Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 78 of 168
Found at i:22864540 original size:31 final size:30
Alignment explanation
Indices: 22864476--22864543 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 30
22864466 AACATAGGTA
*
22864476 TTTAATAAATTATTAATATAATTTATTATT
1 TTTAATAAATTATTAATATAAATTATTATT
22864506 TTTAATAAATTATTTAATATTTAAATT-TTA-T
1 TTTAATAAATTA-TTAATA--TAAATTATTATT
22864537 TTTAATA
1 TTTAATA
22864544 GTAAATTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
30 12 0.35
31 14 0.41
32 3 0.09
33 5 0.15
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (30 bp):
TTTAATAAATTATTAATATAAATTATTATT
Found at i:22874393 original size:95 final size:94
Alignment explanation
Indices: 22874249--22874528 Score: 339
Period size: 95 Copynumber: 3.0 Consensus size: 94
22874239 AACATGGGGT
* * * * * *
22874249 TTGTGTAAGACCATAGCTCGATTATGGTAGCATATGAAGTCCATCGGGACAATAAGCATGGGATA
1 TTGTGTAAGACCATAGCTCGATTATGGCAGCATATGGAGTCTATTGGGACAATAAACACGGGATA
22874314 GTCTGCCAGGACATTAAACATGGAGTTATA
66 GTCTGCCAGGACATTAAACATGG-GTTATA
* * * *
22874344 TTGTGTAAGACCATATCTCGATTATGGCAACATATGGAGTCTGTTGGGACAATAAACACGGGGTA
1 TTGTGTAAGACCATAGCTCGATTATGGCAGCATATGGAGTCTATTGGGACAATAAACACGGGATA
* *
22874409 GCCTGCAAGGACATTAAACATGGGTTATA
66 GTCTGCCAGGACATTAAACATGGGTTATA
** * * *
22874438 TTGTGTAAGACCATAGCTCGGCTATGGCAGCATAT-GAATTTTTTCGGGACAATAAACACGGGGA
1 TTGTGTAAGACCATAGCTCGATTATGGCAGCATATGGAGTCTATT-GGGACAATAAACAC-GGGA
* **
22874502 -AGTTTGCCAGGATGTTAAACATGGGTT
64 TAGTCTGCCAGGACATTAAACATGGGTT
22874529 TACGTTGTAA
Statistics
Matches: 158, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
93 6 0.04
94 73 0.46
95 79 0.50
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (94 bp):
TTGTGTAAGACCATAGCTCGATTATGGCAGCATATGGAGTCTATTGGGACAATAAACACGGGATA
GTCTGCCAGGACATTAAACATGGGTTATA
Found at i:22874472 original size:94 final size:94
Alignment explanation
Indices: 22874249--22874528 Score: 346
Period size: 94 Copynumber: 3.0 Consensus size: 94
22874239 AACATGGGGT
* * * * * * *
22874249 TTGTGTAAGACCATAGCTCGATTATGGTAGCATATGAAGTCCATCGGGACAATAAGCATGGGATA
1 TTGTGTAAGACCATAGCTCGATTATGGCAGCATATGGAGTCTATTGGGACAATAAACACGGGGTA
22874314 GTCTGCCAGGACATTAAACATGGAGTTATA
66 GTCTGCCAGGACATTAAACATGG-GTTATA
* * *
22874344 TTGTGTAAGACCATATCTCGATTATGGCAACATATGGAGTCTGTTGGGACAATAAACACGGGGTA
1 TTGTGTAAGACCATAGCTCGATTATGGCAGCATATGGAGTCTATTGGGACAATAAACACGGGGTA
* *
22874409 GCCTGCAAGGACATTAAACATGGGTTATA
66 GTCTGCCAGGACATTAAACATGGGTTATA
** * * * *
22874438 TTGTGTAAGACCATAGCTCGGCTATGGCAGCATAT-GAATTTTTTCGGGACAATAAACACGGGGA
1 TTGTGTAAGACCATAGCTCGATTATGGCAGCATATGGAGTCTATT-GGGACAATAAACACGGGGT
* **
22874502 AGTTTGCCAGGATGTTAAACATGGGTT
65 AGTCTGCCAGGACATTAAACATGGGTT
22874529 TACGTTGTAA
Statistics
Matches: 159, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
93 6 0.04
94 77 0.48
95 76 0.48
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (94 bp):
TTGTGTAAGACCATAGCTCGATTATGGCAGCATATGGAGTCTATTGGGACAATAAACACGGGGTA
GTCTGCCAGGACATTAAACATGGGTTATA
Found at i:22877791 original size:101 final size:101
Alignment explanation
Indices: 22877616--22877815 Score: 330
Period size: 101 Copynumber: 2.0 Consensus size: 101
22877606 CTCTTGATTT
* *
22877616 AATTACTTGGTTATTCTTCTTCTTCTATTCAATATCATTTCAAATCTTCTCCATATACAACCACC
1 AATTACTTGGCTATTCTTCTTCTTCTATTCAATATCATTTCAAATCTTCTCCATAGACAACCACC
* *
22877681 ATGCACCATCGTTTT-TCGTTTTTTACCATCATCAAA
66 ATGCACCATC-TTTTGTCATTTTTTACCACCATCAAA
*
22877717 AATTACTTGGCTATTCTTCTTCTTCTATTCAATATCATTTCGAATCTTCTCCATAGACAACCACC
1 AATTACTTGGCTATTCTTCTTCTTCTATTCAATATCATTTCAAATCTTCTCCATAGACAACCACC
*
22877782 GTGCACCATCTTTTGTCATTTTTTACCACCATCA
66 ATGCACCATCTTTTGTCATTTTTTACCACCATCA
22877816 TAAACCACTG
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 4 0.04
101 88 0.96
ACGTcount: A:0.26, C:0.27, G:0.06, T:0.41
Consensus pattern (101 bp):
AATTACTTGGCTATTCTTCTTCTTCTATTCAATATCATTTCAAATCTTCTCCATAGACAACCACC
ATGCACCATCTTTTGTCATTTTTTACCACCATCAAA
Found at i:22888254 original size:13 final size:13
Alignment explanation
Indices: 22888236--22888264 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
22888226 ATTGTTGTGC
22888236 TTTGGCCACTATT
1 TTTGGCCACTATT
22888249 TTTGGCCACTATT
1 TTTGGCCACTATT
22888262 TTT
1 TTT
22888265 ACAGCCAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.52
Consensus pattern (13 bp):
TTTGGCCACTATT
Found at i:22897175 original size:15 final size:15
Alignment explanation
Indices: 22897155--22897183 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
22897145 ATGCCTTACA
22897155 CATCGTGTTATCAAT
1 CATCGTGTTATCAAT
22897170 CATCGTGTTATCAA
1 CATCGTGTTATCAA
22897184 CCAACAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (15 bp):
CATCGTGTTATCAAT
Found at i:22897901 original size:20 final size:21
Alignment explanation
Indices: 22897878--22897916 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
22897868 TAAAGGCGAG
* *
22897878 TACCCACAA-ATCCTATGGCA
1 TACCAACAATATCCAATGGCA
22897898 TACCAACAATATCCAATGG
1 TACCAACAATATCCAATGG
22897917 ATCCACTAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.38, C:0.31, G:0.10, T:0.21
Consensus pattern (21 bp):
TACCAACAATATCCAATGGCA
Found at i:22901903 original size:20 final size:20
Alignment explanation
Indices: 22901878--22901925 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
22901868 AAAACAGAGA
*
22901878 AGAATAGAGTAGAAC-TAAAC
1 AGAATAGAGCAGAACAT-AAC
22901898 AGAATAGAGCAGAACATAAC
1 AGAATAGAGCAGAACATAAC
22901918 AGAATAGA
1 AGAATAGA
22901926 ACAAAGCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.56, C:0.10, G:0.21, T:0.12
Consensus pattern (20 bp):
AGAATAGAGCAGAACATAAC
Found at i:22901913 original size:15 final size:15
Alignment explanation
Indices: 22901847--22901920 Score: 51
Period size: 15 Copynumber: 4.9 Consensus size: 15
22901837 ACAACCCAAC
*
22901847 CAGAACAGGACAGAG
1 CAGAACAGAACAGAG
*
22901862 CAGAACAAAACAGAG
1 CAGAACAGAACAGAG
* * ** *
22901877 AAGAATAGAGTAGAA
1 CAGAACAGAACAGAG
*
22901892 CTA-AACAGAATAGAG
1 C-AGAACAGAACAGAG
*
22901907 CAGAACATAACAGA
1 CAGAACAGAACAGA
22901921 ATAGAACAAA
Statistics
Matches: 43, Mismatches: 14, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
14 1 0.02
15 41 0.95
16 1 0.02
ACGTcount: A:0.55, C:0.15, G:0.23, T:0.07
Consensus pattern (15 bp):
CAGAACAGAACAGAG
Found at i:22902472 original size:10 final size:10
Alignment explanation
Indices: 22902457--22902491 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
22902447 TAACATGTTA
*
22902457 AATTTTAATT
1 AATTTTGATT
22902467 AATTTTGATT
1 AATTTTGATT
22902477 AATTTTGATT
1 AATTTTGATT
22902487 -ATTTT
1 AATTTT
22902492 CGACAGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 5 0.21
10 19 0.79
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (10 bp):
AATTTTGATT
Found at i:22905269 original size:70 final size:70
Alignment explanation
Indices: 22905115--22905260 Score: 229
Period size: 70 Copynumber: 2.1 Consensus size: 70
22905105 TTAAACTGGT
* *
22905115 TAATAAAGTGTTTTCTGTAAATCTGATTTTATGTAAACTATTTTGGACTGTAAGTTCTGTTATTA
1 TAAT-AAGTGTTTTCTGTAAATCTGATTTTATGTAAACGATTTTGGACTGGAAGTTCTGTTATTA
22905180 ATAATG
65 ATAATG
** *
22905186 TAATAAGTGTTTTCTGTAAATCTGATTTTATGTTGACGATTTTGGATTGGAAGTTCTGTTATTAA
1 TAATAAGTGTTTTCTGTAAATCTGATTTTATGTAAACGATTTTGGACTGGAAGTTCTGTTATTAA
*
22905251 TACTG
66 TAATG
22905256 TAATA
1 TAATA
22905261 CTATTTTTCG
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
70 65 0.94
71 4 0.06
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.47
Consensus pattern (70 bp):
TAATAAGTGTTTTCTGTAAATCTGATTTTATGTAAACGATTTTGGACTGGAAGTTCTGTTATTAA
TAATG
Found at i:22908255 original size:28 final size:28
Alignment explanation
Indices: 22908165--22908262 Score: 76
Period size: 28 Copynumber: 3.5 Consensus size: 28
22908155 ATTATGTTTA
* * *
22908165 AGGTTTAGGGTGTTAAGGTATA-TCATATT
1 AGGTTTAGGGT-TTAATGTTTAGTAAT-TT
*
22908194 AGAGTTTAGGGTTTAATGTTTAGTATTTT
1 AG-GTTTAGGGTTTAATGTTTAGTAATTT
**
22908223 AGGTTTAGTGG-TTAATGTTTCTTAATTT
1 AGGTTTAG-GGTTTAATGTTTAGTAATTT
*
22908251 GGGTTT-GGGTTT
1 AGGTTTAGGGTTT
22908263 TTGAATTTAT
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.04
27 3 0.05
28 25 0.44
29 16 0.28
30 11 0.19
ACGTcount: A:0.21, C:0.02, G:0.28, T:0.49
Consensus pattern (28 bp):
AGGTTTAGGGTTTAATGTTTAGTAATTT
Found at i:22908262 original size:20 final size:21
Alignment explanation
Indices: 22908246--22908300 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
22908236 AATGTTTCTT
22908246 AATTT-GGGTTTGGGTTTTTG
1 AATTTAGGGTTTGGGTTTTTG
* * *
22908266 AATTTATGGTTTGGGTGTATG
1 AATTTAGGGTTTGGGTTTTTG
*
22908287 -GTTTAGGGTTTGGG
1 AATTTAGGGTTTGGG
22908301 GTTTAGTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.13, C:0.00, G:0.38, T:0.49
Consensus pattern (21 bp):
AATTTAGGGTTTGGGTTTTTG
Found at i:22909039 original size:189 final size:187
Alignment explanation
Indices: 22908707--22909265 Score: 694
Period size: 189 Copynumber: 3.0 Consensus size: 187
22908697 ACAAAAGTAT
* * * * * * * *
22908707 GTTTTAATGGCTTCCCAAACGGTGCCATTTTTGCCAATCATTTTAGTGGAGCTTATTAGTAAACG
1 GTTTTAATAGTTTCCTAAACGGTGTCGTTTTTGCCAATGATTTTAGTGGCGCTTATTAGAAAACG
*
22908772 CCGCAAAAGGAT-GAAATTAGTGGCG-TTTGTTTAGCAAGCGCCGCAAATATGTGCCTGATACTA
66 CCG-AAAAGGATAGAAATTAGTGGCGTTTTG-GTAGCAAGCGCCGCAAATATGTGCCTGATACTA
*
22908835 CAAAACGTAACGTTTTGATGCAAGATATTAGTGGGGTTTTTGGAAAAACGCCAGAATTAA
129 CAAAACGT-ACGTTTTGATGCAAGATATTAGTGGCGTTTTTGGAAAAACGCCAGAATTAA
*
22908895 GTTTTAATAGTTTCCTAAACGGTGTCGTTTTTGCCAATGATTTTGGTGGCGCTTATTAGAAAACG
1 GTTTTAATAGTTTCCTAAACGGTGTCGTTTTTGCCAATGATTTTAGTGGCGCTTATTAGAAAACG
* * ** *
22908960 CCGAAAAGGGATAGAAGTTAGTGGCGTTTTGGTAGCAAGCGCCGCTAATATGTGTGTGATACTGC
66 CCGAAAA-GGATAGAAATTAGTGGCGTTTTGGTAGCAAGCGCCGCAAATATGTGCCTGATACTAC
* * * * * * **
22909025 AAAATGATACGTTTTGATGGAATATATTAGTGGCATCTTTGGGAAAATTCCAGAATTAA
130 AAAACG-TACGTTTTGATGCAAGATATTAGTGGCGTTTTTGGAAAAACGCCAGAATTAA
* * **
22909084 GTTTTAATAGTTT-CTCAAACGGTGTCGTTTTTGCGAATGCTTTTAGTGGCGCTTGCTAGAAAAC
1 GTTTTAATAGTTTCCT-AAACGGTGTCGTTTTTGCCAATGATTTTAGTGGCGCTTATTAGAAAAC
* * *
22909148 GCCGAAAAATGATAGAAATTAGTGGCGTTTAGGTA-CAAAGCGCCGAAAATATGTGCCTGATACT
65 GCCG-AAAAGGATAGAAATTAGTGGCGTTTTGGTAGC-AAGCGCCGCAAATATGTGCCTGATACT
* * *
22909212 ACAAAACGTTATGTTTTGATTCAAGATATTAGTGGCGTTTTTAGTAAAAACGCC
128 ACAAAACG-TACGTTTTGATGCAAGATATTAGTGGCGTTTTT-GGAAAAACGCC
22909266 CAATAGCTAT
Statistics
Matches: 314, Mismatches: 49, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
187 4 0.01
188 66 0.21
189 228 0.73
190 16 0.05
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.32
Consensus pattern (187 bp):
GTTTTAATAGTTTCCTAAACGGTGTCGTTTTTGCCAATGATTTTAGTGGCGCTTATTAGAAAACG
CCGAAAAGGATAGAAATTAGTGGCGTTTTGGTAGCAAGCGCCGCAAATATGTGCCTGATACTACA
AAACGTACGTTTTGATGCAAGATATTAGTGGCGTTTTTGGAAAAACGCCAGAATTAA
Found at i:22911448 original size:123 final size:117
Alignment explanation
Indices: 22911201--22911503 Score: 446
Period size: 123 Copynumber: 2.5 Consensus size: 117
22911191 CATAACTTAC
* **
22911201 ATAATATTAACATTTATAATTAAATTGGTCAAACCTATGTAAATATTTATATGTTTCCTTTTCAA
1 ATAATATTAACATTTATAATTAAATTGGTCAAAACTATACAAATATTTATATGTTTCCTTTTCAA
* * * *
22911266 ATGTTTATATTAACATTTATACAAATTATGTAATCCCATTTCAAATGTGTAC
66 ATGTTAATATTAACATTTATACAAATTATGTAATCCCATTTAAAATGCGTAA
*
22911318 ATAATATTAACATTTATAATTAAATTTGTCAAAACTATACAAATATTTATATGATTTCCTTGTT-
1 ATAATATTAACATTTATAATTAAATTGGTCAAAACTATACAAATATTTATATG-TTTCCTT-TTC
22911382 AAATGCGTAAATAATATTAACATTTATACAAATTATGTAATCCCATTTAAAATGCGTAA
64 AAAT--GT---TAATATTAACATTTATACAAATTATGTAATCCCATTTAAAATGCGTAA
*
22911441 ATAATATTAACATTTATAATTAAATTGGTCTAAACTATACAAATATTTATATGTTTTCCTTTT
1 ATAATATTAACATTTATAATTAAATTGGTCAAAACTATACAAATATTTATATG-TTTCCTTTT
22911504 TCTTTATCTT
Statistics
Matches: 168, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
117 49 0.29
118 11 0.07
119 2 0.01
120 2 0.01
122 2 0.01
123 102 0.61
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (117 bp):
ATAATATTAACATTTATAATTAAATTGGTCAAAACTATACAAATATTTATATGTTTCCTTTTCAA
ATGTTAATATTAACATTTATACAAATTATGTAATCCCATTTAAAATGCGTAA
Found at i:22911636 original size:32 final size:31
Alignment explanation
Indices: 22911594--22911703 Score: 87
Period size: 32 Copynumber: 3.4 Consensus size: 31
22911584 AATTAAATAA
*
22911594 ATTTTA-TTTAAAGGTATATTTTAATTATTTT
1 ATTTTATTTTAAAGATATATTTTAA-TATTTT
* * *
22911625 ATTTTATTTTAATCACAAATTTTTTTCAATATTTT
1 ATTTTATTTTAA--AGATA-TATTTT-AATATTTT
* * * *
22911660 AATTTATTTTAAAGTTAAATTTTAAATACTTT
1 ATTTTATTTTAAAGATATATTTT-AATATTTT
22911692 ATTTTATTTTAA
1 ATTTTATTTTAA
22911704 TAACAAAATT
Statistics
Matches: 61, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
31 6 0.10
32 27 0.44
33 2 0.03
34 2 0.03
35 22 0.36
36 2 0.03
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.59
Consensus pattern (31 bp):
ATTTTATTTTAAAGATATATTTTAATATTTT
Found at i:22911779 original size:30 final size:30
Alignment explanation
Indices: 22911726--22912059 Score: 130
Period size: 30 Copynumber: 11.1 Consensus size: 30
22911716 AAGATAATAT
22911726 TTTAAAGTTTAAATTTACATAACTTACATAA
1 TTTAAAGTTTAAATTT-CATAACTTACATAA
22911757 TTTAAAGTTTAAATTTCATAACTTACATAA
1 TTTAAAGTTTAAATTTCATAACTTACATAA
* ** *
22911787 TTTAAAACTTTAAGATCGCATTACCTT--ATAA
1 TTT-AAAGTTTAA-ATTTCA-TAACTTACATAA
* * * * *
22911818 CTTACATAATTTACATAATGCATAACTTACGTAA
1 TTTA-A-AGTTTA-A-ATTTCATAACTTACATAA
* * * * *
22911852 CTTAAAGCTCAAATTTCATAATTTATATAA
1 TTTAAAGTTTAAATTTCATAACTTACATAA
* * * * *
22911882 TTTACA---TAACTTACATAATTTA-A-AG
1 TTTAAAGTTTAAATTTCATAACTTACATAA
22911907 TTT-AA----A--TTTCATAACTTACATAA
1 TTTAAAGTTTAAATTTCATAACTTACATAA
*
22911930 TTTAAAGTTCAAATTTCATAACTTACATAA
1 TTTAAAGTTTAAATTTCATAACTTACATAA
* * *
22911960 TTTACATAACTTACATAATTT-A-AAGTT-CA-AA
1 TTT--A-AAGTT-TA-AATTTCATAACTTACATAA
*
22911991 TTTCATAA-CTTACATCATTTACATAACTTACATAA
1 TTT-A-AAGTTTA-A--ATTT-CATAACTTACATAA
* *
22912026 TTTAAAGTTCAAATTTCATAACTTACATCA
1 TTTAAAGTTTAAATTTCATAACTTACATAA
22912056 TTTA
1 TTTA
22912060 CATAACTTAC
Statistics
Matches: 235, Mismatches: 38, Indels: 61
0.70 0.11 0.18
Matches are distributed among these distances:
21 10 0.04
22 1 0.00
23 5 0.02
24 3 0.01
25 4 0.02
26 1 0.00
27 13 0.06
28 3 0.01
29 1 0.00
30 81 0.34
31 41 0.17
32 21 0.09
33 26 0.11
34 15 0.06
35 10 0.04
ACGTcount: A:0.42, C:0.14, G:0.03, T:0.40
Consensus pattern (30 bp):
TTTAAAGTTTAAATTTCATAACTTACATAA
Found at i:22911883 original size:9 final size:9
Alignment explanation
Indices: 22911863--22912077 Score: 120
Period size: 9 Copynumber: 26.7 Consensus size: 9
22911853 TTAAAGCTCA
22911863 AATTT-CAT
1 AATTTACAT
*
22911871 AATTTATAT
1 AATTTACAT
22911880 AATTTACAT
1 AATTTACAT
*
22911889 AACTTACAT
1 AATTTACAT
22911898 AATTTA-A-
1 AATTTACAT
*
22911905 AGTTT--A-
1 AATTTACAT
22911911 AATTT-CAT
1 AATTTACAT
*
22911919 AACTTACAT
1 AATTTACAT
22911928 AATTT--A-
1 AATTTACAT
*
22911934 AAGTT-CA-
1 AATTTACAT
22911941 AATTT-CAT
1 AATTTACAT
*
22911949 AACTTACAT
1 AATTTACAT
22911958 AATTTACAT
1 AATTTACAT
*
22911967 AACTTACAT
1 AATTTACAT
22911976 AATTT--A-
1 AATTTACAT
*
22911982 AAGTT-CA-
1 AATTTACAT
22911989 AATTT-CAT
1 AATTTACAT
*
22911997 AACTTACAT
1 AATTTACAT
*
22912006 CATTTACAT
1 AATTTACAT
*
22912015 AACTTACAT
1 AATTTACAT
22912024 AATTT--A-
1 AATTTACAT
*
22912030 AAGTT-CA-
1 AATTTACAT
22912037 AATTT-CAT
1 AATTTACAT
*
22912045 AACTTACAT
1 AATTTACAT
*
22912054 CATTTACAT
1 AATTTACAT
*
22912063 AACTTACAT
1 AATTTACAT
22912072 AATTTA
1 AATTTA
22912078 TTCTCAACTT
Statistics
Matches: 164, Mismatches: 30, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
6 17 0.10
7 29 0.18
8 22 0.13
9 96 0.59
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (9 bp):
AATTTACAT
Found at i:22911935 original size:78 final size:78
Alignment explanation
Indices: 22911838--22912011 Score: 285
Period size: 78 Copynumber: 2.2 Consensus size: 78
22911828 TTACATAATG
* * * *
22911838 CATAACTTACGTAACTTAAAGCTCAAATTTCATAATTTATATAATTTACATAACTTACATAATTT
1 CATAACTTACATAATTTAAAGCTCAAATTTCATAACTTACATAATTTACATAACTTACATAATTT
*
22911903 AAAGTTTAAATTT
66 AAAGTTCAAATTT
*
22911916 CATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACATAATTTACATAACTTACATAATTT
1 CATAACTTACATAATTTAAAGCTCAAATTTCATAACTTACATAATTTACATAACTTACATAATTT
22911981 AAAGTTCAAATTT
66 AAAGTTCAAATTT
*
22911994 CATAACTTACATCATTTA
1 CATAACTTACATAATTTA
22912012 CATAACTTAC
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 89 1.00
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (78 bp):
CATAACTTACATAATTTAAAGCTCAAATTTCATAACTTACATAATTTACATAACTTACATAATTT
AAAGTTCAAATTT
Found at i:22911968 original size:48 final size:48
Alignment explanation
Indices: 22911911--22912132 Score: 314
Period size: 48 Copynumber: 4.8 Consensus size: 48
22911901 TTAAAGTTTA
22911911 AATTT-CATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACAT
1 AATTTACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACAT
22911958 AATTTACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACAT
1 AATTTACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACAT
*
22912006 CATTTACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACAT
1 AATTTACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACAT
* * * *
22912054 CATTTACATAACTTACATAATTT--ATTCTCAACTTT-A-GACTTACAT
1 AATTTACATAACTTACATAATTTAAAGT-TCAAATTTCATAACTTACAT
* * *
22912099 GA--TACATAACTTACATAATTTAAGGATCAAATTT
1 AATTTACATAACTTACATAATTTAAAGTTCAAATTT
22912133 GACATGGGCA
Statistics
Matches: 162, Mismatches: 9, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
43 19 0.12
44 7 0.04
45 9 0.06
46 3 0.02
47 12 0.07
48 112 0.69
ACGTcount: A:0.41, C:0.16, G:0.03, T:0.40
Consensus pattern (48 bp):
AATTTACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACAT
Found at i:22913586 original size:13 final size:14
Alignment explanation
Indices: 22913570--22913598 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22913560 TTATAAATAT
22913570 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
22913583 TTATAATGGTTTAA
1 TTATAATGGTTTAA
22913597 TT
1 TT
22913599 GGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:22914330 original size:43 final size:43
Alignment explanation
Indices: 22914286--22914602 Score: 460
Period size: 43 Copynumber: 7.4 Consensus size: 43
22914276 ATACCTATTT
* * *
22914286 TAGCGGCGTTTGTAAAAAAAGCACAGCTAAAGGCCAAGACTTT
1 TAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAGGCCAAGACTTA
22914329 TAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAGGCCAAGACTTA
1 TAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAGGCCAAGACTTA
* * *
22914372 TAGCAGCGTTTATAAAAAAAGTGCCGCTAAAGGCCAAGACTTA
1 TAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAGGCCAAGACTTA
* * *
22914415 TAGCAGCGTTTATAAAAAAAGTGCCGCTAAAGGCCAAGACTTA
1 TAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAGGCCAAGACTTA
* *
22914458 TAGCGGCATTTGTAAAAAAAAGCGCCGCTAAAGG-CAAGACTTC
1 TAGCGGCGTTTGT-AAAAAAAGCGCCGCTAAAGGCCAAGACTTA
* *
22914501 TAGCGGCGTTTGTAAAAAAAAGAGCCGCTAAAGG-CAAGACTTC
1 TAGCGGCGTTTGT-AAAAAAAGCGCCGCTAAAGGCCAAGACTTA
*
22914544 TAGCGGCGTTTGTAAAAAAAAGCGCCGCTAAAGG-CAAGACTTC
1 TAGCGGCGTTTGT-AAAAAAAGCGCCGCTAAAGGCCAAGACTTA
22914587 TAGCGGCGTTTGTAAA
1 TAGCGGCGTTTGTAAA
22914603 GGATGCGCCG
Statistics
Matches: 259, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
42 3 0.01
43 237 0.92
44 19 0.07
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (43 bp):
TAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAGGCCAAGACTTA
Found at i:22921550 original size:10 final size:12
Alignment explanation
Indices: 22921524--22921555 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
22921514 GTTGAATTCA
22921524 AATTAATTTTCT
1 AATTAATTTTCT
22921536 AATTAATTTT-T
1 AATTAATTTTCT
22921547 -ATTAATTTT
1 AATTAATTTT
22921556 AATTTTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 9 0.45
11 1 0.05
12 10 0.50
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (12 bp):
AATTAATTTTCT
Found at i:22928681 original size:16 final size:17
Alignment explanation
Indices: 22928645--22928681 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
22928635 GTTATATTTA
*
22928645 ATTTTTGATATGTTTTT
1 ATTTTTGATATGTTTTC
22928662 ATTTTTGATATG-TTTC
1 ATTTTTGATATGTTTTC
22928678 ATTT
1 ATTT
22928682 AAAACTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.68
Consensus pattern (17 bp):
ATTTTTGATATGTTTTC
Found at i:22935229 original size:11 final size:11
Alignment explanation
Indices: 22935213--22935239 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
22935203 GAGGTAGGTC
22935213 CAACTAATAAG
1 CAACTAATAAG
22935224 CAACTAATAAG
1 CAACTAATAAG
22935235 CAACT
1 CAACT
22935240 TGTTCTTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.22, G:0.07, T:0.19
Consensus pattern (11 bp):
CAACTAATAAG
Found at i:22938344 original size:26 final size:26
Alignment explanation
Indices: 22938308--22938363 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
22938298 CTACAGTAGT
*
22938308 TTCATAATATCATAACATATATCAGC
1 TTCAGAATATCATAACATATATCAGC
* * *
22938334 TTCAGAATATCATAGCATGTATCAGT
1 TTCAGAATATCATAACATATATCAGC
22938360 TTCA
1 TTCA
22938364 AAACACTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (26 bp):
TTCAGAATATCATAACATATATCAGC
Found at i:22939119 original size:34 final size:34
Alignment explanation
Indices: 22939075--22939142 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
22939065 GCACAGTTGA
* *
22939075 ACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTAT-AGTG
*
22939110 ACAGT-TTGGGCCTTAGCCCATCTCAGTATAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTATAGTG
22939143 TCAAAAATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 4 0.13
34 21 0.70
35 5 0.17
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.31
Consensus pattern (34 bp):
ACAGTCTTGGGCCTAAGCCCATCTCAGTATAGTG
Found at i:22941778 original size:24 final size:24
Alignment explanation
Indices: 22941751--22941798 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
22941741 TTATGTTTGG
22941751 ATGTGAAATATAATTCTCAAGCTA
1 ATGTGAAATATAATTCTCAAGCTA
22941775 ATGTGAAATATAATTCTCAAGCTA
1 ATGTGAAATATAATTCTCAAGCTA
22941799 TTTATTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (24 bp):
ATGTGAAATATAATTCTCAAGCTA
Found at i:22943712 original size:16 final size:16
Alignment explanation
Indices: 22943693--22943734 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
22943683 GTTACACCTT
* *
22943693 TATTCCATTACAGCTC
1 TATTCAATTACAGCCC
22943709 TATTCAATTACAGCCC
1 TATTCAATTACAGCCC
*
22943725 TATTCTATTA
1 TATTCAATTA
22943735 GAGTGAACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.40
Consensus pattern (16 bp):
TATTCAATTACAGCCC
Found at i:22943873 original size:41 final size:41
Alignment explanation
Indices: 22943811--22943897 Score: 147
Period size: 41 Copynumber: 2.1 Consensus size: 41
22943801 AGGAGTTACA
*
22943811 TCAAAACATCAAAAACAGATTTCATTAAGTATCCAGAACGT
1 TCAAAACATCAAAAACAGATTTCATTAAGTATCCAGAACAT
* *
22943852 TCAAAACATCAAAAACTGATTTCATTGAGTATCCAGAACAT
1 TCAAAACATCAAAAACAGATTTCATTAAGTATCCAGAACAT
22943893 TCAAA
1 TCAAA
22943898 GTTTAATCGA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.46, C:0.20, G:0.09, T:0.25
Consensus pattern (41 bp):
TCAAAACATCAAAAACAGATTTCATTAAGTATCCAGAACAT
Found at i:22949991 original size:16 final size:16
Alignment explanation
Indices: 22949970--22950009 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
22949960 GGAGAATGTG
22949970 TAAATAAACAT-AAATA
1 TAAATAAACATGAAA-A
*
22949986 TAAATAGACATGAAAA
1 TAAATAAACATGAAAA
22950002 TAAATAAA
1 TAAATAAA
22950010 GACGAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 18 0.86
17 3 0.14
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (16 bp):
TAAATAAACATGAAAA
Found at i:22950854 original size:28 final size:27
Alignment explanation
Indices: 22950799--22950851 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
22950789 AAAAAACATA
* *
22950799 TTTTTATTTTTCAAAATCTAAACTTTC
1 TTTTTATTTTTAAAAATCAAAACTTTC
*
22950826 TTTTTTTTTTTAAAAATCAAAACTTT
1 TTTTTATTTTTAAAAATCAAAACTTT
22950852 TCTCAAGATC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (27 bp):
TTTTTATTTTTAAAAATCAAAACTTTC
Found at i:22953477 original size:2 final size:2
Alignment explanation
Indices: 22953470--22953501 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
22953460 TTTCAAACTC
22953470 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22953502 TGTCTGTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22964910 original size:26 final size:26
Alignment explanation
Indices: 22964879--22964930 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22964869 TGTTACTTGT
22964879 TGTTCTTGGAAAACTTTATTCTTTTC
1 TGTTCTTGGAAAACTTTATTCTTTTC
*
22964905 TGTTCTTGGAAAACTTTGTTCTTTTC
1 TGTTCTTGGAAAACTTTATTCTTTTC
22964931 AAGATACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.17, C:0.15, G:0.13, T:0.54
Consensus pattern (26 bp):
TGTTCTTGGAAAACTTTATTCTTTTC
Found at i:22966243 original size:261 final size:261
Alignment explanation
Indices: 22965771--22966247 Score: 685
Period size: 261 Copynumber: 1.8 Consensus size: 261
22965761 AACAGATCAG
* *
22965771 TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGAAGAGCAAATCGCATCCAGTCTTATCTCCCT
1 TAAAACCACAAATCTTATCTCTCTGAAGTTGCAGAAGAGCAAATCGCACCCAGTCTTATCTCCCT
* *
22965836 GAAGTTGCAGTGGAGTAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATT
66 AAAGTTACAGTGGAGTAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATT
* * *
22965901 AAAACCACAAATCTTATCTCCTTGAAGTTACAGTGGAGCGGGTTAAAACCACAAGTCTTATCTCC
131 AAAACCACAAATCTTATCTCCTTGAAGTTACAGTGGAGCGAGTAAAAACCACAAGTCTTATCCCC
* * *
22965966 CTGATGTTGTAGTGGAGCAGACAGAACAAGCTAATATTATTTCCCGGAAGTTACAGTGGAGCGGA
196 CGGAAGTTGCAGTGGAGCAGACAGAACAAGCTAATATTATTTCCCGGAAGTTACAGTGGAGCGGA
22966031 T
261 T
* * *
22966032 TAAAACCACAAATCTTATCTCTCTGAAGTTGTAGGAGAGCAGATCGCACCCAGTCTTATCTCCCT
1 TAAAACCACAAATCTTATCTCTCTGAAGTTGCAGAAGAGCAAATCGCACCCAGTCTTATCTCCCT
** *
22966097 AAAGTTACAGTGGA-TGAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGAT
66 AAAGTTACAGTGGAGT-AGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTACAGTGGAGCAGAT
* * * * *
22966161 TAAAACCACAAGTCTTATCTCCTT-AACGTTGCAGTGGAGCAGACAG-AAAAAGC-TAA-TTTTA
130 TAAAACCACAAATCTTATCTCCTTGAA-GTTACAGTGGAGC-G--AGTAAAAACCACAAGTCTTA
22966222 TCCCCCGGAAGTTGCAGTGGAGCAGA
191 TCCCCCGGAAGTTGCAGTGGAGCAGA
22966248 TTAAAACCAT
Statistics
Matches: 190, Mismatches: 21, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
260 3 0.02
261 178 0.94
262 3 0.02
263 5 0.03
264 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (261 bp):
TAAAACCACAAATCTTATCTCTCTGAAGTTGCAGAAGAGCAAATCGCACCCAGTCTTATCTCCCT
AAAGTTACAGTGGAGTAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATT
AAAACCACAAATCTTATCTCCTTGAAGTTACAGTGGAGCGAGTAAAAACCACAAGTCTTATCCCC
CGGAAGTTGCAGTGGAGCAGACAGAACAAGCTAATATTATTTCCCGGAAGTTACAGTGGAGCGGA
T
Found at i:22966252 original size:217 final size:217
Alignment explanation
Indices: 22965871--22966785 Score: 1341
Period size: 217 Copynumber: 4.2 Consensus size: 217
22965861 AAGCTAATCC
* * * ** * * * *
22965871 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCA-CAAATCTTATCTCCTTGAAGTTACAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAGAAGAAGCTAATCCTATCTCCCTGAAGTTGCAGT
* * * * *
22965935 GGAGCGGGTTAAAACCACAAGTCTTATCTCCCTGATGTTGTAGTGGAGCAGACAGAACAAGCTAA
65 GGAGCGGATTAAAACCACAAGTCTTATCTCCCTAACGTTGCAGTGGAGCAGACAGAAAAAGCTAA
* * * *
22966000 TATTATTTCCCGGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTTGTA
130 TCTTATCTCCCGGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGTA
* *
22966065 GGAGAGCAGATCGCACCCAGTCT
195 GAAGAGCAGATCGCATCCAGTCT
* * *
22966088 TATCTCCCTAAAGTTACAGTGGATG-AGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTGTAGT
1 TATCTCCCTGAAGTTGCAGTGGA-GCAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTGCAGT
*
22966152 GGAGCGGATTAAAACCACAAGTCTTATCTCCTTAACGTTGCAGTGGAGCAGACAGAAAAAGCTAA
65 GGAGCGGATTAAAACCACAAGTCTTATCTCCCTAACGTTGCAGTGGAGCAGACAGAAAAAGCTAA
* * * * * **
22966217 TTTTATCCCCCGGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCTTATCTATCTGAAGTTACA
130 TCTTATCTCCCGGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGTA
*
22966282 GAAGAGCAGATCGCATCTAGTCT
195 GAAGAGCAGATCGCATCCAGTCT
* *
22966305 TATCTCCCTGAAGTTGCAGTGGAACAGACAGAAGAAGCTAATCCTATCTCCCTGAATTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTGCAGTG
*
22966370 GAGCGGATTAGAACCACAAGTCTTATCTCCCTAACGTTGCAGTGGAGCAGACAGAAAAAGCTAAT
66 GAGCGGATTAAAACCACAAGTCTTATCTCCCTAACGTTGCAGTGGAGCAGACAGAAAAAGCTAAT
* *
22966435 CTTATCTCCCGAAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAATTGTAG
131 CTTATCTCCCGGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGTAG
22966500 AAGAGCAGATCGCATCCAGTCT
196 AAGAGCAGATCGCATCCAGTCT
22966522 TATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTGCAGTG
* *
22966587 GAGCGGATTAAAACCACAAGTCTTATCTCCCTGACTTTGCAGTGGAGCAGACA-AAAGAAGCTAA
66 GAGCGGATTAAAACCACAAGTCTTATCTCCCTAACGTTGCAGTGGAGCAGACAGAAA-AAGCTAA
* *
22966651 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATTTCTCTGAAGTTGTA
130 TCTTATCTCCCGGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGTA
* * * *
22966716 GTAGGGCAGGTTGCATCCAGTCT
195 GAAGAGCAGATCGCATCCAGTCT
* * * *
22966739 TATCTCCATGAAGTTGCAGTGGAGCGGACAGAAGAAACCAATCCTAT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAGCTAATCCTAT
22966786 GAAGTTGCAG
Statistics
Matches: 631, Mismatches: 63, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
216 7 0.01
217 623 0.99
218 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (217 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTTGCAGTG
GAGCGGATTAAAACCACAAGTCTTATCTCCCTAACGTTGCAGTGGAGCAGACAGAAAAAGCTAAT
CTTATCTCCCGGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGTAG
AAGAGCAGATCGCATCCAGTCT
Found at i:22966547 original size:129 final size:129
Alignment explanation
Indices: 22966388--22966620 Score: 391
Period size: 129 Copynumber: 1.8 Consensus size: 129
22966378 TAGAACCACA
*
22966388 AGTCTTATCTCCCTAACGTTGCAGTGGAGCAGACAGAAAAAGCTAATCTTATCTCCC-GAAAGTT
1 AGTCTTATCTCCCTAACGTTGCAGTGGAGCAGACAGAAAAAGCTAATCCTATCTCCCTG-AAGTT
*
22966452 GCAGTGGAGCGGATTAAAACCAC-AGATCTTATCTCTCTGAAATTGTAGAAGAGCAGATCGCATC
65 GCAGTGGAGCGGATTAAAACCACAAG-TCTTATCTCCCTGAAATTGTAGAAGAGCAGATCGCATC
22966516 C
129 C
*
22966517 AGTCTTATCTCCCTGAA-GTTGCAGTGGAGCAGACAGAAGAAGCTAATCCTATCTCCCTGAAGTT
1 AGTCTTATCTCCCT-AACGTTGCAGTGGAGCAGACAGAAAAAGCTAATCCTATCTCCCTGAAGTT
22966581 GCAGTGGAGCGGATTAAAACCACAAGTCTTATCTCCCTGA
65 GCAGTGGAGCGGATTAAAACCACAAGTCTTATCTCCCTGA
22966621 CTTTGCAGTG
Statistics
Matches: 98, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
129 93 0.95
130 5 0.05
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.25
Consensus pattern (129 bp):
AGTCTTATCTCCCTAACGTTGCAGTGGAGCAGACAGAAAAAGCTAATCCTATCTCCCTGAAGTTG
CAGTGGAGCGGATTAAAACCACAAGTCTTATCTCCCTGAAATTGTAGAAGAGCAGATCGCATCC
Found at i:22966698 original size:44 final size:43
Alignment explanation
Indices: 22965771--22966763 Score: 544
Period size: 44 Copynumber: 22.9 Consensus size: 43
22965761 AACAGATCAG
* ** *
22965771 TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGAAGAGCA-AA
1 TAAAACCACA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
*** * * * *
22965814 TCGCATC-CAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACA
1 TAAAACCACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T
* * * * *
22965857 GAAGAAGC-TAATCCTATCTCCCTGAAGTTACAGTGGAGCAGAT
1 TAA-AACCACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * *
22965900 TAAAACCACAAATCTTATCTCCTTGAAGTTACAGTGGAGCGGGT
1 TAAAACCAC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* *
22965944 TAAAACCACAAGTCTTATCTCCCTGATGTTGTAGTGGAGCAGA-
1 TAAAACCACAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * * * *
22965987 CAGAACAAGCTAATATTATTTCCCGGAAGTTACAGTGGAGCGGAT
1 TAAAACCA-C-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* *
22966032 TAAAACCACAAATCTTATCTCTCTGAAGTTGTAG-GAGAGCAGA-
1 TAAAACCAC-AATCTTATCTCCCTGAAGTTGCAGTG-GAGCAGAT
*** * * * *
22966075 TCGCACC-CAGTCTTATCTCCCTAAAGTTACAGTGGATG-AGACA
1 TAAAACCACAATCTTATCTCCCTGAAGTTGCAGTGGA-GCAGA-T
* * * * * *
22966118 GAAGAAGC-TAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGAT
1 TAA-AACCACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
*
22966161 TAAAACCACAAGTCTTATCT-CCTTAACGTTGCAGTGGAGCAGA-
1 TAAAACCACAA-TCTTATCTCCCTGAA-GTTGCAGTGGAGCAGAT
* * * * *
22966204 CAGAAA-AAGCTAATTTTATCCCCCGGAAGTTGCAGTGGAGCAGAT
1 TA-AAACCA-C-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* ** * **
22966249 TAAAACCATAGATCTTATCTATCTGAAGTTACAGAAGAGCAGA-
1 TAAAACCACA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
*** * * * * *
22966292 TCGCATC-TAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACA
1 TAAAACCACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T
* * * * * *
22966335 GAAGAAGC-TAATCCTATCTCCCTGAATTTGCAGTGGAGCGGAT
1 TAA-AACCACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
*
22966378 TAGAACCACAAGTCTTATCTCCCT-AACGTTGCAGTGGAGCAGA-
1 TAAAACCACAA-TCTTATCTCCCTGAA-GTTGCAGTGGAGCAGAT
* * *
22966421 CAGAAA-AAGCTAATCTTATCTCCC-GAAAGTTGCAGTGGAGCGGAT
1 TA-AAACCA-C-AATCTTATCTCCCTG-AAGTTGCAGTGGAGCAGAT
* * * **
22966466 TAAAACCACAGATCTTATCTCTCTGAAATTGTAGAAGAGCAGA-
1 TAAAACCACA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
*** * * *
22966509 TCGCATC-CAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
1 TAAAACCACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T
* * * * *
22966552 GAAGAAGC-TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGAT
1 TAA-AACCACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
**
22966595 TAAAACCACAAGTCTTATCTCCCTGACTTTGCAGTGGAGCAGA-
1 TAAAACCACAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* ** *
22966638 CAAAAGAAGCTAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGAT
1 TAAAACCA-C-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * *
22966683 TAAAACCACAGATCTTATTTCTCTGAAGTTGTAGTAGG-GCAGGT
1 TAAAACCACA-ATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGAT
** * * *
22966727 T-GCATC-CAGTCTTATCTCCATGAAGTTGCAGTGGAGC
1 TAAAACCACAATCTTATCTCCCTGAAGTTGCAGTGGAGC
22966764 GGACAGAAGA
Statistics
Matches: 709, Mismatches: 189, Indels: 106
0.71 0.19 0.11
Matches are distributed among these distances:
40 2 0.00
41 121 0.17
42 24 0.03
43 57 0.08
44 474 0.67
45 31 0.04
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (43 bp):
TAAAACCACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
Found at i:22971700 original size:16 final size:16
Alignment explanation
Indices: 22971679--22971741 Score: 99
Period size: 16 Copynumber: 3.9 Consensus size: 16
22971669 TTTGGTTCGC
*
22971679 TGTAATGAAATAGAGG
1 TGTAATGGAATAGAGG
22971695 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
* *
22971711 GGTAATGGAATAGAGA
1 TGTAATGGAATAGAGG
22971727 TGTAATGGAATAGAG
1 TGTAATGGAATAGAG
22971742 ACATAATAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.41, C:0.00, G:0.35, T:0.24
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:22971748 original size:16 final size:16
Alignment explanation
Indices: 22971680--22971748 Score: 75
Period size: 16 Copynumber: 4.3 Consensus size: 16
22971670 TTGGTTCGCT
* **
22971680 GTAATGAAATAGAGGT
1 GTAATGGAATAGAGAC
**
22971696 GTAATGGAATAGAGGG
1 GTAATGGAATAGAGAC
*
22971712 GTAATGGAATAGAGAT
1 GTAATGGAATAGAGAC
22971728 GTAATGGAATAGAGAC
1 GTAATGGAATAGAGAC
*
22971744 ATAAT
1 GTAAT
22971749 AGTAATTCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.43, C:0.01, G:0.32, T:0.23
Consensus pattern (16 bp):
GTAATGGAATAGAGAC
Found at i:22971781 original size:45 final size:44
Alignment explanation
Indices: 22971726--22971822 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 44
22971716 TGGAATAGAG
22971726 ATGTAATGGAATAGAGACATAATAGTAATTCAAT-TGTTTGGTTGA
1 ATGTAATGGAATAGAGACATAATAGT-ATTC-ATGTGTTTGGTTGA
* * * *
22971771 ATGTAATGGAATAGAGGCGTGATAGTATTCTTGTGTTTGGTTGA
1 ATGTAATGGAATAGAGACATAATAGTATTCATGTGTTTGGTTGA
*
22971815 ATGGAATG
1 ATGTAATG
22971823 ATGTTGTAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.48
45 23 0.50
ACGTcount: A:0.32, C:0.04, G:0.28, T:0.36
Consensus pattern (44 bp):
ATGTAATGGAATAGAGACATAATAGTATTCATGTGTTTGGTTGA
Found at i:22972046 original size:38 final size:36
Alignment explanation
Indices: 22971999--22972164 Score: 143
Period size: 37 Copynumber: 4.7 Consensus size: 36
22971989 TTAATAAAAA
*
22971999 TATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAA-TCATAATATTAAATATTCT
22972036 TATATGAATTTAATAAAATCATAATA-TATAATA--C-
1 TATAT-AATTTAATAAAATCATAATATTA-AATATTCT
* * ** * *
22972070 TATAAAATATAATTTAA-CAT-A-ATT-ATTATT-A
1 TATATAATTTAATAAAATCATAATATTAAATATTCT
* *
22972101 AATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAA-TCATAATATTAAATATTCT
22972138 TATATGAATTTAATAAAATCATAATAT
1 TATAT-AATTTAATAAAATCATAATAT
22972165 ATAATACTAT
Statistics
Matches: 100, Mismatches: 16, Indels: 26
0.70 0.11 0.18
Matches are distributed among these distances:
29 3 0.03
30 1 0.01
31 14 0.14
32 3 0.03
33 11 0.11
34 5 0.05
35 4 0.04
36 7 0.07
37 28 0.28
38 24 0.24
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.44
Consensus pattern (36 bp):
TATATAATTTAATAAAATCATAATATTAAATATTCT
Found at i:22974683 original size:20 final size:19
Alignment explanation
Indices: 22974638--22974691 Score: 67
Period size: 20 Copynumber: 2.9 Consensus size: 19
22974628 ATAAAATCAA
22974638 TAAAATTT-ATAAAAA-AT
1 TAAAATTTAATAAAAATAT
*
22974655 TAAAGTTTAATAAAAATATT
1 TAAAATTTAATAAAAATA-T
*
22974675 TAAAATTTATTAAAAAT
1 TAAAATTTAATAAAAAT
22974692 TAGAAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 7 0.23
18 7 0.23
19 1 0.03
20 16 0.52
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
TAAAATTTAATAAAAATAT
Found at i:22974729 original size:19 final size:18
Alignment explanation
Indices: 22974698--22974822 Score: 94
Period size: 19 Copynumber: 6.8 Consensus size: 18
22974688 AAATTAGAAA
*
22974698 AAAAAATTA-AAAATCGT
1 AAAAAATTATAAAATCAT
**
22974715 AAAAAATATATAAAATTTT
1 AAAAAAT-TATAAAATCAT
*
22974734 ATAAAAATCATAAAAT-AT
1 A-AAAAATTATAAAATCAT
** *
22974752 AAAATTTTATAAAGTCAT
1 AAAAAATTATAAAATCAT
22974770 AAGAAAATTATAAAAAAT-AT
1 AA-AAAATTAT--AAAATCAT
* *
22974790 AAAAAAATATAAAAGTCGT
1 AAAAAATTATAAAA-TCAT
22974809 AAAAAATTATAAAA
1 AAAAAATTATAAAA
22974823 ATTATCGTAC
Statistics
Matches: 85, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
17 21 0.25
18 9 0.11
19 41 0.48
20 10 0.12
21 4 0.05
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.28
Consensus pattern (18 bp):
AAAAAATTATAAAATCAT
Found at i:22974801 original size:38 final size:38
Alignment explanation
Indices: 22974745--22974823 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
22974735 TAAAAATCAT
***
22974745 AAAATATAAAATTTTAT-AAAGTCATAAGAAAATTATAA
1 AAAATATAAAAAAATATAAAAGTCATAA-AAAATTATAA
*
22974783 AAAATATAAAAAAATATAAAAGTCGTAAAAAATTATAA
1 AAAATATAAAAAAATATAAAAGTCATAAAAAATTATAA
22974821 AAA
1 AAA
22974824 TTATCGTACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
38 27 0.75
39 9 0.25
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.27
Consensus pattern (38 bp):
AAAATATAAAAAAATATAAAAGTCATAAAAAATTATAA
Found at i:22974822 original size:8 final size:9
Alignment explanation
Indices: 22974716--22974827 Score: 52
Period size: 10 Copynumber: 12.0 Consensus size: 9
22974706 AAAAATCGTA
22974716 AAAAATATAT
1 AAAAAT-TAT
*
22974726 AAAATTTTAT
1 AAAA-ATTAT
*
22974736 AAAAATCAT
1 AAAAATTAT
22974745 -AAAA-TAT
1 AAAAATTAT
*
22974752 -AAAATTTT
1 AAAAATTAT
* *
22974760 ATAAAGTCAT
1 A-AAAATTAT
22974770 AAGAAAATTAT
1 -A-AAAATTAT
*
22974781 AAAAAATAT
1 AAAAATTAT
*
22974790 AAAAAAATAT
1 -AAAAATTAT
*
22974800 AAAAGTCGTA-
1 AAAAAT--TAT
22974810 AAAAATTAT
1 AAAAATTAT
22974819 AAAAATTAT
1 AAAAATTAT
22974828 CGTACAAAAA
Statistics
Matches: 78, Mismatches: 15, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
7 6 0.08
8 8 0.10
9 23 0.29
10 31 0.40
11 10 0.13
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:22975115 original size:27 final size:26
Alignment explanation
Indices: 22975079--22975131 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
22975069 TTTTTCTAAT
22975079 TTTTAATAAAATTAAA-ATATTTTTATA
1 TTTTAAT-AAATTAAATA-ATTTTTATA
* *
22975106 TTTTACTAAATTCAATAATTTTTATA
1 TTTTAATAAATTAAATAATTTTTATA
22975132 AATTTTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (26 bp):
TTTTAATAAATTAAATAATTTTTATA
Found at i:22976574 original size:33 final size:33
Alignment explanation
Indices: 22976527--22976687 Score: 118
Period size: 33 Copynumber: 4.8 Consensus size: 33
22976517 GTTAACCGTT
*
22976527 ATCGGTGGATTCAGCACTTAGCAACCACCAATGA
1 ATCGG-GGAATCAGCACTTAGCAACCACCAATGA
**
22976561 ATCGGGGAATCAGCACACAGCAACC-CC--T--
1 ATCGGGGAATCAGCACTTAGCAACCACCAATGA
* * *
22976589 -TGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTCA
1 ATCGGGGAATCAGCACTTAGCAA-CCAC--CA-A--TGA
22976627 GATGCGGTGGAATCAGCACTTAGCAACCACCAATGA
1 -AT-CGG-GGAATCAGCACTTAGCAACCACCAATGA
* *
22976663 ATAGGGGAATCAACACTTAGCAACC
1 ATCGGGGAATCAGCACTTAGCAACC
22976688 CCTCGGGGGA
Statistics
Matches: 101, Mismatches: 11, Indels: 31
0.71 0.08 0.22
Matches are distributed among these distances:
27 19 0.19
28 2 0.02
29 1 0.01
30 1 0.01
31 1 0.01
32 2 0.02
33 36 0.36
34 7 0.07
35 2 0.02
36 3 0.03
38 1 0.01
39 2 0.02
40 1 0.01
41 5 0.05
42 18 0.18
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (33 bp):
ATCGGGGAATCAGCACTTAGCAACCACCAATGA
Found at i:22976705 original size:102 final size:103
Alignment explanation
Indices: 22976529--22976793 Score: 417
Period size: 102 Copynumber: 2.6 Consensus size: 103
22976519 TAACCGTTAT
* * *
22976529 CGGTGGATTCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
* * *
22976594 GAATCAGCACTTAGCAACCCCC-TTCACATTTCAGATG
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
* **
22976631 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAACACTTAGCAACCCCTCGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
22976696 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
*
22976734 CGGTGGGATCAGCACTTAGCAACCACCAAT-AATTAGGGGAATCAGCACACAGCAACCCCT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAA-TAGGGGAATCAGCACACAGCAACCCCT
22976794 TTATATGCAA
Statistics
Matches: 148, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
102 83 0.56
103 65 0.44
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.18
Consensus pattern (103 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
Found at i:22983365 original size:33 final size:33
Alignment explanation
Indices: 22983318--22983478 Score: 118
Period size: 33 Copynumber: 4.8 Consensus size: 33
22983308 GTTAACCGTT
*
22983318 ATCGGTGGATTCAGCACTTAGCAACCACCAATGA
1 ATCGG-GGAATCAGCACTTAGCAACCACCAATGA
***
22983352 ATCGGGGAATCAGCAAACAGCAACC-CC--T--
1 ATCGGGGAATCAGCACTTAGCAACCACCAATGA
* * *
22983380 -TGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTCA
1 ATCGGGGAATCAGCACTTAGCAA-CCAC--CA-A--TGA
22983418 GATGCGGTGGAATCAGCACTTAGCAACCACCAATGA
1 -AT-CGG-GGAATCAGCACTTAGCAACCACCAATGA
*
22983454 ATAGGGGAATCAGCACTTAGCAACC
1 ATCGGGGAATCAGCACTTAGCAACC
22983479 CCTCGGGGGA
Statistics
Matches: 100, Mismatches: 12, Indels: 31
0.70 0.08 0.22
Matches are distributed among these distances:
27 18 0.18
28 2 0.02
29 1 0.01
30 1 0.01
31 1 0.01
32 2 0.02
33 36 0.36
34 7 0.07
35 2 0.02
36 3 0.03
38 1 0.01
39 2 0.02
40 1 0.01
41 5 0.05
42 18 0.18
ACGTcount: A:0.32, C:0.28, G:0.22, T:0.18
Consensus pattern (33 bp):
ATCGGGGAATCAGCACTTAGCAACCACCAATGA
Found at i:22983496 original size:102 final size:103
Alignment explanation
Indices: 22983320--22983584 Score: 408
Period size: 102 Copynumber: 2.6 Consensus size: 103
22983310 TAACCGTTAT
* * * *
22983320 CGGTGGATTCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCAAACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
* * *
22983385 GAATCAGCACTTAGCAACCCCC-TTCACATTTCAGATG
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
**
22983422 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
22983487 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
* *
22983525 CGGTGGGATCAGCACTTAGCAACCACTAAT-AATTAGGGGAATCAGCACACAGCAACCCCT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAA-TAGGGGAATCAGCACACAGCAACCCCT
22983585 TTATATGCAA
Statistics
Matches: 148, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
102 83 0.56
103 65 0.44
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (103 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
Found at i:22991581 original size:19 final size:19
Alignment explanation
Indices: 22991557--22991593 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
22991547 AAAGCATAAA
22991557 TATTATTGTCGAGAAAAGT
1 TATTATTGTCGAGAAAAGT
22991576 TATTATTGTCGAGAAAAG
1 TATTATTGTCGAGAAAAG
22991594 AATCAGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35
Consensus pattern (19 bp):
TATTATTGTCGAGAAAAGT
Found at i:22998569 original size:15 final size:16
Alignment explanation
Indices: 22998537--22998570 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
22998527 CCCACACTCA
22998537 ATTAAACATATATCAC
1 ATTAAACATATATCAC
22998553 ATTAAACATAT-TCAC
1 ATTAAACATATATCAC
22998568 ATT
1 ATT
22998571 TTATGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTAAACATATATCAC
Found at i:23000538 original size:130 final size:131
Alignment explanation
Indices: 23000305--23000801 Score: 497
Period size: 130 Copynumber: 3.9 Consensus size: 131
23000295 GTGACAGTTA
* * * *
23000305 ATTTATGAG-CACAACTGATATTGTTAAGGCTCGCTGATTTACGATCACAGCCTAAGTTTATTGA
1 ATTTACGAGTCACAACTGATATTATTAAGGCTCGCTGATTTACGATCACAACCTAAGTTCATTGA
** * * * *
23000369 TTTATGATCATAAAAAATCTTCTCTGAGTTAGGTGATTTACTATCACTACTCCAAATAGCTCCCT
66 TTTACAATCATGAACAATCTTCTCTGAGTTAGTTGATTTACTATCACTACTCCAAATAGCTCACT
23000434 G
131 G
* * ** *
23000435 ATTTATG-GTCACAGCTGATATTATTAAGGCTCATTGATTTACGATCA-AAGCCTAAGTTTATTG
1 ATTTACGAGTCACAACTGATATTATTAAGGCTCGCTGATTTACGATCACAA-CCTAAGTTCATTG
* * * * *
23000498 ATTTACAATCATGAATAATCTTCTCTGAGTTAGTTGATTTACTA-CTACTCCTCTAAACAACTCA
65 ATTTACAATCATGAACAATCTTCTCTGAGTTAGTTGATTTACTATC-ACTACTCCAAATAGCTCA
23000562 CTG
129 CTG
* *
23000565 ATTTACGAGTCACAACTG---------A--CTCCCTGATGTACGATCACAACCTACA-TTCATTG
1 ATTTACGAGTCACAACTGATATTATTAAGGCTCGCTGATTTACGATCACAACCTA-AGTTCATTG
* * * *
23000618 ATTTACAATCATGAACAATATTCTCTGAGTTAGTTTATTTATTATCACTACTCCAAATAGCTCGC
65 ATTTACAATCATGAACAATCTTCTCTGAGTTAGTTGATTTACTATCACTACTCCAAATAGCTCAC
*
23000683 TA
130 TG
** * * * *
23000685 ATTTAC-AACCACATCTGATATTATTAAGGCTCGTTGATTTACAATCACAACCTAAGTTCATTGG
1 ATTTACGAGTCACAACTGATATTATTAAGGCTCGCTGATTTACGATCACAACCTAAGTTCATTGA
* * * * * *
23000749 TTCACAATCATGAACAATCTCCTTTAAGTTACTTGATTTATTATCACTACTCC
66 TTTACAATCATGAACAATCTTCTCTGAGTTAGTTGATTTACTATCACTACTCC
23000802 TAACACTGAT
Statistics
Matches: 302, Mismatches: 46, Indels: 38
0.78 0.12 0.10
Matches are distributed among these distances:
119 8 0.03
120 86 0.28
121 4 0.01
122 1 0.00
128 1 0.00
129 4 0.01
130 189 0.63
131 9 0.03
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (131 bp):
ATTTACGAGTCACAACTGATATTATTAAGGCTCGCTGATTTACGATCACAACCTAAGTTCATTGA
TTTACAATCATGAACAATCTTCTCTGAGTTAGTTGATTTACTATCACTACTCCAAATAGCTCACT
G
Found at i:23000597 original size:26 final size:25
Alignment explanation
Indices: 23000557--23000605 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
23000547 CCTCTAAACA
*
23000557 ACTCACTGATTTACGAGTCACAACTG
1 ACTCACTGATGTACGA-TCACAACTG
*
23000583 ACTCCCTGATGTACGATCACAAC
1 ACTCACTGATGTACGATCACAAC
23000606 CTACATTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (25 bp):
ACTCACTGATGTACGATCACAACTG
Found at i:23000689 original size:120 final size:120
Alignment explanation
Indices: 23000469--23000690 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 120
23000459 TAAGGCTCAT
* * * *
23000469 TGATTTACGATCAAAGCCTAAGTTTATTGATTTACAATCATGAATAATCTTCTCTGAGTTAGTTG
1 TGATGTACGATCAAAGCCTAAGTTCATTGATTTACAATCATGAACAATATTCTCTGAGTTAGTTG
* * *
23000534 ATTTACTACTACTCCTCTAAACAACTCACTGATTTACGAGTCACAACTGACTCCC
66 ATTTACTACTACTACTCCAAACAACTCACTAATTTACGAGTCACAACTGACTCCC
23000589 TGATGTACGATCACAA-CCTACA-TTCATTGATTTACAATCATGAACAATATTCTCTGAGTTAGT
1 TGATGTACGATCA-AAGCCTA-AGTTCATTGATTTACAATCATGAACAATATTCTCTGAGTTAGT
* * * * *
23000652 TTATTTATTA-TCACTACTCCAAATAGCTCGCTAATTTAC
64 TGATTTACTACT-ACTACTCCAAACAACTCACTAATTTAC
23000691 AACCACATCT
Statistics
Matches: 87, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
119 1 0.01
120 83 0.95
121 3 0.03
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.36
Consensus pattern (120 bp):
TGATGTACGATCAAAGCCTAAGTTCATTGATTTACAATCATGAACAATATTCTCTGAGTTAGTTG
ATTTACTACTACTACTCCAAACAACTCACTAATTTACGAGTCACAACTGACTCCC
Found at i:23000787 original size:250 final size:250
Alignment explanation
Indices: 23000338--23000788 Score: 618
Period size: 250 Copynumber: 1.8 Consensus size: 250
23000328 TTAAGGCTCG
* * * ** *
23000338 CTGATTTACGATCACAGCCTAAGTTTATTGATTTATGATCATAAAAAATCTTCTCTGAGTTAGGT
1 CTGATGTACGATCACAACCTAAGTTCATTGATTTACAATCATAAAAAATATTCTCTGAGTTAGGT
* ****
23000403 GATTTACTATCACTACTCCAAATAGCTCCCTGATTTATGGTCACAGCTGATATTATTAAGGCTCA
66 GATTTACTATCACTACTCCAAATAGCTCCCTAATTTACAACCACAGCTGATATTATTAAGGCTCA
* * * * * * *
23000468 TTGATTTACGATCAAAGCCTAAGTTTATTGATTTACAATCATGAATAATCTTCTCTGAGTTAGTT
131 TTGATTTACAATCAAAGCCTAAGTTCATTGATTCACAATCATGAACAATCTCCTCTAAGTTACTT
23000533 GATTTACTACTACTCCTCTAAACAACTCACTGATTTACGAGTCACAACTGACTCC
196 GATTTACTACTACTCCTCTAAACAACTCACTGATTTACGAGTCACAACTGACTCC
* * *
23000588 CTGATGTACGATCACAACCTACA-TTCATTGATTTACAATCATGAACAATATTCTCTGAGTTAGT
1 CTGATGTACGATCACAACCTA-AGTTCATTGATTTACAATCATAAAAAATATTCTCTGAGTTAGG
* * * *
23000652 TTATTTATTATCACTACTCCAAATAGCTCGCTAATTTACAACCACATCTGATATTATTAAGGCTC
65 TGATTTACTATCACTACTCCAAATAGCTCCCTAATTTACAACCACAGCTGATATTATTAAGGCTC
* * *
23000717 GTTGATTTACAATCACAA-CCTAAGTTCATTGGTTCACAATCATGAACAATCTCCTTTAAGTTAC
130 ATTGATTTACAATCA-AAGCCTAAGTTCATTGATTCACAATCATGAACAATCTCCTCTAAGTTAC
23000781 TTGATTTA
194 TTGATTTA
23000789 TTATCACTAC
Statistics
Matches: 171, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
250 168 0.98
251 3 0.02
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (250 bp):
CTGATGTACGATCACAACCTAAGTTCATTGATTTACAATCATAAAAAATATTCTCTGAGTTAGGT
GATTTACTATCACTACTCCAAATAGCTCCCTAATTTACAACCACAGCTGATATTATTAAGGCTCA
TTGATTTACAATCAAAGCCTAAGTTCATTGATTCACAATCATGAACAATCTCCTCTAAGTTACTT
GATTTACTACTACTCCTCTAAACAACTCACTGATTTACGAGTCACAACTGACTCC
Found at i:23001147 original size:3 final size:3
Alignment explanation
Indices: 23001139--23001409 Score: 310
Period size: 3 Copynumber: 90.0 Consensus size: 3
23001129 CAGTGAGCTA
23001139 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
23001187 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TC TTC CTC TATC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC
*
23001232 TTC TCTA TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TC TTC
1 TTC T-TC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * *
23001277 CTC ATCC TTC -TC ATT- TTCC TTC TTC TTC -TC ATT- TTCC TTT TTC
1 TTC -TTC TTC TTC -TTC TT-C TTC TTC TTC TTC -TTC TT-C TTC TTC
* *
23001320 TTC TTC TCC TCC TTC TTC TT- TTCC TTC -TC TT- TCTC ATT- TTCC TTC
1 TTC TTC TTC TTC TTC TTC TTC TT-C TTC TTC TTC T-TC -TTC TT-C TTC
23001365 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
23001410 GATAGCATTT
Statistics
Matches: 235, Mismatches: 12, Indels: 42
0.81 0.04 0.15
Matches are distributed among these distances:
2 19 0.08
3 198 0.84
4 17 0.07
5 1 0.00
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:23003968 original size:22 final size:22
Alignment explanation
Indices: 23003940--23003981 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
23003930 CCACCCGACG
23003940 CACATTTATGACTAATTAACAC
1 CACATTTATGACTAATTAACAC
23003962 CACATTTATGACTAATTAAC
1 CACATTTATGACTAATTAAC
23003982 TATCATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.33
Consensus pattern (22 bp):
CACATTTATGACTAATTAACAC
Found at i:23009845 original size:22 final size:24
Alignment explanation
Indices: 23009820--23009863 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
23009810 AAATTGGTTG
*
23009820 TATAAAAATA-AAAAT-ATTAACT
1 TATAAAAAAACAAAATGATTAACT
23009842 TATAAAAAAACAAAATGATTAA
1 TATAAAAAAACAAAATGATTAA
23009864 AATTTGCAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 5 0.26
24 5 0.26
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (24 bp):
TATAAAAAAACAAAATGATTAACT
Found at i:23010953 original size:22 final size:22
Alignment explanation
Indices: 23010928--23010979 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
23010918 ATGAATCTAA
23010928 TATAATTTCC-ACAATTTTAATT
1 TATAATTTCCTA-AATTTTAATT
***
23010950 TATAAACCCCTAAATTTTAATT
1 TATAATTTCCTAAATTTTAATT
23010972 TATAATTT
1 TATAATTT
23010980 TCATAATTAG
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.48
Consensus pattern (22 bp):
TATAATTTCCTAAATTTTAATT
Found at i:23011355 original size:16 final size:15
Alignment explanation
Indices: 23011336--23011376 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
23011326 TACAAACAAT
*
23011336 AAATTTTGAATATTCA
1 AAATTTTAAATATT-A
23011352 AAATTTTAAATATTA
1 AAATTTTAAATATTA
23011367 AATATTTTAA
1 AA-ATTTTAA
23011377 TTCCCAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 3 0.13
16 20 0.87
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (15 bp):
AAATTTTAAATATTA
Found at i:23012070 original size:6 final size:6
Alignment explanation
Indices: 23012061--23012094 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
23012051 CTCAATCATT
23012061 ATCACC ATCACC ATCACC ATCACC ATCACC ATCA
1 ATCACC ATCACC ATCACC ATCACC ATCACC ATCA
23012095 TATATAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.18
Consensus pattern (6 bp):
ATCACC
Found at i:23012128 original size:8 final size:8
Alignment explanation
Indices: 23012117--23012143 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
23012107 TAAAGTAAAC
23012117 AAACATTA
1 AAACATTA
23012125 AAACATTA
1 AAACATTA
23012133 AAACATTA
1 AAACATTA
23012141 AAA
1 AAA
23012144 TTGTGATTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (8 bp):
AAACATTA
Found at i:23012508 original size:10 final size:9
Alignment explanation
Indices: 23012475--23012535 Score: 61
Period size: 9 Copynumber: 6.6 Consensus size: 9
23012465 TTCACATCCT
23012475 TCTCTCAAC
1 TCTCTCAAC
*
23012484 TC-CTTCAAT
1 TCTC-TCAAC
23012493 TCTCTCAAAC
1 TCTCTC-AAC
23012503 TCTCTCAAAC
1 TCTCTC-AAC
* *
23012513 CCTCTCAAG
1 TCTCTCAAC
23012522 TCTCTCAAC
1 TCTCTCAAC
23012531 TCTCT
1 TCTCT
23012536 TGTTTTTAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
8 1 0.02
9 24 0.56
10 18 0.42
ACGTcount: A:0.23, C:0.41, G:0.02, T:0.34
Consensus pattern (9 bp):
TCTCTCAAC
Found at i:23012517 original size:12 final size:10
Alignment explanation
Indices: 23012493--23012535 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
23012483 CTCCTTCAAT
23012493 TCTCTCAAAC
1 TCTCTCAAAC
23012503 TCTCTCAAAC
1 TCTCTCAAAC
* *
23012513 CCTCTC-AAG
1 TCTCTCAAAC
23012522 TCTCTC-AAC
1 TCTCTCAAAC
23012531 TCTCT
1 TCTCT
23012536 TGTTTTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
9 14 0.48
10 15 0.52
ACGTcount: A:0.23, C:0.42, G:0.02, T:0.33
Consensus pattern (10 bp):
TCTCTCAAAC
Found at i:23014838 original size:24 final size:24
Alignment explanation
Indices: 23014805--23014861 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
23014795 TAGGCCTGCA
*
23014805 ACTCCAGATACATC-TCTGGATGCT
1 ACTCCGGATACATCTTC-GGATGCT
23014829 ACTCCGGATACATCTTCGGATGCT
1 ACTCCGGATACATCTTCGGATGCT
23014853 ACTCCGGAT
1 ACTCCGGAT
23014862 GCACCTCCGA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 29 0.94
25 2 0.06
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (24 bp):
ACTCCGGATACATCTTCGGATGCT
Found at i:23014860 original size:12 final size:12
Alignment explanation
Indices: 23014822--23014863 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
23014812 ATACATCTCT
23014822 GGATGCTACTCC
1 GGATGCTACTCC
* *
23014834 GGATAC-ATCTTC
1 GGATGCTA-CTCC
23014846 GGATGCTACTCC
1 GGATGCTACTCC
23014858 GGATGC
1 GGATGC
23014864 ACCTCCGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.19, C:0.29, G:0.26, T:0.26
Consensus pattern (12 bp):
GGATGCTACTCC
Found at i:23017167 original size:12 final size:12
Alignment explanation
Indices: 23017150--23017176 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
23017140 AACATTGGTC
23017150 TTGTTTTTTTTT
1 TTGTTTTTTTTT
23017162 TTGTTTTTTTTT
1 TTGTTTTTTTTT
23017174 TTG
1 TTG
23017177 CTAGAGCCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (12 bp):
TTGTTTTTTTTT
Found at i:23019163 original size:40 final size:41
Alignment explanation
Indices: 23019119--23019215 Score: 128
Period size: 40 Copynumber: 2.4 Consensus size: 41
23019109 GGAGTAATCC
*
23019119 TAACTTGTTTGAAAATCATTTTGA--TGTGTTAAAATGATTT
1 TAACTTGTTTGAAAATCATTTTGACTTG-GTTAAAATCATTT
*
23019159 TAACTTGGTTG-AAATCATTTTGACTTGGTTAAAATCATTT
1 TAACTTGTTTGAAAATCATTTTGACTTGGTTAAAATCATTT
*
23019199 TAACTTGATTTTAAAAT
1 TAACTTG-TTTGAAAAT
23019216 TGTTTCAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
39 12 0.24
40 29 0.59
41 4 0.08
42 4 0.08
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.46
Consensus pattern (41 bp):
TAACTTGTTTGAAAATCATTTTGACTTGGTTAAAATCATTT
Found at i:23019178 original size:20 final size:20
Alignment explanation
Indices: 23019119--23019205 Score: 97
Period size: 20 Copynumber: 4.3 Consensus size: 20
23019109 GGAGTAATCC
*
23019119 TAACTTGTTTGAAAATCATTT
1 TAACTTGGTT-AAAATCATTT
* *
23019140 TGA--TGTGTTAAAATGATTT
1 TAACTTG-GTTAAAATCATTT
*
23019159 TAACTTGGTTGAAATCATTT
1 TAACTTGGTTAAAATCATTT
*
23019179 TGACTTGGTTAAAATCATTT
1 TAACTTGGTTAAAATCATTT
23019199 TAACTTG
1 TAACTTG
23019206 ATTTTAAAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
19 13 0.24
20 37 0.69
21 4 0.07
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (20 bp):
TAACTTGGTTAAAATCATTT
Found at i:23023465 original size:318 final size:318
Alignment explanation
Indices: 23022885--23023500 Score: 1196
Period size: 318 Copynumber: 1.9 Consensus size: 318
23022875 CTTTCTCAAG
23022885 AATTTGTAAGCTTTTGTGACTCTAATGGGATCCATAGACAACTTACTGCAGCTTATACTCCTCAA
1 AATTTGTAAGCTTTTGTGACTCTAATGGGATCCATAGACAACTTACTGCAGCTTATACTCCTCAA
*
23022950 CAAAGCTTGGTAAGAGACTTGGAACATTACTTCTTAGTAATAGACTTCAAATAATATTTAAGATT
66 CAAAGCTTGGTAAGAGACTTGGAACATTACTTCTTAGTAAGAGACTTCAAATAATATTTAAGATT
23023015 ATTCGATTCTTTTCAGGTTGAAAAGAAAGTTTGAATGTTAATTAAATCCTTGTCAACAGAAACCC
131 ATTCGATTCTTTTCAGGTTGAAAAGAAAGTTTGAATGTTAATTAAATCCTTGTCAACAGAAACCC
*
23023080 TACACATGCTGTTCAAAATATGACACCGGAAGAAGCTTGGTCAGGTCGACAATCGGATGTACATC
196 TACACATGCTGTTCAAAATATGACACCGGAAGAAGCTTGGTCAGGTCGACAACCGGATGTACATC
23023145 ATTTCAGGGTGTTCAGATGTGTTGCTTATTCTCATGTGATCCATAGACAACTTACTTA
261 ATTTCAGGGTGTTCAGATGTGTTGCTTATTCTCATGTGATCCATAGACAACTTACTTA
23023203 AATTTGTAAGCTTTTGTGACTCTAATGGGATCCATAGACAACTTACTGCAGCTTATACTCCTCAA
1 AATTTGTAAGCTTTTGTGACTCTAATGGGATCCATAGACAACTTACTGCAGCTTATACTCCTCAA
23023268 CAAAGCTTGGTAAGAGACTTGGAACATTACTTCTTAGTAAGAGACTTCAAATAATATTTAAGATT
66 CAAAGCTTGGTAAGAGACTTGGAACATTACTTCTTAGTAAGAGACTTCAAATAATATTTAAGATT
23023333 ATTCGATTCTTTTCAGGTTGAAAAGAAAGTTTGAATGTTAATTAAATCCTTGTCAACAGAAACCC
131 ATTCGATTCTTTTCAGGTTGAAAAGAAAGTTTGAATGTTAATTAAATCCTTGTCAACAGAAACCC
* *
23023398 TGCACATGCTGTTCAAAATATGACACCGGAAGAAGCTTGGTCAGGTCGACAACCGGATGTGCATC
196 TACACATGCTGTTCAAAATATGACACCGGAAGAAGCTTGGTCAGGTCGACAACCGGATGTACATC
23023463 ATTTCAGGGTGTTCAGATGTGTTGCTTATTCTCATGTG
261 ATTTCAGGGTGTTCAGATGTGTTGCTTATTCTCATGTG
23023501 CTGGATCAGA
Statistics
Matches: 294, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
318 294 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (318 bp):
AATTTGTAAGCTTTTGTGACTCTAATGGGATCCATAGACAACTTACTGCAGCTTATACTCCTCAA
CAAAGCTTGGTAAGAGACTTGGAACATTACTTCTTAGTAAGAGACTTCAAATAATATTTAAGATT
ATTCGATTCTTTTCAGGTTGAAAAGAAAGTTTGAATGTTAATTAAATCCTTGTCAACAGAAACCC
TACACATGCTGTTCAAAATATGACACCGGAAGAAGCTTGGTCAGGTCGACAACCGGATGTACATC
ATTTCAGGGTGTTCAGATGTGTTGCTTATTCTCATGTGATCCATAGACAACTTACTTA
Found at i:23028610 original size:5 final size:5
Alignment explanation
Indices: 23028600--23028630 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
23028590 ACTTGGTTTG
23028600 TATTT TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT TATTT T
23028631 CAAATTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:23031733 original size:13 final size:14
Alignment explanation
Indices: 23031707--23031754 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
23031697 AGTTATATGA
*
23031707 TTTTATAAAATATT
1 TTTTATAAATTATT
23031721 TTTTAT-AATTATT
1 TTTTATAAATTATT
* *
23031734 TTTTATGAATTGAAT
1 TTTTATAAATT-ATT
23031749 TTTTAT
1 TTTTAT
23031755 TAAAAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
13 12 0.40
14 10 0.33
15 8 0.27
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (14 bp):
TTTTATAAATTATT
Found at i:23032391 original size:7 final size:7
Alignment explanation
Indices: 23032360--23032438 Score: 52
Period size: 7 Copynumber: 11.1 Consensus size: 7
23032350 ACTAATTAAT
23032360 CTAAACC
1 CTAAACC
*
23032367 CTTAACC
1 CTAAACC
* *
23032374 CTTATCTC
1 CTAAAC-C
23032382 CTAAACC
1 CTAAACC
*
23032389 CTAAATC
1 CTAAACC
* *
23032396 ATAAAAC
1 CTAAACC
*
23032403 ATAAACC
1 CTAAACC
23032410 CTAAACCC
1 CTAAA-CC
*
23032418 CTAACCC
1 CTAAACC
23032425 CT-AACC
1 CTAAACC
*
23032431 CTTAACC
1 CTAAACC
23032438 C
1 C
23032439 CTCTTTTACA
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
6 5 0.09
7 42 0.72
8 11 0.19
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:23032577 original size:21 final size:21
Alignment explanation
Indices: 23032560--23032611 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
23032550 TCTTAACCTT
23032560 TAACCCCTAACCCCTAACCCC
1 TAACCCCTAACCCCTAACCCC
* * ***
23032581 TAACCCTTAACCCTTAATTAC
1 TAACCCCTAACCCCTAACCCC
23032602 TAACCCCTAA
1 TAACCCCTAA
23032612 ACCTTATTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.44, G:0.00, T:0.23
Consensus pattern (21 bp):
TAACCCCTAACCCCTAACCCC
Found at i:23032594 original size:7 final size:7
Alignment explanation
Indices: 23032551--23032597 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
23032541 ATCACTAGCT
23032551 CTTAACC
1 CTTAACC
*
23032558 TTTAACC
1 CTTAACC
*
23032565 CCTAACC
1 CTTAACC
*
23032572 CCTAACC
1 CTTAACC
*
23032579 CCTAACC
1 CTTAACC
23032586 CTTAACC
1 CTTAACC
23032593 CTTAA
1 CTTAA
23032598 TTACTAACCC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.30, C:0.45, G:0.00, T:0.26
Consensus pattern (7 bp):
CTTAACC
Found at i:23032611 original size:7 final size:7
Alignment explanation
Indices: 23032560--23032593 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
23032550 TCTTAACCTT
23032560 TAACCCC
1 TAACCCC
23032567 TAACCCC
1 TAACCCC
23032574 TAACCCC
1 TAACCCC
*
23032581 TAACCCT
1 TAACCCC
23032588 TAACCC
1 TAACCC
23032594 TTAATTACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.29, C:0.53, G:0.00, T:0.18
Consensus pattern (7 bp):
TAACCCC
Found at i:23032804 original size:21 final size:21
Alignment explanation
Indices: 23032778--23032818 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
23032768 AACCTTAAAT
* *
23032778 CCCTAACTCTTAATCCCTAAC
1 CCCTAACCCTTAACCCCTAAC
23032799 CCCTAACCCTTAACCCCTAA
1 CCCTAACCCTTAACCCCTAA
23032819 ATCACAACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.46, G:0.00, T:0.24
Consensus pattern (21 bp):
CCCTAACCCTTAACCCCTAAC
Found at i:23033382 original size:41 final size:40
Alignment explanation
Indices: 23033276--23033391 Score: 135
Period size: 41 Copynumber: 2.9 Consensus size: 40
23033266 AAATGTTTTT
*
23033276 GCGGCGCTTTTTCAAAAACGCCGCTAAA-TCCCGAGCATTA
1 GCGGCGCTTTTT-AAAAACGCCGCTAAAGCCCCGAGCATTA
** * *
23033316 GCGGCGCTTCTTGGAAAATGACGCTAAAGCCCCGAGCATTA
1 GCGGCGCTT-TTTAAAAACGCCGCTAAAGCCCCGAGCATTA
* *
23033357 GCTGCTTCTTTTTAAAAACGCCGCTAAAGCCCCGA
1 GCGGC-GCTTTTTAAAAACGCCGCTAAAGCCCCGA
23033392 AAGATCACAA
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
40 21 0.34
41 38 0.61
42 3 0.05
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
GCGGCGCTTTTTAAAAACGCCGCTAAAGCCCCGAGCATTA
Found at i:23034529 original size:44 final size:44
Alignment explanation
Indices: 23034466--23034597 Score: 192
Period size: 44 Copynumber: 3.0 Consensus size: 44
23034456 TTAATGCAAT
* *
23034466 ATTTGGTAGTACAAAATTAGTTGAAAGCTCCAAAAGAGCTAATA
1 ATTTGATAGTACAAAATTAGTTGAAAGCTCCAGAAGAGCTAATA
* ** * *
23034510 ATTTGCTAGTACAAAATTAGTTGAAAGCTTTAGAACAGCTAATT
1 ATTTGATAGTACAAAATTAGTTGAAAGCTCCAGAAGAGCTAATA
*
23034554 ATTTGATAGTACAAAATTAGTTGAAAACTCCAGAAGAGCTAATA
1 ATTTGATAGTACAAAATTAGTTGAAAGCTCCAGAAGAGCTAATA
23034598 TATCAATATC
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 76 1.00
ACGTcount: A:0.42, C:0.11, G:0.17, T:0.30
Consensus pattern (44 bp):
ATTTGATAGTACAAAATTAGTTGAAAGCTCCAGAAGAGCTAATA
Found at i:23045357 original size:25 final size:24
Alignment explanation
Indices: 23045311--23045362 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
23045301 CATACCACAA
*
23045311 CTCTTTATCAGCGTCTCGATATAGG
1 CTCTTTATCAGCGTCTCAATAT-GG
*
23045336 CTCTTTATTAGCGT-TCTAATATGG
1 CTCTTTATCAGCGTCTC-AATATGG
23045360 CTC
1 CTC
23045363 AGTTAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.40
Consensus pattern (24 bp):
CTCTTTATCAGCGTCTCAATATGG
Found at i:23061322 original size:21 final size:22
Alignment explanation
Indices: 23061292--23061333 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
23061282 ATATATATCA
23061292 TGTTTAGTTAA-TAATTAAGTT
1 TGTTTAGTTAACTAATTAAGTT
*
23061313 TGTTTGGTTAACTTAATTAAG
1 TGTTTAGTTAAC-TAATTAAG
23061334 ATTTTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
23 8 0.44
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (22 bp):
TGTTTAGTTAACTAATTAAGTT
Found at i:23066968 original size:44 final size:45
Alignment explanation
Indices: 23066905--23066998 Score: 156
Period size: 44 Copynumber: 2.1 Consensus size: 45
23066895 TATTACAATA
23066905 CCATTCCATTCAACCAAACACA-AGAA-TACTATTACAGTTCTATT
1 CCATTCCATTCAACCAAACA-ATAGAATTACTATTACAGTTCTATT
*
23066949 CCATTCCATTCAACCAAACAATTGAATTACTATTACAGTTCTATT
1 CCATTCCATTCAACCAAACAATAGAATTACTATTACAGTTCTATT
23066994 CCATT
1 CCATT
23066999 ACAGCTCTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.49
45 23 0.49
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.33
Consensus pattern (45 bp):
CCATTCCATTCAACCAAACAATAGAATTACTATTACAGTTCTATT
Found at i:23067001 original size:16 final size:16
Alignment explanation
Indices: 23066980--23067047 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
23066970 TTGAATTACT
*
23066980 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
*
23066996 ATTACAGCTCTATTCT
1 ATTACAGCTCTATTCC
*
23067012 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
23067028 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
23067044 ATTA
1 ATTA
23067048 TAGCGAACCA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.41
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:23067873 original size:16 final size:16
Alignment explanation
Indices: 23067852--23067902 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
23067842 TTTGGTTCGC
23067852 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23067868 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
23067884 TGTAAT-GAATAGAGG
1 TGTATTGGATTAGAGG
23067899 TGTA
1 TGTA
23067903 ATAGCAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
15 12 0.36
16 21 0.64
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:23068159 original size:18 final size:17
Alignment explanation
Indices: 23068138--23068172 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23068128 TTATTATTAA
*
23068138 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23068156 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23068173 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23068238 original size:157 final size:157
Alignment explanation
Indices: 23068025--23068341 Score: 580
Period size: 157 Copynumber: 2.0 Consensus size: 157
23068015 TAGAATACCC
*
23068025 TTAGCATAAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* *
23068090 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
23068155 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
* * *
23068182 TTAGCAGAAATTTGTTTTGGTAAATTATTCTTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
23068247 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
23068312 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
23068339 TTA
1 TTA
23068342 ATATTCTTAT
Statistics
Matches: 154, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 154 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (157 bp):
TTAGCAGAAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:23068312 original size:16 final size:16
Alignment explanation
Indices: 23068275--23068316 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23068265 TTAATCATAT
*
23068275 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23068291 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23068306 TTAAAATATAT
1 TTAAAATATAT
23068317 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23068323 original size:14 final size:15
Alignment explanation
Indices: 23068284--23068325 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23068274 TTTAAACATA
*
23068284 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23068299 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23068313 A-TATAATTTAATA
1 ATTATAATTAAATA
23068326 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23072708 original size:13 final size:13
Alignment explanation
Indices: 23072690--23072717 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23072680 CAATACAGGC
23072690 AAGAACCGAAACA
1 AAGAACCGAAACA
23072703 AAGAACCGAAACA
1 AAGAACCGAAACA
23072716 AA
1 AA
23072718 TAATGCAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.21, G:0.14, T:0.00
Consensus pattern (13 bp):
AAGAACCGAAACA
Found at i:23074706 original size:3 final size:3
Alignment explanation
Indices: 23074698--23074773 Score: 98
Period size: 3 Copynumber: 25.3 Consensus size: 3
23074688 TCTTTAAAAA
* * * * * *
23074698 TAT TAT TAT TGT TAT TAT CAT GAT CAT GAT CAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23074746 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
23074774 CAAATCAAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:23076191 original size:17 final size:17
Alignment explanation
Indices: 23076169--23076213 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
23076159 TGAACTGGTC
23076169 ATAAAGTGACTATGATG
1 ATAAAGTGACTATGATG
23076186 ATAAAGTGACTATGATG
1 ATAAAGTGACTATGATG
23076203 ATAAAGTGACT
1 ATAAAGTGACT
23076214 CCAAGAACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (17 bp):
ATAAAGTGACTATGATG
Found at i:23079459 original size:74 final size:74
Alignment explanation
Indices: 23079338--23079475 Score: 240
Period size: 74 Copynumber: 1.9 Consensus size: 74
23079328 GGCTGTATAA
* * *
23079338 ACATTTTTTGTGGAATTTGAAATGTCAAGTTTCCTCTTAAAAACATCATTTTATGTGAAGTAAAG
1 ACATTGTTAGTGGAATTTGAAATGTCAAGTTTCCTCTTAAAAACATCATTTGATGTGAAGTAAAG
23079403 GCCGGATAG
66 GCCGGATAG
*
23079412 ACATTGTTAGTGGAATTTGAAATGTCAAGTTTCCTTTTAAAAACATCATTTGATGTGAAGTAAA
1 ACATTGTTAGTGGAATTTGAAATGTCAAGTTTCCTCTTAAAAACATCATTTGATGTGAAGTAAA
23079476 TATGTTGTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 60 1.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (74 bp):
ACATTGTTAGTGGAATTTGAAATGTCAAGTTTCCTCTTAAAAACATCATTTGATGTGAAGTAAAG
GCCGGATAG
Found at i:23080286 original size:59 final size:58
Alignment explanation
Indices: 23080209--23080403 Score: 241
Period size: 59 Copynumber: 3.3 Consensus size: 58
23080199 AAGCATACTC
* *
23080209 AATTATACAAATTATTACAACTATTGTAATGTTTTGTATAATTACACAAAACATTACCT
1 AATTACACAAATTATTACAA-TATTGTAATGTTTTGTATAATTACACAAAACATTGCCT
* * * *
23080268 AATTGCACAAATTGTTACAATATTTGTAATGTTTTGTTTAATTACACAAAACATTGGCT
1 AATTACACAAATTATTACAATA-TTGTAATGTTTTGTATAATTACACAAAACATTGCCT
* ** * *
23080327 AATTACACAAATTATTACAGATCTCATAAAGTTTTGTGTAATTACAC--AACATTGCCT
1 AATTACACAAATTATTACA-ATATTGTAATGTTTTGTATAATTACACAAAACATTGCCT
*
23080384 TATTACACAAATTATTACAA
1 AATTACACAAATTATTACAA
23080404 ATCTAATAAA
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
56 1 0.01
57 27 0.23
58 2 0.02
59 87 0.73
60 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (58 bp):
AATTACACAAATTATTACAATATTGTAATGTTTTGTATAATTACACAAAACATTGCCT
Found at i:23083075 original size:17 final size:18
Alignment explanation
Indices: 23083053--23083086 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
23083043 GATTGAGGAT
*
23083053 GGTTGTTGG-GGAATGGA
1 GGTTGTGGGAGGAATGGA
23083070 GGTTGTGGGAGGAATGG
1 GGTTGTGGGAGGAATGG
23083087 TTGACTCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.18, C:0.00, G:0.56, T:0.26
Consensus pattern (18 bp):
GGTTGTGGGAGGAATGGA
Found at i:23087398 original size:108 final size:108
Alignment explanation
Indices: 23087259--23087476 Score: 427
Period size: 108 Copynumber: 2.0 Consensus size: 108
23087249 CGAGGTATTT
23087259 TTGCTTCTGTTTGTTACTCTACATGTATAACTTACCAGAAAATATATCCTTTAAGATAGAATTTT
1 TTGCTTCTGTTTGTTACTCTACATGTATAACTTACCAGAAAATATATCCTTTAAGATAGAATTTT
23087324 TGTATCAAAGAAAATAGGAATTTAATTAACATGGTGTTTGTAC
66 TGTATCAAAGAAAATAGGAATTTAATTAACATGGTGTTTGTAC
*
23087367 TTGCTTCTGTTTGTTACTCTACATGTGTAACTTACCAGAAAATATATCCTTTAAGATAGAATTTT
1 TTGCTTCTGTTTGTTACTCTACATGTATAACTTACCAGAAAATATATCCTTTAAGATAGAATTTT
23087432 TGTATCAAAGAAAATAGGAATTTAATTAACATGGTGTTTGTAC
66 TGTATCAAAGAAAATAGGAATTTAATTAACATGGTGTTTGTAC
23087475 TT
1 TT
23087477 TTATACTTGC
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 109 1.00
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (108 bp):
TTGCTTCTGTTTGTTACTCTACATGTATAACTTACCAGAAAATATATCCTTTAAGATAGAATTTT
TGTATCAAAGAAAATAGGAATTTAATTAACATGGTGTTTGTAC
Found at i:23091845 original size:38 final size:38
Alignment explanation
Indices: 23091803--23091875 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
23091793 TGCGTACCCG
* *
23091803 TATTGATATGTTTTGATGTATCT-ATTTGGATTTATCGA
1 TATTGACATGTTTTAATGTA-CTGATTTGGATTTATCGA
*
23091841 TATTGACATGTTTTAATGTACTGTTTTGGATTTAT
1 TATTGACATGTTTTAATGTACTGATTTGGATTTAT
23091876 TGATTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 2 0.06
38 29 0.94
ACGTcount: A:0.23, C:0.05, G:0.18, T:0.53
Consensus pattern (38 bp):
TATTGACATGTTTTAATGTACTGATTTGGATTTATCGA
Found at i:23094222 original size:21 final size:21
Alignment explanation
Indices: 23094182--23094223 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23094172 TTTTCTTAAG
**
23094182 ATATGAATTGCATTGTATTGA
1 ATATGAATTGCATTAAATTGA
*
23094203 ATATGAATTGTATTAAATTGA
1 ATATGAATTGCATTAAATTGA
23094224 TGTTAAATTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (21 bp):
ATATGAATTGCATTAAATTGA
Found at i:23094721 original size:26 final size:26
Alignment explanation
Indices: 23094685--23094771 Score: 92
Period size: 26 Copynumber: 3.4 Consensus size: 26
23094675 TGAGTGTCCT
*
23094685 ATTATATGGCTCTTCGTGAGCTTCCCG
1 ATTA-ATGGCTCTTCGTGAGCTTCCCA
* *
23094712 ATTGAA-GGCTCTTTGTGAGCTTCCTA
1 ATT-AATGGCTCTTCGTGAGCTTCCCA
*
23094738 ATTAATGGCTCTTCG-GAGCTTTCCA
1 ATTAATGGCTCTTCGTGAGCTTCCCA
23094763 A-T-ATGGCTC
1 ATTAATGGCTC
23094772 GCTTGAACTT
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
23 7 0.13
24 1 0.02
25 11 0.21
26 28 0.54
27 4 0.08
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
ATTAATGGCTCTTCGTGAGCTTCCCA
Found at i:23094828 original size:24 final size:24
Alignment explanation
Indices: 23094801--23094862 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
23094791 TGGCATTCCG
23094801 GAGCTTCCCGTTATTGGCTCTTAT
1 GAGCTTCCCGTTATTGGCTCTTAT
*
23094825 GAGCTTCCTGATTA-TGGCTCTTAT
1 GAGCTTCCCG-TTATTGGCTCTTAT
*
23094849 GAGCTTCCCATTAT
1 GAGCTTCCCGTTAT
23094863 ACAGCCCAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 3 0.09
24 27 0.82
25 3 0.09
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.40
Consensus pattern (24 bp):
GAGCTTCCCGTTATTGGCTCTTAT
Found at i:23094916 original size:25 final size:25
Alignment explanation
Indices: 23094801--23094918 Score: 73
Period size: 25 Copynumber: 4.8 Consensus size: 25
23094791 TGGCATTCCG
* *
23094801 GAGCTTCCCGTTAT-TGGCTCTTAT
1 GAGCTTCCAGTTATATGGCTCATAT
* * *
23094825 GAGCTTCCTGAT-TATGGCTCTTAT
1 GAGCTTCCAGTTATATGGCTCATAT
** * *
23094849 GAGCTTCCCA-TTATACAGCCCAGAT
1 GAGCTT-CCAGTTATATGGCTCATAT
* * * *
23094874 AAGCTTCCCA-ATACATGGCTCACAT
1 GAGCTT-CCAGTTATATGGCTCATAT
23094899 GAGCTTCCAGTTATATGGCT
1 GAGCTTCCAGTTATATGGCT
23094919 TGAGAGAGGG
Statistics
Matches: 71, Mismatches: 19, Indels: 7
0.73 0.20 0.07
Matches are distributed among these distances:
23 1 0.01
24 30 0.42
25 40 0.56
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (25 bp):
GAGCTTCCAGTTATATGGCTCATAT
Found at i:23099379 original size:12 final size:12
Alignment explanation
Indices: 23099362--23099393 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
23099352 AAGATGCTGT
*
23099362 TGTGGTGCATAG
1 TGTGGTGCATAA
23099374 TGTGGTGCATAA
1 TGTGGTGCATAA
23099386 TGTGGTGC
1 TGTGGTGC
23099394 TTGTGAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.09, G:0.41, T:0.34
Consensus pattern (12 bp):
TGTGGTGCATAA
Found at i:23101515 original size:29 final size:29
Alignment explanation
Indices: 23101483--23101545 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
23101473 CATTTATCTT
*
23101483 AGATCGCCACAAAGGGATCCTTTTAACAG
1 AGATCGCCACAAAGGCATCCTTTTAACAG
* * * *
23101512 AGATTGCCACAAATGCTTTCTTTTAACAG
1 AGATCGCCACAAAGGCATCCTTTTAACAG
23101541 AGATC
1 AGATC
23101546 ACTATAAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
AGATCGCCACAAAGGCATCCTTTTAACAG
Found at i:23101554 original size:29 final size:29
Alignment explanation
Indices: 23101502--23101564 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
23101492 CAAAGGGATC
** *
23101502 CTTTTAACAGAGATTGCCACAAATGCTTT
1 CTTTTAACAGAGATCACCACAAATACTTT
* *
23101531 CTTTTAACAGAGATCACTATAAATACTTT
1 CTTTTAACAGAGATCACCACAAATACTTT
*
23101560 TTTTT
1 CTTTT
23101565 TCAGAAATAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (29 bp):
CTTTTAACAGAGATCACCACAAATACTTT
Found at i:23114153 original size:18 final size:18
Alignment explanation
Indices: 23114126--23114160 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23114116 AAACAAAACT
23114126 TGAGAAAATTAAGAGAGG
1 TGAGAAAATTAAGAGAGG
* *
23114144 TGAGAGAATTGAGAGAG
1 TGAGAAAATTAAGAGAG
23114161 TTGGATTTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.37, T:0.17
Consensus pattern (18 bp):
TGAGAAAATTAAGAGAGG
Found at i:23114711 original size:18 final size:18
Alignment explanation
Indices: 23114668--23114711 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
23114658 TTCTCATGTT
*
23114668 TTTATATAATTTACATTAA
1 TTTATA-AATTTAAATTAA
* *
23114687 TTCATAAATTTAAATTTA
1 TTTATAAATTTAAATTAA
23114705 TTTATAA
1 TTTATAA
23114712 TTACTTGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (18 bp):
TTTATAAATTTAAATTAA
Found at i:23114891 original size:26 final size:26
Alignment explanation
Indices: 23114821--23114894 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
23114811 TTAGGGCTAA
*
23114821 TTTGATAA-TGCTTTT-AAAAAGTACT
1 TTTGAGAAGTGCTTTTGAAAAA-TACT
* *
23114846 TTTGAGAAGTGCTGTGGAAAAATACT
1 TTTGAGAAGTGCTTTTGAAAAATACT
*
23114872 TTTGAGAAGTGTTTTTGAAAAAT
1 TTTGAGAAGTGCTTTTGAAAAAT
23114895 TTGAGTGTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
25 7 0.17
26 29 0.71
27 5 0.12
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.39
Consensus pattern (26 bp):
TTTGAGAAGTGCTTTTGAAAAATACT
Found at i:23124417 original size:14 final size:16
Alignment explanation
Indices: 23124398--23124430 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
23124388 AAATCGCAAC
23124398 AAATCAT-TTTT-CTA
1 AAATCATATTTTGCTA
23124412 AAATCATATTTTGCTA
1 AAATCATATTTTGCTA
23124428 AAA
1 AAA
23124431 ACCAATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 4 0.24
16 6 0.35
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (16 bp):
AAATCATATTTTGCTA
Found at i:23126932 original size:29 final size:30
Alignment explanation
Indices: 23126844--23127077 Score: 234
Period size: 29 Copynumber: 8.0 Consensus size: 30
23126834 TATTGACGAT
* *
23126844 CATCG-ACTAATGAAAAGGGATAGTCTCGAC
1 CATCGAACT-ATGAAAAGGGATGGTGTCGAC
* * *
23126874 TATCGAACAATGAAAAGGGATGGTGACGAC
1 CATCGAACTATGAAAAGGGATGGTGTCGAC
*
23126904 CATCGAA-TATGAAAAGGGATAGCT-TCGAC
1 CATCGAACTATGAAAAGGGAT-GGTGTCGAC
* * * **
23126933 TATCG-ATTATGAAAAGGGATAGTGAGGAC
1 CATCGAACTATGAAAAGGGATGGTGTCGAC
**
23126962 CATC-AACTATGAAAAGGGATGGTGAGGAC
1 CATCGAACTATGAAAAGGGATGGTGTCGAC
23126991 CATC-AACTATGAAAAGGGATGGTGAT-GAC
1 CATCGAACTATGAAAAGGGATGGTG-TCGAC
* *
23127020 CATC-AACTATGAAAAGGGATGGTTTTGAC
1 CATCGAACTATGAAAAGGGATGGTGTCGAC
*
23127049 CATCGAA-TATGAAAAGGGATGGTGACGAC
1 CATCGAACTATGAAAAGGGATGGTGTCGAC
23127078 TATCAAAATT
Statistics
Matches: 174, Mismatches: 22, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
28 3 0.02
29 137 0.79
30 32 0.18
31 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.21
Consensus pattern (30 bp):
CATCGAACTATGAAAAGGGATGGTGTCGAC
Found at i:23126973 original size:58 final size:58
Alignment explanation
Indices: 23126837--23127106 Score: 290
Period size: 58 Copynumber: 4.6 Consensus size: 58
23126827 AATGGTGTAT
* * * * *
23126837 TGACGATCATCGACTAATGAAAAGGGATAGTCTCGACTATCGAACAATGAAAAGGGATGG
1 TGACGACCATCAACT-ATGAAAAGGGATAGTTTCGACCATCG-ACTATGAAAAGGGATGG
* * * *
23126897 TGACGACCATCGAA-TATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATAG
1 TGACGACCATC-AACTATGAAAAGGGATAGTTTCGACCATCGACTATGAAAAGGGATGG
* * *** *
23126955 TGAGGACCATCAACTATGAAAAGGGATGGTGAGGACCATCAACTATGAAAAGGGATGG
1 TGACGACCATCAACTATGAAAAGGGATAGTTTCGACCATCGACTATGAAAAGGGATGG
* * * *
23127013 TGATGACCATCAACTATGAAAAGGGATGGTTTTGACCATCGAATATGAAAAGGGATGG
1 TGACGACCATCAACTATGAAAAGGGATAGTTTCGACCATCGACTATGAAAAGGGATGG
* * *
23127071 TGACGACTATCAAAATTATGAAAATGGATAGTTTCG
1 TGACGACCATC--AACTATGAAAAGGGATAGTTTCG
23127107 GTTATCGTAA
Statistics
Matches: 177, Mismatches: 29, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
57 2 0.01
58 120 0.68
59 24 0.14
60 30 0.17
61 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (58 bp):
TGACGACCATCAACTATGAAAAGGGATAGTTTCGACCATCGACTATGAAAAGGGATGG
Found at i:23126992 original size:87 final size:88
Alignment explanation
Indices: 23126844--23127106 Score: 275
Period size: 87 Copynumber: 3.0 Consensus size: 88
23126834 TATTGACGAT
* * *
23126844 CATCGACTAATGAAAAGGGATAGTCTCGACTATCGAACAATGAAAAGGGATGGTGACGACCATCG
1 CATCAACT-ATGAAAAGGGATAGTCTCGACCATCGAACTATGAAAAGGGATGGTGACGACCATC-
23126909 AA-TATGAAAAGGGATAGCTTCGAC
64 AACTATGAAAAGGGATAGCTTCGAC
* * * *** *
23126933 TATCGATTATGAAAAGGGATAGTGAGGACCATC-AACTATGAAAAGGGATGGTGAGGACCATCAA
1 CATCAACTATGAAAAGGGATAGTCTCGACCATCGAACTATGAAAAGGGATGGTGACGACCATCAA
*
23126997 CTATGAAAAGGGAT-GGTGAT-GAC
66 CTATGAAAAGGGATAGCT--TCGAC
* * * *
23127020 CATCAACTATGAAAAGGGATGGTTTTGACCATCGAA-TATGAAAAGGGATGGTGACGACTATCAA
1 CATCAACTATGAAAAGGGATAGTCTCGACCATCGAACTATGAAAAGGGATGGTGACGACCATC--
* * *
23127084 AATTATGAAAATGGATAGTTTCG
64 AACTATGAAAAGGGATAGCTTCG
23127107 GTTATCGTAA
Statistics
Matches: 145, Mismatches: 21, Indels: 16
0.80 0.12 0.09
Matches are distributed among these distances:
86 4 0.03
87 93 0.64
88 25 0.17
89 21 0.14
90 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (88 bp):
CATCAACTATGAAAAGGGATAGTCTCGACCATCGAACTATGAAAAGGGATGGTGACGACCATCAA
CTATGAAAAGGGATAGCTTCGAC
Found at i:23129886 original size:24 final size:23
Alignment explanation
Indices: 23129837--23129886 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
23129827 AAACAATCTT
* * *
23129837 CCATGTAGGTTTTGGATAAGCCA
1 CCATGTAGGTTGTAGAAAAGCCA
23129860 CCATGTAGGTTGTAGACAAAGCCA
1 CCATGTAGGTTGTAGA-AAAGCCA
23129884 CCA
1 CCA
23129887 ATTCTTACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (23 bp):
CCATGTAGGTTGTAGAAAAGCCA
Found at i:23134754 original size:13 final size:13
Alignment explanation
Indices: 23134736--23134786 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 13
23134726 GCGTGTGCCA
23134736 CACACGGGTGGTT
1 CACACGGGTGGTT
*
23134749 CACACGGGCATGTGCTG
1 CACACGGG--TG-G-TT
23134766 CACACGGGTGGTT
1 CACACGGGTGGTT
23134779 CACACGGG
1 CACACGGG
23134787 CGTGTGCCGC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
13 17 0.53
14 1 0.03
15 4 0.12
16 1 0.03
17 9 0.28
ACGTcount: A:0.18, C:0.27, G:0.37, T:0.18
Consensus pattern (13 bp):
CACACGGGTGGTT
Found at i:23134755 original size:30 final size:30
Alignment explanation
Indices: 23134719--23134823 Score: 156
Period size: 30 Copynumber: 3.5 Consensus size: 30
23134709 GTTTATGAAC
*
23134719 CACACGGGCGTGTGCCACACACGGGTGGTT
1 CACACGGGCGTGTGCCGCACACGGGTGGTT
* *
23134749 CACACGGGCATGTGCTGCACACGGGTGGTT
1 CACACGGGCGTGTGCCGCACACGGGTGGTT
*
23134779 CACACGGGCGTGTGCCGCACACAGGTGGTT
1 CACACGGGCGTGTGCCGCACACGGGTGGTT
* *
23134809 CACATGGCCGTGTGC
1 CACACGGGCGTGTGC
23134824 TGCTTTAGGA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.16, C:0.30, G:0.36, T:0.18
Consensus pattern (30 bp):
CACACGGGCGTGTGCCGCACACGGGTGGTT
Found at i:23134993 original size:21 final size:21
Alignment explanation
Indices: 23134943--23134994 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
23134933 GCACGTCTTT
* *
23134943 TAGTCACACGGTCATGTGTCA
1 TAGTCACACGGGCATGTATCA
* *
23134964 CAGTGACACGGGCATGTATGC-
1 TAGTCACACGGGCATGTAT-CA
23134985 TAGTCACACG
1 TAGTCACACG
23134995 ACCATGTCTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (21 bp):
TAGTCACACGGGCATGTATCA
Found at i:23142851 original size:8 final size:8
Alignment explanation
Indices: 23142838--23142874 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
23142828 TATTTTAATT
23142838 TTAAAATA
1 TTAAAATA
23142846 TTAAAATA
1 TTAAAATA
23142854 TTAAAA-A
1 TTAAAATA
*
23142861 -TCAAATA
1 TTAAAATA
23142868 TTAAAAT
1 TTAAAAT
23142875 GTGTATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
6 4 0.16
7 2 0.08
8 19 0.76
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (8 bp):
TTAAAATA
Found at i:23142970 original size:26 final size:27
Alignment explanation
Indices: 23142941--23142992 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
23142931 AATAATATTC
*
23142941 TTAATATATTATTAA-AAATATTTATA
1 TTAATATATTAATAATAAATATTTATA
*
23142967 TTAATATTTTAATAATAAATATTTAT
1 TTAATATATTAATAATAAATATTTAT
23142993 TACAATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (27 bp):
TTAATATATTAATAATAAATATTTATA
Found at i:23142991 original size:27 final size:27
Alignment explanation
Indices: 23142918--23142992 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
23142908 TATAATAAAT
* * *
23142918 TATTTTAACAATAAATA-ATATTCTTAA
1 TATTTTAATAATAAATATTTA-TATTAA
* *
23142945 TATATTATTAA-AAATATTTATATTAA
1 TATTTTAATAATAAATATTTATATTAA
23142971 TATTTTAATAATAAATATTTAT
1 TATTTTAATAATAAATATTTAT
23142993 TACAATTTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
26 19 0.49
27 20 0.51
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (27 bp):
TATTTTAATAATAAATATTTATATTAA
Found at i:23143871 original size:24 final size:24
Alignment explanation
Indices: 23143840--23143897 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
23143830 CGCACCTTTG
23143840 GATT-CACCTCTGGATGCACTACC
1 GATTGCACCTCTGGATGCACTACC
* * **
23143863 GGTTGCACCTTTGGATGCACTTTC
1 GATTGCACCTCTGGATGCACTACC
23143887 GATTGCACCTC
1 GATTGCACCTC
23143898 CAGTTGAACC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 3 0.11
24 25 0.89
ACGTcount: A:0.17, C:0.31, G:0.21, T:0.31
Consensus pattern (24 bp):
GATTGCACCTCTGGATGCACTACC
Done.