Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_69 ID=scaffold_69-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  18098

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4577--4630
11
4.2
13
79
15
51
75
7
3
12
1.14
4583--4639
22
2.7
20
82
15
69
77
5
5
12
1.11
4589--4660
11
6.5
11
81
9
76
80
4
6
8
1.01
4625--4700
7
10.6
7
77
14
50
80
3
10
5
1.00
5596--5630
17
2.0
18
88
5
54
77
5
0
17
0.96
7116--7692
44
13.1
44
66
12
157
27
24
25
22
2.00
7110--7853
351
2.1
352
85
2
994
28
23
24
23
2.00
7087--7809
88
8.2
87
82
3
815
28
23
25
22
1.99
7945--8032
44
2.0
45
86
2
124
25
19
30
25
1.98
8063--8422
50
7.2
50
70
2
238
34
21
19
24
1.97
8033--8426
100
3.9
100
82
1
484
33
22
20
24
1.97
8063--8345
150
1.9
150
79
1
316
34
22
17
24
1.96
8030--8422
200
2.0
200
89
0
597
33
22
20
23
1.97
10063--10095
13
2.4
14
90
5
50
9
6
3
81
0.95
12569--12617
22
2.2
22
100
0
98
20
26
34
18
1.95
14063--14287
116
1.9
116
96
0
414
43
9
10
37
1.71
14293--14576
23
10.8
23
73
23
167
29
1
23
45
1.60
14303--14611
29
11.2
29
78
15
286
28
0
25
45
1.58
14303--14606
52
5.6
52
81
11
378
28
0
24
45
1.58
14459--14504
22
2.2
20
88
11
67
28
0
26
45
1.54
14414--14562
80
1.9
73
89
9
226
29
1
23
45
1.61
14628--14765
25
5.7
25
74
13
137
41
14
0
43
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15242--15276
18
1.9
18
94
0
61
34
8
31
25
1.86
15931--15962
7
4.6
7
100
0
64
59
12
0
28
1.34
17141--17195
22
2.5
22
93
3
92
40
0
34
25
1.56
17178--17212
10
3.2
11
88
12
54
45
0
37
17
1.48

Tables:   1

The End!