Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_70 ID=scaffold_70-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82535
ACGTcount: A:0.06, C:0.05, G:0.04, T:0.06
Warning! 65408 characters in sequence are not A, C, G, or T
Found at i:242 original size:132 final size:132
Alignment explanation
Indices: 2--266 Score: 318
Period size: 132 Copynumber: 2.0 Consensus size: 132
1 A
* ** * * *
2 ACAGAATCTGCAATCTTCAACCGACTCTGCTATTGCTTAGGATGATAGGACTAATGGCTTAAATT
1 ACAGAATCTCCAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAATC
* * * * *
67 TGTTTCTCCACTGTATTGGGAAGATAAGATTCAATACCCTCGATCCG-GTGCACTACTGCTGAGG
66 TGCTTCTCCACTCTATTGGGAACATAAGATTCAACACCCTCGATCCGCG-CCACTACTGCTGAGG
131 GTG
130 GTG
** *
134 ACAGAATCTCCAATCTTCAACCTTCTCCACTACTGCTTAGGGT-ATTAGGACTAATGACTTAAAT
1 ACAGAATCTCCAATCTTCAACCGACTCCACTACTGCTTAGGATGA-TAGGACTAATGACTTAAAT
* * * * * *
198 CTGCTTCTGCACTCTATTGGGAACATAAGATTCACCATCTTCGATCTGCGCCACTACTGCTTAGG
65 CTGCTTCTCCACTCTATTGGGAACATAAGATTCAACACCCTCGATCCGCGCCACTACTGCTGAGG
263 GTG
130 GTG
266 A
1 A
267 TAGGATTAAT
Statistics
Matches: 111, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
131 1 0.01
132 109 0.98
133 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
ACAGAATCTCCAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAATC
TGCTTCTCCACTCTATTGGGAACATAAGATTCAACACCCTCGATCCGCGCCACTACTGCTGAGGG
TG
Found at i:314 original size:88 final size:88
Alignment explanation
Indices: 160--350 Score: 267
Period size: 88 Copynumber: 2.2 Consensus size: 88
150 TCAACCTTCT
* * *
160 CCACTACTGCTTAGGGTATTAGGACTAATGACTTAAATCTGCTTCTGCACTCTATTGGGAACATA
1 CCACTACTGCTTAGGGTATTAGGACTAATGACTTAAATATGCTTCTCCACTCTATTGGCAACATA
* *
225 AGATTCACCATCTTCGATCTGCG
66 AGATTCACAATCTTCGATCTACG
* * * * *
248 CCACTACTGCTTAGGGTGA-TAGGATTAATGGCTTAAATATGCTTCTCCACTGTATTTGCAAGAT
1 CCACTACTGCTTAGGGT-ATTAGGACTAATGACTTAAATATGCTTCTCCACTCTATTGGCAACAT
*
312 AAGATTCACAATCTTCGATCTACT
65 AAGATTCACAATCTTCGATCTACG
336 CCACTACTGCTTAGG
1 CCACTACTGCTTAGG
351 TGGACAGAAT
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
88 90 0.99
89 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (88 bp):
CCACTACTGCTTAGGGTATTAGGACTAATGACTTAAATATGCTTCTCCACTCTATTGGCAACATA
AGATTCACAATCTTCGATCTACG
Found at i:417 original size:220 final size:220
Alignment explanation
Indices: 35--486 Score: 613
Period size: 220 Copynumber: 2.1 Consensus size: 220
25 ACTCTGCTAT
* * * *
35 TGCTTAGGATGATAGGACTAATGGCTTAAATTTGTTTCTCCACTGTATTGGGAAGATAAGATTCA
1 TGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGCAAGATAAGATTCA
** * * * *
100 ATACCCTCGATCCGGTGCACTACTGCTGAGGGTGACAGAATCTCCAATCTTCAACCTTCTCCACT
66 ATACCCTCGATCCACTCCACTACTGCTGAGGGTGACAGAATCACCAATCTTCAACCTACTCCACC
* * *
165 ACTGCTTAGGGTATTAGGACTAATGACTTAAATCTGCTTCTGCACTCTATTGGGAACATAAGATT
131 ACTACTTAGGGTATTAGGACTAATGACTTAAATATGCTTCTCCACTCTATTGGGAACATAAGATT
*
230 CACCATCTTCGATCTGCGCCACTAC
196 CACCATCTTCGATCTCCGCCACTAC
* *
255 TGCTTAGGGTGATAGGATTAATGGCTTAAATATGCTTCTCCACTGTATTTGCAAGATAAGATTCA
1 TGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGCAAGATAAGATTCA
* * * * *
320 CA-ATCTTCGATCTACTCCACTACTGCTTA-GGTGGACAGAATCAGCAATCTTCAACCTACTCCA
66 -ATACCCTCGATCCACTCCACTACTGCTGAGGGT-GACAGAATCACCAATCTTCAACCTACTCCA
* * * *
383 CCACTACTTAGGGTGA-TAGGACTAATGGCTTAAATATGGTTCTCCACTGTATTGGGAAGATAAG
129 CCACTACTTAGGGT-ATTAGGACTAATGACTTAAATATGCTTCTCCACTCTATTGGGAACATAAG
* *
447 ATTCACCATCTTCGATCTCCTCCACTAT
193 ATTCACCATCTTCGATCTCCGCCACTAC
475 TGCTTAGGGTGA
1 TGCTTAGGGTGA
487 CAGAATCTGC
Statistics
Matches: 202, Mismatches: 27, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
219 3 0.01
220 197 0.98
221 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (220 bp):
TGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGCAAGATAAGATTCA
ATACCCTCGATCCACTCCACTACTGCTGAGGGTGACAGAATCACCAATCTTCAACCTACTCCACC
ACTACTTAGGGTATTAGGACTAATGACTTAAATATGCTTCTCCACTCTATTGGGAACATAAGATT
CACCATCTTCGATCTCCGCCACTAC
Found at i:471 original size:132 final size:132
Alignment explanation
Indices: 248--542 Score: 484
Period size: 132 Copynumber: 2.2 Consensus size: 132
238 TCGATCTGCG
* *
248 CCACTACTGCTTAGGGTGATAGGATTAATGGCTTAAATATGCTTCTCCACTGTATTTGCAAGATA
1 CCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGCAAGATA
313 AGATTCACAATCTTCGATCTACTCCACTACTGCTTA-GGTGGACAGAATCAGCAATCTTCAACCT
66 AGATTCACAATCTTCGATCTACTCCACTACTGCTTAGGGT-GACAGAATCAGCAATCTTCAACCT
377 ACT
130 ACT
* * * *
380 CCACCACTACTTAGGGTGATAGGACTAATGGCTTAAATATGGTTCTCCACTGTATTGGGAAGATA
1 CCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGCAAGATA
* * * *
445 AGATTCACCATCTTCGATCTCCTCCACTATTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
66 AGATTCACAATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCAGCAATCTTCAACCTA
510 CT
131 CT
512 CCACTACTGCTTAGGGTGATAGGACTAATGG
1 CCACTACTGCTTAGGGTGATAGGACTAATGG
543 NNNNNNNNNN
Statistics
Matches: 150, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
132 147 0.98
133 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (132 bp):
CCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGCAAGATA
AGATTCACAATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCAGCAATCTTCAACCTA
CT
Found at i:1911 original size:131 final size:132
Alignment explanation
Indices: 1570--2091 Score: 719
Period size: 132 Copynumber: 4.0 Consensus size: 132
1560 NNNNNNNNCG
* *
1570 ACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTTCTTCTCCACTGTATTGGGAAGATAAG
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAG
* * * * * * * *
1635 ATTTATCATATTCGGTCTGCTCCACTACTGTTTAAGGTGACAGAATCTGTAATCTTCAACCTACT
66 ATTCACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
1700 CC
131 CC
* * * * * * *
1702 ACTACTGCTTA-GGTAGATTGGACTAATGGCTTATATCTGCTGCTCCACTATTTTGAGAAGATAT
1 ACTACTGCTTAGGGT-GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
* *
1766 GATTCACCATCTTCGATCCGCTCCACTACTGCTTAGGGCGATAGAATCTGCAATCTTCAACCTAC
65 GATTCACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
1831 TCC
130 TCC
* *
1834 ACTACTG-TTAGGGTGATATGACTAATGGCTTAAATCTGTCTT-TCCACTGTATTGGGAAGCTAA
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTG-CTTCTCCACTGTATTGGGAAGATAA
* *
1897 GATTCACCATCTTCGATCTC-CTCCACCATTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
65 GATTCACCATCTTCGATC-CGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1961 CTCC
129 CTCC
* * * *
1965 ACCACTGCTTAGGGTGAGAGGACTAATGGCTTAAATCTGCTTCTCCACTCTATTGGGAAGACAAG
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAG
* *
2030 ATTCACCAATCTTCGATCTGCTCCACTACTGCTTCGGGTGACAGAATCTGCAATCTTCAACC
66 ATTCACC-ATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
2092 NNNNNNNNNN
Statistics
Matches: 340, Mismatches: 42, Indels: 15
0.86 0.11 0.04
Matches are distributed among these distances:
131 113 0.33
132 178 0.52
133 49 0.14
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (132 bp):
ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAG
ATTCACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
CC
Found at i:2086 original size:44 final size:44
Alignment explanation
Indices: 1905--2089 Score: 135
Period size: 44 Copynumber: 4.2 Consensus size: 44
1895 AAGATTCACC
* * *
1905 ATCTTCGATCTCCTCCACCATTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTGCTCCACCACTGCTTAGGGTGACAGAATCTGCA
* * * *
1949 ATCTTCAACCTACTCCACCACTGCTTAGGGTGAGAGGA-CT--A
1 ATCTTCAATCTGCTCCACCACTGCTTAGGGTGACAGAATCTGCA
* * * * * * **
1990 ATGGCTTAAATCTGCTTCTCCACT-CTATTGGGAAGACAAGATTCACCA
1 AT--CTTCAATCTGCTCCACCACTGCT-TAGGG-TGAC-AGAATCTGCA
* * *
2038 ATCTTCGATCTGCTCCACTACTGCTTCGGGTGACAGAATCTGCA
1 ATCTTCAATCTGCTCCACCACTGCTTAGGGTGACAGAATCTGCA
2082 ATCTTCAA
1 ATCTTCAA
2090 CCNNNNNNNN
Statistics
Matches: 104, Mismatches: 28, Indels: 18
0.69 0.19 0.12
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 21 0.20
44 48 0.46
45 5 0.05
46 20 0.19
47 2 0.02
48 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (44 bp):
ATCTTCAATCTGCTCCACCACTGCTTAGGGTGACAGAATCTGCA
Found at i:2553 original size:132 final size:133
Alignment explanation
Indices: 2316--3683 Score: 888
Period size: 132 Copynumber: 10.2 Consensus size: 133
2306 NNNNNNNNNN
* * * *
2316 CCACTACTGCTTAGGGTGACAGAATGTGCAATCTTCAACCTATTCAAGTACTGCTTAGGGTGATA
1 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
* *
2381 GGACTAATGGCTTAAATCTGCTTCTCCACTGTCTTGGGAAGATAAGATTCACCAT-TTTCGATCT
66 GGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTTCGATCT
2445 GCT
131 GCT
* *
2448 CCACTACTGCTTAGGGTGACAGAATCTGGAATCTTCAACCCACTCCACTACTGCTTAGGGTGATA
1 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
* * * * *
2513 GGACTAATGGCTGAAATCTAATTATCCACTATATTGGGAAGATAAGATTCACCATCTTTCGATCT
66 GGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTTCGATCT
2578 GCT
131 GCT
*
2581 CCACTACTGCTTAGGTTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA-GGTGATA
1 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
* * * * *
2645 GGACTAATGGCTTAAATTTGCTTCTCCACTGTATTTGTAAGATAAGATTCATCATATTT-GATCT
66 GGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTTCGATCT
2709 GCT
131 GCT
* * * * * *
2712 CCACTACTGTTTAGGGTGGCAGAATCTGTAATCTTCTACCTACTCCACTACTGCTTTGGGAGATA
1 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
* * * *
2777 GGTCTTATGGCTTAAATCTACTTCTCTACTGTATTGGGAAGATAAGATTCACCAT-CTTCGATCT
66 GGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTTCGATCT
*
2841 ACT
131 GCT
***********************************
2844 CCACTACTGCTTAGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CCACTACTGCTTAGGGT-------------GACAGAATCTGCAATCTTCAACCTACTCCACTACT
**************************************************** * *
2909 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAAGATTTAT
53 GCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCAC
*
2974 CATA-TTCGGTCTGCT
118 CATATTTCGATCTGCT
** * * *
2989 CCACTACTTTTTAAGGTGACAGAATATGTAATCTTCAACCTACTCCACTACTGCTTA-GGTAGAT
1 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT-GAT
* * * * * * * * *
3053 TGGACTAATGGCTTACATCTGCTGCTCCACTATTTTGAGAAGATATGATTCACCAT-CTTCGATC
65 AGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTTCGATC
*
3117 CGCT
130 TGCT
* * * * *
3121 CTACTACTGCTTAGGGCGATAGAATCTGCAATCTTCAACCTACTCTACTACTACTTAGGGTGATA
1 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
* * * *
3186 GGACTAATGGCTTACATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCAT-CTTCGATCT
66 GGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTTCGATCT
3250 GCT
131 GCT
**
3253 CCACTACTGCTTAGATTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
1 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
* * * *
3318 GGACTAATGGCTTAAATCTGCTTATCCACTATATTGGGAAGATAAGATTCACCAT-CTTCGATCT
66 GGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTTCGATCT
3382 GCT
131 GCT
* * * *
3385 CCACTACTGCTTAGGGTGACAGAATGTGCAATCTTCAACCTATTCAAGTACTGCTTAGGGTGATA
1 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
* * * *
3450 GGACTAATGGCTTAAATCTGCTTCTCCACTGTCTTGGGAAGATAAGATTTATCATA-TTCGATCT
66 GGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTTCGATCT
*
3514 ACT
131 GCT
* ** * ** *
3517 CCACTACTGTTTAGGGTGACAGAATCTATAATCTTCAGCCTACTCCACTACTGCGGAGGGGGATA
1 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
* * * * *** *** * *
3582 GGCCTAATAGCTGAGGGGAGGGA-GGGTCCACTATATTGGGAAGATAAGATTCACCAT-CTTCGA
66 GGACTAATGGCTTA---AATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTTCGA
3645 TCTGCT
128 TCTGCT
*
3651 CCACTACTGCTTAGGGTGACAGAATGTGCAATC
1 CCACTACTGCTTAGGGTGACAGAATCTGCAATC
3684 NNNNNNNNNN
Statistics
Matches: 911, Mismatches: 300, Indels: 48
0.72 0.24 0.04
Matches are distributed among these distances:
131 61 0.07
132 677 0.74
133 69 0.08
134 66 0.07
135 1 0.00
145 37 0.04
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.29
Consensus pattern (133 bp):
CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
GGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTTCGATCT
GCT
Found at i:4116 original size:44 final size:44
Alignment explanation
Indices: 4049--4553 Score: 191
Period size: 44 Copynumber: 11.5 Consensus size: 44
4039 CGATCTGCAT
*
4049 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA-CTGACTC
1 CACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCT-ACTC
* *
4093 CACTACTGCATAGGGTGATAGAATCTGCAATCTTTAACCTACTC
1 CACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTC
* * * * *
4137 CACTACTGCTTTGGGTGATAGGA-CT--AATGGCTTAAATCTACTT
1 CACTACTGCTTAGGGTGATAGAATCTGCAAT--CTTCAACCTACTC
* * * ** * * ** * *
4180 CTCCACTG-TATTGGGAAAATAAGATTC-GTCATTCTT-AGTCTTCTT
1 CACTACTGCT-TAGGG-TGAT-AGAATCTG-CAATCTTCAACCTACTC
* * *
4225 CACTACTGCTTAGGATGACAGAATCTGCAATCTTCAACCGACTC
1 CACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTC
* * * *
4269 CACTACTGCTTAGGGTGATATG-A-CT--AATGGCTTAAATCTGCTT
1 CACTACTGCTTAGGGTGATA-GAATCTGCAAT--CTTCAACCTACTC
* * * * * * * * * *
4312 CTCCACTG-TATTGGGAAGATAAGATTC-ACCATCTTCGATCTGCTC
1 CACTACTGCT-TAGGG-TGAT-AGAATCTGCAATCTTCAACCTACTC
* *
4357 CACTACTGCTTAGGGTGACAAAATCTGCAATCTTCAACCTACTC
1 CACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTC
* * * * * *
4401 CACTATTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTGCTT
1 CACTACTGCTTAGGGTGATAGAATCTGCAAT--CTTCAACCTACTC
* * * * ** * * * * *
4444 CTCCACTGTATTTGGAAGATAAGATTC-GCCATCTTCGATCTGCAT-
1 CACTACTG-CTTAGGGTGAT-AGAATCTGCAATCTTCAACCTAC-TC
* * * *
4489 CACTACTGGTTAGGGTGACAGAATCTGTAATCTTCAACCGACTC
1 CACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTC
4533 CACTACTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGATAG
4554 GACTAATGGC
Statistics
Matches: 330, Mismatches: 96, Indels: 70
0.67 0.19 0.14
Matches are distributed among these distances:
41 9 0.03
42 2 0.01
43 80 0.24
44 165 0.50
45 59 0.18
46 9 0.03
47 4 0.01
48 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (44 bp):
CACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTC
Found at i:4230 original size:176 final size:176
Alignment explanation
Indices: 3930--4288 Score: 531
Period size: 176 Copynumber: 2.0 Consensus size: 176
3920 NNNNGCTTAA
*
3930 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCATAGGGTGATAGGACTAATGACTTA
1 GGTGATAGAATCTGCAATCTTCAACCTACTCCACTACTGCATAGGGTGATAGGACTAATGACTTA
* * * ** *
3995 AATCTGCTTCTCCTCTGTATTGTGAGGATAAGATTCACCATATTCGATCTGCATCACTACTGCTT
66 AATCTACTTCTCCACTGTATTGGGAAAATAAGATTCACCATATTAGATCTGCATCACTACTGCTT
* *
4060 AGGGTGACAGAATCTGCAATCTTCAACTGACTCCACTACTGCATAG
131 AGGATGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCATAG
* * * *
4106 GGTGATAGAATCTGCAATCTTTAACCTACTCCACTACTGCTTTGGGTGATAGGACTAATGGCTTA
1 GGTGATAGAATCTGCAATCTTCAACCTACTCCACTACTGCATAGGGTGATAGGACTAATGACTTA
** * * *
4171 AATCTACTTCTCCACTGTATTGGGAAAATAAGATTCGTCATTCTTAG-TCTTCTTCACTACTGCT
66 AATCTACTTCTCCACTGTATTGGGAAAATAAGATTCACCA-TATTAGATCTGCATCACTACTGCT
*
4235 TAGGATGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAG
130 TAGGATGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCATAG
4282 GGTGATA
1 GGTGATA
4289 TGACTAATGG
Statistics
Matches: 163, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
176 159 0.98
177 4 0.02
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (176 bp):
GGTGATAGAATCTGCAATCTTCAACCTACTCCACTACTGCATAGGGTGATAGGACTAATGACTTA
AATCTACTTCTCCACTGTATTGGGAAAATAAGATTCACCATATTAGATCTGCATCACTACTGCTT
AGGATGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCATAG
Found at i:4334 original size:132 final size:132
Alignment explanation
Indices: 4090--5023 Score: 1116
Period size: 132 Copynumber: 6.9 Consensus size: 132
4080 CTTCAACTGA
* * * *
4090 CTCCACTACTGCATAGGGTGATAGAATCTGCAATCTTTAACCTACTCCACTACTGCTTTGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * ** *
4155 TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAAATAAGATTCGTCATTCTTAG-T
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA-TCTTCGAT
*
4219 CTT
130 CTG
* * *
4222 CTTCACTACTGCTTAGGATGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
4287 TATGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
4352 TG
131 TG
* *
4354 CTCCACTACTGCTTAGGGTGACAAAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
4419 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTTGGAAGATAAGATTCGCCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
4484 TG
131 TG
* * *
4486 CAT-CACTACTGGTTAGGGTGACAGAATCTGTAATCTTCAACCGACTCCACTACTGCTTAGGGTG
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * * *
4550 ATAGGACTAATGGCTGAAATCTACTTATCCACTATATTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
4615 CTA
130 CTG
* * * ** *
4618 CTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTATTCAAGAATTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * *
4683 TAGGACTAAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTTTATCATATTTCG
66 TAGGACT-AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGA-TTCACCAT-CTTCG
4748 ATCCTG
128 AT-CTG
* * ** *
4754 CTCCACTACTTGTTTAGGGGGACAGAATCTATAAATCTTCAACCTACTCCCACTACTCCTTAGGG
1 CTCCACTAC-TGCTTAGGGTGACAGAATCT-GCAATCTTCAACCTACT-CCACTACTGCTTAGGG
* *
4819 AGATAGGACTAATTGGCTTTAAATCTGCTTCCTCCTATTGTATTGGGAAAGATAAAGATTTCACC
63 TGATAGGACTAA-TGGC-TTAAATCTGCTT-CTCC-ACTGTATTGGG-AAGAT-AAGA-TTCA-C
*
4884 CATCTTTCGATCTA
120 CATC-TTCGATCTG
* * * * *
4898 CTCCGCTACTGCTTAGGGGTGACAAAAATCTGGAAATCTTTCAACCTATTCGACTACTTGCTTAA
1 CTCCACTACTGCTTA-GGGTGAC-AGAATCT-GCAATC-TTCAACCTACTCCACTAC-TGCTT-A
* * *
4963 GGGAGAATAGGGACTAATGGATTAAATCTTCCTTCCTCCACTGATATTGGGAAAGATAAGA
60 GGGTG-ATA-GGACTAATGGCTTAAATC-TGCTT-CTCCACTG-TATTGGG-AAGATAAGA
5024 ATTTANNNNN
Statistics
Matches: 693, Mismatches: 82, Indels: 39
0.85 0.10 0.05
Matches are distributed among these distances:
131 6 0.01
132 415 0.60
133 38 0.05
134 6 0.01
135 6 0.01
136 11 0.02
137 17 0.02
138 16 0.02
139 24 0.03
140 12 0.02
141 3 0.00
142 10 0.01
143 10 0.01
144 24 0.03
145 26 0.04
146 14 0.02
147 20 0.03
148 28 0.04
149 7 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
TG
Found at i:5688 original size:132 final size:132
Alignment explanation
Indices: 5451--6336 Score: 1359
Period size: 132 Copynumber: 6.7 Consensus size: 132
5441 NNNNNNNNNN
* * * * *
5451 TGATATGACTAATGGCTAAAATCTCCTTCTCCACTGTATTGGAAAGATAAGATTCACCACCTTCG
1 TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
* * * *
5516 ATCTGCTCCACTACTGCTTAGGGTGACAGAATCTCCAATCTTCAACCTACTCCACCACTACTTAA
66 ATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAG
5581 GG
131 GG
* * *
5583 TGATAGGACTAATGGTTTAAATCTGCTTCTCCACTGTCTTGGGAAGACAAGATTCACCATCTTCG
1 TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
*
5648 ATCTGCAT-CACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
66 ATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
5712 GGG
130 GGG
*
5715 TGATAGGACTAATGGCTTAAATCT-CTTTCGCCACTGTATTGGGAAGATAAGATTCACCATCTTC
1 TGATAGGACTAATGGCTTAAATCTGC-TTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
* * **
5779 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCCTCAACCCACTCCACTACTGCGAA
65 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
5844 GGG
130 GGG
5847 TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
1 TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
* * * *
5912 ATCTTCTCCACTACTGCTTAGGGTGACAAAATCTGCAATGTTCAACCTACTCCACTATTGCTTAG
66 ATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAG
5977 GG
131 GG
* *
5979 TGATAGGACTAATGGACTTAAATCTGCTTTTCCACTGTATTGGGAAAATAAGATTCACCATCTTC
1 TGATAGGACTAATGG-CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
* * *
6044 GATCTCCTCCACTATTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACCACTGCTTA
65 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
6109 GGG
130 GGG
* *
6112 TGATAGGACTAACGGCTTAAATCTGCTTCTCCACTGTATT-GGAAGACAAGATTCACCATCTTCG
1 TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
* *
6176 ATCTGCAT-CACTACTGGTTAGGGTCACAGAATCTGCAATCTTCAA-CTGACTCCACTACTGCTT
66 ATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTT
6239 AGGG
129 AGGG
* * *
6243 TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTTTATTTGGAAGATAAGATTCACAATCTTCG
1 TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
* * *
6308 ATCCGCTCCAATACTGGTTAGGGTGACAG
66 ATCTGCTCCACTACTGCTTAGGGTGACAG
6337 NNNNNNNNNN
Statistics
Matches: 690, Mismatches: 55, Indels: 18
0.90 0.07 0.02
Matches are distributed among these distances:
130 2 0.00
131 120 0.17
132 443 0.64
133 125 0.18
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (132 bp):
TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
ATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAG
GG
Found at i:13986 original size:132 final size:132
Alignment explanation
Indices: 13653--14546 Score: 1281
Period size: 132 Copynumber: 6.8 Consensus size: 132
13643 ACTATTTTGA
* * * * * *
13653 GAAGATATGATTCACCATCTACGATCCGCTCCGCTACT-ATTAGGGTGATAAGAATCTGCAATCT
1 GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGA-CAGAATCTGCAATCT
* * *
13717 ACGATCCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTACATCTGCTTCTCCACTGTA
65 TC-AACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
*
13782 TATGC
129 T-TGG
* * * *
13787 GAAGATAAGATTCACGATCTTCGATCTCCTTCACTATTGCTTAGGGTGACAGAATCTGCAATCTT
1 GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
*
13852 CAACCTACTCCACTACTGCTTAGGGTGATAGGGCTAATGGCTTAAATCTGCTTCTCCACTGTATT
66 CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
13917 GG
131 GG
*
13919 GAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
1 GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* * * * **
13984 CAACCTACTCCACTCCTGCCTAGGGAGATTGGACTAATGGCTTACGTCTGCTTCTCCAC--TATT
66 CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
14047 GTG
131 G-G
* * * * *
14050 AGAAGATATGATTCACCATCTTCGATCCGTTCCACTACTGTTTAGGGTGATAGAATCTGCAATCT
1 -GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCT
*
14115 TCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATTGCTTAAATCTGCTTCTCCACTGTAT
65 TCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
14180 TGG
130 TGG
* * * *
14183 AAAGATAACATTCACCATCTTCTATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTT
1 GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* *
14248 TAACCTACACCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
66 CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
14313 GG
131 GG
* * * *
14315 GAAGATGAGATTCACCATCTTAGATCTGTTCCACTACTGCTTAGGGTGACAGAATCTGAAATCTT
1 GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* * * *
14380 CAACCTACTCCAGTACTGCTTAAGGTGATAGGACTAATGGCTTAAATCTGTTTCTCCAATGTATT
66 CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
14445 GG
131 GG
* * *
14447 GAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTT
1 GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* * * *
14512 TAACATACTCCACTACTGCTGAGGGAGATAGGACT
66 CAACCTACTCCACTACTGCTTAGGGTGATAGGACT
14547 NNNNNNNNNN
Statistics
Matches: 677, Mismatches: 78, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
130 5 0.01
131 1 0.00
132 551 0.81
133 61 0.09
134 50 0.07
135 9 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
GG
Found at i:34259 original size:132 final size:132
Alignment explanation
Indices: 34009--35880 Score: 2656
Period size: 132 Copynumber: 14.2 Consensus size: 132
33999 NNNNNNNNNN
* * * *
34009 CCATCTTCGATCAGCTCCATTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTCCAGT
1 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
* * * *
34074 ACTGCTTAGGGTAATTGGACTAATGGTTTAAATCTCCTTCTCCACTGTATTGGGAAGATAAGATT
66 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATT
*
34139 TA
131 CA
* * * * * **
34141 TCATATTCGTTCTGCTCCACTACTGTTTAGGGCGACAGAATCTATAATCTTCAACCTACTCCACT
1 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
* * *
34206 ACTGCTTAGGGTGATAGGACTAATGACTTAAATCAGCTTCTCCACTGTATTGGGAAGATAACATT
66 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATT
34271 CA
131 CA
* * *
34273 CAATCTTTGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTGAACCTACTCCACT
1 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
* * *
34338 ACTGCTTAGGGAGATAGGACCAATGAG-TTAAATCCGCTTCTCCACTGTATTGGGAAGATAAGAT
66 ACTGCTTAGGGTGATAGGACTAATG-GCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
34402 TCA
130 TCA
* * * * * *
34405 CCATCTTCGATC-ACTATCACTACTGGTTAGGGTGAAAGAATCTGCAATCTTCAACCGACTCCGC
1 CCATCTTCGATCTGCT-CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC
* * *
34469 TATTGCTTAGGATGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
65 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
34534 TCA
130 TCA
*
34537 CCATCTTCGATCTGCTCCACTACTGCGTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC-CG
1 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC-
* *
34601 TACTGCTTAGGGTGATAGAACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGAT
65 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
34666 TCA
130 TCA
* * * *
34669 CCATCTTCGATCTGCTTCACTACTGCTTAGAGTGACAGAATCTGCAATCTTCAACCTACACCAGT
1 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
* * * *
34734 ACTGCTTTGGGTGAAAGGACTAATGGCTTAAATCTGCTTCTCTACTATATTGGGAAGATAAGATT
66 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATT
34799 CA
131 CA
*
34801 CCATCTTGGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
1 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
*
34866 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCATTGTATTGGGAAGATAAGATT
66 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATT
34931 CA
131 CA
* * * * * *
34933 TCATATTCGATCTGCTCCACTACTGTTTAGGGTGACTGAATCTGTAATCTTCAAGCTACTCCACT
1 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
* * * * * *
34998 ACTGCTTTGGGAGATAGGTCTAACGGCTTAAATCTGCTTCTCTACTGTATTGGGAGGATAAGATT
66 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATT
35063 CA
131 CA
* * * * ** *
35065 CCATCTTCGATCTACTCCATTACTGCTTAGGGTGACAAAATCTTCAGCCTTCAAACATACTCCAC
1 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTC-AACCTACTCCAC
* * * * * * * *
35130 TACTGCTTAGGGAGATTGAACTAATGGCTTACATCTGCTTCTCCACTATCTTGAGAAGATATGAT
65 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
35195 TCA
130 TCA
* * * * * * *
35198 CCATCTTCGGATATGCTGCACCACTGCTTAGAGTGACAAAATCTGCAATCTTGAACCTACTCCGC
1 CCATCTTC-GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC
* * *
35263 TACTGCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCACTGTATTGGGAAGATAACAT
65 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
35328 TCA
130 TCA
* * *
35331 CCATCTTCGATCTGCTCCACTACTGCTTAGAGTGACAGAATCTGTAATCTTGAACCTACTCCACT
1 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
* *
35396 ACTGCTTAGGGTGATAGGACCAATGACTTAAAT-TCGCTTCTCCACTGTATTGGGAAGATAAGAT
66 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCT-GCTTCTCCACTGTATTGGGAAGATAAGAT
35460 TCA
130 TCA
* * * *
35463 CCATCTTCGATCTCCAT-CACTACTGGTTAGGGTGACAGAATCTACAATCTTCAACCGACTCCAC
1 CCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC
*
35527 TACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
65 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
35592 TCA
130 TCA
* * * *
35595 CCATCTTCGATCTACTCCACTACTGCATAAGGTGACAGAATCTGCAAACTTCAACCTACTCCACT
1 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
* * *
35660 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGGAGAAAAGATT
66 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATT
35725 CA
131 CA
* * *
35727 TCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
1 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
* * * * * *
35792 ACTGCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCACTGTACTGGGCAGAAAACATT
66 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATT
35857 CA
131 CA
35859 CCATCTTCGATCTGCTCCACTA
1 CCATCTTCGATCTGCTCCACTA
35881 NNNNNNNNNN
Statistics
Matches: 1542, Mismatches: 186, Indels: 24
0.88 0.11 0.01
Matches are distributed among these distances:
131 6 0.00
132 1349 0.87
133 153 0.10
134 34 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATT
CA
Found at i:35804 original size:44 final size:43
Alignment explanation
Indices: 35480--35805 Score: 137
Period size: 44 Copynumber: 7.4 Consensus size: 43
35470 CGATCTCCAT
* *
35480 CACTACTGGTTAGGGTGACAGAATCTACAATCTTCAACCGACTC
1 CACTACTGCTTAGGGTGACAGAATCT-CAATCTTCAACCTACTC
* * * * * * *
35524 CACTACTGCTTAGGATGATAGGA-CT-AATGGCTTAAATCTGCTT
1 CACTACTGCTTAGGGTGACAGAATCTCAAT--CTTCAACCTACTC
* * * * * * * * * *
35567 CTCCACTG-TATTGGGAAGATAAGATTCACCATCTTCGATCTACTC
1 CACTACTGCT-TAGGG-TGA-CAGAATCTCAATCTTCAACCTACTC
* * *
35612 CACTACTGCATAAGGTGACAGAATCTGCAAACTTCAACCTACTC
1 CACTACTGCTTAGGGTGACAGAATCT-CAATCTTCAACCTACTC
* * * *
35656 CACTACTGCTTAGGGTGATAGGA-CT-AATGGCTTAAATCTGCTTCTC
1 CACTACTGCTTAGGGTGACAGAATCTCAAT--CTTCAA-C--CTACTC
* * * * * * * * *
35702 CACTA-T-ATTGGGGAGAAAAGATTCATC-ATATTCGATCTGCTC
1 CACTACTGCTTAGGGTG-ACAGAATC-TCAATCTTCAACCTACTC
*
35744 CACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCTACTC
1 CACTACTGCTTAGGGTGACAGAATCT-CAATCTTCAACCTACTC
35788 CACTACTGCTTAGGGTGA
1 CACTACTGCTTAGGGTGA
35806 TAGGACTAAT
Statistics
Matches: 196, Mismatches: 64, Indels: 44
0.64 0.21 0.14
Matches are distributed among these distances:
41 5 0.03
42 12 0.06
43 39 0.20
44 96 0.49
45 27 0.14
46 12 0.06
47 5 0.03
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (43 bp):
CACTACTGCTTAGGGTGACAGAATCTCAATCTTCAACCTACTC
Found at i:38002 original size:132 final size:132
Alignment explanation
Indices: 37760--39713 Score: 2577
Period size: 132 Copynumber: 14.8 Consensus size: 132
37750 NNNNNNNNNN
* * * *
37760 TCTGCAATCTTCAACCTATTCCAGTACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTGCTTC
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
* * * * *
37825 TCTACTGTTTTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAG
66 TCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAG
37890 AA
131 AA
* * * * *
37892 TCTGTAATCTTCAACCTACTCCACTATTGCTTTGGGAGATAGGTCTAACGGCTTAAATCTGCTTC
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
* * * * * * *
37957 TCTACTGTATTGGGAAGATAAGATTCACCATCTCCGATCTACTCCATTACTGCTTTGGGTGATAA
66 TCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAG
38022 AA
131 AA
* * * * * *
38024 TCTTCAATCTTCAACCTACTCCACTACTGCTTAGAGAGATTGAACTAATGGCTTACATCTGCTGC
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
* * * * * * * *
38089 TCCACTATCTTGAGAAGATATGATTCACCATCTTCGATCCGCTCCACAACTGCTTAGGGCGATAG
66 TCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAG
38154 AA
131 AA
*
38156 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTC
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
* *
38221 TCCACTGTATTGGGAAGATAAGATTCACCATCTTTGATCTCCAT-CACTACTAG-TTAGGGTGAC
66 TCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACT-GCTTAGGGTGAC
38284 AGAA
129 AGAA
* * *
38288 TCTGCAATCTTCAACCGACTCCACTACTGCTTA-GGATAATAGGAGTAATGGCTTAAATCTGCTT
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGA-GATAGGACTAATGGCTTAAATCTGCTT
* * *
38352 CTCCACCGTATAGGGAAGATAAGATTCACCAACTTCGATCTGCTCCACTACTGCTTAGGGTGACA
65 CTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACA
38417 GAA
130 GAA
* * *
38420 TCTGCAATCTTCAACCTACTTCC-GTACTGCTTAGGGTGAT-GCGACTAATGGATTAAATCTGCT
1 TCTGCAATCTTCAACCTAC-TCCACTACTGCTTAGGGAGATAG-GACTAATGGCTTAAATCTGCT
* * *
38483 TCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCAGCTTCACTACTGCTTAGGGTGAC
64 TCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGAC
38548 AGAA
129 AGAA
* * *
38552 TCTGCAATCTTCAACCTACACCAGTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTC
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
* * * *
38617 TCCACTATATTGGGAAGATAAGATTCACCATCTTGGATCTGTTCCACTACTGCTTAGGGTGATAG
66 TCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAG
38682 AA
131 AA
* *
38684 TCTGCAATCTTCAACCTACTCCACTACTGCATAGGGTGATAGGACTAACTGGGCCTTAAATCTGC
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAA-T-GG-CTTAAATCTGC
* * * * **
38749 TTCTCCACTATATTGGGAAGATAAGATTCATCATATTCGATCTGCTCAACTACTATTTAGGGTGA
63 TTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGA
38814 CAGAA
128 CAGAA
* * * * * *
38819 TCCGTAATCTTCATCCTACTCCACTACTACTTTGGGAGATAGGTCTAATGGCTTAAATCTGCTTC
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
* * *
38884 TCTACTGTATTGGGAAGATAAGATTGACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAG
66 TCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAG
38949 AA
131 AA
* * * *
38951 TCTGCACA-CTTCAACCTACTCCACTACTGCTTAGGGAGATTGAACTAAAGGCTTACATCTGCTT
1 TCTGCA-ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTT
* * * * * * * * * *
39015 CTCCACTATCTTGAGACGATATGATTCACCATCTTCGATATGCTGCACAACTACTTAGGGCGACA
65 CTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACA
*
39080 AAA
130 GAA
* * *
39083 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGGTAGGACTAATGACTTAAATCTGCTTC
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
*
39148 TCCACTGTATTGGGAAGATAACATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAG
66 TCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAG
39213 AA
131 AA
* * * * *
39215 TCTGTAATCTTGAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGACTTACATCCGCTTC
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
*
39280 TCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTCCATCC-CTACTTG-TTAGGGTGAC
66 TCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTAC-TGCTTAGGGTGAC
39343 AGAA
129 AGAA
* * * *
39347 TCTGCAATCTTCAACCGACTCCACTATTGCTTA-GGATGATAAGATTAATGGCTTAAATCTGCTT
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGA-GATAGGACTAATGGCTTAAATCTGCTT
* * * *
39411 CTCCACTGTATAGGGAAGATAATATTCACCAACTTTGATCTGCTCCACTACTGCTTAGGGTGACA
65 CTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACA
39476 GAA
130 GAA
39479 TCTGCAATCTTCAACCTACTCC-CGTACTGCTTAGGGAGATAGGACTAATGGC-TAAATCTGCTT
1 TCTGCAATCTTCAACCTACTCCAC-TACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTT
* * * ** *
39542 CTCCACTATATTGGGAAGATAATATTCACCATCTTCGATCTGCTTCTGTACTGCTTACGGTGACA
65 CTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACA
39607 GAA
130 GAA
* * * * *
39610 ACTGCAATCTTCAACCTACTCC-CTACTGCTTTGGGTGACA-GACTAATGCCTTAAAATCTGCTT
1 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTT-AAATCTGCTT
* * * *
39673 CTCCACTATATTGGGAAAATAAATATTCA-CATCTTGGATCT
65 CTCCACTGTATTGGGAAGAT-AAGATTCACCATCTTCGATCT
39714 TATTCCACTA
Statistics
Matches: 1597, Mismatches: 200, Indels: 51
0.86 0.11 0.03
Matches are distributed among these distances:
129 9 0.01
130 15 0.01
131 150 0.09
132 1287 0.81
133 20 0.01
134 3 0.00
135 113 0.07
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
TCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAG
AA
Found at i:38709 original size:44 final size:44
Alignment explanation
Indices: 38529--38725 Score: 129
Period size: 44 Copynumber: 4.5 Consensus size: 44
38519 CGATCAGCTT
* *
38529 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACAC
1 CACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTC
* * * *
38573 CAGTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTGCTTCTC
1 CACTACTGCTTAGGGTGATAGAATCTGCAAT--CTTCAA-C--CTACTC
* * * * * ** * **
38619 CACTA-T-ATT-GGGAAGATAAGATTC-ACCATCTTGGATCTGTTC
1 CACTACTGCTTAGGG-TGAT-AGAATCTGCAATCTTCAACCTACTC
38661 CACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTC
1 CACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTC
*
38705 CACTACTGCATAGGGTGATAG
1 CACTACTGCTTAGGGTGATAG
38726 GACTAACTGG
Statistics
Matches: 111, Mismatches: 28, Indels: 28
0.66 0.17 0.17
Matches are distributed among these distances:
41 3 0.03
42 9 0.08
43 16 0.14
44 62 0.56
45 10 0.09
46 9 0.08
47 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
CACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTC
Found at i:69982 original size:132 final size:132
Alignment explanation
Indices: 69743--70141 Score: 665
Period size: 132 Copynumber: 3.0 Consensus size: 132
69733 NNNNNNNNNN
* * * *
69743 TTAAATCTGCTTCTCCACTGTATAGGGAAGATAAGATTCACCAACTTCGATCTGCTCCACTACTA
1 TTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
*
69808 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCCGTACTGCTTAGGGTGATAGGACTAATG
66 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGATAGGACTAATG
69873 GC
131 GC
* *
69875 TTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTTACCATCTTCGATCTGCTTCACTACTG
1 TTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
*
69940 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGATAGGACTAGTG
66 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGATAGGACTAATG
70005 GC
131 GC
* * **
70007 TTAAATTTGCTTCTCCACTATATTGGGAAGATAAGATTCACCAT-TTGGATCTTATCCACTACTG
1 TTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
* *
70071 CTTAGGGTTACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
66 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGATAGGACTAATG
70136 GC
131 GC
70138 TTAA
1 TTAA
70142 NNNNNNNNNN
Statistics
Matches: 250, Mismatches: 17, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
131 84 0.34
132 166 0.66
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
TTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGATAGGACTAATG
GC
Found at i:70614 original size:132 final size:132
Alignment explanation
Indices: 70393--71395 Score: 1393
Period size: 132 Copynumber: 7.6 Consensus size: 132
70383 GAGAGATTGA
* * * * * *
70393 ACTAATGGCTTACATCTGCTTCTCCACTATCTTGAGAAAATATGATTCACCATCTTCGATCCGCT
1 ACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
* *
70458 GCACAACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
66 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
70523 GG
131 GG
* * * *
70525 ACTAATGACTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTCCA
1 ACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGC-
* * * * *
70590 T-CACTACTAG-TTAGGGTGATAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAGGATAA
65 TCCACTACT-GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
70653 TAGG
129 TAGG
* * * * * *
70657 AGTAATGGCTTAAATCTGCTTCTCCACTGTATAGCGAAGATAAGATTCACCAACTTTGATCTGCT
1 ACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
70722 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC-CGTACTGCTTAGGGTGAT
66 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC-TACTGCTTAGGGTGAT
70786 AGG
130 AGG
*
70789 ACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTTACCATCTTCGATCTGCT
1 ACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
*
70854 TCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
66 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
70919 GG
131 GG
* *
70921 ACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTGGATCTGAT
1 ACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
*
70986 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTACGGTGATA
66 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
71051 GG
131 GG
* * * * *
71053 ACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGGAAGATAAGATTCATCATATTTCGATTTG
1 ACTAATGGCTTAAATCTGCTTCTCCACTATATT-GGGAAGATAAGATTCACCAT-CTTCGATCTG
* * * * * *
71118 CTCCACTACTGTTTAGGGTGACTGAATCTGTAATCTTCAAGCTACTCCACTACTGCTTTGGGAGA
64 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
71183 TAGG
129 TAGG
* * * * * *
71187 TCTAACGGCTTAAATCTGCTTCTCTACTGTATTGGGAGGATAAGATTCACCATCTTCGATCTACT
1 ACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
* * * * * *
71252 CCATTACTGCTTAGGGTGACAAAATCTTCAATCTTCAACCTACTCCACTACTGCTTAGAGAGATT
66 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
*
71317 GA
131 GG
* * * * *
71319 ACTAATGGCTTACATCTGTTTCTCCACTATCTTGAGAA-ACTATGATTCACCATCTTCGATCTGC
1 ACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGA-TAAGATTCACCATCTTCGATCTGC
* *
71383 TGCACAACTGCTT
65 TCCACTACTGCTT
71396 NNNNNNNNNN
Statistics
Matches: 772, Mismatches: 90, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
131 4 0.01
132 631 0.82
133 40 0.05
134 97 0.13
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
ACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
GG
Found at i:70904 original size:44 final size:44
Alignment explanation
Indices: 70720--71048 Score: 150
Period size: 44 Copynumber: 7.5 Consensus size: 44
70710 CTTTGATCTG
70720 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* * * *
70764 CTCC-CGTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTGCTT
1 CTCCAC-TACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAA-C--CTA
* * * * * * * * *
70810 CTCCACTA-T-ATT-GGGAAGATA-AGATTTACCATCTTCGATCTG
1 CTCCACTACTGCTTAGGG-TGACAGA-ATCTGCAATCTTCAACCTA
*
70852 CTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* * * *
70896 CTCCACTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTGCTT
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAA-C--CTA
* * * * * * ** *
70942 CTCCACTA-T-ATT-GGGAAGATAAGATTC-ACCATCTTGGATCTGA
1 CTCCACTACTGCTTAGGG-TGA-CAGAATCTGCAATCTTCAACCT-A
70985 -TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
*
71028 CTCCACTACTGCTTACGGTGA
1 CTCCACTACTGCTTAGGGTGA
71049 TAGGACTAAT
Statistics
Matches: 205, Mismatches: 48, Indels: 64
0.65 0.15 0.20
Matches are distributed among these distances:
41 6 0.03
42 18 0.09
43 29 0.14
44 108 0.53
45 20 0.10
46 19 0.09
47 5 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
Found at i:73295 original size:44 final size:44
Alignment explanation
Indices: 73246--73435 Score: 131
Period size: 44 Copynumber: 4.3 Consensus size: 44
73236 CCGCTGCACA
73246 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
1 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
* * * * * * * *
73290 ACTGCTTAGGGTGATAGGA-CT--AATGACTTAAATCTGCTTCTCC
1 ACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACT
* * * * * * ** *
73333 ACTG-TATTGGGAAGATAAGATTC-ACCATCTTGGATCT-CATCCACT
1 ACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCTAC-TCCACT
73378 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
1 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
73422 ACTGCTTAGGGTGA
1 ACTGCTTAGGGTGA
73436 TAGGACTAAT
Statistics
Matches: 106, Mismatches: 28, Indels: 24
0.67 0.18 0.15
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 26 0.25
44 51 0.48
45 21 0.20
46 2 0.02
47 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
Found at i:73456 original size:132 final size:132
Alignment explanation
Indices: 73219--74415 Score: 1632
Period size: 132 Copynumber: 9.0 Consensus size: 132
73209 GAGAAATTAT
* * *
73219 GATTCACCATCTTCGATCCGCTGCACAACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
*
73284 TCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
66 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
73349 AA
131 AA
*
73351 GATTCACCATCTTGGATCT-CATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 GATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
73415 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
65 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
73480 TAA
130 TAA
* * * *
73483 GATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTAC
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
* * * * * * * *
73548 TCCACTATTACTTTGGGAGATAGGTCTAACGGCTTAAATTTGCTTCTCTACTGTATTGGGAAGAT
66 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
73613 AA
131 AA
* *
73615 GATTCACCATACTTCGATCTGCTCCATTACTGCTTAGGGTGACAGAATCTTCAATCTTCAACCTA
1 GATTCACCAT-CTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* * * * * * * * *
73680 CTCCACTACTGCTTAGAGAGATTGAACTAATGGCTTACATCTGCTTCTCCAGTATCTTGAGAA-A
65 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
*
73744 TTAT
130 -TAA
* * *
73748 GATTCACCATCTTCGATCCGCTGCACAACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
* * *
73813 TCCACTATTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGAGAAGAT
66 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
73878 AA
131 AA
* * * * *
73880 GATTCATCATATTTGATCTGCTCCACTACTGTTTTAGGGTGACAGAATCTGTAATCTTCAACCTA
1 GATTCACCATCTTCGATCTGCTCCACTACTG-CTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* * * * * *
73945 CTCCACTACTTGCCTTTA-GGAGATAGGTCTAACGGCTTAATTCTGCTTATCTACTGTATTGGGA
65 CTCCACTAC-TG-C-TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA
74009 AGATATA
127 AGATA-A
* * * *
74016 -ATTCACCATTTTCGATCTGGTCCACTAATG-TTGAGGGTGACAGAATCTGTAATCTTTCAACCT
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTT-AGGGTGACAGAATCTGCAATC-TTCAACCT
* * * *
74079 ACTCC-CGTACTGCTTAAGGTTATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGGAA
64 ACTCCAC-TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA
74143 GATAA
128 GATAA
* ** *
74148 GATTCACCATCTTCGATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGTGATCTTCATCCTAC
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
*
74213 TCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
66 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
74278 AA
131 AA
* * *
74280 GATTCACCATCTTGGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCGAC
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
* * * * * *
74345 TCCACTACAGATTAGGTTGAGAGGACTAATGGCTTATATTTGCTTCTCCACTGTATTGGGAAGAT
66 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
*
74410 AG
131 AA
74412 GATT
1 GATT
74416 NNNNNNNNNN
Statistics
Matches: 935, Mismatches: 113, Indels: 34
0.86 0.10 0.03
Matches are distributed among these distances:
131 1 0.00
132 575 0.61
133 242 0.26
134 28 0.03
135 85 0.09
136 4 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
AA
Found at i:73765 original size:265 final size:264
Alignment explanation
Indices: 73216--74415 Score: 1638
Period size: 265 Copynumber: 4.5 Consensus size: 264
73206 CTTGAGAAAT
* * *
73216 TATGATTCACCATCTTCGATCCGCTGCACAACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
1 TATGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
*
73281 TACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAA
66 TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA
* *
73346 GATAAGATTCACCATCTTGGATCT-CATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
131 GATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCA
*
73410 ACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG
195 ACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG
73475 GAAGA
260 GAAGA
* * * * *
73480 TAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACC
1 TATGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
* * * * * * * *
73545 TACTCCACTATTACTTTGGGAGATAGGTCTAACGGCTTAAATTTGCTTCTCTACTGTATTGGGAA
66 TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA
*
73610 GATAAGATTCACCATACTTCGATCTGCTCCATTACTGCTTAGGGTGACAGAATCT-TCAATCTTC
131 GATAAGATTCACCAT-CTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGT-AATCTTC
* * * * * * *
73674 AACCTACTCCACTACTGCTTAGAGAGATTGAACTAATGGCTTACATCTGCTTCTCCAGTATCTTG
194 AACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTG
*
73739 AGAA-A
259 GGAAGA
* * *
73744 TTATGATTCACCATCTTCGATCCGCTGCACAACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
1 -TATGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
* * *
73809 CTACTCCACTATTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGAGA
65 CTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA
* * * *
73874 AGATAAGATTCATCATATTTGATCTGCTCCACTACTGTTTTAGGGTGACAGAATCTGTAATCTTC
130 AGATAAGATTCACCATCTTCGATCTGCTCCACTACTG-CTTAGGGTGACAGAATCTGTAATCTTC
* * * * *
73939 AACCTACTCCACTACTTGCCTTTA-GGAGATAGGTCTAACGGCTTAATTCTGCTTATCTACTGTA
194 AACCTACTCCACTAC-TG-C-TTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
74003 TTGGGAAGA
256 TTGGGAAGA
* * * * *
74012 TATAATTCACCATTTTCGATCTGGTCCACTAATG-TTGAGGGTGACAGAATCTGTAATCTTTCAA
1 TATGATTCACCATCTTCGATCTGCTCCACTACTGCTT-AGGGTGACAGAATCTGCAATC-TTCAA
* * * *
74076 CCTACTCC-CGTACTGCTTAAGGTTATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAG
64 CCTACTCCAC-TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG
* *
74140 GAAGATAAGATTCACCATCTTCGATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGTGATCTT
128 GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTT
* * *
74205 CATCCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
193 CAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
74270 GGGAAGA
258 GGGAAGA
* * *
74277 TAAGATTCACCATCTTGGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACC
1 TATGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
* * * * * * *
74342 GACTCCACTACAGATTAGGTTGAGAGGACTAATGGCTTATATTTGCTTCTCCACTGTATTGGGAA
66 TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA
*
74407 GATAGGATT
131 GATAAGATT
74416 NNNNNNNNNN
Statistics
Matches: 807, Mismatches: 113, Indels: 32
0.85 0.12 0.03
Matches are distributed among these distances:
264 217 0.27
265 359 0.44
266 10 0.01
267 122 0.15
268 99 0.12
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (264 bp):
TATGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA
GATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAA
CCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGG
AAGA
Found at i:74193 original size:400 final size:396
Alignment explanation
Indices: 73219--74415 Score: 1684
Period size: 397 Copynumber: 3.0 Consensus size: 396
73209 GAGAAATTAT
* * *
73219 GATTCACCAT-CTTCGATCCGCTGCAC-AACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
1 GATTCACCATACTTCGATCTGCTCCACTAA-TGCTTAGGGTGACAGAATCTGTAATCTTCAACCT
* * *
73282 ACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAG
65 ACTCCACTACTGCTTAAGGT-ATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATT-GGAAG
*
73347 ATAAGATTCACCATCTTGGATCT-CATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
128 ATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
73411 CCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGG
192 CCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGG
73476 AAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTC
257 AAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTC
* *
73541 AACCTACTCCACTA-TTACTTTGGGAGATAGGTCTAACGGCTTAAATTTGCTTCTCTACTGTATT
322 AACCTACTCCACTACTTACTTTAGGAGATAGGTCTAACGGCTTAAATTTGCTTATCTACTGTATT
73605 GGGAAGATAA
387 GGGAAGATAA
* *
73615 GATTCACCATACTTCGATCTGCTCCATTACTGCTTAGGGTGACAGAATCT-TCAATCTTCAACCT
1 GATTCACCATACTTCGATCTGCTCCACTAATGCTTAGGGTGACAGAATCTGT-AATCTTCAACCT
* * * * *
73679 ACTCCACTACTGCTTAGAGAG-ATTGAACTAATGGCTTACATCTGCTTCTCCAGTATCTTGAGAA
65 ACTCCACTACTGCTTA-AG-GTATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTG-GAA
* * * *
73743 -ATTATGATTCACCATCTTCGATCCGCTGCACAACTGCTTAGGGTGACAGAATCTGCAATCTTCA
127 GA-TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
* * *
73807 ACCTACTCCACTATTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGA
191 ACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG
*
73872 GAAGATAAGATTCATCATATTTGATCTGCTCCACTACTGTTTTAGGGTGACAGAATCTGTAATCT
256 GAAGATAAGATTCATCATATTCGATCTGCTCCACTACTG-TTTAGGGTGACAGAATCTGTAATCT
*
73937 TCAACCTACTCCACTACTTGCCTTTAGGAGATAGGTCTAACGGCTT-AATTCTGCTTATCTACTG
320 TCAACCTACTCCACTACTT-ACTTTAGGAGATAGGTCTAACGGCTTAAATT-TGCTTATCTACTG
74001 TATTGGGAAGATATA
383 TATTGGGAAGATA-A
* *
74016 -ATTCACCAT-TTTCGATCTGGTCCACTAATG-TTGAGGGTGACAGAATCTGTAATCTTTCAACC
1 GATTCACCATACTTCGATCTGCTCCACTAATGCTT-AGGGTGACAGAATCTGTAATC-TTCAACC
74078 TACTCC-CGTACTGCTTAAGGTTATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGGA
64 TACTCCAC-TACTGCTTAAGG-TATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATT-GGA
* **
74142 AGATAAGATTCACCATCTTCGATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGTGATCTTCA
126 AGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
* *
74207 TCCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG
191 ACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG
* * * * **
74272 GAAGATAAGATTCACCATCTTGGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTT
256 GAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTT
* ** * * * * * * *
74337 CAACCGACTCCACTAC--AGATTAGGTTGAGAGGACTAATGGCTTATATTTGCTTCTCCACTGTA
321 CAACCTACTCCACTACTTACTTTAGG-AGATAGGTCTAACGGCTTAAATTTGCTTATCTACTGTA
*
74400 TTGGGAAGATAG
385 TTGGGAAGATAA
74412 GATT
1 GATT
74416 NNNNNNNNNN
Statistics
Matches: 714, Mismatches: 63, Indels: 47
0.87 0.08 0.06
Matches are distributed among these distances:
396 17 0.02
397 291 0.41
398 50 0.07
399 84 0.12
400 269 0.38
401 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (396 bp):
GATTCACCATACTTCGATCTGCTCCACTAATGCTTAGGGTGACAGAATCTGTAATCTTCAACCTA
CTCCACTACTGCTTAAGGTATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAGATA
AGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
TAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACC
TACTCCACTACTTACTTTAGGAGATAGGTCTAACGGCTTAAATTTGCTTATCTACTGTATTGGGA
AGATAA
Found at i:76836 original size:132 final size:131
Alignment explanation
Indices: 76591--79730 Score: 1534
Period size: 132 Copynumber: 23.9 Consensus size: 131
76581 CTTATCTCCT
* * * * *
76591 TCACTACTGCATAGGGTGACCGAATCTGTAATCTTCAACCGACTCCACTACTACTTAGGGAGATT
1 TCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATA
* *
76656 GGACTAATGGCTTAAATCAGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTA
66 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCTA
76721 C
131 C
* * *
76722 TCAACTACTGCTTTGGGCGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGAT
1 TC-ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * *
76787 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTTGGAAAGTCAGATTCACCATATTCGATCT
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
**
76852 GGT
130 -AC
* * * * * *
76855 TCACTACTGTTTAGGGTGACAGAATCTACAATCTTCAACCAATTCCACTA-TGGCTTAGAGAGAT
1 TCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-ACTTAGGGAGAT
* * ** **
76919 AGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCAAATTTAATCT
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
*
76984 GC
130 AC
* * * * *
76986 TTCACTATTGCATAGGGTGACAGAATCTACAATCTTCAACCGACTCCACTACTGCTTAGGGAGA-
1 -TCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * * * *
77050 ATGGATTAATGGCTTAAA-CTGCTCCTCCACTGTATT-TGAAAGGTAAGAGTCAGCATCTTCGAT
65 A-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAA-ATAAGATTCACCATCTTCGAT
77113 CTAC
128 CTAC
* *
77117 TCCACTATTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* *
77182 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCT
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
*
77247 GC
130 AC
* * * * *
77249 TTCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCAATTCCACTA-TGGCTTAGGGAGA
1 -TCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-ACTTAGGGAGA
* *
77313 TTGGACTAATTGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
64 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
77378 TAC
129 TAC
* * *
77381 TCCAATACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCTCTACTGCTTAGGGAGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * * * * ** * *
77446 TGGACTAGTGTCTCAAATCTGCTTCTCCACTATCTTAAGAAGATAAGGA-TCACCATCTTCGCTC
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAA-GATTCACCATCTTCGATC
**
77510 CGC
129 TAC
** *
77513 TCCACTACTGCTTAGGGTGACAGAATCTAAAATCTTCAACCTACTCCACTACTACTTAGGGTGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
*
77578 AGGACTAATGG-TTAAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCCATC
65 AGGACTAATGGCTT-AAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
77642 TAC
129 TAC
* * *
77645 TCCACTACTGCTTAGGGTGATAGAATCTGTAATCTTCAACCTACTCCGCTACTACTTAGGGAGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * ************
77710 AGGACTAATGGCATT-AATCTACTACTCCACTGTATTGGGAAGATAAGATTNNNNNNNNNNNNNN
65 AGGACTAATGGC-TTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATT--CACCATCTTCGA
*****
77774 NNNNN
127 TCTAC
*****************************************************************
77779 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 TCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATA
*****************************************************************
77844 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCTA
*
77909 N
131 C
************************ * * * *
77910 NNNNNNNNNNNNNNNNNNNNNNNNTCTGTAATCTTCAACCAATTCCACTA-TGGCTTAGGGAGAT
1 TCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-ACTTAGGGAGAT
77974 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
78039 AC
130 AC
* * *
78041 TCCAATACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCTCTACTGCTTAGGGAGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * * * * * *
78106 TGGACTAATGGCTCAAATCTGCTTCTCCACTATCTTGAGAAGATAAGAATCACCATCTTCGATCC
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
*
78171 GC
130 AC
** **
78173 TCCACTACTGCTTAGGGTGACAGAATCTAAAATCTTCAACCTACTCCACTACTACTTAGGCTGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* *
78238 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCT
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
*
78303 GC
130 AC
* * * *
78305 TTCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCCTAGGGAGAT
1 -TCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * * *
78370 TGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTCGGAAGATAGGATTCACCATCGTCGATCT
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
*
78435 GC
130 AC
* * *
78437 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTTGGGTGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * *
78502 AGGACTAATGGCTTAAATCTGCTTGTCCACTGTATT--G---CTTA-A-TCTCC-TC--C-A-CT
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
78555 AC
130 AC
* * * ** * * * * * ***
78557 TGCA-TA-GGGTGACCG-AATCTGTAATCTTCAA-C--CGACTCCACT--ACTACTTAGGGAGAT
1 T-CACTACTGCTTAGGGTGA-CAG-AATCTGCAATCTTCAAC-CTACTCCACTAC-TACTTAG--
* * ** ** * * * ** ** * *
78614 TGGA-CTAATGG-CTTAAATCAGC-T---TCT-CCACTGTATTGGGAAAATAAGATTCATCATAT
59 -GGAGAT-A-GGAC-T-AAT-GGCTTAAATCTGCTTCTCCACT--G-TATTGGGA-AAATAAGAT
* *
78672 TCGATC-TGCTTC-A-ATAC
114 TC-ACCAT-CTTCGATCTAC
*** * * * ** * * * * ** * *
78689 TGTTTA-GGGTGACAG-AATCTGCAATCTTCAA-C--CAA-CTCCAACA-TGGCTTAGGGATATA
1 TCACTACTGCTTAGGGTGA-CAG-AATCTGCAATCTTCAACCTACTCCACT-AC-TA---CT-TA
* * * ** * ** * ** *** * *
78747 -GGA-CTAATGACTTAAATCTGCTTCTCCA-CTG-TACTGGGA-AG-ATAAGGTTCATCATATTC
58 GGGAGAT-AGGAC-T-AAT-GGC-T-TAAATCTGCTTCT-CCACTGTATTGGGAAAATAAGATTC
* *
78806 GACC-TAC-TCCA-ATAC
116 -ACCAT-CTTCGATCTAC
* * * * * *
78821 -CGCT-CAG-----GGTGACAAAATCTGCAATCTTTAACCTACTCCCCTACTGCTTAGGGAGATA
1 TCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATA
* * * * * * *
78879 GGACTAATGGCTTTAATCTACTACTCCACTATACTGGGAAGATAAGATTCTCCATCTTCGATCTA
66 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCTA
78944 C
131 C
*
78945 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * * *
79010 AGGACTAATGGCTTAAATCTACTTCTCCACTGTGTTGGGAAAGTAAGATTCATCATATTCGATCT
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
*
79075 GC
130 AC
* * * * *
79077 TTCACAACT-ATATAGGGTGACAGAATCTGCAATCTTCAACCAATTCCACTA-TGGCTTAGGGAG
1 -TCACTACTGCT-TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-ACTTAGGGAG
* *
79140 ATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATGGGGAAAATAAGATTCACCATCTTCGAT
63 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGAT
79205 CTAC
128 CTAC
* * * *
79209 TCCACTACAGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGTGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
** *
79274 TTGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC-
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
79338 AGC
130 A-C
* *
79341 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGAGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * * *
79406 AGGACTAATGGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCGCCATATTCGACC
65 AGGACTAAT-GGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
*
79471 TGC
129 TAC
* *
79474 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * *
79539 TGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCACCTTCGATC-
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
79603 AGC
130 A-C
* * *
79606 TCCACTACTGCTTAGGGTTACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGAGAT
1 T-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * *
79671 TGGACTAATGGCTTAAATCTGCTTCTCCACTGTTTTTGGAAGATAAGATTCACCATCTTC
65 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTC
79731 AACCTACNNN
Statistics
Matches: 2300, Mismatches: 602, Indels: 213
0.74 0.19 0.07
Matches are distributed among these distances:
115 5 0.00
116 5 0.00
117 9 0.00
118 11 0.00
119 15 0.01
120 13 0.01
121 9 0.00
122 13 0.01
123 17 0.01
124 8 0.00
125 20 0.01
126 10 0.00
127 5 0.00
128 5 0.00
129 7 0.00
130 10 0.00
131 168 0.07
132 1816 0.79
133 142 0.06
134 2 0.00
135 2 0.00
136 1 0.00
137 5 0.00
138 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.29
Consensus pattern (131 bp):
TCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATA
GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCTA
C
Found at i:77062 original size:264 final size:264
Alignment explanation
Indices: 76592--79730 Score: 2505
Period size: 264 Copynumber: 12.0 Consensus size: 264
76582 TTATCTCCTT
* * * * *
76592 CACTACTGCATAGGGTGACCGAATCTGTAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAG
* * *
76657 GACTAATGGCTTAAATCAGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTAC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
* * * *
76722 -TCAACTACTGCTTTGGGCGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGA
131 TTC-ACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTACTTAGGGAGA
* * * *
76786 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTTGGAAAGTCAGATTCACCATATTCGATC
195 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
** *
76851 TGGTT
260 TACTC
* * * * * *
76856 CACTACTGTTTAGGGTGACAGAATCTACAATCTTCAACCAATTCCACTA-TGGCTTAGAGAGATA
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-ACTTAGGGAGATA
* * * * **
76920 GGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCAAATTTAATCTG
65 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTG
* * * *
76985 CTTCACTATTGCATAGGGTGACAGAATCTACAATCTTCAACCGACTCCACTACTGCTTAGGGAGA
130 CTTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTACTTAGGGAGA
* * * * * *
77050 -ATGGATTAATGGCTTAAA-CTGCTCCTCCACTGTATT-TGAAAGGTAAGAGTCAGCATCTTCGA
195 TA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAA-ATAAGATTCACCATCTTCGA
77112 TCTACTC
258 TCTACTC
* *
77119 CACTATTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAG
* *
77184 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
* ** * * *
77249 TTCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCAATTCCACTA-TGGCTTAGGGAGA
131 TTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACT-ACTTAGGGAGA
* *
77313 TTGGACTAATTGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
195 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
77378 TACTC
260 TACTC
* * * *
77383 CAATACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCTCTACTGCTTAGGGAGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAG
* * * * * ** * * *
77448 GACTAGTGTCTCAAATCTGCTTCTCCACTATCTTAAGAAGATAAGGA-TCACCATCTTCGCTCCG
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA-GATTCACCATATTCGATCTG
* * *
77512 CTCCACTACTGCTTAGGGTGACAGAATCTAAAATCTTCAACCTACTCCACTACTACTTAGGGTGA
130 CTTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTACTTAGGGAGA
*
77577 TAGGACTAATGG-TTAAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCCAT
195 TAGGACTAATGGCTT-AAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGAT
77641 CTACTC
259 CTACTC
* * *
77647 CACTACTGCTTAGGGTGATAGAATCTGTAATCTTCAACCTACTCCGCTACTACTTAGGGAGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAG
* * ****************
77712 GACTAATGGCATT-AATCTACTACTCCACTGTATTGGGAAGATAAGATTNNNNNNNNNNNNNNNN
66 GACTAATGGC-TTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTG
*****************************************************************
77776 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
130 CTTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTACTTAGGGAGA
*****************************************************************
77841 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
195 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
*****
77906 NNNNN
260 TACTC
*********************** * * * *
77911 NNNNNNNNNNNNNNNNNNNNNNNTCTGTAATCTTCAACCAATTCCACTA-TGGCTTAGGGAGATA
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-ACTTAGGGAGATA
* * *
77975 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCTA
65 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTG
* * * * *
78040 CTCCAATACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCTCTACTGCTTAGGGAGA
130 CTTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTACTTAGGGAGA
* * * * * * *
78105 TTGGACTAATGGCTCAAATCTGCTTCTCCACTATCTTGAGAAGATAAGAATCACCATCTTCGATC
195 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
**
78170 CGCTC
260 TACTC
** **
78175 CACTACTGCTTAGGGTGACAGAATCTAAAATCTTCAACCTACTCCACTACTACTTAGGCTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAG
* *
78240 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
* * * * *
78305 TTCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCCTAGGGAGAT
131 TTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * * *
78370 TGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTCGGAAGATAGGATTCACCATCGTCGATCT
196 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
*
78435 GCTC
261 ACTC
* * *
78439 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTTGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAG
* *
78504 GACTAATGGCTTAAATCTGCTTGTCCACTGTA-T-------T--GCTT----A-A-TC--TC--C
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
* * * ** *
78549 TCCACTACTGCATAGGGTGACCGAATCTGTAATCTTCAACCGACTCCACTACTACTTAGGGAGAT
131 TTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * *
78614 TGGACTAATGGCTTAAATCAGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCT
196 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
* *
78679 GCTT
261 ACTC
* * * * *
78683 CAATACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCA--ACATGGCTTAGGGATAT
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTAC-T-ACTTAGGGAGAT
* * * * *
78746 AGGACTAATGACTTAAATCTGCTTCTCCACTGTACTGGGAAGATAAGGTTCATCATATTCGACCT
64 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCT
* * * * * * * * * *
78811 ACTCCAATACCGCTCAGGGTGACAAAATCTGCAATCTTTAACCTACTCCCCTACTGCTTAGGGAG
129 GCTTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTACTTAGGGAG
* * * * * * *
78876 ATAGGACTAATGGCTTTAATCTACTACTCCACTATACTGGGAAGATAAGATTCTCCATCTTCGAT
194 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGAT
78941 CTACTC
259 CTACTC
*
78947 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAG
* * *
79012 GACTAATGGCTTAAATCTACTTCTCCACTGTGTTGGGAA-AGTAAGATTCATCATATTCGATCTG
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA-TAAGATTCACCATATTCGATCTG
* * * * * *
79076 CTTCACAACT-ATATAGGGTGACAGAATCTGCAATCTTCAACCAATTCCACTA-TGGCTTAGGGA
130 CTTCACTACTGCT-TAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACT-ACTTAGGGA
* *
79139 GATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATGGGGAAAATAAGATTCACCATCTTCGA
193 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGA
79204 TCTACTC
258 TCTACTC
* * * * **
79211 CACTACAGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTT
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAG
* *
79276 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCAGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
* * * *
79341 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGAGAT
131 TTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * * *
79406 AGGACTAATGGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCGCCATATTCGACC
196 AGGACTAAT-GGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
*
79471 TGCTC
260 TACTC
* * *
79476 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAG
** *
79541 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCACCTTCGATCAGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
* * * * *
79606 TCCACTACTGCTTAGGGTTACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGAGAT
131 TTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
* * * *
79671 TGGACTAATGGCTTAAATCTGCTTCTCCACTGTTTTTGGAAGATAAGATTCACCATCTTC
196 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTC
79731 AACCTACNNN
Statistics
Matches: 2216, Mismatches: 610, Indels: 98
0.76 0.21 0.03
Matches are distributed among these distances:
242 2 0.00
243 1 0.00
244 204 0.09
245 1 0.00
246 2 0.00
248 2 0.00
249 1 0.00
250 1 0.00
252 1 0.00
254 6 0.00
256 1 0.00
258 1 0.00
259 1 0.00
260 2 0.00
262 6 0.00
263 235 0.11
264 1481 0.67
265 266 0.12
266 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.29
Consensus pattern (264 bp):
CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAG
GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
TTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTACTTAGGGAGAT
AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
ACTC
Found at i:77663 original size:396 final size:396
Alignment explanation
Indices: 76592--79730 Score: 2712
Period size: 396 Copynumber: 8.0 Consensus size: 396
76582 TTATCTCCTT
* * *
76592 CACTACTGCATAGGGTGACCGAATCTGTAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
* * *
76657 GACTAATGGCTTAAATCAGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTAC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
* * * *
76722 TCAACTACTGCTTTGGGCGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGAT
131 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGAT
* * * *
76787 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTTGGAAAGTCAGATTCACCATATTCGATCT
196 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
** * * * * * *
76852 GGTTCACTACTGTTTAGGGTGACAGAATCTACAATCTTCAACCAATTCCACTA-TGGCTTAGAGA
261 ACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGA
* * * ** **
76916 GATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCAAATTTAA
325 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
* *
76981 TCTGCTT
390 TCTACTC
* * * * *
76988 CACTATTGCATAGGGTGACAGAATCTACAATCTTCAACCGACTCCACTACTGCTTAGGGAGAATG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
* * * * * * * * *
77053 GATTAATGGCTTAAA-CTGCTCCTCCACTGTATTTGAAAGGTAAGAGTCAGCATCTTCGATCTAC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
* *
77117 TCCACTATTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGAT
131 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGAT
* *
77182 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCT
196 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
* * * * * *
77247 GCTTCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCAATTCCACTA-TGGCTTAGGGA
261 ACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGA
* * *
77311 GATTGGACTAATTGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGA
325 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
77376 TCTACTC
390 TCTACTC
* * * *
77383 CAATACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCTCTACTGCTTAGGGAGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
* * * * * ** * * *
77448 GACTAGTGTCTCAAATCTGCTTCTCCACTATCTTAAGAAGATAAGGA-TCACCATCTTCGCTCCG
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA-GATTCACCATATTCGATCTG
** *
77512 CTCCACTACTGCTTAGGGTGACAGAATCTAAAATCTTCAACCTACTCCACTACTACTTAGGGTGA
130 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
77577 TAGGACTAATGG-TTAAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCCAT
195 TAGGACTAATGGCTT-AAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGAT
* * * *
77641 CTACTCCACTACTGCTTAGGGTGATAGAATCTGTAATCTTCAACCTACTCCGCTACTACTTAGGG
259 CTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG
* * **********
77706 AGATAGGACTAATGGCATT-AATCTACTACTCCACTGTATTGGGAAGATAAGATTNNNNNNNNNN
324 AGATAGGACTAATGGC-TTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
*********
77770 NNNNNNNNN
388 GATCTACTC
*****************************************************************
77779 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
*****************************************************************
77844 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
************************* * * * *
77909 NNNNNNNNNNNNNNNNNNNNNNNNNTCTGTAATCTTCAACCAATTCCACTA-TGGCTTAGGGAGA
131 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGA
77973 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
195 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
* *
78038 TACTCCAATACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCTCTACTGCTTAGGGA
260 TACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGA
* * * * * *
78103 GATTGGACTAATGGCTCAAATCTGCTTCTCCACTATCTTGAGAAGATAAGAATCACCATCTTCGA
325 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
**
78168 TCCGCTC
390 TCTACTC
** * ** *
78175 CACTACTGCTTAGGGTGACAGAATCTAAAATCTTCAACCTACTCCACTACTACTTAGGCTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
* *
78240 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
* * * * *
78305 TTCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCCTAGGGAGAT
131 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGAT
* * * * *
78370 TGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTCGGAAGATAGGATTCACCATCGTCGATCT
196 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
* * *
78435 GCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTTGGGTG
261 ACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAG
* *
78500 ATAGGACTAATGGCTTAAATCTGCTTGTCCACTGTA-T-------T--GCTT-A--A---TC--T
326 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
78547 C--CTC
391 CTACTC
* * *
78551 CACTACTGCATAGGGTGACCGAATCTGTAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
* * *
78616 GACTAATGGCTTAAATCAGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
* * * *
78681 TTCAATACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCA--ACATGGCTTAGGGAT
131 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTAC-T-GCTTAGGG-T
* * * * * *
78744 -ATAGGACTAATGACTTAAATCTGCTTCTCCACTGTACTGGGAAGATAAGGTTCATCATATTCGA
193 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGA
* * * * * * *
78808 CCTACTCCAATACCGCTCAGGGTGACAAAATCTGCAATCTTTAACCTACTCCCCTACTGCTTAGG
258 TCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
* * * * * *
78873 GAGATAGGACTAATGGCTTTAATCTACTACTCCACTATACTGGGAAGATAAGATTCTCCATCTTC
323 GAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
78938 GATCTACTC
388 GATCTACTC
* * *
78947 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
* * *
79012 GACTAATGGCTTAAATCTACTTCTCCACTGTGTTGGGAA-AGTAAGATTCATCATATTCGATCTG
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA-TAAGATTCACCATATTCGATCTG
* * * * * *
79076 CTTCACAACT-ATATAGGGTGACAGAATCTGCAATCTTCAACCAATTCCACTA-TGGCTTAGGGA
130 CTCCACTACTGCT-TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGT
* *
79139 GATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATGGGGAAAATAAGATTCACCATCTTCGA
193 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGA
* *
79204 TCTACTCCACTACAGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGG
258 TCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
* **
79269 GTGATTTGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
323 GAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
79334 GATC-AGCTC
388 GATCTA-CTC
* *
79343 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGAGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
* * *
79408 GACTAATGGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCGCCATATTCGACCTG
66 GACTAAT-GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTG
79473 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
130 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * *
79538 TTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCACCTTCGATC
195 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATC
* *
79603 -AGCTCCACTACTGCTTAGGGTTACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGG
260 TA-CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG
* * *
79667 AGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTTTTTGGAAGATAAGATTCACCATCTTC
324 AGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
79731 AACCTACNNN
Statistics
Matches: 2128, Mismatches: 571, Indels: 87
0.76 0.20 0.03
Matches are distributed among these distances:
374 2 0.00
375 1 0.00
376 321 0.15
377 1 0.00
378 2 0.00
380 2 0.00
383 1 0.00
384 1 0.00
385 1 0.00
386 5 0.00
388 1 0.00
389 1 0.00
392 2 0.00
394 2 0.00
395 363 0.17
396 1128 0.53
397 290 0.14
398 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.29
Consensus pattern (396 bp):
CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAGGGAGATTG
GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGC
TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGAT
AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
ACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAG
ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
CTACTC
Found at i:78643 original size:112 final size:112
Alignment explanation
Indices: 78431--78650 Score: 341
Period size: 112 Copynumber: 2.0 Consensus size: 112
78421 ACCATCGTCG
* * * * *
78431 ATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTTG
1 ATCTCCTCCACTACTGCATAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAG
* * *
78496 GGTGATAGGACTAATGGCTTAAATCTGCTTGTCCACTGTATTGCTTA
66 GGAGATAGGACTAATGGCTTAAATCAGCTTCTCCACTGTATTGCTTA
* *
78543 ATCTCCTCCACTACTGCATAGGGTGACCGAATCTGTAATCTTCAACCGACTCCACTACTACTTAG
1 ATCTCCTCCACTACTGCATAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAG
*
78608 GGAGATTGGACTAATGGCTTAAATCAGCTTCTCCACTGTATTG
66 GGAGATAGGACTAATGGCTTAAATCAGCTTCTCCACTGTATTG
78651 GGAAAATAAG
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
112 97 1.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (112 bp):
ATCTCCTCCACTACTGCATAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTACTTAG
GGAGATAGGACTAATGGCTTAAATCAGCTTCTCCACTGTATTGCTTA
Found at i:78989 original size:44 final size:43
Alignment explanation
Indices: 78807--79008 Score: 126
Period size: 44 Copynumber: 4.6 Consensus size: 43
78797 ATCATATTCG
* * * * *
78807 ACCTACTCCAATACCGCTCAGGGTGACAAAATCTGCAATCTTTA
1 ACCTACTCCACTACTGCTTAGGGTGACAGAATCT-CAATCTTCA
* * * * *
78851 ACCTACTCCCCTACTGCTTAGGGAGATAGGA-CT-AATGGCTTTA
1 ACCTACTCCACTACTGCTTAGGGTGACAGAATCTCAAT--CTTCA
* * * * * *
78894 ATCTACTACTCCACTA-TAC-T-GGGAAGATAAGATTCTCCATCTTCG
1 A-C--CTACTCCACTACTGCTTAGGG-TGA-CAGAATCTCAATCTTCA
*
78939 ATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
1 ACCTACTCCACTACTGCTTAGGGTGACAGAATCT-CAATCTTCA
*
78983 ACCTACTCCACTACTACTTAGGGTGA
1 ACCTACTCCACTACTGCTTAGGGTGA
79009 TAGGACTAAT
Statistics
Matches: 120, Mismatches: 25, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
41 3 0.03
42 11 0.09
43 19 0.16
44 62 0.52
45 11 0.09
46 12 0.10
47 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (43 bp):
ACCTACTCCACTACTGCTTAGGGTGACAGAATCTCAATCTTCA
Found at i:79391 original size:44 final size:44
Alignment explanation
Indices: 79340--79537 Score: 133
Period size: 44 Copynumber: 4.5 Consensus size: 44
79330 CTTCGATCAG
79340 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGA
* * * * **
79384 CTCCACTACTGCTTAGGGAGATAGGA-CT--AATGGGCTTAAATCTGCTT
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT---CTTCAA-C--CGA
* * * * * * *
79431 CTCCACTA-T-ATT-GGGAAGATAAGATTC-GCCATATTCGACCTG-
1 CTCCACTACTGCTTAGGG-TGA-CAGAATCTGCAATCTTCAACC-GA
*
79473 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGA
79517 CTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
79538 TTGGACTAAT
Statistics
Matches: 114, Mismatches: 23, Indels: 34
0.67 0.13 0.20
Matches are distributed among these distances:
41 3 0.03
42 9 0.08
43 8 0.07
44 67 0.59
45 12 0.11
46 3 0.03
47 10 0.09
48 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGA
Found at i:80461 original size:135 final size:132
Alignment explanation
Indices: 80152--80536 Score: 617
Period size: 135 Copynumber: 2.9 Consensus size: 132
80142 NNNNNNGGGA
* *
80152 GATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGA
1 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
* * *
80217 TCTACTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGG
66 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
80282 GT
131 GT
* *
80284 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATATTCGA
1 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
* *
80349 TCTGCTCCACCACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACCTACCGACTACTGCTT
66 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA-CT-CC-ACTACTGCTT
80414 AGGGT
128 AGGGT
*
80419 GATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
1 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
* * * *
80484 TCAGCTCCACTACTGCTTAGGGTTACGGAATCTGCAATCTTCAACCGACTCCA
66 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCA
80537 NNNNNNNNNN
Statistics
Matches: 232, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
132 105 0.45
133 4 0.02
134 4 0.02
135 119 0.51
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (132 bp):
GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
GT
Found at i:80909 original size:132 final size:132
Alignment explanation
Indices: 80668--81256 Score: 765
Period size: 132 Copynumber: 4.5 Consensus size: 132
80658 NNNNNNNNNA
* * **
80668 CCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTT-CACTACTATTTAGGGTGACAG
1 CCACTGTATTGGGAAAATAAGATTCACCATATTCGATCT-ATTCCACTACTGCTTAGGGTGACAG
*
80732 AATCTGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCT
65 AATCTGCAATCTTCAACCAACTCCACTATGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCT
80797 TCT
130 TCT
* * * * *
80800 CCAGTGTATTGGTAAAATAAGATTAACCATCTTCGATCTATTCCAAC-ACTGCTTAGGGTGATAG
1 CCACTGTATTGGGAAAATAAGATTCACCATATTCGATCTATTCC-ACTACTGCTTAGGGTGACAG
* * * * * * *
80864 AATGTGTAATCTTCAACCTACTCCACTACT-ACTTAGGGCGATAGGACTAATGGCTCAAATCTAC
65 AATCTGCAATCTTCAACCAACTCCACTA-TGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGC
80928 TTCT
129 TTCT
* * * *
80932 CCACTGTATTGGGAAAGTAAGATTCATCATATTCGATCTGCTT-CACTACTGTTTAGGGTGACAG
1 CCACTGTATTGGGAAAATAAGATTCACCATATTCGATCT-ATTCCACTACTGCTTAGGGTGACAG
* * * *
80996 AATATGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCATAAATCTGCT
65 AATCTGCAATCTTCAACCAACTCCACTATGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCT
81061 TCT
130 TCT
* * * *
81064 CCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCTACTCCACTACAGCTTAGTGTGACAGA
1 CCACTGTATTGGGAAAATAAGATTCACCATATTCGATCTATTCCACTACTGCTTAGGGTGACAGA
* * *
81129 ATCTGCAATCTTCAGCCTACTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTTAAATCTGCT
66 ATCTGCAATCTTCAACCAACTCCACTA-TGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCT
81193 TCT
130 TCT
* * * **
81196 CCACTATATTGGGAAGATAAGATTAACCATATTCGATCTGCTCCACTACTGCTTAGGGTGA
1 CCACTGTATTGGGAAAATAAGATTCACCATATTCGATCTATTCCACTACTGCTTAGGGTGA
81257 TTGGACTAAT
Statistics
Matches: 391, Mismatches: 58, Indels: 16
0.84 0.12 0.03
Matches are distributed among these distances:
131 6 0.02
132 379 0.97
133 6 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (132 bp):
CCACTGTATTGGGAAAATAAGATTCACCATATTCGATCTATTCCACTACTGCTTAGGGTGACAGA
ATCTGCAATCTTCAACCAACTCCACTATGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTT
CT
Found at i:81006 original size:264 final size:264
Alignment explanation
Indices: 80668--81256 Score: 930
Period size: 264 Copynumber: 2.2 Consensus size: 264
80658 NNNNNNNNNA
* *
80668 CCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTATTTAGGGTGACAGA
1 CCACTGTATTGGGAAAGTAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAGA
* * *
80733 ATCTGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTT
66 ATATGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCATAAATCTGCTT
* * * * *
80798 CTCCAGTGTATTGGTAAAATAAGATTAACCATCTTCGATCTATTCCAAC-ACTGCTTAGGGTGAT
131 CTCCACTGTATTGGGAAAATAAGATTAACCATCTTCGATCTACTCC-ACTACAGCTTAGGGTGAC
* *
80862 AGAATGTGTAATCTTCAACCTACTCCACTACTACTTAGGGCGATAGGACTAATGGCTCAAATCTA
195 AGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGCGATAGGACTAATGGCTCAAATCTA
80927 CTTCT
260 CTTCT
80932 CCACTGTATTGGGAAAGTAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAGA
1 CCACTGTATTGGGAAAGTAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAGA
80997 ATATGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCATAAATCTGCTT
66 ATATGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCATAAATCTGCTT
* *
81062 CTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCTACTCCACTACAGCTTAGTGTGACA
131 CTCCACTGTATTGGGAAAATAAGATTAACCATCTTCGATCTACTCCACTACAGCTTAGGGTGACA
* * * * *
81127 GAATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGC
196 GAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGCGATAGGACTAATGGCTCAAATCTAC
81192 TTCT
261 TTCT
* * * * *
81196 CCACTATATTGGG-AAGATAAGATTAACCATATTCGATCTGCTCCACTACTGCTTAGGGTGA
1 CCACTGTATTGGGAAAG-TAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGA
81257 TTGGACTAAT
Statistics
Matches: 299, Mismatches: 24, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
263 5 0.02
264 294 0.98
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (264 bp):
CCACTGTATTGGGAAAGTAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAGA
ATATGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCATAAATCTGCTT
CTCCACTGTATTGGGAAAATAAGATTAACCATCTTCGATCTACTCCACTACAGCTTAGGGTGACA
GAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGCGATAGGACTAATGGCTCAAATCTAC
TTCT
Found at i:81292 original size:220 final size:220
Alignment explanation
Indices: 81017--81476 Score: 733
Period size: 220 Copynumber: 2.1 Consensus size: 220
81007 TTCAACCAAT
*
81017 TCCACTA-TGGCTTAGGGAGATAGGACAAATGGCATAAATCTGCTTCTCCACTGTATTGGGAAAA
1 TCCACTACT-GCTTAGGGTGATAGGACAAATGGCATAAATCTGCTTCTCCACTGTATTGGGAAAA
* * *
81081 TAAGATTCACCATCTTCGATCTACTCCACTACAGCTTAGTGTGACAGAATCTGCAATCTTCAGCC
65 TAAGATTCACCATCTTCGATCAACTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCAACC
81146 TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAA
130 TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAA
81211 GATAAGATTAACCATATTCGATCTGC
195 GATAAGATTAACCATATTCGATCTGC
* * * *
81237 TCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACAAATGGCATAAATCTGCTTCTCCACTGTATTGGGAAAAT
* * * *
81302 AAGATTCACCATGTTCGATCAACTCCACTACTGCTTGGGGTGACAGAATCTGCATTCTTCAACCT
66 AAGATTCACCATCTTCGATCAACTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
* * *
81367 TCTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
131 ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAG
* * *
81432 ATAAGATTCATCATCTTCGATCTGC
196 ATAAGATTAACCATATTCGATCTGC
*
81457 TCCACTACAGCTTAGGGTGA
1 TCCACTACTGCTTAGGGTGA
81477 CAGATTCTTG
Statistics
Matches: 220, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
220 219 1.00
221 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (220 bp):
TCCACTACTGCTTAGGGTGATAGGACAAATGGCATAAATCTGCTTCTCCACTGTATTGGGAAAAT
AAGATTCACCATCTTCGATCAACTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAG
ATAAGATTAACCATATTCGATCTGC
Found at i:81297 original size:88 final size:88
Alignment explanation
Indices: 81147--81344 Score: 333
Period size: 88 Copynumber: 2.2 Consensus size: 88
81137 TCTTCAGCCT
81147 ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAG
1 ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAG
*
81212 ATAAGATTAACCATATTCGATCT
66 ATAAGATTAACCATATTCGATCA
* * *
81235 GCTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
1 ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAG
* *
81300 ATAAGATTCACCATGTTCGATCA
66 ATAAGATTAACCATATTCGATCA
*
81323 ACTCCACTACTGCTTGGGGTGA
1 ACTCCACTACTGCTTAGGGTGA
81345 CAGAATCTGC
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 102 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (88 bp):
ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAG
ATAAGATTAACCATATTCGATCA
Found at i:81340 original size:132 final size:132
Alignment explanation
Indices: 81236--82401 Score: 1593
Period size: 132 Copynumber: 8.8 Consensus size: 132
81226 ATTCGATCTG
*
81236 CTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* ** * *
81301 TAAGATTCACCATGTTCGATCAACTCCACTACTGCTTGGGGTGACAGAATCTGCATTCTTCAACC
66 TAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
*
81366 TT
131 TA
*
81368 CTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * * *
81433 TAAGATTCATCATCTTCGATCTGCTCCACTACAGCTTAGGGTGACAGATTCTTG-AATCTTCGAC
66 TAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC-TGCAATCTTCAAC
*
81497 CGA
130 CTA
* * * *
81500 CTCCACTACTGCTTAGGGAGATTGGACTAATAGCTTAAATCTGCTTCTCCACTGTAATGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* *
81565 TAAGATTCACCATCTTCGATCAGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
81630 TA
131 TA
* *
81632 CTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCATCTCCACTGTATTGGGAA-A
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * *
81696 GTAAGATTCATCATATTCGATCTGCTTCACTATTGTTTAGGGTGACAGAATCTGCAATCTTCAAC
66 -TAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
*
81761 CAA
130 CTA
* * * * * *
81764 TTCCACTA-TGGCTTAGGGAGATAGGACAAATGGCTTAAATCTCCTTGTCAACTGTATTGGGGAA
1 CTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT-GGGAA
* * * * *
81828 AATAAGATTCACCATCTTCGATCTACTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCAG
64 GATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
81893 CCTA
129 CCTA
*
81897 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
*
81962 TAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGCGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
82027 TA
131 TA
* * * * * *
82029 TTCCAGTACTGCTATTGGGAGAGAAGGACTAATGGCATTAAATCTGCTTCTCCTACTATATTGGG
1 CTCCACTACTGCT-TAGGGTGA-TAGGACTAATGGC-TTAAATCTGCTTCTCC-ACTGTATTGGG
* * *
82094 AAGATAAGATTCACCATATTGGATCTGCTCCACTACTGTTTAGGGGGACAGAATCTGCAATCTTC
62 AAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTC
82159 AACCTA
127 AACCTA
* * *
82165 CTCCACTACCGCTTAGGGTGATAGGACTAATGGCTCAAATCTGCTTCTCCATTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * *
82230 TAAGATTCATCATATTCGATCTGCTCCCCTACTGTTTAGGAG-GACAGAATCTGTAATCTTCAAC
66 TAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGG-GTGACAGAATCTGCAATCTTCAAC
82294 CTA
130 CTA
* * * * * * * * *
82297 CTCCACCATTGCTTTGGGAGATAGGTCTCACGGCTTAAATTTGCTTCTCTACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * * *
82362 GAAGATTCGCCATCTTCGATCTACTCCATTACTGCTTAGG
66 TAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGG
82402 ATGATAGGAC
Statistics
Matches: 918, Mismatches: 104, Indels: 24
0.88 0.10 0.02
Matches are distributed among these distances:
131 4 0.00
132 641 0.70
133 136 0.15
134 26 0.03
135 22 0.02
136 89 0.10
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
TAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
TA
Found at i:81409 original size:352 final size:352
Alignment explanation
Indices: 80884--81608 Score: 1073
Period size: 352 Copynumber: 2.1 Consensus size: 352
80874 CTTCAACCTA
* *
80884 CTCCACTACTACTTAGGGCGATAGGACTAATGGCTCAAATCTACTTCTCCACTGTATTGGGAAAG
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTCAAATCTACTTCTCCACTGTATTGGGAAAG
* ** * *
80949 TAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAGAATATGCAATCTTCAACC
66 TAAGATTCACCATATTCGATCAACTCCACTACTGCTTAGGGTGACAGAATATGCAATCTTCAACC
81014 AATTCCACTATGGCTTAGGGAGATAGGACAAATGGCATAAATCTGCTTCTCCACTGTATTGGGAA
131 AATTCCACTATGGCTTAGGGAGATAGGACAAATGGCATAAATCTGCTTCTCCACTGTATTGGGAA
*
81079 AATAAGATTCACCATCTTCGATCTACTCCACTACAGCTTAGTGTGACAGAATC-TGCAATCTTC-
196 AATAAGATTCACCATCTTCGATCTACTCCACTACAGCTTAGGGTGACAGAATCTTG-AATCTTCG
* * * *
81142 AGCCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTG
260 A-CCGACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGCTTCTCCACTATAATG
*
81207 GGAAGATAAGATTAACCATATTCGATCTG
324 GGAAGATAAGATTAACCATATTCGATCAG
* * *
81236 CTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGG-AAG
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTCAAATCTACTTCTCCACTGTATTGGGAAAG
* * * *
81300 ATAAGATTCACCATGTTCGATCAACTCCACTACTGCTTGGGGTGACAGAATCTGCATTCTTCAAC
66 -TAAGATTCACCATATTCGATCAACTCCACTACTGCTTAGGGTGACAGAATATGCAATCTTCAAC
* * * * *
81365 C-TTCTCCACTACT-GCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG
130 CAAT-TCCACTA-TGGCTTAGGGAGATAGGACAAATGGCATAAATCTGCTTCTCCACTGTATTGG
* * * *
81428 GAAGATAAGATTCATCATCTTCGATCTGCTCCACTACAGCTTAGGGTGACAGATTCTTGAATCTT
193 GAAAATAAGATTCACCATCTTCGATCTACTCCACTACAGCTTAGGGTGACAGAATCTTGAATCTT
* *
81493 CGACCGACTCCACTACTGCTTAGGGAGATTGGACTAATAGCTTAAATCTGCTTCTCCACTGTAAT
258 CGACCGACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGCTTCTCCACTATAAT
* *
81558 GGGAAGATAAGATTCACCATCTTCGATCAG
323 GGGAAGATAAGATTAACCATATTCGATCAG
81588 CTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
81609 CAGAATCTGC
Statistics
Matches: 335, Mismatches: 33, Indels: 10
0.89 0.09 0.03
Matches are distributed among these distances:
351 4 0.01
352 327 0.98
353 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (352 bp):
CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTCAAATCTACTTCTCCACTGTATTGGGAAAG
TAAGATTCACCATATTCGATCAACTCCACTACTGCTTAGGGTGACAGAATATGCAATCTTCAACC
AATTCCACTATGGCTTAGGGAGATAGGACAAATGGCATAAATCTGCTTCTCCACTGTATTGGGAA
AATAAGATTCACCATCTTCGATCTACTCCACTACAGCTTAGGGTGACAGAATCTTGAATCTTCGA
CCGACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGCTTCTCCACTATAATGGG
AAGATAAGATTAACCATATTCGATCAG
Found at i:81738 original size:484 final size:484
Alignment explanation
Indices: 80753--81740 Score: 1457
Period size: 484 Copynumber: 2.0 Consensus size: 484
80743 TTCAACCAAT
* * * *
80753 TCCACTATGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCAGTGTATTGGTAAAAT
1 TCCACTATTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAAT
* * * * *
80818 AAGATTAACCATCTTCGATCTATTCCAACACTGCTTAGGGTGATAGAATGTGTAATCTTCAACCT
66 AAGATTAACCATCTTCGATCAACTCCAACACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
80883 ACTCCACTACTACTTAGGGCGATAGGACTAATGGCTCAAATCTACTTCTCCACTGTATTGGGAAA
131 ACTCCACTACTACTTAGGGCGATAGGACTAATGGCTCAAATCTACTTCTCCACTGTATTGGGAAA
* * *
80948 GTAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAGAATATGCAATCTTCAAC
196 GTAAGATTCATCATATTCGATCTGCTCCACTACAGCTTAGGGTGACAGAATATGCAATCTTCAAC
* * *
81013 CAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCATAAATCTGCTTCTCCACTGTATTGGGA
261 CAACTCCACTATGGCTTAGGGAGATAGGACAAATAGCATAAATCTGCTTCTCCACTGTAATGGGA
*
81078 AAATAAGATTCACCATCTTCGATCTACTCCACTACAGCTTAGTGTGACAGAATCTGCAATCTTCA
326 AAATAAGATTCACCATCTTCGATCTACTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCA
* * *
81143 GCCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGG
391 ACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCATCTCCACTATATTGG
81208 GAAGATAAGATTAACCATATTCGATCTGC
456 GAAGATAAGATTAACCATATTCGATCTGC
* * *
81237 TCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
1 TCCACTATTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAAT
* * * *
81302 AAGATTCACCATGTTCGATCAACTCC-ACTACTGCTTGGGGTGACAGAATCTGCATTCTTCAACC
66 AAGATTAACCATCTTCGATCAACTCCAAC-ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
* * * * * *
81366 TTCTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGG-A
130 TACTCCACTACTACTTAGGGCGATAGGACTAATGGCTCAAATCTACTTCTCCACTGTATTGGGAA
* * *
81430 AGATAAGATTCATCATCTTCGATCTGCTCCACTACAGCTTAGGGTGACAGATTCTTG-AATCTTC
195 AG-TAAGATTCATCATATTCGATCTGCTCCACTACAGCTTAGGGTGACAGAAT-ATGCAATCTTC
* * * * *
81494 GACCGACTCCACTACT-GCTTAGGGAGATTGGACTAATAGCTTAAATCTGCTTCTCCACTGTAAT
258 AACCAACTCCACTA-TGGCTTAGGGAGATAGGACAAATAGCATAAATCTGCTTCTCCACTGTAAT
* *
81558 GGGAAGATAAGATTCACCATCTTCGATC-AGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAT
322 GGGAAAATAAGATTCACCATCTTCGATCTA-CTCCACTACAGCTTAGGGTGACAGAATCTGCAAT
*
81622 CTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCATCTCCACTGT
386 CTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCATCTCCACTAT
* *
81687 ATTGGGAA-AGTAAGATTCATCATATTCGATCTGC
451 ATTGGGAAGA-TAAGATTAACCATATTCGATCTGC
* *
81721 TTCACTATTGTTTAGGGTGA
1 TCCACTATTGCTTAGGGTGA
81741 CAGAATCTGC
Statistics
Matches: 450, Mismatches: 48, Indels: 12
0.88 0.09 0.02
Matches are distributed among these distances:
483 7 0.02
484 440 0.98
485 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (484 bp):
TCCACTATTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAAT
AAGATTAACCATCTTCGATCAACTCCAACACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
ACTCCACTACTACTTAGGGCGATAGGACTAATGGCTCAAATCTACTTCTCCACTGTATTGGGAAA
GTAAGATTCATCATATTCGATCTGCTCCACTACAGCTTAGGGTGACAGAATATGCAATCTTCAAC
CAACTCCACTATGGCTTAGGGAGATAGGACAAATAGCATAAATCTGCTTCTCCACTGTAATGGGA
AAATAAGATTCACCATCTTCGATCTACTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCA
ACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCATCTCCACTATATTGG
GAAGATAAGATTAACCATATTCGATCTGC
Found at i:82386 original size:88 final size:88
Alignment explanation
Indices: 82285--82518 Score: 245
Period size: 88 Copynumber: 2.7 Consensus size: 88
82275 AGAATCTGTA
* * * * * * * * *
82285 ATCTTCAACCTACTCCACCATTGCTTTGGGAGATAGGTCTCACGGCTTAAATTTGCTTCTCTACT
1 ATCTTCGATCTACTCCACTACTGCTTTGGGAGATAGGACTAACGGATTAAATCTGCTTCTCCACT
*
82350 GTATTGGGAAGAGAAGATTCGCC
66 GTATTGGGAAGAGAAGATTCACC
* * *
82373 ATCTTCGATCTACTCCATTACTGC-TTAGGATGATAGGACTAATGGATTAAATCTGCTTCTCCAC
1 ATCTTCGATCTACTCCACTACTGCTTTGGGA-GATAGGACTAACGGATTAAATCTGCTTCTCCAC
* *
82437 TGTATTGGGAAGATAGGATTCACC
65 TGTATTGGGAAGAGAAGATTCACC
* * * * * * * *
82461 ATCATCGATCTGCTCCACTACAGCTTAGGGAGATAGGACCAATGGCTGAAATCTGCTT
1 ATCTTCGATCTACTCCACTACTGCTTTGGGAGATAGGACTAACGGATTAAATCTGCTT
82519 TTCGCGTATG
Statistics
Matches: 120, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
87 5 0.04
88 111 0.93
89 4 0.03
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (88 bp):
ATCTTCGATCTACTCCACTACTGCTTTGGGAGATAGGACTAACGGATTAAATCTGCTTCTCCACT
GTATTGGGAAGAGAAGATTCACC
Found at i:82474 original size:533 final size:527
Alignment explanation
Indices: 81246--82405 Score: 1502
Period size: 533 Copynumber: 2.2 Consensus size: 527
81236 CTCCACTACT
* * * * * * * *
81246 GCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT-GGGAAGATAAGATTCA
1 GCTTAGGGAGATAGGACAAACGGCTTAAATCTCCTTCTCAACTGTATTGGGGAAAAGAAGATTCA
* * * * * * * * * *
81310 CCATGTTCGATCAACTCCACTACTGCTTGGGGTGACAGAATCTGCATTCTTCAACCTTCTCCACT
66 CCATCTTCGATCTACTCCACTACAGCTTAGGATGACAGAATCT-CAATATTAAACCTACTCCACC
* * * *
81375 ACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATT
130 ACTGCTTAGGGAGATAGGACTAAT-GCATAAATCTGCTTCTCCACTATATTGGGAAGATAAGATT
* * * * *
81440 CATCATCTTCGATCTGCTCCACTACAGCTTAGGGTGACAGATTCTTGAATCTTCGACCGACTCCA
194 CACCATATTCGATCTGCTCCACTACAGCTTAGGGCGACAGAATCTTGAATCTTCAACCGACTCCA
** *
81505 CTACTGCTTAGGGAGATTGGACTAATAGCTTAAATCTGCTTCTCCACTGTAATGGGAAGATAAGA
259 CTACTGCTTAGGGAGAAAGGACTAATAGCTTAAATCTGCTTCTCCACTATAATGGGAAGATAAGA
* *
81570 TTCACCATCTTCGATCAGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTC
324 TTCACCATATTCGATCAGCTCCACTACTGCTTAGGGGGACAGAATCTGCAATCTTCAACCTACTC
* *
81635 CACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCATCTCCACTGTATTGGGAAAGTAA
389 CACTACCACTTAGGGTGATAGGACTAATGGCTCAAATCTGCATCTCCACTGTATTGGGAAAGTAA
* * *
81700 GATTCATCATATTCGATCTGCTTCACTATTGTTTAGGGTGACAGAATCTGCAATCTTCAACCAAT
454 GATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCAAC
*
81765 TCCACTATG
519 TCCACCATG
* * *
81774 GCTTAGGGAGATAGGACAAATGGCTTAAATCTCCTTGTCAACTGTATTGGGGAAAATAAGATTCA
1 GCTTAGGGAGATAGGACAAACGGCTTAAATCTCCTTCTCAACTGTATTGGGGAAAAGAAGATTCA
* * * * *
81839 CCATCTTCGATCTACTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACT
66 CCATCTTCGATCTACTCCACTACAGCTTAGGATGACAGAATCT-CAATATTAAACCTACTCCACC
* *
81904 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATT
130 ACTGCTTAGGGAGATAGGACTAAT-GCATAAATCTGCTTCTCCACTATATTGGGAAGATAAGATT
* * *
81969 CACCATATTCGATCTGCTCCACTACTGCTTAGGGCGACAGAATC-TGCAATCTTCAACCTATTCC
194 CACCATATTCGATCTGCTCCACTACAGCTTAGGGCGACAGAATCTTG-AATCTTCAACCGACTCC
* * * *
82033 AGTACTGCTATTGGGAGAGAAGGACTAATGGCATTAAATCTGCTTCTCCTACTATATTGGGAAGA
258 ACTACTGCT-TAGGGAGA-AAGGACTAATAGC-TTAAATCTGCTTCTCC-ACTATAATGGGAAGA
* * *
82098 TAAGATTCACCATATTGGATCTGCTCCACTACTGTTTAGGGGGACAGAATCTGCAATCTTCAACC
319 TAAGATTCACCATATTCGATCAGCTCCACTACTGCTTAGGGGGACAGAATCTGCAATCTTCAACC
* * *
82163 TACTCCACTACCGCTTAGGGTGATAGGACTAATGGCTCAAATCTGCTTCTCCATTGTATTGGG-A
384 TACTCCACTACCACTTAGGGTGATAGGACTAATGGCTCAAATCTGCATCTCCACTGTATTGGGAA
* *
82227 AGATAAGATTCATCATATTCGATCTGCTCCCCTACTGTTTAGGAG-GACAGAATCTGTAATCTTC
449 AG-TAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGG-GTGACAGAATCTGCAATCTTC
* *
82291 AACCTACTCCACCATT
512 AACCAACTCCACCATG
* * ** * * * * *
82307 GCTTTGGGAGATAGGTCTCACGGCTTAAATTTGCTTCTCTACTGTATT-GGGAAGAGAAGATTCG
1 GCTTAGGGAGATAGGACAAACGGCTTAAATCTCCTTCTCAACTGTATTGGGGAAAAGAAGATTCA
* *
82371 CCATCTTCGATCTACTCCATTACTGCTTAGGATGA
66 CCATCTTCGATCTACTCCACTACAGCTTAGGATGA
82406 TAGGACTAAT
Statistics
Matches: 560, Mismatches: 64, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
528 44 0.08
529 197 0.35
530 7 0.01
531 10 0.02
532 64 0.11
533 237 0.42
534 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (527 bp):
GCTTAGGGAGATAGGACAAACGGCTTAAATCTCCTTCTCAACTGTATTGGGGAAAAGAAGATTCA
CCATCTTCGATCTACTCCACTACAGCTTAGGATGACAGAATCTCAATATTAAACCTACTCCACCA
CTGCTTAGGGAGATAGGACTAATGCATAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCA
CCATATTCGATCTGCTCCACTACAGCTTAGGGCGACAGAATCTTGAATCTTCAACCGACTCCACT
ACTGCTTAGGGAGAAAGGACTAATAGCTTAAATCTGCTTCTCCACTATAATGGGAAGATAAGATT
CACCATATTCGATCAGCTCCACTACTGCTTAGGGGGACAGAATCTGCAATCTTCAACCTACTCCA
CTACCACTTAGGGTGATAGGACTAATGGCTCAAATCTGCATCTCCACTGTATTGGGAAAGTAAGA
TTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCAACTC
CACCATG
Done.