Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 ID=Chr06-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51074515
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 971674 characters in sequence are not A, C, G, or T
File 84 of 168
Found at i:24830139 original size:19 final size:19
Alignment explanation
Indices: 24830117--24830220 Score: 100
Period size: 19 Copynumber: 5.2 Consensus size: 19
24830107 TCTTTAAGCA
*
24830117 TCAAGCATGGATGGATGTT
1 TCAAGCATAGATGGATGTT
24830136 TCAAGCATAGATGGATGTT
1 TCAAGCATAGATGGATGTT
* *
24830155 TCAAGCAAATATGGATGTT
1 TCAAGCATAGATGGATGTT
* * * *
24830174 ACAAACAAAGATGGACGATT
1 TCAAGCATAGATGGATG-TT
24830194 TCAAGCATGGAGCATGGATAGTT
1 TCAAGCAT--AG-ATGGAT-GTT
24830217 TCAA
1 TCAA
24830221 TCCATAAAGA
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
19 48 0.70
20 7 0.10
22 2 0.03
23 11 0.16
24 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (19 bp):
TCAAGCATAGATGGATGTT
Found at i:24830300 original size:51 final size:50
Alignment explanation
Indices: 24830199--24830354 Score: 154
Period size: 51 Copynumber: 3.1 Consensus size: 50
24830189 CGATTTCAAG
* * * *
24830199 CATGGAGCATGGATAGTTTCAATCCATAAAGAC-GTTTTTCTTATTAAAATA
1 CATGG-GCATGGAT-GTTTCAATGCATGAAGACATTTTTTCTCATTAAAATA
*
24830250 CATGGGCATGGATGGTTTCAATGCATGAAGACATTTTTTCTCATTTAAATA
1 CATGGGCATGGAT-GTTTCAATGCATGAAGACATTTTTTCTCATTAAAATA
* * * * **
24830301 CATGAGCATGGACTGTTTCAAAGAATGAAAACATATTTTT-TCATCCAAATA
1 CATGGGCATGGA-TGTTTCAATGCATGAAGACAT-TTTTTCTCATTAAAATA
24830352 CAT
1 CAT
24830355 TTGCATGGGT
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
50 24 0.27
51 60 0.67
52 6 0.07
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (50 bp):
CATGGGCATGGATGTTTCAATGCATGAAGACATTTTTTCTCATTAAAATA
Found at i:24830403 original size:22 final size:22
Alignment explanation
Indices: 24830377--24830420 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
24830367 GTTCAAAGCA
24830377 TGGACAATTTTCTT-ATTCAATT
1 TGGAC-ATTTTCTTCATTCAATT
*
24830399 TGGACATTTTTTTCATTCAATT
1 TGGACATTTTCTTCATTCAATT
24830421 ATATGTTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.25, C:0.14, G:0.09, T:0.52
Consensus pattern (22 bp):
TGGACATTTTCTTCATTCAATT
Found at i:24831260 original size:96 final size:96
Alignment explanation
Indices: 24831093--24831269 Score: 221
Period size: 96 Copynumber: 1.8 Consensus size: 96
24831083 AAACATCAAC
* * * * * * * *
24831093 AAAAATTTTCTTGTGTGTTTATTGTTATTGAAGTCATTTTAAATCTTTTGGTGCAATTTGGTGGT
1 AAAAAATTTCTTATGTGATTAGTGTTATTGAAGCCATTTTAAATCTTTTGGTGCAATTTAGAGGA
*
24831158 AGTAAAAATTTTCTTTTGTAAAAAATGCCAT
66 ACTAAAAATTTTCTTTTGTAAAAAATGCCAT
* ***
24831189 AAAAAATTTCTTATGTGATTAGTGTTTTTGAAGCCATTTTACAA-CTTTTGGTGTGGTTTAGAGG
1 AAAAAATTTCTTATGTGATTAGTGTTATTGAAGCCATTTTA-AATCTTTTGGTGCAATTTAGAGG
24831253 AACTAAAAATTTTCTTT
65 AACTAAAAATTTTCTTT
24831270 CGTCAATTTT
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
96 65 0.97
97 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (96 bp):
AAAAAATTTCTTATGTGATTAGTGTTATTGAAGCCATTTTAAATCTTTTGGTGCAATTTAGAGGA
ACTAAAAATTTTCTTTTGTAAAAAATGCCAT
Found at i:24833344 original size:24 final size:24
Alignment explanation
Indices: 24833294--24833364 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 24
24833284 GAAAATAAGT
* * * * *
24833294 AAGAGAAAAGAAAAAGATAAGGTA
1 AAGAAAAAAGAAAATGAGAAAGAA
24833318 AAGAAAAAAGAAAATGAGAAAGAA
1 AAGAAAAAAGAAAATGAGAAAGAA
* * *
24833342 AAGAAAAGACAAAATGAGCAAGA
1 AAGAAAAAAGAAAATGAGAAAGA
24833365 GAGAGAGAGA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.69, C:0.03, G:0.23, T:0.06
Consensus pattern (24 bp):
AAGAAAAAAGAAAATGAGAAAGAA
Found at i:24836187 original size:19 final size:20
Alignment explanation
Indices: 24836161--24836207 Score: 78
Period size: 19 Copynumber: 2.4 Consensus size: 20
24836151 TCTTCAAGCA
24836161 TCAAGCATGGATGGACG-TT
1 TCAAGCATGGATGGACGCTT
*
24836180 TTAAGCATGGATGGACGCTT
1 TCAAGCATGGATGGACGCTT
24836200 TCAAGCAT
1 TCAAGCAT
24836208 AGAGGATGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (20 bp):
TCAAGCATGGATGGACGCTT
Found at i:24836224 original size:23 final size:24
Alignment explanation
Indices: 24836188--24836235 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
24836178 TTTTAAGCAT
**
24836188 GGATGGACGCTTTCAA-GCATAGA
1 GGATGGACAATTTCAATGCATAGA
*
24836211 GGATGGACAATTTCAATGTATAGA
1 GGATGGACAATTTCAATGCATAGA
24836235 G
1 G
24836236 ATGTTTTTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (24 bp):
GGATGGACAATTTCAATGCATAGA
Found at i:24836275 original size:50 final size:50
Alignment explanation
Indices: 24836221--24836331 Score: 150
Period size: 50 Copynumber: 2.2 Consensus size: 50
24836211 GGATGGACAA
* ** * *
24836221 TTTCAATGTATAGAGATGTTTTTCTCATTCAAATACTTAAGTATGGAGGG
1 TTTCAATGCATAGAGACATTTTTCTCATTCAAATACATAAGCATGGAGGG
* * *
24836271 TTTCAATGCATATAGACATTTTTCTCATTTAAATACATAAGCATGGATGG
1 TTTCAATGCATAGAGACATTTTTCTCATTCAAATACATAAGCATGGAGGG
24836321 TTTCAATGCAT
1 TTTCAATGCAT
24836332 GAAAACACTA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.40
Consensus pattern (50 bp):
TTTCAATGCATAGAGACATTTTTCTCATTCAAATACATAAGCATGGAGGG
Found at i:24836438 original size:40 final size:39
Alignment explanation
Indices: 24836387--24836529 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 39
24836377 GTTTGAATAA
24836387 AAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTTC
1 AAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTTC
* * * *
24836426 AAAAATCACCGCTAAAGATCCAGCATTAGCGGCGCTTTTTG
1 AAAAA-CGCCGCTAAAAATCAAGCATTAGCGGCGC-TTTTC
* * * *
24836467 GAAAACGCCGCTAAAAAT-GAGCATTAGCGGCGTTTTTT
1 AAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTTC
24836505 AGAAAAGCGCCGC-AAAAATCTAAGC
1 A-AAAA-CGCCGCTAAAAATC-AAGC
24836530 CCAACGACAT
Statistics
Matches: 86, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
38 4 0.05
39 28 0.33
40 43 0.50
41 11 0.13
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (39 bp):
AAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTTC
Found at i:24836746 original size:82 final size:83
Alignment explanation
Indices: 24836560--24836751 Score: 244
Period size: 83 Copynumber: 2.3 Consensus size: 83
24836550 CCTTTCAAGG
* *
24836560 CTTTAGCGGCGTTTTTGGGAAAGCGCTACTAATGCTCAAACCTTTAGCGGCGTTTTTTGGAAAAG
1 CTTTAGCGGCGTTTTTGGAAAAGCGCTACTAATGCTCAAACCTTTAGCAGCGTTTTTTGGAAAAG
*
24836625 CGTCACTAATGCTCAGAC
66 CGCCACTAATGCTCAGAC
* * * * * * *
24836643 CTTTAACAGCGTTTATGGAAAAGTG-TCGCTAATGCTTAGACCTTTAGCAGCG-TTTTTGGAAAA
1 CTTTAGCGGCGTTTTTGGAAAAGCGCT-ACTAATGCTCAAACCTTTAGCAGCGTTTTTTGGAAAA
*
24836706 GCGCCGCTAATGCTCAGAC
65 GCGCCACTAATGCTCAGAC
*
24836725 CTTTAGCGGCGTTTTTTGAAAAAGCGC
1 CTTTAGCGGCG-TTTTTGGAAAAGCGC
24836752 CGCAAAAACA
Statistics
Matches: 90, Mismatches: 16, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
82 38 0.42
83 52 0.58
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (83 bp):
CTTTAGCGGCGTTTTTGGAAAAGCGCTACTAATGCTCAAACCTTTAGCAGCGTTTTTTGGAAAAG
CGCCACTAATGCTCAGAC
Found at i:24836754 original size:42 final size:41
Alignment explanation
Indices: 24836560--24836754 Score: 246
Period size: 41 Copynumber: 4.7 Consensus size: 41
24836550 CCTTTCAAGG
* ** *
24836560 CTTTAGCGGCGTTTTTGGGAAAGCGCTACTAATGCTCAAAC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAC
* *
24836601 CTTTAGCGGCGTTTTTTGGAAAAGCGTCACTAATGCTCAGAC
1 CTTTAGCGGCG-TTTTTGGAAAAGCGCCGCTAATGCTCAGAC
* * * * * *
24836643 CTTTAACAGCGTTTATGGAAAAGTGTCGCTAATGCTTAGAC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAC
*
24836684 CTTTAGCAGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAC
*
24836725 CTTTAGCGGCGTTTTTTGAAAAAGCGCCGC
1 CTTTAGCGGCG-TTTTTGGAAAAGCGCCGC
24836755 AAAAACATTT
Statistics
Matches: 135, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
41 83 0.61
42 52 0.39
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAC
Found at i:24837351 original size:7 final size:7
Alignment explanation
Indices: 24837336--24837408 Score: 76
Period size: 7 Copynumber: 10.4 Consensus size: 7
24837326 TAAATAATGT
24837336 TTAGGGG
1 TTAGGGG
*
24837343 TTGGGGG
1 TTAGGGG
24837350 TT-GGGG
1 TTAGGGG
*
24837356 TTTGGGGG
1 -TTAGGGG
**
24837364 TTAGTAG
1 TTAGGGG
24837371 TTAGGGG
1 TTAGGGG
24837378 TTAGGGG
1 TTAGGGG
*
24837385 TTTGGGG
1 TTAGGGG
24837392 TTAGGGG
1 TTAGGGG
*
24837399 TTAGAGG
1 TTAGGGG
24837406 TTA
1 TTA
24837409 AAAGTTAGTG
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
6 4 0.07
7 47 0.85
8 4 0.07
ACGTcount: A:0.12, C:0.00, G:0.53, T:0.34
Consensus pattern (7 bp):
TTAGGGG
Found at i:24841999 original size:35 final size:35
Alignment explanation
Indices: 24841948--24842046 Score: 180
Period size: 35 Copynumber: 2.8 Consensus size: 35
24841938 ACTTATGTAA
*
24841948 TTCTAATGTAATTCTAATAGAGAATGTAAACAATT
1 TTCTTATGTAATTCTAATAGAGAATGTAAACAATT
24841983 TTCTTATGTAATTCTAATAGAGAATGTAAACAATT
1 TTCTTATGTAATTCTAATAGAGAATGTAAACAATT
*
24842018 TTCTTATGTAATTCTAATATAGAATGTAA
1 TTCTTATGTAATTCTAATAGAGAATGTAA
24842047 CTTGTTTTAA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 62 1.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.40
Consensus pattern (35 bp):
TTCTTATGTAATTCTAATAGAGAATGTAAACAATT
Found at i:24842379 original size:86 final size:86
Alignment explanation
Indices: 24842234--24842505 Score: 384
Period size: 86 Copynumber: 3.2 Consensus size: 86
24842224 AATTCATGTT
* * *
24842234 TTTAGCGGCATTTGTGGGAAAAGCACCGTTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAT
1 TTTAGCGGCGTTTGTGGGATAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAA-
*
24842299 A-CGCCGCTAAAGTTCTTGGTC
65 AGCGCCGCTAAAGGTCTTGGTC
* *
24842320 TTTAGCGGTGTTTGTGGGATAAGCACCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGCGTTTGTGGGATAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
*
24842385 GCGCTGCTAAAGGTCTTGGTC
66 GCGCCGCTAAAGGTCTTGGTC
* *
24842406 TTTAGTGGCGTTTGTGGGATAAGCACCGCTAAAGGTCTTGGTCTTTAGCAGCGTTTGTGGGAAAA
1 TTTAGCGGCGTTTGTGGGATAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
* * * * * *
24842471 GTGCTGCTAAAGTTACTCGTTT
66 GCGCCGCTAAAGGT-CTTGGTC
24842493 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
24842506 TTTTTTGCGC
Statistics
Matches: 167, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
85 1 0.01
86 150 0.90
87 16 0.10
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (86 bp):
TTTAGCGGCGTTTGTGGGATAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
GCGCCGCTAAAGGTCTTGGTC
Found at i:24842480 original size:129 final size:130
Alignment explanation
Indices: 24842234--24842505 Score: 359
Period size: 129 Copynumber: 2.1 Consensus size: 130
24842224 AATTCATGTT
* *
24842234 TTTAGCGGCATTTGTGGGAAAAGCACCGTTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAT
1 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAT
* * * * * *
24842299 ACGCCGCTAAAGTTCTTGGTCTTTAGCGGTGTTTGTGGGATAAGCACCGCTAAAGGT-CTTGATC
66 ACACCGCTAAAGGTCTTGGTCTTTAGCAGCGTTTGTGGGAAAAGCACCGCTAAAGGTACTCGATC
* * *
24842363 TTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCTTGGTCTTTAGTGGCGTTTGTGGGATAA
1 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGA-AA
* ** * * *
24842428 -GCACCGCTAAAGGTCTTGGTCTTTAGCAGCGTTTGTGGGAAAAGTGCTGCTAAAGTTACTCGTT
65 TACACCGCTAAAGGTCTTGGTCTTTAGCAGCGTTTGTGGGAAAAGCACCGCTAAAGGTACTCGAT
*
24842492 T
130 C
24842493 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
24842506 TTTTTTGCGC
Statistics
Matches: 123, Mismatches: 18, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
129 104 0.85
130 19 0.15
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (130 bp):
TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAT
ACACCGCTAAAGGTCTTGGTCTTTAGCAGCGTTTGTGGGAAAAGCACCGCTAAAGGTACTCGATC
Found at i:24842482 original size:43 final size:43
Alignment explanation
Indices: 24842234--24842471 Score: 352
Period size: 43 Copynumber: 5.5 Consensus size: 43
24842224 AATTCATGTT
* *
24842234 TTTAGCGGCATTTGTGGGAAAAGCACCGTTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTC
* *
24842277 TTTAGCGGCGTTTGTGGGAAATA-CGCCGCTAAAGTTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAA-AGCACCGCTAAAGGTCTTGGTC
* * *
24842320 TTTAGCGGTGTTTGTGGGATAAGCACCGCTAAAGGTCTTGATC
1 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTC
* *
24842363 TTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTC
* *
24842406 TTTAGTGGCGTTTGTGGGATAAGCACCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTC
*
24842449 TTTAGCAGCGTTTGTGGGAAAAG
1 TTTAGCGGCGTTTGTGGGAAAAG
24842472 TGCTGCTAAA
Statistics
Matches: 172, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
42 1 0.01
43 170 0.99
44 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTC
Found at i:24842639 original size:54 final size:54
Alignment explanation
Indices: 24842576--24842692 Score: 191
Period size: 53 Copynumber: 2.2 Consensus size: 54
24842566 TGTTGTAGTG
* * *
24842576 AGACATTTTTTTTTCTCATTAAAATACATGAGTATGGATGGTTTCAATGCATGA
1 AGACATTTTTTTTTCTCATTAAAATACATGAGTATGGAAGGTTTCAAAGAATGA
*
24842630 AGACA-TTTTTTTTCTCATTCAAATACATGAGTATGGAAGGTTTCAAAGAATGA
1 AGACATTTTTTTTTCTCATTAAAATACATGAGTATGGAAGGTTTCAAAGAATGA
24842683 AGACATTTTT
1 AGACATTTTT
24842693 CTCATCCAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
53 49 0.84
54 9 0.16
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.39
Consensus pattern (54 bp):
AGACATTTTTTTTTCTCATTAAAATACATGAGTATGGAAGGTTTCAAAGAATGA
Found at i:24848547 original size:13 final size:14
Alignment explanation
Indices: 24848529--24848569 Score: 57
Period size: 13 Copynumber: 2.9 Consensus size: 14
24848519 TAAAAGAGAA
24848529 ATTAATTAAAAA-G
1 ATTAATTAAAAATG
*
24848542 ATTAATTAAAAATTT
1 ATTAATTAAAAA-TG
24848557 ATTAATTAAAAAT
1 ATTAATTAAAAAT
24848570 TAAAAAAAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 12 0.48
14 1 0.04
15 12 0.48
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (14 bp):
ATTAATTAAAAATG
Found at i:24848562 original size:15 final size:15
Alignment explanation
Indices: 24848529--24848570 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
24848519 TAAAAGAGAA
24848529 ATTAATTAAAAA--G
1 ATTAATTAAAAATTG
*
24848542 ATTAATTAAAAATTT
1 ATTAATTAAAAATTG
24848557 ATTAATTAAAAATT
1 ATTAATTAAAAATT
24848571 AAAAAAAGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 12 0.46
15 14 0.54
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
ATTAATTAAAAATTG
Found at i:24853272 original size:2 final size:2
Alignment explanation
Indices: 24853265--24853302 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
24853255 AGTGATTCTT
24853265 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24853303 ACACAAATGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24854889 original size:17 final size:17
Alignment explanation
Indices: 24854867--24854899 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24854857 TTAAATCACC
24854867 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
*
24854884 TAAATTATTTTCTCAA
1 TAAATTAATTTCTCAA
24854900 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:24858390 original size:10 final size:10
Alignment explanation
Indices: 24858372--24858402 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
24858362 GTTCTTGTGC
*
24858372 TACTGTTTCT
1 TACTTTTTCT
24858382 TACTTTTTCT
1 TACTTTTTCT
24858392 TACTTTTTCT
1 TACTTTTTCT
24858402 T
1 T
24858403 TCTCTCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.19, G:0.03, T:0.68
Consensus pattern (10 bp):
TACTTTTTCT
Found at i:24859237 original size:44 final size:44
Alignment explanation
Indices: 24859176--24859392 Score: 148
Period size: 44 Copynumber: 4.7 Consensus size: 44
24859166 CTATCGTCAG
*
24859176 TCTGCTCCACTGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAA
** * * *
24859220 TCTGCTCCACTGCAACTTCAGAAAGATAAGATCCGCCATAACTTGTAGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAG----G------CTGGTGGCTTCAA
* * * ** * * * *
24859274 TCTGTTCCACTGCAAC-GCTAGGGAAATAAGATTCGCTGTCTTGAG
1 TCTGCTCCACTGCAACTTC-AGGGAGATAAGGCT-GGTGGCTTCAA
* * *
24859319 TTTGCTCCGCTGCAACTTCAGGGAGATAAGGCTAGTGGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAA
*
24859363 TCTGCTCCACTGCAACTTCAGGAAGATAAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAG
24859393 ATTTGCCATA
Statistics
Matches: 126, Mismatches: 34, Indels: 26
0.68 0.18 0.14
Matches are distributed among these distances:
44 61 0.48
45 29 0.23
46 1 0.01
48 1 0.01
53 1 0.01
54 33 0.26
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAA
Found at i:24859249 original size:182 final size:182
Alignment explanation
Indices: 24858898--24859249 Score: 424
Period size: 181 Copynumber: 1.9 Consensus size: 182
24858888 GGCTTCAATG
* * *
24858898 TGCTCCACTGCAACTTCAGAAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGC
1 TGCTCCACTGCAACTTCAGAAAGATAAGATCCG-C-TAATTTATAGCTTCAATCTGTTCCACTAC
* * * * * *
24858963 AACATCAGGGAAATAAGATTCGCTGTCTTCAGCTGCTCCGCTGCAACTTCAGGAGGATAAGGCTA
64 AACATCAGGGAAATAAGAGTCACTATCGTCAGCTGCTCCACTGAAACTTCAGGAGGATAAGGCTA
* ** * * *
24859028 GTATCTTTGACTTGCCCCACTGTAACTTTATGGAGATAAGGTTTGGATATGATC
129 GTAGCTTCAACTTGCCCCACTGCAACTTCATGAAGATAAGGTTTGGATATGATC
* * *
24859082 TGCTCTACTGCAACTTCAGAGAGATAAGATCTG-TAATTTATAGCTTCAATCTGTTCCACTACAA
1 TGCTCCACTGCAACTTCAGAAAGATAAGATCCGCTAATTTATAGCTTCAATCTGTTCCACTACAA
* *
24859146 CTTCAGGGAAATAAGAGTCACTATCGTCAGTCTGCTCCACTGAAACTTCAGG-GAGATAAGGCTG
66 CATCAGGGAAATAAGAGTCACTATCGTCAG-CTGCTCCACTGAAACTTCAGGAG-GATAAGGCTA
* *
24859210 GTGGCTTCAA-TCTGCTCCACTGCAACTTCA-GAAAGATAAG
129 GTAGCTTCAACT-TGCCCCACTGCAACTTCATG-AAGATAAG
24859250 ATCCGCCATA
Statistics
Matches: 142, Mismatches: 22, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
181 56 0.39
182 56 0.39
184 30 0.21
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (182 bp):
TGCTCCACTGCAACTTCAGAAAGATAAGATCCGCTAATTTATAGCTTCAATCTGTTCCACTACAA
CATCAGGGAAATAAGAGTCACTATCGTCAGCTGCTCCACTGAAACTTCAGGAGGATAAGGCTAGT
AGCTTCAACTTGCCCCACTGCAACTTCATGAAGATAAGGTTTGGATATGATC
Found at i:24859325 original size:143 final size:143
Alignment explanation
Indices: 24859079--24859546 Score: 622
Period size: 143 Copynumber: 3.3 Consensus size: 143
24859069 TTTGGATATG
* * * * * *
24859079 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG---TAATTTATAGCTTCAATCTGTTCCAC
1 ATCTGCTCCACTGCAACTTCAGAAAGATAAGATCCGCCATAACTTGTAGCTTTAATCTGTTCCAC
* * * * * * * *
24859141 TACAAC-TTCAGGGAAATAAGAGTCACTATCGTCAGTCTGCTCCACTGAAACTTCAGGGAGATAA
66 TGCAACGCT-AGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAA
24859205 GGCTGGTGGCTTCA
130 GGCTGGTGGCTTCA
24859219 ATCTGCTCCACTGCAACTTCAGAAAGATAAGATCCGCCATAACTTGTAGCTTTAATCTGTTCCAC
1 ATCTGCTCCACTGCAACTTCAGAAAGATAAGATCCGCCATAACTTGTAGCTTTAATCTGTTCCAC
* *
24859284 TGCAACGCTAGGGAAATAAGATTCGCTGTCTTGAGTTTGCTCCGCTGCAACTTCAGGGAGATAAG
66 TGCAACGCTAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAG
*
24859349 GCTAGTGGCTTCA
131 GCTGGTGGCTTCA
* ** *
24859362 ATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATAACTTGTAGCTTTAATTTGTTCCAC
1 ATCTGCTCCACTGCAACTTCAGAAAGATAAGATCCGCCATAACTTGTAGCTTTAATCTGTTCCAC
* * * * *
24859427 TGCAACGCCAAGGAAATAAGATTCGTTGTCTTCAGTCTGCTCTGCTGCAACTTTAGGGAGATAAG
66 TGCAACGCTAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAG
24859492 GCTGGTGGCTTCA
131 GCTGGTGGCTTCA
* * *
24859505 ATCTGCTCTATTGCAACTTCA-AGAAGATAAGATTCGCCATAA
1 ATCTGCTCCACTGCAACTTCAGA-AAGATAAGATCCGCCATAA
24859547 TGACTTCAAT
Statistics
Matches: 290, Mismatches: 33, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
140 33 0.11
143 256 0.88
144 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (143 bp):
ATCTGCTCCACTGCAACTTCAGAAAGATAAGATCCGCCATAACTTGTAGCTTTAATCTGTTCCAC
TGCAACGCTAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAG
GCTGGTGGCTTCA
Found at i:24859613 original size:143 final size:143
Alignment explanation
Indices: 24859189--24859613 Score: 476
Period size: 143 Copynumber: 3.0 Consensus size: 143
24859179 GCTCCACTGA
*
24859189 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTC-AGAAAGATAAGATC
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAG-AAGATAAGATT
*
24859253 CGCCATAACTTGTAGCTTTAA-TCTGTTCCACTGCAACGCTAGGGAAATAAGATTCGCTG--TCT
65 CGCCATAAC-TGTAGCTTTAATTC-GTTCCACTGCAACGCTAGGGAAATAAGATTCG-TGTTTCA
* *
24859315 TGAGTTTG-CTCCGCTGC
127 TGA-TCTGTCTCTGCTGC
* * *
24859332 AACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTT
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTC
* * *
24859397 GCCATAACTTGTAGCTTTAATTTGTTCCACTGCAACGCCAAGGAAATAAGATTCGTTGTCTTCA-
66 GCCATAAC-TGTAGCTTTAATTCGTTCCACTGCAACGCTAGGGAAATAAGATTCG-TGT-TTCAT
24859461 G-TCTG-CTCTGCTGC
128 GATCTGTCTCTGCTGC
* * *
24859475 AACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCTATTGCAACTTCAAGAAGATAAGATTC
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTC
* * * ** ** * *
24859540 GCCATAA-TG-A-CTTCAATTCATCCCACTATAACTTTAGGGATATAAGATTTGTGGTTTCACTG
66 GCCATAACTGTAGCTTTAATTCGTTCCACTGCAACGCTAGGGAAATAAGATTCGT-GTTTCA-TG
24859602 ATCTGTTCTCTG
129 ATCTG-TCTCTG
24859614 GAGAACATGA
Statistics
Matches: 242, Mismatches: 29, Indels: 22
0.83 0.10 0.08
Matches are distributed among these distances:
138 5 0.02
139 31 0.13
140 2 0.01
141 6 0.02
143 193 0.80
144 2 0.01
145 1 0.00
146 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (143 bp):
AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTC
GCCATAACTGTAGCTTTAATTCGTTCCACTGCAACGCTAGGGAAATAAGATTCGTGTTTCATGAT
CTGTCTCTGCTGC
Found at i:24863216 original size:12 final size:12
Alignment explanation
Indices: 24863199--24863232 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
24863189 TTTGGCTAAT
*
24863199 TGCTCTTGCAGC
1 TGCTCTTGCAAC
24863211 TGCTCTTGCAAC
1 TGCTCTTGCAAC
*
24863223 TGATCTTGCA
1 TGCTCTTGCA
24863233 TATCCTTCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.35
Consensus pattern (12 bp):
TGCTCTTGCAAC
Found at i:24864358 original size:19 final size:18
Alignment explanation
Indices: 24864330--24864369 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
24864320 GACTCGAACC
*
24864330 AATAAAGCAAACACATCAA
1 AATAAAGCAAAC-CATAAA
*
24864349 AATAATGCAAACCATAAA
1 AATAAAGCAAACCATAAA
24864367 AAT
1 AAT
24864370 GAAATGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.62, C:0.17, G:0.05, T:0.15
Consensus pattern (18 bp):
AATAAAGCAAACCATAAA
Found at i:24866739 original size:15 final size:16
Alignment explanation
Indices: 24866713--24866746 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
24866703 AAATGGATTT
*
24866713 TTTTATTTTTATTTGG
1 TTTTATTTTTATTTAG
24866729 TTTTA-TTTTATTTAG
1 TTTTATTTTTATTTAG
24866744 TTT
1 TTT
24866747 GGGCCCAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (16 bp):
TTTTATTTTTATTTAG
Found at i:24870961 original size:74 final size:74
Alignment explanation
Indices: 24870878--24871026 Score: 298
Period size: 74 Copynumber: 2.0 Consensus size: 74
24870868 AACCTCCGAA
24870878 TTTGTGTTTCATTCACATGTTACAAGGATTCGAGAGTGATTATTCATGTATAGCAACATCTCATT
1 TTTGTGTTTCATTCACATGTTACAAGGATTCGAGAGTGATTATTCATGTATAGCAACATCTCATT
24870943 TGGAGATCT
66 TGGAGATCT
24870952 TTTGTGTTTCATTCACATGTTACAAGGATTCGAGAGTGATTATTCATGTATAGCAACATCTCATT
1 TTTGTGTTTCATTCACATGTTACAAGGATTCGAGAGTGATTATTCATGTATAGCAACATCTCATT
24871017 TGGAGATCT
66 TGGAGATCT
24871026 T
1 T
24871027 AGTTGATTGA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.40
Consensus pattern (74 bp):
TTTGTGTTTCATTCACATGTTACAAGGATTCGAGAGTGATTATTCATGTATAGCAACATCTCATT
TGGAGATCT
Found at i:24872372 original size:17 final size:18
Alignment explanation
Indices: 24872344--24872378 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
24872334 GCTAAAAAAA
24872344 TATTTAGATTTAGAGCAT
1 TATTTAGATTTAGAGCAT
24872362 TATTT-GATTTAGAGCAT
1 TATTTAGATTTAGAGCAT
24872379 AAAATCCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.46
Consensus pattern (18 bp):
TATTTAGATTTAGAGCAT
Found at i:24872919 original size:31 final size:29
Alignment explanation
Indices: 24872878--24872979 Score: 105
Period size: 29 Copynumber: 3.4 Consensus size: 29
24872868 AAAGCACATC
*
24872878 AACAGACACTAAACTTTGATTAAAATAACAA
1 AACAGTCACTAAACTTTGA--AAAATAACAA
* *
24872909 AACAGTCACTAAACTTTGAAAACTTACAA
1 AACAGTCACTAAACTTTGAAAAATAACAA
** * *
24872938 CTCAGTCGCTAAACTTTAAGAAAATAACAA
1 AACAGTCACTAAACTTTGA-AAAATAACAA
*
24872968 AATAGTCACTAA
1 AACAGTCACTAA
24872980 CGTTATCTAA
Statistics
Matches: 57, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
29 23 0.40
30 16 0.28
31 18 0.32
ACGTcount: A:0.50, C:0.19, G:0.08, T:0.24
Consensus pattern (29 bp):
AACAGTCACTAAACTTTGAAAAATAACAA
Found at i:24873178 original size:3 final size:3
Alignment explanation
Indices: 24873170--24873202 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
24873160 TACCACCCAA
24873170 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
24873203 CTCTATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:24876167 original size:3 final size:3
Alignment explanation
Indices: 24876155--24876226 Score: 110
Period size: 3 Copynumber: 24.3 Consensus size: 3
24876145 ACTGCTCCAT
* *
24876155 TTC TTC -TC TTC TTC TTC TTC TTC TTC TTC TCC TTC TTT TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
24876202 TTC TTT TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
24876227 ACTGCCCAAC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
2 2 0.03
3 60 0.97
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:24876385 original size:29 final size:29
Alignment explanation
Indices: 24876353--24876440 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 29
24876343 AGTGACCGGT
* *
24876353 TTATTATTTTTTAAAATTTAGTGACTGA-A
1 TTATTATTTTTCAAAATTTAATGACT-ATA
* * *
24876382 TTATAAATTTTCAAAATTTAATGACTATT
1 TTATTATTTTTCAAAATTTAATGACTATA
* *
24876411 TTATTATTTTAATCAAAATTTCATAACTAT
1 TTATTATTTT--TCAAAATTTAATGACTAT
24876441 TGATGTAATT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
28 1 0.02
29 30 0.64
31 16 0.34
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.50
Consensus pattern (29 bp):
TTATTATTTTTCAAAATTTAATGACTATA
Found at i:24877476 original size:16 final size:18
Alignment explanation
Indices: 24877455--24877492 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
24877445 ATACTTTTAG
*
24877455 ATTTTAGTA-TTA-TTTT
1 ATTTTAATAGTTATTTTT
24877471 ATTTTAATAGTTATTTTT
1 ATTTTAATAGTTATTTTT
24877489 ATTT
1 ATTT
24877493 GTTAATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 3 0.16
18 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
ATTTTAATAGTTATTTTT
Found at i:24880490 original size:37 final size:37
Alignment explanation
Indices: 24880449--24880530 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
24880439 TCAGTTGCAC
*
24880449 TAGCTCTTCGGAGCAAT-TGGCATGTTATCAAGTGGAT
1 TAGCTCTTAGGAGC-ATCTGGCATGTTATCAAGTGGAT
* *
24880486 TAGCTCTTATGAGCATCTGGCATGTTATCGAGTGGAT
1 TAGCTCTTAGGAGCATCTGGCATGTTATCAAGTGGAT
24880523 TAGCTCTT
1 TAGCTCTT
24880531 TTGAGAGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
36 2 0.05
37 39 0.95
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (37 bp):
TAGCTCTTAGGAGCATCTGGCATGTTATCAAGTGGAT
Found at i:24880981 original size:11 final size:11
Alignment explanation
Indices: 24880965--24880990 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24880955 GATGAATGTG
24880965 TTGGTTATACT
1 TTGGTTATACT
24880976 TTGGTTATACT
1 TTGGTTATACT
24880987 TTGG
1 TTGG
24880991 AAGTCATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.08, G:0.23, T:0.54
Consensus pattern (11 bp):
TTGGTTATACT
Found at i:24883539 original size:51 final size:50
Alignment explanation
Indices: 24883418--24883652 Score: 240
Period size: 51 Copynumber: 4.7 Consensus size: 50
24883408 AAAGTGATGG
* * *** *
24883418 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGA-ATGAAAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-GTTTGA
* * * * *
24883468 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TTTGA
* * * *
24883519 TCACATATGTAGTACTATGTGCAAGCTACTACGTGTATCGGATA-TTAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTT--TGA
* * *
24883570 TCACATGTGTAGTACTATGTGTAGGCTACTACGTGAACCGGAAAGTTTGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTTGA
* *
24883620 TCACGTGTGTAGTACTATGTGAAGGCTACTACG
1 TCACATGTGTAGTACTATGTGCAGGCTACTACG
24883653 AGTATCGAAT
Statistics
Matches: 152, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
49 2 0.01
50 70 0.46
51 78 0.51
52 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTTGA
Found at i:24883658 original size:101 final size:101
Alignment explanation
Indices: 24883418--24883664 Score: 320
Period size: 101 Copynumber: 2.5 Consensus size: 101
24883408 AAAGTGATGG
* * *
24883418 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGAATGAAAGGTCACATGTGTAGTAC
* * *
24883483 TATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
66 TATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* * * *
24883519 TCACATATGTAGTACTATGTGCAA-GCTACTACGTGTATCGGATATTAATGGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTG-AAGGCTACTACGTGTATCGGA-ATGAAAGGTCACATGTGTAGT
* * * *
24883583 ACTATGTGTAGGCTACTACGTGAACCGGAAAG-TTTGA
64 ACTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
*
24883620 TCACGTGTGTAGTACTATGTGAAGGCTACTACGAGTATC-GAATGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGAATGA
24883665 TAATAGTTAA
Statistics
Matches: 125, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
99 3 0.02
100 4 0.03
101 73 0.58
102 45 0.36
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGAATGAAAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
Found at i:24883686 original size:101 final size:102
Alignment explanation
Indices: 24883418--24883693 Score: 319
Period size: 101 Copynumber: 2.7 Consensus size: 102
24883408 AAAGTGATGG
* * *
24883418 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGA-AA-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGGTCACATGTGTAGT
* * *
24883481 ACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
65 ACTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* * *
24883519 TCACATATGTAGTACTATGTGCAA-GCTACTACGTGTATCGGAT-ATTAATGGTCACATGTGTAG
1 TCACGTGTGTAGTACTATGTG-AAGGCTACTACGTGTATCGAATGA-TAATGGTCACATGTGTAG
* * * *
24883582 TACTATGTGTAGGCTACTACGTGAACCGGAAAG-TTTGA
64 TACTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* * * * * *
24883620 TCACGTGTGTAGTACTATGTGAAGGCTACTACGAGTATCGAATGATAATAGTTAAATGAGTGGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
24883685 CTATGTGCA
66 CTATGTGCA
24883694 AACCACCGAA
Statistics
Matches: 146, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
99 1 0.01
100 5 0.03
101 98 0.67
102 42 0.29
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
Found at i:24883690 original size:152 final size:151
Alignment explanation
Indices: 24883414--24883694 Score: 334
Period size: 152 Copynumber: 1.8 Consensus size: 151
24883404 AGTGAAAGTG
* * * * *
24883414 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAGGTCGCATGTGTA
1 ATGGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGAACCGGAAAGAAAGATCACATGTGTA
* * * * * * *
24883479 GTACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGATCACATATGTAGTACTATGTGCAAG
66 GTACTATGTGAAGGCTACTACGAGTACAAGATA-CATAGATCAAATATGTAGTACTATGTGCAAG
24883544 CTACTACGTGTATCGGATATTA
130 CTACTACGTGTATCGGATATTA
*** *
24883566 ATGGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGAACCGGAAAGTTTGATCACGTGTGTA
1 ATGGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGAACCGGAAAGAAAGATCACATGTGTA
* *
24883631 GTACTATGTGAAGGCTACTACGAGTATCGAATGATA-ATAG-TTAAATGA-GTGGTACTATGTGC
66 GTACTATGTGAAGGCTACTACGAGTA-C-AA-GATACATAGATCAAAT-ATGTAGTACTATGTGC
24883693 AA
127 AA
24883695 ACCACCGAAT
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
152 98 0.92
153 4 0.04
154 1 0.01
155 4 0.04
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (151 bp):
ATGGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGAACCGGAAAGAAAGATCACATGTGTA
GTACTATGTGAAGGCTACTACGAGTACAAGATACATAGATCAAATATGTAGTACTATGTGCAAGC
TACTACGTGTATCGGATATTA
Found at i:24884660 original size:47 final size:48
Alignment explanation
Indices: 24884572--24884664 Score: 116
Period size: 47 Copynumber: 2.0 Consensus size: 48
24884562 CATGGCAACA
* *
24884572 TGTGATATGTGATTTCTGTATAAGACCATATCCGAGATATGGCATCGG
1 TGTGATATGTGATATCTGTATAAGACCATAGCCGAGATATGGCATCGG
* * * * *
24884620 TGTGATATGTGCTAT-TGTGTAAGACCATAGCTGGGCTATGGCATC
1 TGTGATATGTGATATCTGTATAAGACCATAGCCGAGATATGGCATC
24884665 AATATGTAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
47 25 0.66
48 13 0.34
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (48 bp):
TGTGATATGTGATATCTGTATAAGACCATAGCCGAGATATGGCATCGG
Found at i:24889740 original size:17 final size:17
Alignment explanation
Indices: 24889718--24889756 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
24889708 AAAAGTCCGT
*
24889718 CAAATCTTAGAGTTCGC
1 CAAATCCTAGAGTTCGC
*
24889735 CAAATCCTGGAGTTCGC
1 CAAATCCTAGAGTTCGC
24889752 CAAAT
1 CAAAT
24889757 GACGAACCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (17 bp):
CAAATCCTAGAGTTCGC
Found at i:24896767 original size:30 final size:29
Alignment explanation
Indices: 24896731--24896920 Score: 157
Period size: 30 Copynumber: 6.3 Consensus size: 29
24896721 TTCGGCTATC
24896731 AATTATGAAAAGGGATGGTGACGACCATCA
1 AATTATGAAAAGGGATGGT-ACGACCATCA
*
24896761 AATTATGAAAAGGGATGGTGATGACCATCA
1 AATTATGAAAAGGGATGGT-ACGACCATCA
* * **
24896791 AATTATGAAAAGGGATGGCTTCGACTATTG
1 AATTATGAAAAGGGATGG-TACGACCATCA
* * * * * * *
24896821 TACTATGAAAAGGGGTGACTTCGGCTATC-
1 AATTATGAAAAGGGATG-GTACGACCATCA
* * * *
24896850 GATCTATGAAAAGGGATGGCTTCGGCTATCA
1 AAT-TATGAAAAGGGATGG-TACGACCATCA
*
24896881 AATTATGAAAAGGGATGGTGACGACCATTA
1 AATTATGAAAAGGGATGGT-ACGACCATCA
24896911 AATTATGAAA
1 AATTATGAAA
24896921 GAGATAGCTT
Statistics
Matches: 133, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
29 2 0.02
30 128 0.96
31 3 0.02
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.25
Consensus pattern (29 bp):
AATTATGAAAAGGGATGGTACGACCATCA
Found at i:24896807 original size:60 final size:60
Alignment explanation
Indices: 24896731--24896920 Score: 192
Period size: 60 Copynumber: 3.2 Consensus size: 60
24896721 TTCGGCTATC
* *
24896731 AATTATGAAAAGGGATGG-TGACGACCATCAAATTATGAAAAGGGATGGTGATGACCATCA
1 AATTATGAAAAGGGATGGCT-TCGACTATCAAATTATGAAAAGGGATGGTGATGACCATCA
*** * * *
24896791 AATTATGAAAAGGGATGGCTTCGACTATTGTACTATGAAAA-GG--GGTGACTTCGGCTATC-
1 AATTATGAAAAGGGATGGCTTCGACTATCAAATTATGAAAAGGGATGGTGA--T-GACCATCA
* * * *
24896850 GATCTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGATGGTGACGACCATTA
1 AAT-TATGAAAAGGGATGGCTTCGACTATCAAATTATGAAAAGGGATGGTGATGACCATCA
24896911 AATTATGAAA
1 AATTATGAAA
24896921 GAGATAGCTT
Statistics
Matches: 102, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
57 5 0.05
59 5 0.05
60 82 0.80
61 5 0.05
63 5 0.05
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.25
Consensus pattern (60 bp):
AATTATGAAAAGGGATGGCTTCGACTATCAAATTATGAAAAGGGATGGTGATGACCATCA
Found at i:24896957 original size:30 final size:30
Alignment explanation
Indices: 24896793--24896986 Score: 96
Period size: 30 Copynumber: 6.5 Consensus size: 30
24896783 GACCATCAAA
*
24896793 TTATGAAAAGGGATGGCTTC-GACTATTGTA-
1 TTATGAAAAGGGATAGCTTCAG-CTATTG-AG
* * * *
24896823 CTATGAAAAGGGGT-GACTTCGGCTATCGA-
1 TTATGAAAAGGGATAG-CTTCAGCTATTGAG
* * ** *
24896852 TCTATGAAAAGGGATGGCTTCGGCTATCAAA
1 T-TATGAAAAGGGATAGCTTCAGCTATTGAG
* * * * *
24896883 TTATGAAAAGGGAT-G-GTGACGACCATTAAA
1 TTATGAAAAGGGATAGCTTCA-G-CTATTGAG
* *
24896913 TTATG-AAAGAGATAGCTTCAGCTATTGCG
1 TTATGAAAAGGGATAGCTTCAGCTATTGAG
* **
24896942 TTTTGAAAAGGGATAGCTTTGGCTATTGAG
1 TTATGAAAAGGGATAGCTTCAGCTATTGAG
*
24896972 TTATGAAAAAGGATA
1 TTATGAAAAGGGATA
24896987 ACTTTGGTTA
Statistics
Matches: 129, Mismatches: 25, Indels: 20
0.74 0.14 0.11
Matches are distributed among these distances:
28 1 0.01
29 19 0.15
30 104 0.81
31 5 0.04
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (30 bp):
TTATGAAAAGGGATAGCTTCAGCTATTGAG
Found at i:24896992 original size:30 final size:30
Alignment explanation
Indices: 24896933--24897013 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
24896923 GATAGCTTCA
* * * *
24896933 GCTATTGCGTTTTGAAAAGGGATAGCTTTG
1 GCTATTGAGTTATGAAAAAGGATAACTTTG
24896963 GCTATTGAGTTATGAAAAAGGATAACTTTG
1 GCTATTGAGTTATGAAAAAGGATAACTTTG
* * * *
24896993 GTTATCGAATTACGAAAAAGG
1 GCTATTGAGTTATGAAAAAGG
24897014 GATGTGTTAA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.32
Consensus pattern (30 bp):
GCTATTGAGTTATGAAAAAGGATAACTTTG
Found at i:24899406 original size:42 final size:42
Alignment explanation
Indices: 24899273--24899437 Score: 134
Period size: 42 Copynumber: 3.9 Consensus size: 42
24899263 TGTGATTTTG
* * * * **
24899273 TGTAAGACCATGTCTGGGACATTGGAATCGATATGAGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCAT-TATATGTGATAACA
* * ** * **
24899316 TGTAAGACCATGCCTGGGACATTGCCATCGTATATGATTTCA
1 TGTAAGACCATGTCTGGGACATTGGCATTATATGTGATAACA
* * *
24899358 TATAAGACCCTGTCTGGGACAGTGGCATTATATGTGATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATTATATGTGATAACA
* * * *
24899400 TGTAAGACCATATCTAGGATA-TGGCATTGTATGTGATA
1 TGTAAGACCATGTCTGGGACATTGGCATTATATGTGATA
24899438 TATGTGTTTC
Statistics
Matches: 96, Mismatches: 26, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
41 16 0.17
42 55 0.57
43 25 0.26
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATTATATGTGATAACA
Found at i:24899638 original size:44 final size:44
Alignment explanation
Indices: 24899584--24899668 Score: 161
Period size: 44 Copynumber: 1.9 Consensus size: 44
24899574 TGTTGTTTAA
24899584 TGAGACAAAGTGAAATACATGAGAAAAGTGTTTCTATATGTGTT
1 TGAGACAAAGTGAAATACATGAGAAAAGTGTTTCTATATGTGTT
*
24899628 TGAGACAAAGTGAAATACATGAGAAAAGTGTTTCTGTATGT
1 TGAGACAAAGTGAAATACATGAGAAAAGTGTTTCTATATGT
24899669 TTTTATGACT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.31
Consensus pattern (44 bp):
TGAGACAAAGTGAAATACATGAGAAAAGTGTTTCTATATGTGTT
Found at i:24901269 original size:21 final size:21
Alignment explanation
Indices: 24901224--24901263 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
24901214 GTATTTAAGT
*
24901224 TTTTAATGATAGATTATGAAA
1 TTTTAATGATAGATTATCAAA
*
24901245 TTTTAATGTTAGATTATCA
1 TTTTAATGATAGATTATCA
24901264 TGTTTTCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTTAATGATAGATTATCAAA
Found at i:24901840 original size:82 final size:82
Alignment explanation
Indices: 24901735--24902028 Score: 450
Period size: 82 Copynumber: 3.6 Consensus size: 82
24901725 TACGGAATTC
* *
24901735 TAATTGTTTATA--GTTATATATTGTCGAAGTTGAATTGTATATGGATATATTAATTCGTATATG
1 TAATT-TTTATATGGTTATACATTGTTGAAGTTGAATTGTATATGGATATATTAATTCGTATATG
24901798 GTTGAACACTACTGAAAA
65 GTTGAACACTACTGAAAA
24901816 TAATTTTTATATGGTTATACATTGTTGAAGTTGAATTGTATATGGATATATTAATTCGTATATGG
1 TAATTTTTATATGGTTATACATTGTTGAAGTTGAATTGTATATGGATATATTAATTCGTATATGG
* *
24901881 TTGAACACTGCTAAAAA
66 TTGAACACTACTGAAAA
* * * *
24901898 TAATTTTTATATGGCTATACATTGTTGAAGTTGAATTGTATTTGGATATATTAATTCATATATGA
1 TAATTTTTATATGGTTATACATTGTTGAAGTTGAATTGTATATGGATATATTAATTCGTATATGG
*
24901963 TTGAACACTTCTGAAAA
66 TTGAACACTACTGAAAA
* * *
24901980 T-TTTTTTAAATGGTTATACATTGTTGAAATTGAATTGTATATGGATATA
1 TAATTTTTATATGGTTATACATTGTTGAAGTTGAATTGTATATGGATATA
24902029 AGTTGTCGAA
Statistics
Matches: 196, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
80 6 0.03
81 48 0.24
82 142 0.72
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.44
Consensus pattern (82 bp):
TAATTTTTATATGGTTATACATTGTTGAAGTTGAATTGTATATGGATATATTAATTCGTATATGG
TTGAACACTACTGAAAA
Found at i:24902096 original size:61 final size:62
Alignment explanation
Indices: 24901989--24902104 Score: 146
Period size: 61 Copynumber: 1.9 Consensus size: 62
24901979 ATTTTTTTAA
* * *
24901989 ATGGTTATACATTGTTGAAATTGAATTGTATATGGATATAAGTTGTCG-AATTGATTCGTAT
1 ATGGTTATACATTGCTGAAATTAAATTGTACATGGATATAAGTTGTCGAAATTGATTCGTAT
* * * *
24902050 ATGGTTGTACCTTGCTGAAATTAAATTTTACATGGTTATACA-TTGTCGAAATTGA
1 ATGGTTATACATTGCTGAAATTAAATTGTACATGGATATA-AGTTGTCGAAATTGA
24902105 ATTTTTTATC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
61 39 0.85
62 7 0.15
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (62 bp):
ATGGTTATACATTGCTGAAATTAAATTGTACATGGATATAAGTTGTCGAAATTGATTCGTAT
Found at i:24902101 original size:31 final size:31
Alignment explanation
Indices: 24901983--24902109 Score: 118
Period size: 31 Copynumber: 4.1 Consensus size: 31
24901973 CTGAAAATTT
* *
24901983 TTTTAAATGGTTATACATTGTTGAAATTGAA
1 TTTTATATGGTTATACATTGTCGAAATTGAA
* *
24902014 TTGTATATGGATATA-AGTTGTCG-AATTG-A
1 TTTTATATGGTTATACA-TTGTCGAAATTGAA
* * * *
24902043 TTCGTATATGGTTGTACCTTG-CTGAAATTAAA
1 TT-TTATATGGTTATACATTGTC-GAAATTGAA
*
24902075 TTTTACATGGTTATACATTGTCGAAATTGAA
1 TTTTATATGGTTATACATTGTCGAAATTGAA
24902106 TTTT
1 TTTT
24902110 TTATCAATAT
Statistics
Matches: 76, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
29 4 0.05
30 21 0.28
31 47 0.62
32 4 0.05
ACGTcount: A:0.31, C:0.07, G:0.18, T:0.44
Consensus pattern (31 bp):
TTTTATATGGTTATACATTGTCGAAATTGAA
Found at i:24902739 original size:15 final size:15
Alignment explanation
Indices: 24902719--24902747 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
24902709 TGTGATATGT
24902719 TTGAATTCAATTTAG
1 TTGAATTCAATTTAG
24902734 TTGAATTCAATTTA
1 TTGAATTCAATTTA
24902748 TAATTTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.48
Consensus pattern (15 bp):
TTGAATTCAATTTAG
Found at i:24907330 original size:50 final size:50
Alignment explanation
Indices: 24907220--24907468 Score: 216
Period size: 50 Copynumber: 4.9 Consensus size: 50
24907210 ACATTTGGGT
* *
24907220 GATGAGA--TCCCATGTAAGACCATCTCTGGCACATGGCATTGGCATCATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGA
*
24907271 GATTATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGA
** * * **
24907324 GATGAGAGGTCCCCCGTAAGACCATGTCTTGGACATGGCATGGGCACCAA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGA
* ** * * * * *
24907374 TATGAGAACTCCCATGTAAGTCCGTATCTGGGATATGGCATTGGCAGT-A
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGA
* * * ** *
24907423 CAGGAAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
24907469 TGTTATTATC
Statistics
Matches: 160, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
49 37 0.23
50 77 0.48
51 1 0.01
53 4 0.03
54 6 0.04
55 1 0.01
56 34 0.21
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGA
Found at i:24911950 original size:83 final size:82
Alignment explanation
Indices: 24911850--24912133 Score: 496
Period size: 82 Copynumber: 3.5 Consensus size: 82
24911840 ATTGTTTATA
* * *
24911850 GTTATATATTGTCGAAGTTGAATTGTATATGGATATATTAATTCGTATATGGTTGAACACTACTG
1 GTTATACATTGTTGAAGTTGAATTGTATATGGATATATTAATTCGTATATGGTTGAACACTGCTG
24911915 AAAATAATTTTTATATG
66 AAAATAATTTTTATATG
*
24911932 GTTTATACATTGTTGAAGTTGAATTGTATATGGATATATTAATTCTTATATGGTTGAACACTGCT
1 G-TTATACATTGTTGAAGTTGAATTGTATATGGATATATTAATTCGTATATGGTTGAACACTGCT
24911997 GAAAATAATTTTTATATG
65 GAAAATAATTTTTATATG
* *
24912015 GTTATACATTGTTGAAGTTGAATTGTATATGGATATAATAATTCGTATATGATTGAACACTGCTG
1 GTTATACATTGTTGAAGTTGAATTGTATATGGATATATTAATTCGTATATGGTTGAACACTGCTG
24912080 AAAATAATTTTTATATG
66 AAAATAATTTTTATATG
*
24912097 GTTATACATTGTTGAAATTGAATTGTATATGGATATA
1 GTTATACATTGTTGAAGTTGAATTGTATATGGATATA
24912134 AGTTGCCGAA
Statistics
Matches: 193, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
82 115 0.60
83 78 0.40
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.43
Consensus pattern (82 bp):
GTTATACATTGTTGAAGTTGAATTGTATATGGATATATTAATTCGTATATGGTTGAACACTGCTG
AAAATAATTTTTATATG
Found at i:24912126 original size:31 final size:31
Alignment explanation
Indices: 24912091--24912292 Score: 125
Period size: 31 Copynumber: 6.5 Consensus size: 31
24912081 AAATAATTTT
*
24912091 TATATGGTTATACATTGTTGAAATTGAATTG
1 TATATGGTTATACATTGTCGAAATTGAATTG
* *
24912122 TATATGGATATA-AGTTGCCG-AATTG-ATTCG
1 TATATGGTTATACA-TTGTCGAAATTGAATT-G
* * * *
24912152 CATATGGTTGTACCTTG-CTGATATT-AATTTG
1 TATATGGTTATACATTGTC-GAAATTGAA-TTG
*
24912183 TACATGGTTATACATTGTCGAAATTGAATTG
1 TATATGGTTATACATTGTCGAAATTGAATTG
* ** * * *
24912214 TTTATGAATATAGGA-TGTCGAATTTGATTTG
1 TATATGGTTATA-CATTGTCGAAATTGAATTG
* *
24912245 TATATGTTTAT-CTATTG-CCAAACTTG-ATTCG
1 TATATGGTTATAC-ATTGTCGAAA-TTGAATT-G
24912276 TATATGGTTATACATTG
1 TATATGGTTATACATTG
24912293 CCTAATTGCT
Statistics
Matches: 128, Mismatches: 28, Indels: 30
0.69 0.15 0.16
Matches are distributed among these distances:
29 4 0.03
30 26 0.20
31 91 0.71
32 7 0.05
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.43
Consensus pattern (31 bp):
TATATGGTTATACATTGTCGAAATTGAATTG
Found at i:24920573 original size:42 final size:43
Alignment explanation
Indices: 24920526--24920634 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 43
24920516 TCTCGAGGTG
* * * *
24920526 TGATTTCGTGTAAGACCATGTTTGAGACATTGGCATC-ATATA
1 TGATTTCATGTAAGACCATGTCTGAGACAGTCGCATCGATATA
* * * *
24920568 TGATTTCATATAAGACCCTGTCTGGGACAGTCGCATCGATATG
1 TGATTTCATGTAAGACCATGTCTGAGACAGTCGCATCGATATA
** *
24920611 TGATAACATGTAAGACCATATCTG
1 TGATTTCATGTAAGACCATGTCTG
24920635 GGATATGGCA
Statistics
Matches: 53, Mismatches: 13, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
42 30 0.57
43 23 0.43
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTGAGACAGTCGCATCGATATA
Found at i:24920626 original size:43 final size:42
Alignment explanation
Indices: 24920534--24920637 Score: 109
Period size: 43 Copynumber: 2.5 Consensus size: 42
24920524 TGTGATTTCG
* * * * **
24920534 TGTAAGACCATGTTTGAGACATTGGCATCATATATGATTTCA
1 TGTAAGACCATGTCTGGGACAGTCGCATCATATATGATAACA
* * *
24920576 TATAAGACCCTGTCTGGGACAGTCGCATCGATATGTGATAACA
1 TGTAAGACCATGTCTGGGACAGTCGCATC-ATATATGATAACA
*
24920619 TGTAAGACCATATCTGGGA
1 TGTAAGACCATGTCTGGGA
24920638 TATGGCATTG
Statistics
Matches: 49, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
42 23 0.47
43 26 0.53
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAGTCGCATCATATATGATAACA
Found at i:24921225 original size:22 final size:22
Alignment explanation
Indices: 24921159--24921227 Score: 111
Period size: 22 Copynumber: 3.1 Consensus size: 22
24921149 TGGAAGTTAC
24921159 TTTAACGTACTAAGCTCTCATG
1 TTTAACGTACTAAGCTCTCATG
**
24921181 GCTAACGTACTAAGCTCTCATG
1 TTTAACGTACTAAGCTCTCATG
*
24921203 TTTCACGTACTAAGCTCTCATG
1 TTTAACGTACTAAGCTCTCATG
24921225 TTT
1 TTT
24921228 GAACAATAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (22 bp):
TTTAACGTACTAAGCTCTCATG
Found at i:24922667 original size:25 final size:26
Alignment explanation
Indices: 24922630--24922688 Score: 102
Period size: 25 Copynumber: 2.3 Consensus size: 26
24922620 TCTCACCTCG
*
24922630 TTGCCCCCTTACCATACCATTCCATC
1 TTGCCCCCTTACCATACCATTCCAAC
24922656 TT-CCCCCTTACCATACCATTCCAAC
1 TTGCCCCCTTACCATACCATTCCAAC
24922681 TTGCCCCC
1 TTGCCCCC
24922689 CACCTCAGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 24 0.77
26 7 0.23
ACGTcount: A:0.19, C:0.49, G:0.03, T:0.29
Consensus pattern (26 bp):
TTGCCCCCTTACCATACCATTCCAAC
Found at i:24922992 original size:8 final size:8
Alignment explanation
Indices: 24922977--24923041 Score: 58
Period size: 8 Copynumber: 7.8 Consensus size: 8
24922967 TAATTCTTTC
24922977 TTATTTTA
1 TTATTTTA
*
24922985 TCATTTTA
1 TTATTTTA
24922993 TTATTTTA
1 TTATTTTA
*
24923001 TTATTTTCC
1 TTATTTT-A
*
24923010 TTAATTTA
1 TTATTTTA
24923018 TTTATTTTA
1 -TTATTTTA
* *
24923027 CTATTCTAA
1 TTATT-TTA
24923036 TTATTT
1 TTATTT
24923042 CATTTATTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
8 26 0.58
9 19 0.42
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.68
Consensus pattern (8 bp):
TTATTTTA
Found at i:24923290 original size:21 final size:23
Alignment explanation
Indices: 24923242--24923292 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
24923232 CATTATCAAT
*
24923242 TTATTATTATTCTTGTCTTAATTT
1 TTATT-TTATTCTTGTCTTAATTA
*
24923266 TTATTTTATTCTTG-C-TACTTA
1 TTATTTTATTCTTGTCTTAATTA
24923287 TTATTT
1 TTATTT
24923293 GTTTCCATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 10 0.40
22 1 0.04
23 9 0.36
24 5 0.20
ACGTcount: A:0.20, C:0.10, G:0.04, T:0.67
Consensus pattern (23 bp):
TTATTTTATTCTTGTCTTAATTA
Found at i:24924697 original size:6 final size:6
Alignment explanation
Indices: 24924688--24924733 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
24924678 AGTTTTATTT
*
24924688 ATTTTA ATTTTA ATTTTA ATTTTT ATGTTT- ATTTTA ATTTT- ATTTT
1 ATTTTA ATTTTA ATTTTA ATTTTA AT-TTTA ATTTTA ATTTTA ATTTT
24924734 CAGTTGTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
5 8 0.22
6 26 0.70
7 3 0.08
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (6 bp):
ATTTTA
Found at i:24924705 original size:12 final size:11
Alignment explanation
Indices: 24924674--24924733 Score: 61
Period size: 12 Copynumber: 5.4 Consensus size: 11
24924664 CTTGTTTTCT
*
24924674 TTTTAGTTTTA
1 TTTTAATTTTA
24924685 -TTT-ATTTTAA
1 TTTTAATTTT-A
24924695 TTTTAATTTTAA
1 TTTTAATTTT-A
*
24924707 TTTTTATGTTTA
1 TTTTAAT-TTTA
24924719 TTTTAATTTTA
1 TTTTAATTTTA
24924730 TTTT
1 TTTT
24924734 CAGTTGTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
9 4 0.10
10 4 0.10
11 11 0.26
12 20 0.48
13 3 0.07
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (11 bp):
TTTTAATTTTA
Found at i:24924721 original size:24 final size:23
Alignment explanation
Indices: 24924686--24924733 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 23
24924676 TTAGTTTTAT
24924686 TTATTTTAATTTTAATTTTAATTT
1 TTATTTTAATTTTAATTTT-ATTT
24924710 TTATGTTT-ATTTTAATTTTATTT
1 TTAT-TTTAATTTTAATTTTATTT
24924733 T
1 T
24924734 CAGTTGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.22
24 15 0.65
25 3 0.13
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (23 bp):
TTATTTTAATTTTAATTTTATTT
Found at i:24924754 original size:5 final size:6
Alignment explanation
Indices: 24924668--24924754 Score: 54
Period size: 6 Copynumber: 14.5 Consensus size: 6
24924658 AGTTTACTTG
* * * * *
24924668 TTTTCT TTTTAG TTTTA- -TTTAT TTTAAT TTTAAT TTTAAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* * *
24924714 GTTTA- TTTTAA TTTTAT TTTCAGTT GTTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTA--T -TTTTAT TTTTAT TTT
24924755 CCTAGACTTA
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
4 4 0.06
5 4 0.06
6 52 0.79
7 1 0.02
8 1 0.02
9 4 0.06
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.74
Consensus pattern (6 bp):
TTTTAT
Found at i:24926507 original size:25 final size:25
Alignment explanation
Indices: 24926452--24926518 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
24926442 ACTGATTTAT
* * *
24926452 AGCTCGTGAGAGCATACCGATCTAC
1 AGCTCGAGTGAGCATACCAATCTAC
*
24926477 AACTCGAGTGAGCATACCAAT-TCAC
1 AGCTCGAGTGAGCATACCAATCT-AC
24926502 AGCTCGTA-TGAGCATAC
1 AGCTCG-AGTGAGCATAC
24926519 ATGTACATGA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.03
25 33 0.94
26 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (25 bp):
AGCTCGAGTGAGCATACCAATCTAC
Found at i:24928952 original size:7 final size:7
Alignment explanation
Indices: 24928940--24928966 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
24928930 AATCTTAGTA
24928940 TAACATT
1 TAACATT
24928947 TAACATT
1 TAACATT
24928954 TAACATT
1 TAACATT
24928961 TAACAT
1 TAACAT
24928967 GTTATGTAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (7 bp):
TAACATT
Found at i:24931718 original size:21 final size:21
Alignment explanation
Indices: 24931694--24931746 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
24931684 CATTGTTTCT
*
24931694 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
* *
24931715 AATCTCATCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
24931736 AATCTCACCGC
1 AATCTCACCGC
24931747 CACCACTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:24932908 original size:30 final size:30
Alignment explanation
Indices: 24932872--24932955 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
24932862 GTGTCTCAGT
*
24932872 CGTGTGTGACACACTGCCAGGTGACATGGC
1 CGTGTGTGACACACTGCCAGGTGACATGGA
*
24932902 CGTGTGTAACACACTGCCAGGTGACATGGA
1 CGTGTGTGACACACTGCCAGGTGACATGGA
*
24932932 CGTGTGTGACACACGGCCAGGTGA
1 CGTGTGTGACACACTGCCAGGTGA
24932956 TCCCTTGAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.23, C:0.25, G:0.33, T:0.19
Consensus pattern (30 bp):
CGTGTGTGACACACTGCCAGGTGACATGGA
Found at i:24936052 original size:9 final size:9
Alignment explanation
Indices: 24936034--24936065 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
24936024 ATGAGAAATT
24936034 AAAAGTGAG
1 AAAAGTGAG
*
24936043 AAAGGTGAG
1 AAAAGTGAG
24936052 AAAAGTGAG
1 AAAAGTGAG
24936061 AAAAG
1 AAAAG
24936066 ATTGGCAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.34, T:0.09
Consensus pattern (9 bp):
AAAAGTGAG
Found at i:24942146 original size:28 final size:29
Alignment explanation
Indices: 24942115--24942175 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
24942105 GAGCCCTATT
* * *
24942115 CAATAACAGT-ACAGTGTGGGCCTTAGCC
1 CAATAACAGTAACAATATGGACCTTAGCC
24942143 CAAT-ACAGTAACAATATGGACCTTAGCC
1 CAATAACAGTAACAATATGGACCTTAGCC
*
24942171 TAATA
1 CAATA
24942176 CAATATTAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (29 bp):
CAATAACAGTAACAATATGGACCTTAGCC
Found at i:24942351 original size:26 final size:26
Alignment explanation
Indices: 24942286--24942354 Score: 104
Period size: 25 Copynumber: 2.7 Consensus size: 26
24942276 CCAATACACC
*
24942286 AATATCACAGCAAAGCTGGCAGTAAT
1 AATATCGCAGCAAAGCTGGCAGTAAT
*
24942312 AGT-TCGCAGCAAAGCTGGCAGTAAT
1 AATATCGCAGCAAAGCTGGCAGTAAT
*
24942337 AATATCGCAACAAAGCTG
1 AATATCGCAGCAAAGCTG
24942355 CCACTAACAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 23 0.61
26 15 0.39
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (26 bp):
AATATCGCAGCAAAGCTGGCAGTAAT
Found at i:24946503 original size:20 final size:19
Alignment explanation
Indices: 24946478--24946515 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
24946468 TAAGATAAGT
*
24946478 ATTATTAAATTTAATATTAA
1 ATTATTAAA-ATAATATTAA
24946498 ATTATTAAAATAATATTA
1 ATTATTAAAATAATATTA
24946516 TTTTTGGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTATTAAAATAATATTAA
Found at i:24955461 original size:119 final size:117
Alignment explanation
Indices: 24955307--24955544 Score: 325
Period size: 119 Copynumber: 2.0 Consensus size: 117
24955297 AATGACTGTG
* ** *
24955307 AGAAATTGCTCGTTTGAGAACTAGCAACATGTGGCCATGTTCCATATTTATCAATCCACACAATG
1 AGAAATTGCTCGTTCGAGAACTAGCAACACATGGCCATGTTCCATATTTATCAATCCACACAAAG
* ** *
24955372 CCAATAAGAGGATATCATTAACTTTTTAATTGAGTTATGAATTCTACTATTGCT
66 CCAATAAGAGGATATCATTAACTCTTT-A-TGACCTATGAATTCCACTATTGCT
*
24955426 AGAAATTGCTCGTTCGAGAA-TGAGCAACCCATGGCCATGTTCCATATTTATCAATCCACACAAA
1 AGAAATTGCTCGTTCGAGAACT-AGCAACACATGGCCATGTTCCATATTTATCAATCCACACAAA
* * * *
24955490 GCTAATGAGAGGATATCGTTAACTCTTTATGACCTATGAATTCCAGTATTGCT
65 GCCAATAAGAGGATATCATTAACTCTTTATGACCTATGAATTCCACTATTGCT
24955543 AG
1 AG
24955545 TAAAGCCATG
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
117 22 0.21
118 2 0.02
119 81 0.77
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (117 bp):
AGAAATTGCTCGTTCGAGAACTAGCAACACATGGCCATGTTCCATATTTATCAATCCACACAAAG
CCAATAAGAGGATATCATTAACTCTTTATGACCTATGAATTCCACTATTGCT
Found at i:24955734 original size:22 final size:23
Alignment explanation
Indices: 24955706--24955761 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
24955696 TGTCACAAGT
*
24955706 GAATTAATTCA-AAAAAAATTTA
1 GAATTAATTCACAAAAAAATTCA
* *
24955728 GAATTAATTCACAAACAGATTCA
1 GAATTAATTCACAAAAAAATTCA
*
24955751 AAATTAATTCA
1 GAATTAATTCA
24955762 TCTTGGGTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.54, C:0.11, G:0.05, T:0.30
Consensus pattern (23 bp):
GAATTAATTCACAAAAAAATTCA
Found at i:24957227 original size:6 final size:6
Alignment explanation
Indices: 24957211--24957261 Score: 57
Period size: 6 Copynumber: 8.3 Consensus size: 6
24957201 TGGTTTTCTC
* * * *
24957211 AAAATG GAAATG AAAATG AAAATG ACAATG ACAATG AGAATG AGAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG A-AAATG
24957260 AA
1 AA
24957262 TTCATTAGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
6 34 0.87
7 5 0.13
ACGTcount: A:0.59, C:0.04, G:0.22, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:24962936 original size:27 final size:27
Alignment explanation
Indices: 24962883--24962936 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
24962873 CCTTAAAAAA
* *
24962883 AATTTGATATTTATGAAAAATATATAT
1 AATTTGAAATTTAGGAAAAATATATAT
*
24962910 AATTTGAAATTTAAGGAATAATA-ATAT
1 AATTTGAAATTT-AGGAAAAATATATAT
24962937 TTTCAAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (27 bp):
AATTTGAAATTTAGGAAAAATATATAT
Found at i:24964634 original size:29 final size:29
Alignment explanation
Indices: 24964600--24964655 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
24964590 CCTTTAATTC
24964600 GATAAGTAAACCTTGCCCGTTTTTAGTTT
1 GATAAGTAAACCTTGCCCGTTTTTAGTTT
24964629 GATAAGTAAACCTTGCCCGTTTTTAGT
1 GATAAGTAAACCTTGCCCGTTTTTAGT
24964656 AATTTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (29 bp):
GATAAGTAAACCTTGCCCGTTTTTAGTTT
Found at i:24964852 original size:100 final size:100
Alignment explanation
Indices: 24964744--24964941 Score: 378
Period size: 100 Copynumber: 2.0 Consensus size: 100
24964734 GATAATATTA
*
24964744 AGTTTGAGTTATTCTTGAAGTTTTATGGAATAATATTAAGGTTGGTTGTTAGTTAGGACTATTTT
1 AGTTTGAGTTATTCTTAAAGTTTTATGGAATAATATTAAGGTTGGTTGTTAGTTAGGACTATTTT
*
24964809 GTAAAGTAGTTTTTGCTGGTTTTAACGTTTAAGTG
66 GTAAAGTAGTTTTTGATGGTTTTAACGTTTAAGTG
24964844 AGTTTGAGTTATTCTTAAAGTTTTATGGAATAATATTAAGGTTGGTTGTTAGTTAGGACTATTTT
1 AGTTTGAGTTATTCTTAAAGTTTTATGGAATAATATTAAGGTTGGTTGTTAGTTAGGACTATTTT
24964909 GTAAAGTAGTTTTTGATGGTTTTAACGTTTAAG
66 GTAAAGTAGTTTTTGATGGTTTTAACGTTTAAG
24964942 GACTAAAATG
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 96 1.00
ACGTcount: A:0.26, C:0.04, G:0.23, T:0.47
Consensus pattern (100 bp):
AGTTTGAGTTATTCTTAAAGTTTTATGGAATAATATTAAGGTTGGTTGTTAGTTAGGACTATTTT
GTAAAGTAGTTTTTGATGGTTTTAACGTTTAAGTG
Found at i:24975676 original size:25 final size:21
Alignment explanation
Indices: 24975624--24975687 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 21
24975614 TTGCAATTTA
24975624 TTTAT-TTATTTATTTTAAAC
1 TTTATATTATTTATTTTAAAC
*
24975644 TTTATATTATTTATTTTAAAT
1 TTTATATTATTTATTTTAAAC
24975665 TGTTCAAGTATTATTTATTTTAA
1 T-TT--A-TATTATTTATTTTAA
24975688 GTTTTTTATA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
20 5 0.13
21 15 0.39
22 2 0.05
24 1 0.03
25 15 0.39
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTATATTATTTATTTTAAAC
Found at i:24975772 original size:55 final size:56
Alignment explanation
Indices: 24975646--24975775 Score: 151
Period size: 55 Copynumber: 2.4 Consensus size: 56
24975636 TTTTAAACTT
* * * *
24975646 TATATTATTTATTTTAAA-T-TGTTCAAGTATTATTTATTTTAAGTTTTTTATATA
1 TATATTATTTATTTTAAACTATGTTCAACTATTATTCATTTTAAGATTTATATATA
** *
24975700 TATATTATGCATTTTAAACTATGTT-AATCTATTATTCATTTTAA-ATTTATATATG
1 TATATTATTTATTTTAAACTATGTTCAA-CTATTATTCATTTTAAGATTTATATATA
*
24975755 TATATTATTTATGTTAAACTA
1 TATATTATTTATTTTAAACTA
24975776 CATATGTATA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
54 16 0.25
55 29 0.46
56 18 0.29
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (56 bp):
TATATTATTTATTTTAAACTATGTTCAACTATTATTCATTTTAAGATTTATATATA
Found at i:24975929 original size:20 final size:21
Alignment explanation
Indices: 24975884--24975929 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
24975874 TTTTGACATA
24975884 TTAT-TTATTTTAAACTTTTT
1 TTATATTATTTTAAACTTTTT
**
24975904 ACATATTATTTTAAA-TTTTT
1 TTATATTATTTTAAACTTTTT
24975924 TTATAT
1 TTATAT
24975930 GTTATTTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATATTATTTTAAACTTTTT
Found at i:24975943 original size:27 final size:26
Alignment explanation
Indices: 24975881--24976012 Score: 89
Period size: 27 Copynumber: 5.2 Consensus size: 26
24975871 TCCTTTTGAC
* * *
24975881 ATATTATTTATTTTAAA-CTTTTTAC
1 ATATTATTTGTTTTAAATTTTTTTAT
24975906 ATATTA----TTTTAAATTTTTTTAT
1 ATATTATTTGTTTTAAATTTTTTTAT
* * *
24975928 ATGTTATTTGTTTTTAAATTGCTTTGA-
1 ATATTATTTG-TTTTAAATT-TTTTTAT
** *
24975955 ATATTATTCATTTT-AATTTGTTTTAC
1 ATATTATTTGTTTTAAATTT-TTTTAT
*
24975981 ATATTATTTGTTTTAAATTGTTTTAT
1 ATATTATTTGTTTTAAATTTTTTTAT
24976007 ACTATT
1 A-TATT
24976013 TACTCCAAAT
Statistics
Matches: 82, Mismatches: 14, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
21 7 0.09
22 11 0.13
25 14 0.17
26 22 0.27
27 24 0.29
28 4 0.05
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (26 bp):
ATATTATTTGTTTTAAATTTTTTTAT
Found at i:24979763 original size:17 final size:17
Alignment explanation
Indices: 24979741--24979777 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
24979731 TAATTCACTT
*
24979741 GAAAAAAGAAATGAAAA
1 GAAAAAAGAAAAGAAAA
24979758 GAAAAAAGAAAAGAAAA
1 GAAAAAAGAAAAGAAAA
24979775 GAA
1 GAA
24979778 GGAAAAGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (17 bp):
GAAAAAAGAAAAGAAAA
Found at i:24979768 original size:12 final size:14
Alignment explanation
Indices: 24979753--24979784 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
24979743 AAAAAGAAAT
24979753 GAAAAGAAAA-AA-
1 GAAAAGAAAAGAAG
24979765 GAAAAGAAAAGAAG
1 GAAAAGAAAAGAAG
24979779 GAAAAG
1 GAAAAG
24979785 GAAATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 10 0.56
13 2 0.11
14 6 0.33
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (14 bp):
GAAAAGAAAAGAAG
Found at i:24980736 original size:50 final size:49
Alignment explanation
Indices: 24980682--24980862 Score: 173
Period size: 50 Copynumber: 3.6 Consensus size: 49
24980672 AATTAAAAAT
* *
24980682 ATTGAAGCCACAATGGTGAATTTTACTTCCCTGGCGGTGTAGTGGGACAG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGT-GGACAG
* * * ** * * ** *
24980732 ATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTG-TAGTGGACAG
*
24980782 ATTGAAGCCACAACGGTGAATCTTACTTTCCTGGCGGTGTAGTGGAGCAG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGA-CAG
* * * * *
24980832 ATTAAAGCTACGACGGCGAATCTTGCTTCCC
1 ATTGAAGCCACAACGGTGAATCTTACTTCCC
24980863 CCGACATTGC
Statistics
Matches: 100, Mismatches: 29, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
49 3 0.03
50 95 0.95
51 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (49 bp):
ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGACAG
Found at i:24980855 original size:100 final size:101
Alignment explanation
Indices: 24980672--24980892 Score: 329
Period size: 100 Copynumber: 2.2 Consensus size: 101
24980662 CTGAGATTAT
* * * *
24980672 AATTAAAAATATTGAAGCCACAATGGTGAATTTTACTTCCCTGGCGGTGTAGTGGGACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGGACAGATTAA
*
24980737 AGCCACAACGGTGAATCTTGCTT-CCCCGACATTGC
66 AGCCACAACGGCGAATCTTGCTTCCCCCGACATTGC
* *
24980772 AATTTAAAAGATTGAAGCCACAACGGTGAATCTTACTTTCCTGGCGGTGTAGT-GGAGCAGATTA
1 AATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGGA-CAGATTA
* *
24980836 AAGCTACGACGGCGAATCTTGCTTCCCCCGACATTGC
65 AAGCCACAACGGCGAATCTTGCTTCCCCCGACATTGC
*
24980873 AATTGAAAAGATTGAAGCCA
1 AATTAAAAAGATTGAAGCCA
24980893 TACATTACAG
Statistics
Matches: 109, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
99 3 0.03
100 75 0.69
101 31 0.28
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (101 bp):
AATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGGACAGATTAA
AGCCACAACGGCGAATCTTGCTTCCCCCGACATTGC
Found at i:24981040 original size:44 final size:43
Alignment explanation
Indices: 24980903--24982012 Score: 516
Period size: 44 Copynumber: 25.6 Consensus size: 43
24980893 TACATTACAG
* * * * * *
24980903 ATCTTATCTCTCTGAAGTTGCAGTAGAGCATA-TCACATC-CA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* * * **
24980944 GTCTTATATCCCTGAAGTTGCAGTGGAGCAGA-CAAAAGAAACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CCA-CA
* * *
24980988 ACCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* * * *** *
24981031 GATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-TCGCATCA-A
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* ** * * * *
24981073 GTCTTATCTCCCT-AAGCAGTAGTGGAGTAGACTGAAGAA-AACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AACCA-CA
* * *
24981117 ACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGAAAC-CA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-AACCACA
* * *
24981161 AT-TCTATCTCCTTGAAGTTACAGTGGAGCGGATTAAAACCACAA
1 ATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAC-A
* * * * *** *
24981205 ATCTTATCTCTCTAAAGTTGCAGTAGAGCA-AATCGCATC-CA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* * * * **
24981246 GTCTTATCTCCTTAAAGTTGCAGTGGAGCAGA-CAAAAGAAACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CCA-CA
*
24981290 ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* ** * * * *
24981333 TATATTATCTTTCTGAAGTTGCAGTAGAGCAGA-TCACATC-CA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* * * * * **
24981375 GTTTTATCTCTCTGAAGTTACAGTGGAGCAGA-CAAAAGAAACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CCA-CA
* *
24981419 ATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* *** *
24981462 GATCTTATCT-CCTGAAGTTGCAGTAGAGCAGA-TCGCATC-CA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* * * ** *
24981503 GTCTTAT-TCCCTGAAGTTACAGTGGAACAGACGAAAGA-AATCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-ACCA-CA
* * *
24981546 AT-TCTATCTCCCTAAAGTTGCAGTGAAGCAGATGAAAACCACA
1 ATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* * *
24981589 GATCTTATCTCTCTGAAGTTGCAGTGAAGCGGATTAAAACCACAA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAC-A
* * ** ***
24981634 ATCTTATCTCTCTGAAGTTGCAGTAGAAAAGATCGCAA-C-CA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* * * * * ** *
24981675 ATATTATATCCCTAAAGTTACAGTGGAACA-AACAGAAGA-AATCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTA-AA-ACCA-CA
* * * * *
24981719 ATCCTATCTACCTGAAGTTACAGTGGAGCGGATTAAAAACACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* ** * **
24981762 GATCTTATCTCTCTGAAGTTGTGGTAGAGCAGATTGCAA-CA-A
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* * * * * *
24981804 ATCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGCTATTA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCA-CA
* * * *
24981848 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACGATAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCA-CA
* * * *
24981892 ATCTTATAC-CTCTGAAGTTGCAGTAGG-TCGGATTAAATTTACCATAATA
1 ATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATTAAA---ACC---ACA
* * * *
24981941 AGTCTTATCTCCTTGAATTTACAGTGGAGCAGACTAAAACCACAA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAC-A
* *
24981986 ATCTTGT-TCTCCTGAAGTTGCGGTGGA
1 ATCTTATCTC-CCTGAAGTTGCAGTGGA
24982013 ATGGATCAAA
Statistics
Matches: 797, Mismatches: 210, Indels: 121
0.71 0.19 0.11
Matches are distributed among these distances:
39 1 0.00
40 41 0.05
41 154 0.19
42 18 0.02
43 59 0.07
44 449 0.56
45 40 0.05
47 5 0.01
49 5 0.01
50 25 0.03
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
Found at i:24981179 original size:129 final size:129
Alignment explanation
Indices: 24980899--24981147 Score: 365
Period size: 129 Copynumber: 1.9 Consensus size: 129
24980889 GCCATACATT
* * **
24980899 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCATATCACATCCAGTCTTATATCCCTGAAGTTG
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATATCCCTGAAGCAG
24980964 CAGTGGAGCAGACAAAAGAAACCAACCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACC
66 CAGTGGAGCAGACAAAAGAAACCAACCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACC
* * *
24981028 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCT-AAGCAG
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATATCCCTGAAGCAG
* * ** * *
24981092 TAGTGGAGTAGACTGAAGAAAACCAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
66 CAGTGGAGCAGACAAAAG-AAACCAACCCTATCTCCCTGAAGTTACAGTGGAGCAG
24981148 GTTGAAGAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
128 18 0.17
129 88 0.83
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (129 bp):
ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATATCCCTGAAGCAG
CAGTGGAGCAGACAAAAGAAACCAACCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACC
Found at i:24981242 original size:173 final size:173
Alignment explanation
Indices: 24980946--24981318 Score: 532
Period size: 173 Copynumber: 2.2 Consensus size: 173
24980936 CACATCCAGT
*
24980946 CTTATATCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAACCCTATCTCCCTGAAGTTACAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAACCCTATCTCCCTGAAGTTACAG
* * * *
24981011 TGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAAGTC
66 TGGAGCAGATTAAAACCACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAAATCGCATCAAGTC
* * **
24981076 TTATCTCCCT-AAGCAGTAGTGGAGTAGACTGAAGAAAACCAAC
131 TTATCTCCCTAAAGCAGCAGTGGAGCAGACAAAAG-AAACCAAC
**** ** *
24981119 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGAAACCAATTCTATCTCCTTGAAGTTACAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAACCCTATCTCCCTGAAGTTACAG
* *
24981184 TGGAGCGGATTAAAACCACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAAATCGCATCCAGTC
66 TGGAGCAGATTAAAACCACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAAATCGCATCAAGTC
* ** *
24981249 TTATCTCCTTAAAGTTGCAGTGGAGCAGACAAAAGAAACCAAT
131 TTATCTCCCTAAAGCAGCAGTGGAGCAGACAAAAGAAACCAAC
24981292 CTTATCTCCCTGAAGTTGCAGTGGAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGC
24981319 GGATTAAAAC
Statistics
Matches: 177, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
173 159 0.90
174 18 0.10
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (173 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAACCCTATCTCCCTGAAGTTACAG
TGGAGCAGATTAAAACCACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAAATCGCATCAAGTC
TTATCTCCCTAAAGCAGCAGTGGAGCAGACAAAAGAAACCAAC
Found at i:24981252 original size:129 final size:129
Alignment explanation
Indices: 24981119--24981613 Score: 701
Period size: 129 Copynumber: 3.9 Consensus size: 129
24981109 GAAAACCAAC
* **** * *
24981119 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGAAACCAAT-TCTATCTCCTTGAAGTTACA
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGACAAAAGAAACCAATCT-TATCTCCCTGAAGTTGCA
* * *
24981183 GTGGAGCGGATTAAAACCACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAAATCGCATCCAGT
65 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGT
* * *
24981248 CTTATCTCCTTAAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGACAAAAGAAACCAATCTTATCTCCCTGAAGTTGCAG
* * * *
24981313 TGGAGCGGATTAAAACCACATATATTATCTTTCTGAAGTTGCAGTAGAGCAGATCACATCCAGT
66 TGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGT
* * *
24981377 TTTATCTCTCTGAAGTTACAGTGGAGCAGACAAAAGAAACCAATCTTATCTCCCTGAAGTTGTAG
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGACAAAAGAAACCAATCTTATCTCCCTGAAGTTGCAG
24981442 TGGAGCGGATTAAAACCACAGATCTTATCTC-CTGAAGTTGCAGTAGAGCAGATCGCATCCAGT
66 TGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGT
* * * *
24981505 CTTAT-TCCCTGAAGTTACAGTGGAACAGACGAAAGAAATCAAT-TCTATCTCCCTAAAGTTGCA
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGACAAAAGAAACCAATCT-TATCTCCCTGAAGTTGCA
* * *
24981568 GTGAAGCAGATGAAAACCACAGATCTTATCTCTCTGAAGTTGCAGT
65 GTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGT
24981614 GAAGCGGATT
Statistics
Matches: 329, Mismatches: 34, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
126 1 0.00
127 79 0.24
128 48 0.15
129 200 0.61
130 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (129 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGACAAAAGAAACCAATCTTATCTCCCTGAAGTTGCAG
TGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGT
Found at i:24981727 original size:129 final size:128
Alignment explanation
Indices: 24981594--24981917 Score: 398
Period size: 129 Copynumber: 2.5 Consensus size: 128
24981584 CCACAGATCT
*
24981594 TATCTCTCTGAAGTTGCAGTGAAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTC-CTGAAGTTGCAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTTGCAGTA
* *
24981659 GAAAAGATCGCAACCAATATTATATCCCTAAAGTTACAGTGGAACAAACAGAAGAAATCAATCC
65 GAAAAGATCGCAACAAATATTATATCCCTAAAGTTACAGCGGAACAAACAGAAGAAATCAATCC
* * * **
24981723 TATCTACCTGAAGTTACAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGTGGTA
1 TATCT-CCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTTGCAGTA
** * * * * * * ** ** *
24981788 GAGCAGATTGCAACAAATCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGCTATTAATCC
65 GAAAAGATCGCAACAAATATTATATCCCTAAAGTTACAGCGGAACAAACAGAAGAAATCAATCC
* *
24981852 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACGATAAATCTTATAC-CTCTGAAGTTGCAGT
1 TATCT-CCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAATCTTAT-CTCTCTGAAGTTGCAGT
24981916 AG
64 AG
24981918 GTCGGATTAA
Statistics
Matches: 164, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
129 162 0.99
130 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (128 bp):
TATCTCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTTGCAGTAG
AAAAGATCGCAACAAATATTATATCCCTAAAGTTACAGCGGAACAAACAGAAGAAATCAATCC
Found at i:24981770 original size:173 final size:171
Alignment explanation
Indices: 24981386--24981782 Score: 539
Period size: 173 Copynumber: 2.3 Consensus size: 171
24981376 TTTTATCTCT
* * * *
24981386 CTGAAGTTACAGTGGAGCAGA-CAAAAGAAACCA-ATCTTATCTCCCTGAAGTTGTAGTGGAGCG
1 CTGAAGTTACAGTGGAGCAGATCAAAA-ACA-CAGATCTTATCTCTCTGAAGTTGCAGTGAAGCG
* ** * * *
24981449 GATTAAAACCACAGATCTTATCTCCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATTCCC
64 GATTAAAACCACAAATCTTATCTCCTGAAGTTGCAGTAGAAAAGATCGCAACCAATATTATTCCC
* * * *
24981514 TGAAGTTACAGTGGAACAGACGAAAGAAATCAATTCTATCTCC
129 TAAAGTTACAGTGGAACAAACGAAAGAAATCAATCCTATCTAC
* * * * *
24981557 CTAAAGTTGCAGTGAAGCAGATGAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTGAAGCGGA
1 CTGAAGTTACAGTGGAGCAGATCAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTGAAGCGGA
24981622 TTAAAACCACAAATCTTATCTCTCTGAAGTTGCAGTAGAAAAGATCGCAACCAATATTATATCCC
66 TTAAAACCACAAATCTTATCTC-CTGAAGTTGCAGTAGAAAAGATCGCAACCAATATTAT-TCCC
24981687 TAAAGTTACAGTGGAACAAAC-AGAAGAAATCAATCCTATCTAC
129 TAAAGTTACAGTGGAACAAACGA-AAGAAATCAATCCTATCTAC
* *
24981730 CTGAAGTTACAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTG
1 CTGAAGTTACAGTGGAGCAGATCAAAAACACAGATCTTATCTCTCTGAAGTTG
24981783 TGGTAGAGCA
Statistics
Matches: 196, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
170 2 0.01
171 69 0.35
172 37 0.19
173 88 0.45
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (171 bp):
CTGAAGTTACAGTGGAGCAGATCAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTGAAGCGGA
TTAAAACCACAAATCTTATCTCCTGAAGTTGCAGTAGAAAAGATCGCAACCAATATTATTCCCTA
AAGTTACAGTGGAACAAACGAAAGAAATCAATCCTATCTAC
Found at i:24981874 original size:173 final size:171
Alignment explanation
Indices: 24981389--24981827 Score: 453
Period size: 173 Copynumber: 2.6 Consensus size: 171
24981379 TATCTCTCTG
* * * * * * *
24981389 AAGTTACAGTGGAGCAGA-CAAAAGAAACCA-ATCTTATCTCCCTGAAGTTGTAGTGGAGCGGAT
1 AAGTTACAGTGAAGCAGATGAAAA-ACA-CAGATCTTATCTCTCTGAAGTTGCAGTGAAGCAGAT
* * ** * * *
24981452 TAA-AACCACAGATCTTATCT-CCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTAT-TCCC
64 TAACAA-CA-A-ATCTTATCTCCCTGAAGTTACAGCAGAAAAGATCGCAACCAATATTATATCCC
* * *
24981514 TGAAGTTACAGTGGAACAGACGAAAGAAATCAATTCTATCTCCCTA
126 TGAAGTTACAGTGGAACAAACGAAAGAAATCAATCCTATCTACCTA
* * *
24981560 AAGTTGCAGTGAAGCAGATGAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTGAAGCGGATTA
1 AAGTTACAGTGAAGCAGATGAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTGAAGCAGATT-
* * * * *
24981625 AAACCACAAATCTTATCTCTCTGAAGTTGCAGTAGAAAAGATCGCAACCAATATTATATCCCTAA
65 -AACAACAAATCTTATCTCCCTGAAGTTACAGCAGAAAAGATCGCAACCAATATTATATCCCTGA
*
24981690 AGTTACAGTGGAACAAAC-AGAAGAAATCAATCCTATCTACCTG
129 AGTTACAGTGGAACAAACGA-AAGAAATCAATCCTATCTACCTA
* * * **
24981733 AAGTTACAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGTGGT-AGAGCAGATT
1 AAGTTACAGTGAAGCAGATGAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTGA-AGCAGATT
*
24981797 -GCAACAAATCTTATCTCCCTGAAGTTACAGC
65 AACAACAAATCTTATCTCCCTGAAGTTACAGC
24981828 GGAGCAGATT
Statistics
Matches: 226, Mismatches: 33, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
170 28 0.12
171 57 0.25
172 39 0.17
173 101 0.45
174 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (171 bp):
AAGTTACAGTGAAGCAGATGAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTGAAGCAGATTA
ACAACAAATCTTATCTCCCTGAAGTTACAGCAGAAAAGATCGCAACCAATATTATATCCCTGAAG
TTACAGTGGAACAAACGAAAGAAATCAATCCTATCTACCTA
Found at i:24983552 original size:21 final size:22
Alignment explanation
Indices: 24983523--24983586 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 22
24983513 TTGCAATTTA
24983523 TTTAT-TTATTTATTTTAAA-C
1 TTTATATTATTTATTTTAAATC
*
24983543 TTTATATTATTTATTTTAAATTG
1 TTTATATTATTTATTTTAAA-TC
24983566 TTCTAGTATTATTTATTTTAA
1 TT-TA-TATTATTTATTTTAA
24983587 GTTTTTTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
20 5 0.13
21 14 0.37
23 2 0.05
24 2 0.05
25 15 0.39
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (22 bp):
TTTATATTATTTATTTTAAATC
Found at i:24983828 original size:20 final size:21
Alignment explanation
Indices: 24983783--24983828 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
24983773 TTTTGACATA
24983783 TTAT-TTATTTTAAACTTTTT
1 TTATATTATTTTAAACTTTTT
**
24983803 ACATATTATTTTAAA-TTTTT
1 TTATATTATTTTAAACTTTTT
24983823 TTATAT
1 TTATAT
24983829 GTTATTTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATATTATTTTAAACTTTTT
Found at i:24983842 original size:27 final size:26
Alignment explanation
Indices: 24983780--24983911 Score: 98
Period size: 27 Copynumber: 5.2 Consensus size: 26
24983770 TCCTTTTGAC
* * *
24983780 ATATTATTTATTTTAAA-CTTTTTAC
1 ATATTATTTGTTTTAAATTTTTTTAT
24983805 ATATTA----TTTTAAATTTTTTTAT
1 ATATTATTTGTTTTAAATTTTTTTAT
* * *
24983827 ATGTTATTTGTTTTTAAATTGCTTTGA-
1 ATATTATTTG-TTTTAAATT-TTTTTAT
**
24983854 ATATTATTCATTTT-AATTTGTTTTAT
1 ATATTATTTGTTTTAAATTT-TTTTAT
*
24983880 ATATTATTTGTTTTAAATTGTTTTAT
1 ATATTATTTGTTTTAAATTTTTTTAT
24983906 ACTATT
1 A-TATT
24983912 TACTCCAAAT
Statistics
Matches: 83, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
21 7 0.08
22 11 0.13
25 14 0.17
26 23 0.28
27 24 0.29
28 4 0.05
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.63
Consensus pattern (26 bp):
ATATTATTTGTTTTAAATTTTTTTAT
Found at i:24984516 original size:60 final size:60
Alignment explanation
Indices: 24984448--24984568 Score: 224
Period size: 60 Copynumber: 2.0 Consensus size: 60
24984438 TAACTAAGTA
*
24984448 AGTTTTTAGAATTCATTCGCGCATCGGGAATTCAAGACATTGTGTCCTAACTTACTGGAT
1 AGTTTTTAGAATTCATTCGCGCATCGGGAATTCAAGACATTGTGTCCTAACTTACTAGAT
*
24984508 AGTTTTTAGCATTCATTCGCGCATCGGGAATTCAAGACATTGTGTCCTAACTTACTAGAT
1 AGTTTTTAGAATTCATTCGCGCATCGGGAATTCAAGACATTGTGTCCTAACTTACTAGAT
24984568 A
1 A
24984569 TAATTCTCTT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (60 bp):
AGTTTTTAGAATTCATTCGCGCATCGGGAATTCAAGACATTGTGTCCTAACTTACTAGAT
Found at i:25000977 original size:21 final size:22
Alignment explanation
Indices: 25000951--25000993 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
25000941 AAGCATGATT
*
25000951 TATATATGTGAAATG-ATTAAA
1 TATATATATGAAATGAATTAAA
*
25000972 TATATATATGAATTGAATTAAA
1 TATATATATGAAATGAATTAAA
25000994 AAAATCTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.40
Consensus pattern (22 bp):
TATATATATGAAATGAATTAAA
Found at i:25005400 original size:15 final size:15
Alignment explanation
Indices: 25005382--25005411 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25005372 GTTTATATTG
25005382 AAATATAAACATTTA
1 AAATATAAACATTTA
*
25005397 AAATATAAAGATTTA
1 AAATATAAACATTTA
25005412 TAATTACATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (15 bp):
AAATATAAACATTTA
Found at i:25010216 original size:12 final size:12
Alignment explanation
Indices: 25010199--25010225 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
25010189 TTTTTATTTT
25010199 TATACATATATA
1 TATACATATATA
25010211 TATACATATATA
1 TATACATATATA
25010223 TAT
1 TAT
25010226 TAAAAACGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (12 bp):
TATACATATATA
Found at i:25011411 original size:110 final size:109
Alignment explanation
Indices: 25011214--25011533 Score: 466
Period size: 110 Copynumber: 3.0 Consensus size: 109
25011204 AAGGAAATTT
* *
25011214 TTTTCAAATAAGGCAATGTTTTGCGTCTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
*
25011279 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAA
66 CGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAA
* *
25011323 TTTTAAAATAAGGTAATGTTTTGTGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
1 TTTTAAAATAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
*
25011388 TCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAA
65 TCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAA
* * * * * * *
25011433 TTTCAAAATAAGACAATGTTTTGCGTTTGGAAATTTGAG-GAACGTACCCTAAGGTGCTGGGTTT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* * *
25011497 CGA--TTTCTCGTTTAACCAAATAGCCAAATATCCTTTT
66 CGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
25011534 GAATTTCAAT
Statistics
Matches: 191, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
106 30 0.16
108 24 0.13
109 34 0.18
110 103 0.54
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (109 bp):
TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAA
Found at i:25016604 original size:45 final size:44
Alignment explanation
Indices: 25016465--25016919 Score: 233
Period size: 44 Copynumber: 10.3 Consensus size: 44
25016455 ACAGATTAAT
* *
25016465 GAAGACAACAGATCTTGCCTTCCTGCATTGATAGTGAAGCAGATC
1 GAAGACAACAGATCTTGCCTTCCT-CATTGACAGCGAAGCAGATC
* * * * * * *
25016510 GAAGAC-ACAAACCTTGCC-TCTCTCGGTTG-TAGC-AGAGCTGGTT
1 GAAGACAACAGATCTTGCCTTC-CTC-ATTGACAGCGA-AGCAGATC
* *
25016553 GAAGACAACAGATCTTACCTTCCTGCATTGACAGCGAAGTAGATC
1 GAAGACAACAGATCTTGCCTTCCT-CATTGACAGCGAAGCAGATC
* * * * * * *
25016598 GAAGAC-ACAAACCTTGCC-TCTCTCGGTTG-TAGC-AGAGCTGGTT
1 GAAGACAACAGATCTTGCCTTC-CTC-ATTGACAGCGA-AGCAGATC
* * *
25016641 GAAGACAACAGATCTTGCCTTCCTGTATTGATAGTGAAGCAGATC
1 GAAGACAACAGATCTTGCCTTCCT-CATTGACAGCGAAGCAGATC
* * * * * * *
25016686 GAAGAC-ACAAACCTTGCCTGT-CTCGGTTG-TAGC-AGAGCTGGTT
1 GAAGACAACAGATCTTGCCT-TCCTC-ATTGACAGCGA-AGCAGATC
*
25016729 GAAGACAACAGATCTTGCCTTCCTATATTGACAGCGAAGCAGATC
1 GAAGACAACAGATCTTGCCTTCCT-CATTGACAGCGAAGCAGATC
* * * * * *
25016774 GAAGAC-ACAAACCTTGCC-TCTCTCGGTTG-CAGC-AGAGCTGGTT
1 GAAGACAACAGATCTTGCCTTC-CTC-ATTGACAGCGA-AGCAGATC
* * * *
25016817 AAAGACAACAGATCTTACCTTCCTACATTGACAGTGAAGCAGATT
1 GAAGACAACAGATCTTGCCTTCCT-CATTGACAGCGAAGCAGATC
* * * *
25016862 GAAGACAGCAGATTTTGCCTTCCTGTATTGACAGCGAAACAGATC
1 GAAGACAACAGATCTTGCCTTCCT-CATTGACAGCGAAGCAGATC
25016907 GAAGATCAA-AGAT
1 GAAGA-CAACAGAT
25016920 GACAGATTTT
Statistics
Matches: 303, Mismatches: 74, Indels: 66
0.68 0.17 0.15
Matches are distributed among these distances:
42 4 0.01
43 64 0.21
44 119 0.39
45 110 0.36
46 6 0.02
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (44 bp):
GAAGACAACAGATCTTGCCTTCCTCATTGACAGCGAAGCAGATC
Found at i:25016613 original size:88 final size:88
Alignment explanation
Indices: 25016464--25016868 Score: 675
Period size: 88 Copynumber: 4.6 Consensus size: 88
25016454 AACAGATTAA
*
25016464 TGAAGACAACAGATCTTGCCTTCCTGCATTGATAGTGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACACAAACCTTGCCT
25016529 CTCTCGGTTGTAGCAGAGCTGGT
66 CTCTCGGTTGTAGCAGAGCTGGT
* * *
25016552 TGAAGACAACAGATCTTACCTTCCTGCATTGACAGCGAAGTAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACACAAACCTTGCCT
25016617 CTCTCGGTTGTAGCAGAGCTGGT
66 CTCTCGGTTGTAGCAGAGCTGGT
* *
25016640 TGAAGACAACAGATCTTGCCTTCCTGTATTGATAGTGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACACAAACCTTGCCT
*
25016705 GTCTCGGTTGTAGCAGAGCTGGT
66 CTCTCGGTTGTAGCAGAGCTGGT
** *
25016728 TGAAGACAACAGATCTTGCCTTCCTATATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACACAAACCTTGCCT
*
25016793 CTCTCGGTTGCAGCAGAGCTGGT
66 CTCTCGGTTGTAGCAGAGCTGGT
* * * *
25016816 TAAAGACAACAGATCTTACCTTCCTACATTGACAGTGAAGCAGATTGAAGACA
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACA
25016869 GCAGATTTTG
Statistics
Matches: 297, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 297 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (88 bp):
TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACACAAACCTTGCCT
CTCTCGGTTGTAGCAGAGCTGGT
Found at i:25017023 original size:95 final size:95
Alignment explanation
Indices: 25016902--25017387 Score: 749
Period size: 95 Copynumber: 5.1 Consensus size: 95
25016892 ACAGCGAAAC
* *
25016902 AGATCGAAGATCAAAGATGACAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGA
1 AGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGA
* *
25016967 TAATTCTATCTCCCTGATTGGCAGCGAAAT
66 TAATTCTATCTCCCTGATTGGCAGTGGAAT
* * * *
25016997 AGATTGAAGATCGAATATGGCAGATTTTACCTCCCTATGACTACAGTGGAGTACATTGAAGTCGA
1 AGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGA
* *
25017062 TAATTCTATGTCCCTGGTTGGCAGTGGAAT
66 TAATTCTATCTCCCTGATTGGCAGTGGAAT
* *
25017092 AGATTGAAGATCAAAGATGGCAGGTTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCTGA
1 AGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGA
*
25017157 TAATTCTATCTCCCTGGTTGGCAGTGGAAT
66 TAATTCTATCTCCCTGATTGGCAGTGGAAT
* * * * * * *
25017187 AGATCGTAGATCGAAGATGGCTGATTTTACCTCCTTGTGACTACAGTGGAGTACATTGAGGCCAA
1 AGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGA
25017252 TAATTCTATCTCCCTGATTGGCAGTGGAAT
66 TAATTCTATCTCCCTGATTGGCAGTGGAAT
* *
25017282 AGATT-ACAGATCAAAGATGGCAGATTTTACCTCCTTATGACTACAGTGGAGTACATTGAAGCCG
1 AGATTGA-AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCG
*
25017346 ATAATTCTATCTCCCTGGTTGGCAGTGGAAT
65 ATAATTCTATCTCCCTGATTGGCAGTGGAAT
25017377 AGATTGAAGAT
1 AGATTGAAGAT
25017388 TTCAAAGCTT
Statistics
Matches: 354, Mismatches: 35, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
95 353 1.00
96 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (95 bp):
AGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGA
TAATTCTATCTCCCTGATTGGCAGTGGAAT
Found at i:25017514 original size:126 final size:126
Alignment explanation
Indices: 25017288--25017639 Score: 524
Period size: 126 Copynumber: 2.8 Consensus size: 126
25017278 GAATAGATTA
* *
25017288 CAGATCAAAGATGGCAGATTTTACCTCCTTATGACTACAGTGGAGTACATTGAAGCCGATAATTC
1 CAGATCGAAGATGGCAGATTTTACCTCCTTATGACTACAGTGGAGTACATTGAAGCCAATAATTC
* *
25017353 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAAAGCTTATCTCCCTAAGTGGAG
66 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAAAGCTTATCTCCCAAAGTGAAG
* * * * *
25017414 TAGATCGAAGATGACATATTTTACCTCCTTCTGACTACAGTGGAGTACATTAAAGCCAATAATTC
1 CAGATCGAAGATGGCAGATTTTACCTCCTTATGACTACAGTGGAGTACATTGAAGCCAATAATTC
* * * *
25017479 TATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATTTCCCAAAGTGAAG
66 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAAAGCTTATCTCCCAAAGTGAAG
* * * * * *
25017540 CAGATTGAGGATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTC
1 CAGATCGAAGATGGCAGATTTTACCTCCTTATGACTACAGTGGAGTACATTGAAGCCAATAATTC
*
25017605 TATCTCCCTGGTTGGTAGTGGAATAGATTGAAGAT
66 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGAT
25017640 CGAAGATGGT
Statistics
Matches: 201, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
126 201 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (126 bp):
CAGATCGAAGATGGCAGATTTTACCTCCTTATGACTACAGTGGAGTACATTGAAGCCAATAATTC
TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAAAGCTTATCTCCCAAAGTGAAG
Found at i:25017614 original size:44 final size:44
Alignment explanation
Indices: 25017564--25017709 Score: 118
Period size: 44 Copynumber: 3.2 Consensus size: 44
25017554 CAGATTTTAC
25017564 CTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
1 CTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
** * * * * *
25017608 CTCCCTG-G-TTGGTAGTGGAATAGATTGAAGATCGAAGATGGTAGATTTTAC
1 CTCCCTGTGATT-ACAGTGGAGTACATTGAAG--C---CA--GTA-ATTCTAT
25017659 CTCCCTGTGATTACAGTGGAGTACATTGAAGCC-GATAATTCTAT
1 CTCCCTGTGATTACAGTGGAGTACATTGAAGCCAG-TAATTCTAT
25017703 CTCCCTG
1 CTCCCTG
25017710 GTTGGCAGTG
Statistics
Matches: 76, Mismatches: 14, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
42 2 0.03
43 16 0.21
44 20 0.26
45 3 0.04
48 1 0.01
50 4 0.05
51 12 0.16
52 16 0.21
53 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (44 bp):
CTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
Found at i:25017635 original size:43 final size:43
Alignment explanation
Indices: 25017577--25017732 Score: 118
Period size: 43 Copynumber: 3.4 Consensus size: 43
25017567 CCTGTGATTA
*
25017577 CAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGTTGG
1 CAGTGGAATACATTGAAGCCAGTAATTCTATCTCCCTGGTTGG
* * * * * *
25017620 TAGTGGAATAGATTGAAGATCGAAGATGGTAGATTTTACCTCCCTGTGATT-A
1 CAGTGGAATACATTGAAG--C---CA--GTA-ATTCTATCTCCCTG-G-TTGG
*
25017672 CAGTGGAGTACATTGAAGCC-GATAATTCTATCTCCCTGGTTGG
1 CAGTGGAATACATTGAAGCCAG-TAATTCTATCTCCCTGGTTGG
*
25017715 CAGTGGAATAGATTGAAG
1 CAGTGGAATACATTGAAG
25017733 ATTTCAAATC
Statistics
Matches: 85, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
42 2 0.02
43 32 0.38
44 13 0.15
45 3 0.04
48 1 0.01
50 4 0.05
51 12 0.14
52 16 0.19
53 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
CAGTGGAATACATTGAAGCCAGTAATTCTATCTCCCTGGTTGG
Found at i:25017642 original size:221 final size:221
Alignment explanation
Indices: 25017415--25017836 Score: 666
Period size: 221 Copynumber: 1.9 Consensus size: 221
25017405 TAAGTGGAGT
* *
25017415 AGATCGAAGATGACATATTTTACCTCCTTCTGACTACAGTGGAGTACATTAAAGCCAATAATTCT
1 AGATCGAAGATGACAGATTTTACCTCCCTCTGACTACAGTGGAGTACATTAAAGCCAATAATTCT
* *
25017480 ATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATTTCCCAAAGTGAAGCAGAT
66 ATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCAAAGTGAAGCAGAT
* * * *
25017545 TGAGGATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAG-TAATTCTATC
131 CGAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTAAAG-CAGATAATTCTATC
25017609 TCCCTGGTTGGTAGTGGAATAGATTGA
195 TCCCTGGTTGGTAGTGGAATAGATTGA
** * * * *
25017636 AGATCGAAGATGGTAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCGAAGATGACAGATTTTACCTCCCTCTGACTACAGTGGAGTACATTAAAGCCAATAATTCT
* * *
25017701 ATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGTGGAGCAGAT
66 ATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCAAAGTGAAGCAGAT
*
25017766 CGAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTAAAGCTGATAATTCTATCT
131 CGAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTAAAGCAGATAATTCTATCT
25017831 CCCTGG
196 CCCTGG
25017837 GCAGCAATGA
Statistics
Matches: 182, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
220 2 0.01
221 180 0.99
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (221 bp):
AGATCGAAGATGACAGATTTTACCTCCCTCTGACTACAGTGGAGTACATTAAAGCCAATAATTCT
ATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCAAAGTGAAGCAGAT
CGAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTAAAGCAGATAATTCTATCT
CCCTGGTTGGTAGTGGAATAGATTGA
Found at i:25017712 original size:95 final size:95
Alignment explanation
Indices: 25017549--25017734 Score: 338
Period size: 95 Copynumber: 2.0 Consensus size: 95
25017539 GCAGATTGAG
25017549 GATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
1 GATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
*
25017614 GGTTGGTAGTGGAATAGATTGAAGATCGAA
66 GGTTGGCAGTGGAATAGATTGAAGATCGAA
*
25017644 GATGGTAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCC-GATAATTCTATCTCCC
1 GATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAG-TAATTCTATCTCCC
25017708 TGGTTGGCAGTGGAATAGATTGAAGAT
65 TGGTTGGCAGTGGAATAGATTGAAGAT
25017735 TTCAAATCTT
Statistics
Matches: 88, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
94 1 0.01
95 87 0.99
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (95 bp):
GATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
GGTTGGCAGTGGAATAGATTGAAGATCGAA
Found at i:25017853 original size:347 final size:347
Alignment explanation
Indices: 25017202--25017867 Score: 1064
Period size: 347 Copynumber: 1.9 Consensus size: 347
25017192 GTAGATCGAA
* * *
25017202 GATGGCTGATTTTACCTCCTTGTGACTACAGTGGAGTACATTGAGGCCAATAATTCTATCTCCCT
1 GATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCT
*
25017267 GATTGGCAGTGGAATAGATTACAGATCAAAGATGGCAGATTTTACCTCCTTATGACTACAGTGGA
66 GATTGGCAGTGGAATAGATTACAGATCAAAGATGGCAGATTTTACCTCCCTATGACTACAGTGGA
25017332 GTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAAAGCT
131 GTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAAAGCT
* * *
25017397 TATCTCCCTAAGTGGAGTAGATCGAAGATGACATATTTTACCTCCTTCTGACTACAGTGGAGTAC
196 TATCTCCCTAAGTGGAGCAGATCGAAGATGACAGATTTTACCTCCCTCTGACTACAGTGGAGTAC
*** * * * *
25017462 ATTAAAGCCAATAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATT
261 ATTAAAGCCAATAATTCTATCTCCCTAGGCAGCAATGAAATAGATTGAAAATTGCAGATCTTATT
25017527 TCCCAAAGTGAAGCAGATTGAG
326 TCCCAAAGTGAAGCAGATTGAG
* *
25017549 GATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
1 GATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCT
* * * * * *
25017614 GGTTGGTAGTGGAATAGATTGA-AGATCGAAGATGGTAGATTTTACCTCCCTGTGATTACAGTGG
66 GATTGGCAGTGGAATAGATT-ACAGATCAAAGATGGCAGATTTTACCTCCCTATGACTACAGTGG
*
25017678 AGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAAATC
130 AGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAAAGC
* *
25017743 TTATCTCCCTAAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTA
195 TTATCTCCCTAAGTGGAGCAGATCGAAGATGACAGATTTTACCTCCCTCTGACTACAGTGGAGTA
** *
25017808 CATTAAAGCTGATAATTCTATCTCCCTGGGCAGCAATGAAATAGATTGAAAATTGCAGAT
260 CATTAAAGCCAATAATTCTATCTCCCTAGGCAGCAATGAAATAGATTGAAAATTGCAGAT
25017868 TCTATCCCCC
Statistics
Matches: 290, Mismatches: 28, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
347 289 1.00
348 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (347 bp):
GATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCT
GATTGGCAGTGGAATAGATTACAGATCAAAGATGGCAGATTTTACCTCCCTATGACTACAGTGGA
GTACATTGAAGCCGATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAAAGCT
TATCTCCCTAAGTGGAGCAGATCGAAGATGACAGATTTTACCTCCCTCTGACTACAGTGGAGTAC
ATTAAAGCCAATAATTCTATCTCCCTAGGCAGCAATGAAATAGATTGAAAATTGCAGATCTTATT
TCCCAAAGTGAAGCAGATTGAG
Found at i:25017879 original size:126 final size:126
Alignment explanation
Indices: 25017636--25017881 Score: 359
Period size: 126 Copynumber: 2.0 Consensus size: 126
25017626 AATAGATTGA
* * *
25017636 AGATCGAAGATGGTAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTAAAGCCGATAATTCT
*** * * * * *
25017701 ATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGTGGAGC
66 ATCTCCCTGGGCAGCAATGAAATAGATTGAAAATTGCAAATCTTATCCCCCTAAGTGGAGC
*
25017762 AGATCGAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTAAAGCTGATAATTCT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTAAAGCCGATAATTCT
*
25017827 ATCTCCCTGGGCAGCAATGAAATAGATTGAAAATTGCAGAT-TCTATCCCCCTAAG
66 ATCTCCCTGGGCAGCAATGAAATAGATTGAAAATTGCAAATCT-TATCCCCCTAAG
25017882 CAGTAGTGGA
Statistics
Matches: 106, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
125 1 0.01
126 105 0.99
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (126 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTAAAGCCGATAATTCT
ATCTCCCTGGGCAGCAATGAAATAGATTGAAAATTGCAAATCTTATCCCCCTAAGTGGAGC
Found at i:25018707 original size:12 final size:12
Alignment explanation
Indices: 25018690--25018714 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25018680 TTTTTATTTT
25018690 TATACATATATA
1 TATACATATATA
25018702 TATACATATATA
1 TATACATATATA
25018714 T
1 T
25018715 TAAAAACGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TATACATATATA
Found at i:25019345 original size:3 final size:3
Alignment explanation
Indices: 25019337--25019391 Score: 62
Period size: 3 Copynumber: 19.0 Consensus size: 3
25019327 TATTTTTAAC
* *
25019337 ATT ATT ATT -TT CA-T ATT TTT ATT ACT ATT ATT ATT ATT -TT ATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
25019380 ATT ATT ATT ATT
1 ATT ATT ATT ATT
25019392 GCTTTTATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
2 5 0.11
3 39 0.89
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:25019376 original size:20 final size:20
Alignment explanation
Indices: 25019353--25019391 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
25019343 ATTTTCATAT
25019353 TTTTATTACTATTATTATTA
1 TTTTATTACTATTATTATTA
*
25019373 TTTTATTATTATTATTATT
1 TTTTATTACTATTATTATT
25019392 GCTTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTATTACTATTATTATTA
Found at i:25019917 original size:110 final size:109
Alignment explanation
Indices: 25019725--25020039 Score: 492
Period size: 110 Copynumber: 2.9 Consensus size: 109
25019715 AAATTTTTGC
25019725 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
* * *
25019790 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
66 TTTCTCGTTCAACCAAATAGCTAAATATCCTTTTAAAAATTTCA
25019834 AAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
1 AAATAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
* *
25019899 TTTTCTCATTCAACCAAATCGCTAAATATCCTTTTAAAAATTTCA
65 TTTTCTCGTTCAACCAAATAGCTAAATATCCTTTTAAAAATTTCA
* * * * *
25019944 AAATAAGGCAATGTTTTGCGTTTGGAAATTTGAG-GAACGTACCCTAAGGTGCTGGGTTTCGA--
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
* *
25020006 TTTCTCGTTTAACCAAATAGCCAAATATCCTTTT
66 TTTCTCGTTCAACCAAATAGCTAAATATCCTTTT
25020040 GAATTTCAAT
Statistics
Matches: 192, Mismatches: 13, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
106 30 0.16
108 24 0.12
109 33 0.17
110 105 0.55
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (109 bp):
AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
TTTCTCGTTCAACCAAATAGCTAAATATCCTTTTAAAAATTTCA
Found at i:25020434 original size:20 final size:20
Alignment explanation
Indices: 25020409--25020446 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
25020399 AATAATAAAA
*
25020409 CTGATCAAAGTTTATAAGCC
1 CTGATCAAAGCTTATAAGCC
25020429 CTGATCAAAGCTTATAAG
1 CTGATCAAAGCTTATAAG
25020447 GCCCAAGCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (20 bp):
CTGATCAAAGCTTATAAGCC
Done.