Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_720 ID=scaffold_720-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4330
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:2693 original size:27 final size:27

Alignment explanation


    Indices: 2650--2701  Score: 70
    Period size: 27  Copynumber: 1.9  Consensus size: 27

       2640 TTTTCGCCTT

                        *    *         
       2650 TTTTATTTTCATTTTCTTCTTTTTCAC
          1 TTTTATTTTCATCTTCTCCTTTTTCAC

                                      
       2677 TTTTATTTTTC-TCTTCTCCTTTTTC
          1 TTTTA-TTTTCATCTTCTCCTTTTTC

       2702 TTTTTCGTCA


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  27   17  0.77
  28    5  0.23

ACGTcount: A:0.08, C:0.21, G:0.00, T:0.71


Consensus pattern (27 bp):   
TTTTATTTTCATCTTCTCCTTTTTCAC
Done.