Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_666 ID=scaffold_666-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4783
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31


Found at i:2036 original size:58 final size:60

Alignment explanation


    Indices: 1947--2058  Score: 147
    Period size: 59  Copynumber: 1.9  Consensus size: 60

       1937 TTTATTGTCC

                     *                             *                    
       1947 AATTTAGTATCCAAACTTGACACTTTTTTCTTAAATTGGTACTT-ATATTTTTTGGGTCT
          1 AATTTAGTACCCAAACTTGACACTTTTTTCTTAAATTGGCACTTAATATTTTTTGGGTCT

                           *  *  *            *            *      
       2006 AATTTAGTACCCAAATTTTACTC-TTTTTCTTAATTTGGCACTTAATCTTTTTT
          1 AATTTAGTACCCAAACTTGACACTTTTTTCTTAAATTGGCACTTAATATTTTTT

       2059 TTATCACGAG


Statistics
Matches: 45,  Mismatches: 7, Indels: 2
        0.83            0.13        0.04

Matches are distributed among these distances:
  58   18  0.40
  59   27  0.60

ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51


Consensus pattern (60 bp):   
AATTTAGTACCCAAACTTGACACTTTTTTCTTAAATTGGCACTTAATATTTTTTGGGTCT
Done.