Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_718 ID=scaffold_718-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4337
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31


Found at i:980 original size:18 final size:19

Alignment explanation


    Indices: 957--992  Score: 56
    Period size: 18  Copynumber: 1.9  Consensus size: 19

        947 GAATCCCAAA

                               
        957 AAAAGAAA-AAGAAGAAAG
          1 AAAAGAAATAAGAAGAAAG

                      *       
        975 AAAAGAAATACGAAGAAA
          1 AAAAGAAATAAGAAGAAA

        993 TTCAATGATA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    8  0.50
  19    8  0.50

ACGTcount: A:0.75, C:0.03, G:0.19, T:0.03


Consensus pattern (19 bp):   
AAAAGAAATAAGAAGAAAG

Done.