Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_714 ID=scaffold_714-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4527
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.37

Warning! 149 characters in sequence are not A, C, G, or T


Found at i:1967 original size:50 final size:50

Alignment explanation


    Indices: 1889--2083  Score: 212
    Period size: 50  Copynumber: 3.9  Consensus size: 50

       1879 TTTCCTGTAC

                  *     *  *    *                **      *    
       1889 TGCCAATGCCATATCTCAGATATGGTCTTACATTGGAGTTCTCATATCGG
          1 TGCCAACGCCATGTCCCAGACATGGTCTTACATTGGACCTCTCATCTCGG

                * * * *                   ****       *        
       1939 TGCCCATGTCGTGTCCCAGACATGGTCTTATGGGGGACCTCGCATCTCGG
          1 TGCCAACGCCATGTCCCAGACATGGTCTTACATTGGACCTCTCATCTCGG

                              *                                
       1989 TGCCAACGCCATGTCCCAAACATGGTCTTACA-TGAGACCTCTCATCTCGG
          1 TGCCAACGCCATGTCCCAGACATGGTCTTACATTG-GACCTCTCATCTCGG

                                             *           
       2039 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
          1 TGCCAACGCCATGTCCCAGACATGGTCTTACATTGGACCTCTCAT

       2084 AATTTAAATA


Statistics
Matches: 118,  Mismatches: 25, Indels: 4
        0.80            0.17        0.03

Matches are distributed among these distances:
  49    1  0.01
  50  116  0.98
  51    1  0.01

ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27


Consensus pattern (50 bp):   
TGCCAACGCCATGTCCCAGACATGGTCTTACATTGGACCTCTCATCTCGG
Done.