Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_694 ID=scaffold_694-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4565
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:1033 original size:10 final size:10

Alignment explanation


    Indices: 1018--1046  Score: 58
    Period size: 10  Copynumber: 2.9  Consensus size: 10

       1008 ATTTTTAGCT

                      
       1018 TTTATCTTTA
          1 TTTATCTTTA

                      
       1028 TTTATCTTTA
          1 TTTATCTTTA

                     
       1038 TTTATCTTT
          1 TTTATCTTT

       1047 TAGAATTTAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   19  1.00

ACGTcount: A:0.17, C:0.10, G:0.00, T:0.72


Consensus pattern (10 bp):   
TTTATCTTTA
Done.