Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_708 ID=scaffold_708-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4450
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:2471 original size:15 final size:16

Alignment explanation


    Indices: 2446--2486  Score: 59
    Period size: 15  Copynumber: 2.7  Consensus size: 16

       2436 AGAGAAAAAT

                            
       2446 AAAAGTGAAAATGAAG
          1 AAAAGTGAAAATGAAG

                            
       2462 AAAA-TGAAAATGAA-
          1 AAAAGTGAAAATGAAG

               *       
       2476 AAAGGTGAAAA
          1 AAAAGTGAAAA

       2487 GGAAAGCGAG


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  14    3  0.13
  15   16  0.70
  16    4  0.17

ACGTcount: A:0.66, C:0.00, G:0.22, T:0.12


Consensus pattern (16 bp):   
AAAAGTGAAAATGAAG
Done.