Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_711 ID=scaffold_711-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4404
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34


Found at i:863 original size:17 final size:16

Alignment explanation


    Indices: 841--872  Score: 55
    Period size: 17  Copynumber: 1.9  Consensus size: 16

        831 AGTTTGAAAA

                             
        841 TGATTTAGTTCCATATT
          1 TGATTTAGTT-CATATT

                           
        858 TGATTTAGTTCATAT
          1 TGATTTAGTTCATAT

        873 AATCTATATC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    5  0.33
  17   10  0.67

ACGTcount: A:0.25, C:0.09, G:0.12, T:0.53


Consensus pattern (16 bp):   
TGATTTAGTTCATATT
Done.