Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_66 ID=scaffold_66-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23411
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.25

Warning! 5570 characters in sequence are not A, C, G, or T


Found at i:3207 original size:15 final size:15

Alignment explanation


    Indices: 3187--3218  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3177 TCACAAGCCC

                           
       3187 ATTATCTTCTCCATG
          1 ATTATCTTCTCCATG

                           
       3202 ATTATCTTCTCCATG
          1 ATTATCTTCTCCATG

              
       3217 AT
          1 AT

       3219 GATAACAGGA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.22, C:0.25, G:0.06, T:0.47


Consensus pattern (15 bp):   
ATTATCTTCTCCATG
Done.