Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_650 ID=scaffold_650-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5256
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.32

Warning! 324 characters in sequence are not A, C, G, or T


Found at i:2043 original size:35 final size:35

Alignment explanation


    Indices: 1997--2068  Score: 144
    Period size: 35  Copynumber: 2.1  Consensus size: 35

       1987 ACTAAAATTC

                                               
       1997 AATTTAGTACCCAATGCCTCTTGTAATTTCTTCCA
          1 AATTTAGTACCCAATGCCTCTTGTAATTTCTTCCA

                                               
       2032 AATTTAGTACCCAATGCCTCTTGTAATTTCTTCCA
          1 AATTTAGTACCCAATGCCTCTTGTAATTTCTTCCA

              
       2067 AA
          1 AA

       2069 ACCTTGANNN


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   37  1.00

ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39


Consensus pattern (35 bp):   
AATTTAGTACCCAATGCCTCTTGTAATTTCTTCCA
Done.