGCCTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.56, C:0.14, G:0.14, T:0.17
Consensus pattern (50 bp):
AAACAAATACAAGAAAGAAGTAAAAACTATCAAGCCATGGACATAATGAT
Found at i:18972848 original size:103 final size:103
Alignment explanation
Indices: 18972655--18972859 Score: 286
Period size: 103 Copynumber: 2.0 Consensus size: 103
18972645 TACCAGGGAA
* ** *
18972655 TTCTTATGGAAATAAGATATATGGCAATAAAGACACAACACGAAGTTTAGTCTAGTAGAATACAA
1 TTCTTATGGAAATAAGATATATGGCAATAAAGACACAACACGAAGTTCAAACTACTAGAATACAA
* * *
18972720 GCAATGGAAAAATCAACACTGTACTCAGAATAGAAAAT
66 ACAACGGAAAAATCAACACTATACTCAGAATAGAAAAT
* * *
18972758 TTCTTATGGCAAT-AGCATATATGGCAATAAAGACACAACAGGGAGTTCAAACTACTAGAATACA
1 TTCTTATGGAAATAAG-ATATATGGCAATAAAGACACAACACGAAGTTCAAACTACTAGAATACA
* *
18972822 AACAACGGAAAAGTCAGCACTATACTCAGAATAGAAAA
65 AACAACGGAAAAATCAACACTATACTCAGAATAGAAAA
18972860 ATCAGATATA
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
102 2 0.02
103 87 0.98
ACGTcount: A:0.46, C:0.16, G:0.17, T:0.21
Consensus pattern (103 bp):
TTCTTATGGAAATAAGATATATGGCAATAAAGACACAACACGAAGTTCAAACTACTAGAATACAA
ACAACGGAAAAATCAACACTATACTCAGAATAGAAAAT
Found at i:18972998 original size:9 final size:9
Alignment explanation
Indices: 18972986--18973049 Score: 62
Period size: 9 Copynumber: 7.2 Consensus size: 9
18972976 TTAGTAGTGT
18972986 TATAGTATA
1 TATAGTATA
18972995 TATAGTATA
1 TATAGTATA
18973004 TATAGTATA
1 TATAGTATA
* *
18973013 AATA-TATG
1 TATAGTATA
18973021 TATAG-ATA
1 TATAGTATA
*
18973029 TAT-GTTTA
1 TATAGTATA
18973037 TACTAGTACTA
1 TA-TAGTA-TA
18973048 TA
1 TA
18973050 CGAATTGGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
7 1 0.02
8 15 0.34
9 22 0.50
10 2 0.05
11 4 0.09
ACGTcount: A:0.42, C:0.03, G:0.11, T:0.44
Consensus pattern (9 bp):
TATAGTATA
Found at i:18973029 original size:12 final size:12
Alignment explanation
Indices: 18972995--18973033 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
18972985 TTATAGTATA
18972995 TATAGTATATATAG
1 TATAG-ATATAT-G
*
18973009 TATAAATATATG
1 TATAGATATATG
18973021 TATAGATATATG
1 TATAGATATATG
18973033 T
1 T
18973034 TTATACTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 13 0.57
13 6 0.26
14 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.44
Consensus pattern (12 bp):
TATAGATATATG
Found at i:18977088 original size:186 final size:187
Alignment explanation
Indices: 18976839--18977214 Score: 558
Period size: 187 Copynumber: 2.0 Consensus size: 187
18976829 CAATTTATTT
* * * * *
18976839 TGAGGGGCTTTGAGGAATGTTGTTGGAATTAAATGAACTAGTTAGTGAAACTTATTTAAGATGAA
1 TGAGGGACTTTGAGGAATGCTATTGGAATGAAATGAACTAGTTAGTGAAACTTATTCAAGATGAA
* * * *
18976904 AGATGAA-TTTATAGTGGGAGACTTTGGTCTGTTCTTTTGTTAAGTTTTTCCTATGTTTGTTGTG
66 AAATGAAGTTTATAGTGGGAGACTTTGGTCCGTTCTTTTGTTAAATTTTTCCTAAGTTTGTTGTG
* * * * * *
18976968 GTATGCAAAGTAAAATGCAGGTAGCAATAACATGCATTTCTTATTGATAGGTGCTTG
131 GTATGCAAAATAAAATACAGCTAGCAATAACATGCACTTCTTACTGACAGGTGCTTG
18977025 TGAGGGACTTTGAAGG-ATGCTATTGGAATGAAATGAACTAGTTAGTGAAACTTATTCAAGATGA
1 TGAGGGACTTTG-AGGAATGCTATTGGAATGAAATGAACTAGTTAGTGAAACTTATTCAAGATGA
* *
18977089 AAAATGAAGTTTATAGTGGGAGACTTTGGTCCGTTCTTTTGTTAAATTTTTCCTAAGTTTTTTTT
65 AAAATGAAGTTTATAGTGGGAGACTTTGGTCCGTTCTTTTGTTAAATTTTTCCTAAGTTTGTTGT
* *
18977154 GGTTTGCAAAATAAAATACAGCTAGCAATAACATGTACTTCTTACTGACAGGTGCTTG
130 GGTATGCAAAATAAAATACAGCTAGCAATAACATGCACTTCTTACTGACAGGTGCTTG
18977212 TGA
1 TGA
18977215 TGACACCTCA
Statistics
Matches: 169, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
186 62 0.37
187 107 0.63
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.38
Consensus pattern (187 bp):
TGAGGGACTTTGAGGAATGCTATTGGAATGAAATGAACTAGTTAGTGAAACTTATTCAAGATGAA
AAATGAAGTTTATAGTGGGAGACTTTGGTCCGTTCTTTTGTTAAATTTTTCCTAAGTTTGTTGTG
GTATGCAAAATAAAATACAGCTAGCAATAACATGCACTTCTTACTGACAGGTGCTTG
Found at i:18978952 original size:19 final size:19
Alignment explanation
Indices: 18978916--18978954 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
18978906 TTATGGTTAA
* * *
18978916 AGGTTTAGGGTTAGGGTTT
1 AGGTTTAAGATTAAGGTTT
18978935 AGGTTTAAGATTAAGGTTT
1 AGGTTTAAGATTAAGGTTT
18978954 A
1 A
18978955 CTAGTGTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.41
Consensus pattern (19 bp):
AGGTTTAAGATTAAGGTTT
Found at i:18979291 original size:387 final size:385
Alignment explanation
Indices: 18978576--18979301 Score: 943
Period size: 387 Copynumber: 1.9 Consensus size: 385
18978566 TTATAGGTAC
* * * * * * *
18978576 AAATATGTTCTTATTCCCTCAAATTTTGATTAAATATGTGAAAAGCAAAGGGAGGTTCTCTTAGT
1 AAATATGTTCTTATTCCCTAAAATTTCGATTAAAGATGTGAAAAGAAAAGGGAGATTCCCTCAGT
* * ** *
18978641 ATTATGTTAAGGGCAAATACGTAAAAACACTGCATAAAGTATGACGATAATTACCCTTCTAGAGC
66 ATTATGTAAAGGGAAAATACGTAAAAACACCCCATAAAGGATGACGATAATTACCCTTCTAGAGC
* * * * *
18978706 AAGAAAAACTAGAAAAAAAATATTAGAATAAGATTTGTAATGATTAACATGATGGCACGTATGTC
131 AAGAAAAACTAGAAAAAAAAGATTAGAACAAGATTTATAATGATCAACATGAAGGCACGTATGTC
* * * *
18978771 TCGGAATATAAATCATGCTTCCACAACATTTGGCCTCAAGAAGTTATCAATACTTAATTTTACTT
196 TCGGAATATAAATCATGCTTCCACAACATTTAGCCTCAACAAGTTATCAATACTTAATTTCACTG
* * * ** *
18978836 GTATAATTATGTTCTTCTTCCCTCAATTTTTGGTTGAACATGTGAAAAGCAAAGGGAGGTTCCCT
261 GTAAAAATATGTTCTTCTTCCCTCAAATTTCAGTTGAACATGTGAAAAGCAAAGGGACGTTCCCT
18978901 CAGTATTATGGTTAAAGGTTTAGGGTTAGGGTTTAGGTTTAAGATTAAGGTTTACTAGTGT
326 CAGTATTAT-GTTAAAGGTTTAGGGTTAGGGTTTAGGTTTAAGATTAAGGTTTACTAGTGT
* * *
18978962 AAATATGTTTTTCTTCCCTAAAATTTCGATTGAAGATGTGAAAAGAAAAGGGAGATTCCCTCAGT
1 AAATATGTTCTTATTCCCTAAAATTTCGATTAAAGATGTGAAAAGAAAAGGGAGATTCCCTCAGT
* ** * * *
18979027 ATTATGTAAAGGGAAAATATGTAAATGCACCCCATAAAGGATTAGGAATCATTACCCTTCTAGAG
66 ATTATGTAAAGGGAAAATACGTAAAAACACCCCATAAAGGATGACG-ATAATTACCCTTCTAGAG
* * * * *
18979092 TAAGAACAACTAGCAAAAAAAGATTAGAACAAGATTTATAATGATCAACGTGAAGGCACTTATGT
130 CAAGAAAAACTAGAAAAAAAAGATTAGAACAAGATTTATAATGATCAACATGAAGGCACGTATGT
** * * *
18979157 CTCGGGCTATAAATCATGCTTGCACAACATTTAGTCTCAACAAGTTATCAAT-GTGTAATTTCA-
195 CTCGGAATATAAATCATGCTTCCACAACATTTAGCCTCAACAAGTTATCAATACT-TAATTTCAC
* * * * *
18979220 TCGGTAAAAATATGTTTTTCTTCCTTCAAATTTCAGTTGAACGTGTGAAAAGCAAAGTGACGTTT
259 T-GGTAAAAATATGTTCTTCTTCCCTCAAATTTCAGTTGAACATGTGAAAAGCAAAGGGACGTTC
18979285 CCTCAGTATTATGTTAA
323 CCTCAGTATTATGTTAA
18979302 GGGCAAATAC
Statistics
Matches: 286, Mismatches: 51, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
386 98 0.34
387 188 0.66
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (385 bp):
AAATATGTTCTTATTCCCTAAAATTTCGATTAAAGATGTGAAAAGAAAAGGGAGATTCCCTCAGT
ATTATGTAAAGGGAAAATACGTAAAAACACCCCATAAAGGATGACGATAATTACCCTTCTAGAGC
AAGAAAAACTAGAAAAAAAAGATTAGAACAAGATTTATAATGATCAACATGAAGGCACGTATGTC
TCGGAATATAAATCATGCTTCCACAACATTTAGCCTCAACAAGTTATCAATACTTAATTTCACTG
GTAAAAATATGTTCTTCTTCCCTCAAATTTCAGTTGAACATGTGAAAAGCAAAGGGACGTTCCCT
CAGTATTATGTTAAAGGTTTAGGGTTAGGGTTTAGGTTTAAGATTAAGGTTTACTAGTGT
Found at i:18979583 original size:264 final size:260
Alignment explanation
Indices: 18978998--18979782 Score: 835
Period size: 264 Copynumber: 3.0 Consensus size: 260
18978988 CGATTGAAGA
* * * * *
18978998 TGTGAAAAGAAAAGGGAGATTCCCTCAGTATTATGTAAAGGGAAAATATGTAAATGCACCCCATA
1 TGTGAAAAGAAAA-GGAGATTCCCTCAGTATTATGTTAAGGGCAAATACGTAAATACACCGCATA
* * * * **
18979063 AAGGATTAGGAATCATTACCCTTCTAGAGTAAGAACAACT-AGCAAAAAAAGATTAGAACAAGAT
65 AAGTATGA-GAATCATTACCCTTCTAGAGCAACAACAACTGAAAAAAAAAAGATTAGAACAAGAT
* * * * * *
18979127 TTATAATGATCAACGTGAAGGCACTTATGTCTCGGGCTATAAATCATGCTTGCACAACATTTAGT
129 TTGTAATGATCAATGTGAAGGCACGTATGTCTTGGACTATAAATCATGCTTGCACAACATTTAGC
* * ** ** * * *
18979192 CTCAACAAGTTATCAATGTGTAATTTCATCGGTAAAAATATGTTTTTCTTCCTTCAAATTTCAGT
194 CTCAAGAAGTTATCAATATGTAATTTCA-CATTGTAATTAAG---TTCTTCCCTCAAATTTCAGT
**
18979257 TGAACG
255 AAAACG
* * **
18979263 TGTGAAAAGCAAAGTGACG-TTTCCTCAGTATTATGTTAAGGGCAAATACGTAAATACATTGCAT
1 TGTGAAAAGAAAAG-GA-GATTCCCTCAGTATTATGTTAAGGGCAAATACGTAAATACACCGCAT
* **
18979327 AAATTATGACGAATCATTACCCTTCTAGAGCAACAACAACTGGAAAAAAAAAAGATTAGAATGAG
64 AAAGTATGA-GAATCATTACCCTTCTAGAGCAACAACAACT-GAAAAAAAAAAGATTAGAACAAG
* * * * * *
18979392 ATTTGTAATGATCAATATAAAGGAACGTATGTCTTGGACTATAAATCATGTTTGAACAACATTTG
127 ATTTGTAATGATCAATGTGAAGGCACGTATGTCTTGGACTATAAATCATGCTTGCACAACATTTA
* * * **
18979457 GCCTCAAGAAGTTACCAATATGAAATTTCACAATTGTAATTACGTTCTTCCCTCAAATTTTGGTA
192 GCCTCAAGAAGTTATCAATATGTAATTTCAC-ATTGTAATTAAGTTCTTCCCTCAAATTTCAGTA
*
18979522 AAATG
256 AAACG
* *
18979527 TGTGAAAAGTAAATGGAGATTCCCTTC-GTATTATGTTAAGGGCAAATACATAAATACACCGCAT
1 TGTGAAAAG-AAAAGGAGATTCCC-TCAGTATTATGTTAAGGGCAAATACGTAAATACACCGCAT
* **
18979591 AAAGTATGAGAAATCATTACCCTTCTGGAGCAACAACAACTG-CTAAAAAAAGATTAGAACAAGA
64 AAAGTATGAG-AATCATTACCCTTCTAGAGCAACAACAACTGAAAAAAAAAAGATTAGAACAAGA
* *
18979655 TTTGTAAAT-ATCAATGTGGAGGCACGTATGTCTTAGACTATAAATCATGCTTGCACAACATTTA
128 TTTGT-AATGATCAATGTGAAGGCACGTATGTCTTGGACTATAAATCATGCTTGCACAACATTTA
* * *
18979719 GCCTGAAGAACTTATCAATACT-TAATTTCACATGTGTGATTAAGTTCTTCTTCCCTCAAATTTC
192 GCCTCAAGAAGTTATCAATA-TGTAATTTCACAT-TGTAATTAAG---TTCTTCCCTCAAATTTC
18979783 GATTGATAAT
Statistics
Matches: 431, Mismatches: 74, Indels: 30
0.81 0.14 0.06
Matches are distributed among these distances:
261 2 0.00
262 103 0.24
263 7 0.02
264 107 0.25
265 107 0.25
266 2 0.00
267 103 0.24
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (260 bp):
TGTGAAAAGAAAAGGAGATTCCCTCAGTATTATGTTAAGGGCAAATACGTAAATACACCGCATAA
AGTATGAGAATCATTACCCTTCTAGAGCAACAACAACTGAAAAAAAAAAGATTAGAACAAGATTT
GTAATGATCAATGTGAAGGCACGTATGTCTTGGACTATAAATCATGCTTGCACAACATTTAGCCT
CAAGAAGTTATCAATATGTAATTTCACATTGTAATTAAGTTCTTCCCTCAAATTTCAGTAAAACG
Found at i:18986477 original size:37 final size:36
Alignment explanation
Indices: 18986401--18986477 Score: 84
Period size: 37 Copynumber: 2.1 Consensus size: 36
18986391 ATGTTTTTTT
* * *
18986401 TATTTAATTATAATATATTTTTTAAAAATTTTATTA
1 TATTTAATTATAATATATTTTTTAAAAATATAATGA
* *
18986437 TATTATAATTAT-TTATATTTTTTTACAAATATAATGA
1 TATT-TAATTATAATATA-TTTTTTAAAAATATAATGA
18986474 TATT
1 TATT
18986478 CATATTGAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 8 0.24
37 26 0.76
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (36 bp):
TATTTAATTATAATATATTTTTTAAAAATATAATGA
Found at i:18993779 original size:3 final size:3
Alignment explanation
Indices: 18993771--18993802 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
18993761 TGCAATACTT
18993771 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
18993803 TTGCAATTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:19016543 original size:30 final size:30
Alignment explanation
Indices: 19016507--19016568 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
19016497 AGGAAACACG
19016507 TTATAATTCTAGCTATTCACTTTTCACATA
1 TTATAATTCTAGCTATTCACTTTTCACATA
*
19016537 TTATAATTCTAGTTATTCACTTTTCACATA
1 TTATAATTCTAGCTATTCACTTTTCACATA
19016567 TT
1 TT
19016569 TTATTAGAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.29, C:0.18, G:0.03, T:0.50
Consensus pattern (30 bp):
TTATAATTCTAGCTATTCACTTTTCACATA
Found at i:19021110 original size:14 final size:14
Alignment explanation
Indices: 19021091--19021128 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
19021081 GTTTGCCAGT
* *
19021091 AAAATGTTTTCTGG
1 AAAATGATTTCTAG
19021105 AAAATGATTTCTAG
1 AAAATGATTTCTAG
19021119 AAAATGATTT
1 AAAATGATTT
19021129 ACTTTCTAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.39
Consensus pattern (14 bp):
AAAATGATTTCTAG
Found at i:19021154 original size:19 final size:19
Alignment explanation
Indices: 19021112--19021151 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
19021102 TGGAAAATGA
19021112 TTTCTAGAAAATGATTTAC
1 TTTCTAGAAAATGATTTAC
*
19021131 TTTCTAG-AAATGATTTCC
1 TTTCTAGAAAATGATTTAC
19021149 TTT
1 TTT
19021152 TCTGGTGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (19 bp):
TTTCTAGAAAATGATTTAC
Found at i:19022550 original size:32 final size:32
Alignment explanation
Indices: 19022504--19022564 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
19022494 TGTCAATCAT
19022504 TTCAATAACCAACAAGCTTAAAACATAATAAA
1 TTCAATAACCAACAAGCTTAAAACATAATAAA
* *
19022536 TTCAATATCTAACAAGCTTAAAACATAAT
1 TTCAATAACCAACAAGCTTAAAACATAAT
19022565 CAATATCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.26
Consensus pattern (32 bp):
TTCAATAACCAACAAGCTTAAAACATAATAAA
Found at i:19022571 original size:27 final size:30
Alignment explanation
Indices: 19022504--19022577 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 30
19022494 TGTCAATCAT
* *
19022504 TTCAATAACCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAAC--AATAAA
19022536 TTCAATATCTAACAAGCTTAAAAC-AT-AA
1 TTCAATATCTAACAAGCTTAAAACAATAAA
19022564 -TCAATATCTAACAA
1 TTCAATATCTAACAA
19022578 ATTCAAGACA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.35
28 2 0.05
29 2 0.05
32 22 0.55
ACGTcount: A:0.53, C:0.19, G:0.03, T:0.26
Consensus pattern (30 bp):
TTCAATATCTAACAAGCTTAAAACAATAAA
Found at i:19022588 original size:27 final size:27
Alignment explanation
Indices: 19022537--19022591 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
19022527 CATAATAAAT
*
19022537 TCAATATCTAACAAGCTTAAAACATAA
1 TCAATATCTAACAAGATTAAAACATAA
*
19022564 TCAATATCTAACAA-ATTCAAGACATAA
1 TCAATATCTAACAAGATT-AAAACATAA
19022591 T
1 T
19022592 AATTTCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 23 0.92
ACGTcount: A:0.51, C:0.18, G:0.04, T:0.27
Consensus pattern (27 bp):
TCAATATCTAACAAGATTAAAACATAA
Found at i:19023268 original size:91 final size:91
Alignment explanation
Indices: 19023113--19023293 Score: 344
Period size: 91 Copynumber: 2.0 Consensus size: 91
19023103 TATGGGGTAA
* *
19023113 TATATCCATTTCGGATGCCATATCTAGCATCAGCAAGATAATATTTACCTACAATTTTACAAAAC
1 TATATCCATTTCGGATGCCATATCCAGCATCAGCAAGATAATATTTACCCACAATTTTACAAAAC
19023178 ATAATTAATACTAATAAATTATGAGT
66 ATAATTAATACTAATAAATTATGAGT
19023204 TATATCCATTTCGGATGCCATATCCAGCATCAGCAAGATAATATTTACCCACAATTTTACAAAAC
1 TATATCCATTTCGGATGCCATATCCAGCATCAGCAAGATAATATTTACCCACAATTTTACAAAAC
19023269 ATAATTAATACTAATAAATTATGAG
66 ATAATTAATACTAATAAATTATGAG
19023294 CTTACTAGAA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 88 1.00
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.33
Consensus pattern (91 bp):
TATATCCATTTCGGATGCCATATCCAGCATCAGCAAGATAATATTTACCCACAATTTTACAAAAC
ATAATTAATACTAATAAATTATGAGT
Found at i:19029339 original size:42 final size:42
Alignment explanation
Indices: 19029275--19029401 Score: 157
Period size: 42 Copynumber: 3.0 Consensus size: 42
19029265 GTTTCCATTG
* * *
19029275 AACCCTAATGGGTTTCTATTCAGCTCTTTTGAGCTTCTGTTT
1 AACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCTGTTT
* *
19029317 AACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCTT-TCGTTC
1 AACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCT-GTTT
* * * *
19029359 AACCCTTATGGGTTTCTGTTTAGCACTTATGTGCTTCTATTT
1 AACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCTGTTT
19029401 A
1 A
19029402 GCCTTCGGGC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
41 1 0.01
42 70 0.97
43 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (42 bp):
AACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCTGTTT
Found at i:19029347 original size:21 final size:21
Alignment explanation
Indices: 19029321--19029389 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
19029311 CTGTTTAACC
*
19029321 CTTATGGGTTTCCGTTCAGCT
1 CTTATGGGTTTCCGTTCAGCA
* * *
19029342 CTTATGAGCTTT-CGTTCAACC
1 CTTATG-GGTTTCCGTTCAGCA
* *
19029363 CTTATGGGTTTCTGTTTAGCA
1 CTTATGGGTTTCCGTTCAGCA
19029384 CTTATG
1 CTTATG
19029390 TGCTTCTATT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 4 0.11
21 30 0.79
22 4 0.11
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.43
Consensus pattern (21 bp):
CTTATGGGTTTCCGTTCAGCA
Found at i:19029396 original size:21 final size:21
Alignment explanation
Indices: 19029363--19029415 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
19029353 TCGTTCAACC
* *
19029363 CTTATGGGTTTCTGTTTAGCA
1 CTTATGGGCTTCTATTTAGCA
*
19029384 CTTATGTGCTTCTATTTAGC-
1 CTTATGGGCTTCTATTTAGCA
*
19029404 CTT-CGGGCTTCT
1 CTTATGGGCTTCT
19029416 GAAAATGATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 7 0.26
20 3 0.11
21 17 0.63
ACGTcount: A:0.11, C:0.21, G:0.21, T:0.47
Consensus pattern (21 bp):
CTTATGGGCTTCTATTTAGCA
Found at i:19033817 original size:21 final size:21
Alignment explanation
Indices: 19033788--19033827 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
19033778 ATGAACAATA
*
19033788 TAATAGTTTTGTCTTTTAACT
1 TAATAGTTTTGACTTTTAACT
*
19033809 TAATTGTTTTGACTTTTAA
1 TAATAGTTTTGACTTTTAA
19033828 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.07, G:0.10, T:0.57
Consensus pattern (21 bp):
TAATAGTTTTGACTTTTAACT
Found at i:19035551 original size:21 final size:21
Alignment explanation
Indices: 19035527--19035566 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
19035517 CAACATGGTA
19035527 AGTTAACTGGCCACATCAGCT
1 AGTTAACTGGCCACATCAGCT
*
19035548 AGTTAACTTGCCACATCAG
1 AGTTAACTGGCCACATCAG
19035567 TGGTCCCGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (21 bp):
AGTTAACTGGCCACATCAGCT
Found at i:19035890 original size:31 final size:32
Alignment explanation
Indices: 19035855--19035915 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
19035845 TTACAATTTT
* * *
19035855 TATAATAATTAATATTATATTTAA-ATTTAAC
1 TATAAAAAGTAATATAATATTTAATATTTAAC
*
19035886 TATAAAAAGTAATATAATTTTTAATATTTA
1 TATAAAAAGTAATATAATATTTAATATTTA
19035916 TTTAAGTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (32 bp):
TATAAAAAGTAATATAATATTTAATATTTAAC
Found at i:19039943 original size:5 final size:5
Alignment explanation
Indices: 19039929--19039959 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
19039919 AAGAGATGCC
*
19039929 TTTTA CTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
19039960 CCCTTTGAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:19050629 original size:11 final size:11
Alignment explanation
Indices: 19050615--19050656 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
19050605 AGATAAATAT
*
19050615 TATTTTATTAA
1 TATTTTATAAA
19050626 TATTTTAATAAGA
1 TATTTT-ATAA-A
19050639 TATTTT-TAAA
1 TATTTTATAAA
19050649 TATTTTAT
1 TATTTTAT
19050657 TTAATTATGC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
10 7 0.26
11 10 0.37
12 3 0.11
13 7 0.26
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (11 bp):
TATTTTATAAA
Found at i:19052425 original size:2 final size:2
Alignment explanation
Indices: 19052418--19052450 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
19052408 GCTTTTCTCC
19052418 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
19052451 CACATCATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19057186 original size:25 final size:25
Alignment explanation
Indices: 19057158--19057330 Score: 181
Period size: 25 Copynumber: 7.4 Consensus size: 25
19057148 AGAGTTTATT
19057158 GTGCTCTCTGATTATTAGCACATCA
1 GTGCTCTCTGATTATTAGCACATCA
*
19057183 GTGCTCTCTGATTATTAGCACGTCA
1 GTGCTCTCTGATTATTAGCACATCA
*
19057208 GTGCTCTCTGATTATTAGCACGTCA
1 GTGCTCTCTGATTATTAGCACATCA
*
19057233 GTGCTCTCTGATTACTAG--CA-CA
1 GTGCTCTCTGATTATTAGCACATCA
**
19057255 ---CTCTCTGATTATTAGCACATTG
1 GTGCTCTCTGATTATTAGCACATCA
**
19057277 GTGCTCTCTG--T-TTAGCACATTT
1 GTGCTCTCTGATTATTAGCACATCA
* *
19057299 GTGCTCTCTG--TATTA-CACTTTA
1 GTGCTCTCTGATTATTAGCACATCA
19057321 GTGCTCTCTG
1 GTGCTCTCTG
19057331 TTTAATAGTG
Statistics
Matches: 132, Mismatches: 9, Indels: 17
0.84 0.06 0.11
Matches are distributed among these distances:
19 14 0.11
21 2 0.02
22 38 0.29
23 5 0.04
25 73 0.55
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (25 bp):
GTGCTCTCTGATTATTAGCACATCA
Found at i:19057216 original size:50 final size:49
Alignment explanation
Indices: 19057158--19057330 Score: 179
Period size: 44 Copynumber: 3.7 Consensus size: 49
19057148 AGAGTTTATT
19057158 GTGCTCTCTGATTATTAGCACATCAGTGCTCTCTGATTATTAGCACGTCA
1 GTGCTCTCTGATTATTAGCACATCAGTGCTCTCTGATTATTAGCAC-TCA
* *
19057208 GTGCTCTCTGATTATTAGCACGTCAGTGCTCTCTGATTACTAGCA--CA
1 GTGCTCTCTGATTATTAGCACATCAGTGCTCTCTGATTATTAGCACTCA
** **
19057255 ---CTCTCTGATTATTAGCACATTGGTGCTCTCTG--T-TTAGCACATTT
1 GTGCTCTCTGATTATTAGCACATCAGTGCTCTCTGATTATTAGCAC-TCA
* *
19057299 GTGCTCTCTG--TATTA-CACTTTAGTGCTCTCTG
1 GTGCTCTCTGATTATTAGCACATCAGTGCTCTCTG
19057331 TTTAATAGTG
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
41 5 0.05
42 1 0.01
44 44 0.41
45 5 0.05
47 9 0.08
50 43 0.40
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (49 bp):
GTGCTCTCTGATTATTAGCACATCAGTGCTCTCTGATTATTAGCACTCA
Found at i:19057260 original size:19 final size:19
Alignment explanation
Indices: 19057236--19057273 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
19057226 CACGTCAGTG
19057236 CTCTCTGATTACTAGCACA
1 CTCTCTGATTACTAGCACA
*
19057255 CTCTCTGATTATTAGCACA
1 CTCTCTGATTACTAGCACA
19057274 TTGGTGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (19 bp):
CTCTCTGATTACTAGCACA
Found at i:19057293 original size:22 final size:22
Alignment explanation
Indices: 19057266--19057334 Score: 95
Period size: 22 Copynumber: 3.1 Consensus size: 22
19057256 TCTCTGATTA
*
19057266 TTAGCACATTGGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
*
19057288 TTAGCACATTTGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
*
19057310 ATTA-CACTTTAGTGCTCTCTGT
1 -TTAGCACATTAGTGCTCTCTGT
19057332 TTA
1 TTA
19057335 ATAGTGCATA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
21 3 0.07
22 37 0.86
23 3 0.07
ACGTcount: A:0.16, C:0.22, G:0.17, T:0.45
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCTGT
Found at i:19059322 original size:19 final size:22
Alignment explanation
Indices: 19059272--19059314 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
19059262 CTGAGTGCCG
*
19059272 TTCTAGTGTGTTTGGTTGGATTA
1 TTCTGGTGTGTTTGGTTGGA-TA
*
19059295 TTTTGGTGTGTTTGGTTGGA
1 TTCTGGTGTGTTTGGTTGGA
19059315 ATCTGTGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.09, C:0.02, G:0.35, T:0.53
Consensus pattern (22 bp):
TTCTGGTGTGTTTGGTTGGATA
Found at i:19060361 original size:11 final size:11
Alignment explanation
Indices: 19060347--19060400 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
19060337 AGATAAATAT
19060347 TATTTTATTAA
1 TATTTTATTAA
*
19060358 TATTTTACTAA
1 TATTTTATTAA
* *
19060369 TATTTAATGAGA
1 TATTTTATTA-A
*
19060381 TATTTTATTAT
1 TATTTTATTAA
19060392 TA-TTTATTA
1 TATTTTATTA
19060401 TTTATTTAGT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
10 7 0.20
11 19 0.54
12 9 0.26
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:19061767 original size:23 final size:23
Alignment explanation
Indices: 19061681--19061817 Score: 82
Period size: 23 Copynumber: 5.9 Consensus size: 23
19061671 GATATGTTGA
*
19061681 AGGGTATA-TTGGTTGTGTTTGG
1 AGGGTAAATTTGGTTGTGTTTGG
* * * * *
19061703 AGGGTATACTTGGTAGTGTTCGT
1 AGGGTAAATTTGGTTGTGTTTGG
* * *
19061726 AGGTTATATATATAGTTGTGTTTGG
1 AGGGTA-A-ATTTGGTTGTGTTTGG
* *
19061751 AGGGTAAATTTGGTTGTGTCCT-A
1 AGGGTAAATTTGGTTGTGT-TTGG
* *
19061774 AGGGTACATATGGTTGTGTTTGG
1 AGGGTAAATTTGGTTGTGTTTGG
* *
19061797 AGGCTATGA-TTGGTTGTGTTT
1 AGGGTA-AATTTGGTTGTGTTT
19061818 CGTGGGTGAT
Statistics
Matches: 86, Mismatches: 23, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
22 9 0.10
23 59 0.69
24 3 0.03
25 15 0.17
ACGTcount: A:0.18, C:0.04, G:0.34, T:0.43
Consensus pattern (23 bp):
AGGGTAAATTTGGTTGTGTTTGG
Found at i:19064057 original size:30 final size:30
Alignment explanation
Indices: 19064023--19064084 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
19064013 GCTACAATTA
* *
19064023 TGCACAAATAAAAGTGTTAAATGGTAGCTT
1 TGCACAAATAAAAGTGTTAAAGGGGAGCTT
*
19064053 TGCACAAATAAATGTGTTAAAGGGGAGCTT
1 TGCACAAATAAAAGTGTTAAAGGGGAGCTT
19064083 TG
1 TG
19064085 GTAAGCTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (30 bp):
TGCACAAATAAAAGTGTTAAAGGGGAGCTT
Found at i:19064493 original size:46 final size:46
Alignment explanation
Indices: 19064361--19064498 Score: 138
Period size: 46 Copynumber: 3.0 Consensus size: 46
19064351 GTGGATATGT
*
19064361 TGAAGGGTATAT-TGGTTGTGTTTGGAGGCTATACCTT-GTTGTGTT
1 TGAAGGGTATATATGGTTGTGTTTGGAGGCTATA-CTTGGTTGTGTC
* * * * * *
19064406 TGGAGGTTATATATATGGTTGTGTTTGAAGGGTAAATTTGGTTGTGTC
1 TGAAGG--GTATATATGGTTGTGTTTGGAGGCTATACTTGGTTGTGTC
* *
19064454 TGAAGGGTACATATGGTTGTATTTGGAGGCTATGA-TTGGTTGTGT
1 TGAAGGGTATATATGGTTGTGTTTGGAGGCTAT-ACTTGGTTGTGT
19064499 TTGGTGGGTG
Statistics
Matches: 74, Mismatches: 14, Indels: 9
0.76 0.14 0.09
Matches are distributed among these distances:
45 5 0.07
46 31 0.42
47 8 0.11
48 30 0.41
ACGTcount: A:0.19, C:0.04, G:0.34, T:0.43
Consensus pattern (46 bp):
TGAAGGGTATATATGGTTGTGTTTGGAGGCTATACTTGGTTGTGTC
Found at i:19064502 original size:23 final size:22
Alignment explanation
Indices: 19064368--19064502 Score: 110
Period size: 23 Copynumber: 5.8 Consensus size: 22
19064358 TGTTGAAGGG
19064368 TATATTGGTTGTGTTTGGAGGC
1 TATATTGGTTGTGTTTGGAGGC
*
19064390 TATACCTT-GTTGTGTTTGGAGGTTA
1 TATA--TTGGTTGTGTTTGGAGG--C
* *
19064415 TATATATGGTTGTGTTTGAAGGG
1 TATAT-TGGTTGTGTTTGGAGGC
* * * *
19064438 TAAATTTGGTTGTGTCTGAAGGG
1 TATA-TTGGTTGTGTTTGGAGGC
* *
19064461 TACATATGGTTGTATTTGGAGGC
1 TATAT-TGGTTGTGTTTGGAGGC
19064484 TATGATTGGTTGTGTTTGG
1 TAT-ATTGGTTGTGTTTGG
19064503 TGGGTGATAG
Statistics
Matches: 92, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
22 5 0.05
23 64 0.70
24 6 0.07
25 17 0.18
ACGTcount: A:0.18, C:0.04, G:0.33, T:0.44
Consensus pattern (22 bp):
TATATTGGTTGTGTTTGGAGGC
Found at i:19074839 original size:23 final size:23
Alignment explanation
Indices: 19074806--19075296 Score: 253
Period size: 23 Copynumber: 21.0 Consensus size: 23
19074796 TGATGCTTAA
* *
19074806 ATGCTGCCCAATTTGTTGCATAT
1 ATGCTGTCCAATTTGTTGTATAT
*
19074829 ATGCTGTCCAATTTTGATGCT-TA-
1 ATGCTGTCCAA-TTTGTTG-TATAT
* *
19074852 AGTGTTGTCCAATCTGTTGTATAT
1 A-TGCTGTCCAATTTGTTGTATAT
* *
19074876 ATGCTGCCCAATTTGTTGCATAT
1 ATGCTGTCCAATTTGTTGTATAT
* *
19074899 ATGCTGTCCAATTTTGATGCT-TAA
1 ATGCTGTCCAA-TTTGTTG-TATAT
*
19074923 ATGCTG-CCTAATTTGTTTTATAT
1 ATGCTGTCC-AATTTGTTGTATAT
* * *
19074946 ATGCTGTCCAATTTTGGTGTAAAA
1 ATGCTGTCCAA-TTTGTTGTATAT
* * *
19074970 ATGCT-ACTCAAATTGCTGTATAT
1 ATGCTGTC-CAATTTGTTGTATAT
* * * *
19074993 ATGCTGCTCAAAATTGTTTTATTT
1 ATGCTG-TCCAATTTGTTGTATAT
* * *
19075017 ATGCTGTCCAATTTTGGTGTAAAA
1 ATGCTGTCCAA-TTTGTTGTATAT
* *
19075041 ATGTTG-CTCAAATTGTTGTATAT
1 ATGCTGTC-CAATTTGTTGTATAT
* * * *
19075064 ATGCTGCCCAAATTGTTGAATTT
1 ATGCTGTCCAATTTGTTGTATAT
* * * *
19075087 ATGATGTCCAATTTTGGTGTAAAA
1 ATGCTGTCCAA-TTTGTTGTATAT
*
19075111 ATGCTG-CTCAAATTGTTGTATAT
1 ATGCTGTC-CAATTTGTTGTATAT
* * * * *
19075134 ATGCTGCCCAAATTCTTGAATTT
1 ATGCTGTCCAATTTGTTGTATAT
* * * *
19075157 ATTCTGTCCAATTTTGGTGTAAAA
1 ATGCTGTCCAA-TTTGTTGTATAT
* *
19075181 ATACTG-CTCAAATTGTTGTATAT
1 ATGCTGTC-CAATTTGTTGTATAT
* * *
19075204 ATGCTGCCCAAATTGTTGTATTT
1 ATGCTGTCCAATTTGTTGTATAT
* *
19075227 ATGCTGTCCAAATTTTGGTGTGA-AA
1 ATGCTGTCC-AA-TTTGTTGT-ATAT
* * * *
19075252 ATGCTGTCTAATTTGGTATATAA
1 ATGCTGTCCAATTTGTTGTATAT
* *
19075275 ATGCTGTCCAAATTGATGTATA
1 ATGCTGTCCAATTTGTTGTATA
19075297 AGAGCTGTCC
Statistics
Matches: 352, Mismatches: 89, Indels: 54
0.71 0.18 0.11
Matches are distributed among these distances:
22 3 0.01
23 216 0.61
24 117 0.33
25 15 0.04
26 1 0.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.42
Consensus pattern (23 bp):
ATGCTGTCCAATTTGTTGTATAT
Found at i:19074850 original size:47 final size:46
Alignment explanation
Indices: 19074796--19074959 Score: 152
Period size: 47 Copynumber: 3.5 Consensus size: 46
19074786 ACCGAATAGG
* *
19074796 TGATGCTTAAATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTT
1 TGATGCTTAAATGCTGTCCAATTTGTTGCATATATGCTGCCCAA-TT
* * * *
19074843 TGATGCTTAAGTGTTGTCCAATCTGTTGTATATATGCTGCCCAATT
1 TGATGCTTAAATGCTGTCCAATTTGTTGCATATATGCTGCCCAATT
* * * * * * *
19074889 TGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGCTGCCTAATT
1 TGATGCTTAAATGCTGTCCAA-TTTGTTGCATATATGCTGCCCAATT
*
19074936 TG-T-TTTATATATGCTGTCCAATTT
1 TGATGCTTA-A-ATGCTGTCCAATTT
19074960 TGGTGTAAAA
Statistics
Matches: 94, Mismatches: 20, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
45 2 0.02
46 22 0.23
47 70 0.74
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (46 bp):
TGATGCTTAAATGCTGTCCAATTTGTTGCATATATGCTGCCCAATT
Found at i:19074919 original size:70 final size:70
Alignment explanation
Indices: 19074806--19074959 Score: 247
Period size: 70 Copynumber: 2.2 Consensus size: 70
19074796 TGATGCTTAA
* *
19074806 ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAAGTGTTGTCC-AATCTGTT
1 ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGCTG-CCTAATCTGTT
19074870 GTATAT
65 GTATAT
* *
19074876 ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGCTGCCTAATTTGTTT
1 ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGCTGCCTAATCTGTTG
19074941 TATAT
66 TATAT
*
19074946 ATGCTGTCCAATTT
1 ATGCTGCCCAATTT
19074960 TGGTGTAAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
69 2 0.03
70 76 0.97
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.44
Consensus pattern (70 bp):
ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGCTGCCTAATCTGTTG
TATAT
Done.