Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_638 ID=scaffold_638-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8450
ACGTcount: A:0.18, C:0.18, G:0.09, T:0.15
Warning! 3393 characters in sequence are not A, C, G, or T
Found at i:77 original size:46 final size:46
Alignment explanation
Indices: 5--3295 Score: 4373
Period size: 46 Copynumber: 71.5 Consensus size: 46
1 ATAT
* * * *
5 AGGAAGACAATATCTGATATCCTCGATCCCCTCCGCTCCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
51 AGGAAGCCAAGATCTGCTATTTTCGATCCCCTCCCCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * * *
97 AAGAAGACAAGATTTGCTATCTTAGTTCCCCTCCGCTGCCAAACAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * *
143 CGGAAGACAAGATCTACTATCTTCGATCCCCTCTGCTGCCAAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
*
189 AGGAAGACAAGATCTGCTATCTTCGATCCCCTTCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
235 AGGAAGACAAGATCTGCTATCCTCGATCTCCTCTGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * * *
281 ATGAAGATAAGATCTACTATCTTCGAGCCCCTCTGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
327 AGGAAGGAGAGGATCTGCTATCTTCGATCCCCTCCGCTGCCAATTAC
1 AGGAA-GACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
*
374 A-GAAGACAAGATCTAG-TATTCTTCGATCCCCCCTCGCTGCCAAATAC
1 AGGAAGACAAGATCT-GCTA-TCTTCGATCCCCTC-CGCTGCCAAATAC
* * * * * **
421 TGGAAGGAC-AGATCTTCTATCCTCGATCCCCTTTCGCTACCAAATTT
1 AGGAA-GACAAGATCTGCTATCTTCGATCCCC-TCCGCTGCCAAATAC
* * * *
468 AGGAAGACAAGATCTGATATCGTCAATCCCCTCTGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
*
514 AGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
560 AGGAAGACAAGATCTACTATCTACGA-CCCATTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCC-CTCCGCTGCCAAATAC
* * * *
606 AAGAAGACAAGATCTGATATCTTCGATCCCCTCTGCTGCCAAATTC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
*
652 AGGAGGACAAGATCTGCTATCTTCGATCCCC-CCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
697 AGGAAGACAAGATCTGCTATCTTTGATCCCCTCCACTGCGAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
743 AGGAAGACAAGATTTGATATCTTCGATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * *
789 AGGAAGCCAGGATCTGCTATTTTCGATCCCCTCCCCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * * *
835 AAGAAGATAAGATTTGCTATCTTCGTTCCCGTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * *
881 AAGAAGACAAGATCTACTATCTTCGATCCCCTCTGCTGCCAAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
927 AGGAAAACAAGATCTGCTATCTTCGATCCCCTTCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
973 AGGAAGACAAGATCTGCTATCCTCGATCTCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * *
1019 ATGG-AGATAAGATCTACTATCTTCGATCCCCTCTGCTACCAAATAC
1 A-GGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * * *
1065 AGGAAGACAAGATATGTTATCTTCAATCCCC-CCACTACCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
*
1110 AGGAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * * * *
1156 AGGAAAACATGATCTGCTATCTTCGATCTCCTTCGTTGCAAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
1202 AGGAAAACAAGATCTGCTATCTTCGATCCCC-CTGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
1247 AGGAAGACAAGATCTGATATCCTCGATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
1293 AGGAAGCCAAGATCTGCTATTTTCGATCCCCTCCCCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * *
1339 AAGAAGACAAGATTTGCTATCTTCGTTCCCCTCCACTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
1385 AGGAAGATAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
1431 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
1477 AGGAAAACATGATCTGCTATCTTCGATCTCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
*
1523 AGGAAGACAAGATCTGCTATCTTCGACTCCCCTCCGCTCCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGA-TCCCCTCCGCTGCCAAATAC
*
1570 AGGAAGACAAGATCTGCTACCTTCGATCCCCTCCGCT-CCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
1615 AGGAAGATAAGATTTGCTATATTCGATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * * * *
1661 AGGAAGACAAGATCTGATATCTTCAATCCCTTTCGCTGCTAAATTC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
1707 AGGAAGACAAGATCTGATATCTTCGATCCCCTCTGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
1753 AGAAAGACAAGATCTGCTATCGTCGATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * *
1799 AGGAAGAAAAGATCTGATATCTTCGATCCCCTCCGCTTCTAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
1845 AGGAAGACAAGATCTGCTATCTTCGATCCCATTCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* **
1891 AGGAAGAAAAGATCTAATATCTTCGATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
1937 AGGAAGACAAGATCTGCTATCTTTGAT-CCCTTCGCTACCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * * ** *
1982 AGGAAGACAAGATTTGCTATCCTCGATCTCTTCCATTTCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
2028 AAGAGGACAAGATCTGTTATCTTCGATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
2074 -GAGAAGACAAGATTTGATATCTTCGATCCCCTCCGCTGCCAGATAC
1 AG-GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
*
2120 AGGAAGACAAGATCTGCTATCTTTGATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * * *
2166 AGGAAGACAAGATCTGATATCTTCAATCCCTTTCGCTGCCAAATTC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
2212 AGGAAGACAAGATCTGATATCTTCGATCCCCTCTGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
2258 AGGAAGACAAGATCTGCTATCGTCGATCCCCTCTGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
2304 AGGAAGAAAAGATCTGATATCTTCGATCCCCTCTGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
2350 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTG-CCAAATAC
* *
2397 AGGAAGACAAGATCTACTATCTTCGATCCCCTTTCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCC-TCCGCTGCCAAATAC
* *
2444 AGGAAGACAAGATCTACTATCTTCCGATCCCCCTCCCGCTGCCAAGTAC
1 AGGAAGACAAGATCTGCTATCTT-CGAT-CCCCT-CCGCTGCCAAATAC
* *
2493 AAGAAGACAAGATCTGCTATCTTCGATCCCCTTCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
2539 CGGAAGACAAGATCTGCTATCCTCGA-CCTCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCC-CCTCCGCTGCCAAATAC
* * *
2585 ATGG-AGATAAGATCTACTATCTTCGATCCCCTCTGCTGCCAAATAC
1 A-GGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * * * *
2631 AGGAAAACAAGATATGCTATATTCAATCCCC-CCACTACCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
**
2676 AGGAAGACAAGATCTGCTATCTTTAATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * * *
2722 AGGAAAACATGATCTGCTATCTTCGATCTCCTTCGTTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
*
2768 AGGAAAACAAGATCTGCTATCTTCGATCCCC-CCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * *
2813 AGGAAGTCAAGATCTGCAATCTTTGATCCCCTCCGCTGCGAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
2859 AGGAAGACAAGATCTGATATCCTCGATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
2905 AGGAAGCCAAGATCTGCTATTTTCGATCCCCTCCCCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
2951 AAGAAGACAAGATTTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* *
2997 AGGAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAGTAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * *
3043 AAGAAGACAAGATCTGCTATCCTCGATCCCCTTCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * * *
3089 TGGAAGACAAGATCTGCTATCCTCGATCTCCTCTGCTACCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
* * * ** *
3135 ATGAAAGATAAGATCTACTATCTTCGATCCCCTTTGCTGCCAAATAT
1 A-GGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
*
3182 AGGAAGACAAGATCTGCTATCGTCGATCCTCCTCCGCT-CCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCC-CCTCCGCTGCCAAATAC
* * * *
3228 AAGAAGACAAGATCTACTATCTTCGATCTCTTCCGCTGCCAAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
*
3274 AGGAAGACAAGATCTCCTATCT
1 AGGAAGACAAGATCTGCTATCT
3296 NNNNNNNNNN
Statistics
Matches: 2824, Mismatches: 386, Indels: 70
0.86 0.12 0.02
Matches are distributed among these distances:
45 303 0.11
46 2193 0.78
47 262 0.09
48 26 0.01
49 40 0.01
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (46 bp):
AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAC
Found at i:4791 original size:46 final size:46
Alignment explanation
Indices: 4654--5244 Score: 726
Period size: 46 Copynumber: 12.9 Consensus size: 46
4644 NNNNNNNNNN
* * * *
4654 AAGACATGATCTGCTATCTTCGATCTCCTTCGTTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
*
4700 AAAACAAGATCTGCTATCTTCGATCCCC-CCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* *
4745 AAGACAAGATAT-CATATCCTCGATCCCCTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGC-TATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * *
4791 AAGCCAAGATCTGCTATTTTCGATCCCCTCCCCTGCCAAATACAAG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* *
4837 AAGACAAGATTTGCTATCTTCGTTCCCCTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * *
4883 AAGACAAGATCTACTATCTTCGCTCCCCTCCGCTGCCAAGTACAAG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
*** * *
4929 ACCCCAAGATCTGCTATCTTCGATCCCCTTCGCTGCCAAATACCGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * * * *
4975 AAGACAAGATCTACTATCCTCGATCTCCTCTGCTGCCGAATACATG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * *
5021 AAGATAAGATCTACTATCTTCGATCCCCTCTGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
*
5067 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACTGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * * * *
5113 AA-AGCATGATTTGCTATCTTCGATCTCCTTCGTTGCCAAATATAGG
1 AAGA-CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * *
5159 AAGACAAGATCTGCTATCTTCGATCTCTTTCGCT-CCAAATAAAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
*
5204 AAGACATGATCTGCTATCTTCGATCTCCCT-CG-TGCCAAATA
1 AAGACAAGATCTGCTATCTTCGATC-CCCTCCGCTGCCAAATA
5245 TAGAAAACAN
Statistics
Matches: 469, Mismatches: 69, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
44 2 0.00
45 82 0.17
46 383 0.82
47 2 0.00
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (46 bp):
AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
Found at i:6577 original size:46 final size:46
Alignment explanation
Indices: 6510--7127 Score: 696
Period size: 46 Copynumber: 13.5 Consensus size: 46
6500 NNNNNNNNNN
* * *
6510 CGATCCCCT-TCGCTGCCAAATACCGGAAAACAAGATCTGCTATCCT
1 CGATCCCCTCT-GCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
* * * *
6556 CGATCTCCTCTGCTGCCAAATACATGAAGATAAGATCTACTATCTT
1 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
*
6602 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATATGCTATCTT
1 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
* ** * *
6648 CAATCCCC-CCACTACCAAATACAGGAAGATAAGATCTGCTATCTT
1 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
* * *
6693 CGATCCCCTCCGCTGCCAAATACTGGAA-AGCATGATCTGCTATCTT
1 CGATCCCCTCTGCTGCCAAATACAGGAAGA-CAAGATCTGCTATCTT
* * *
6739 CGATCTCCT-TCGTTGCCAAATATAGGAAGACAAGATCTGCTATCTT
1 CGATCCCCTCT-GCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
* * * *
6785 CGAT-CTCTTTCGCT-CCAAATCCAGGAAGACAAGATCTACTATCTT
1 CGATCCCCTCT-GCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
* *
6830 CGATCCCCTCTGCTGCCAAATACAGGAAGATAAGATATGCTATCTT
1 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
* ** **
6876 CAATCCCC-CCACAACCAAATACAGGAAGACAAGATCTGCTATCTT
1 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
* * * *
6921 CGATCCCCTCCGCTGCCAAATACAAGAAGACAAGATTTGATATCTT
1 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
* * * * *
6967 CAAT-CCCTTTCGCTGCCAAATTCAGGAAGACAAGATCTGATATCGT
1 CGATCCCCTCT-GCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
* *
7013 CAATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCCATCTT
1 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
* * * *
7059 CGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTACTATCTA
1 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
* *
7105 CGA-CCCATTCCGCTGCCAAATAC
1 CGATCCC-CTCTGCTGCCAAATAC
7128 NNNNNNNNNN
Statistics
Matches: 484, Mismatches: 76, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
45 121 0.25
46 356 0.74
47 7 0.01
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (46 bp):
CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
Found at i:6698 original size:91 final size:92
Alignment explanation
Indices: 6510--7127 Score: 703
Period size: 91 Copynumber: 6.8 Consensus size: 92
6500 NNNNNNNNNN
* * * * *
6510 CGATCCCCT-TCGCTGCCAAATACCGGAAAACAAGATCTGCTATCCTCGATCTCCTCTGCTGCCA
1 CGATCCCCTCT-GCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCA
* * *
6574 AATACATGAAGATAAGATCTACTATCTT
65 AATACAGGAAGACAAGATCTGCTATCTT
* * * *
6602 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATATGCTATCTTCAATCCCC-CCACTACCAA
1 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAA
*
6666 ATACAGGAAGATAAGATCTGCTATCTT
66 ATACAGGAAGACAAGATCTGCTATCTT
* * * * * *
6693 CGATCCCCTCCGCTGCCAAATACTGGAA-AGCATGATCTGCTATCTTCGATCTCCTTCGTTGCCA
1 CGATCCCCTCTGCTGCCAAATACAGGAAGA-CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCA
*
6757 AATATAGGAAGACAAGATCTGCTATCTT
65 AATACAGGAAGACAAGATCTGCTATCTT
* * * * *
6785 CGAT-CTCTTTCGCT-CCAAATCCAGGAAGACAAGATCTACTATCTTCGATCCCCTCTGCTGCCA
1 CGATCCCCTCT-GCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCA
* *
6848 AATACAGGAAGATAAGATATGCTATCTT
65 AATACAGGAAGACAAGATCTGCTATCTT
* ** **
6876 CAATCCCC-CCACAACCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAA
1 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAA
* * *
6940 ATACAAGAAGACAAGATTTGATATCTT
66 ATACAGGAAGACAAGATCTGCTATCTT
* * * * * * *
6967 CAAT-CCCTTTCGCTGCCAAATTCAGGAAGACAAGATCTGATATCGTCAATCCCCTCTGCTGCCA
1 CGATCCCCTCT-GCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCA
*
7031 AATACAGGAAGACAAGATCTGCCATCTT
65 AATACAGGAAGACAAGATCTGCTATCTT
* * * * *
7059 CGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTACTATCTACGA-CCCATTCCGCTGCCA
1 CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCC-CTCCGCTGCCA
7123 AATAC
65 AATAC
7128 NNNNNNNNNN
Statistics
Matches: 439, Mismatches: 76, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
90 5 0.01
91 225 0.51
92 205 0.47
93 4 0.01
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (92 bp):
CGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAA
ATACAGGAAGACAAGATCTGCTATCTT
Found at i:6771 original size:137 final size:137
Alignment explanation
Indices: 6520--7127 Score: 699
Period size: 137 Copynumber: 4.4 Consensus size: 137
6510 CGATCCCCTT
* * * * * *
6520 CGCTGCCAAATACCGGAAAACAAGATCTGCTATCCTCGATCTCCTCTGCTGCCAAATACATGAAG
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * * *
6585 ATAAGATCTACTATCTTCGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATATGCTATCTTCA
66 AT-AGATCTGCTATCTTCAATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCG
6650 ATC-CCCC
130 ATCTCCCC
* * * *
6657 CACTACCAAATACAGGAAGATAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACTGGAAA
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG-AA
* * * *
6722 GCAT-GATCTGCTATCTTCGATCTCCT-TCGTTGCCAAATATAGGAAGACAAGATCTGCTATCTT
65 G-ATAGATCTGCTATCTTCAATCCCCTCT-GCTGCCAAATACAGGAAGACAAGATCTGCTATCTT
***
6785 CGATCTCTTT
128 CGATCTCCCC
* * *
6795 CGCT-CCAAATCCAGGAAGACAAGATCTACTATCTTCGATCCCCTCTGCTGCCAAATACAGGAAG
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* ** **
6859 ATAAGATATGCTATCTTCAATCCCC-CCACAACCAAATACAGGAAGACAAGATCTGCTATCTTCG
66 AT-AGATCTGCTATCTTCAATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCG
6923 ATC-CCCTC
130 ATCTCCC-C
* * * * * * *
6931 CGCTGCCAAATACAAGAAGACAAGATTTGATATCTTCAATCCCTTTCGCTGCCAAATTCAGGAAG
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * * *
6996 ACAAGATCTGATATCGTCAATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCCATCTTCG
66 A-TAGATCTGCTATCTTCAATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCG
*
7061 ATCTCCTC
130 ATCTCCCC
* * *
7069 CGCTGCCAAATACAGGAAGACAAGATCTACTATCTACGA-CCCATTCCGCTGCCAAATAC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCC-CTCCGCTGCCAAATAC
7128 NNNNNNNNNN
Statistics
Matches: 393, Mismatches: 65, Indels: 25
0.81 0.13 0.05
Matches are distributed among these distances:
135 3 0.01
136 43 0.11
137 251 0.64
138 92 0.23
139 4 0.01
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (137 bp):
CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
ATAGATCTGCTATCTTCAATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGA
TCTCCCC
Found at i:7982 original size:46 final size:46
Alignment explanation
Indices: 7908--8438 Score: 767
Period size: 46 Copynumber: 11.6 Consensus size: 46
7898 NNNNNNNNNA
* * * * *
7908 GAAGACAAGATTTGCTATCTTAGTTCCCCTCCGCTGCCAAACACAG
1 GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
* *
7954 GAAGACAAGATCTACTATCTTCGATCCCCTCTGCTGCCAAATATAG
1 GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
* * *
8000 GAAGACAAGATCTGCTATCTTCGATCCCCTTCGCTGCCAAATACAT
1 GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
* * * * * *
8046 GAAGACAAGATCTGCTATCCTCGATCTCCTCTGCTACCAAATACAT
1 GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
* ** *
8092 GAAGATAAGATCTACTATCTTCGATCCCCTTTGCTGCCAAATATAG
1 GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
* *
8138 GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCT-CCAAATACAA
1 GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
*
8183 GAAGACAAGATCTACTATCTTCGATCCCATCCGCTGCCAAATACAG
1 GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
* *
8229 GAAGACAAGATCTCCTATCTTCGATCCCCTTCGCTGCCAAATACAG
1 GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
*
8275 GAAGACAAGATCTACTATCTTCGATCCCCTCTGCTGCCAAATACAG
1 GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
* *
8321 GAAGATAAGATCTACTATCTTCGATCCCCTCTGCTGCCAAATACAG
1 GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
* *
8367 GAAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATACAG
1 GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
* *
8413 GAAAACATGATCTACTATCTTCGATC
1 GAAGACAAGATCTACTATCTTCGATC
8439 TCCTTCGTTG
Statistics
Matches: 435, Mismatches: 49, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
45 41 0.09
46 394 0.91
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (46 bp):
GAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
Done.