Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60982465
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 868082 characters in sequence are not A, C, G, or T
File 105 of 204
Found at i:32081913 original size:28 final size:29
Alignment explanation
Indices: 32081882--32081940 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 29
32081872 GATATAAAAC
32081882 TATTTAAAATTTAA-AATTTTCATAATT-T
1 TATTTAAAATTTAATAATTTT-ATAATTAT
* *
32081910 TA-TTGAAATTTAATTATTTTATAATTAT
1 TATTTAAAATTTAATAATTTTATAATTAT
32081938 TAT
1 TAT
32081941 ATATTTTTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
27 16 0.62
28 10 0.38
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (29 bp):
TATTTAAAATTTAATAATTTTATAATTAT
Found at i:32081922 original size:27 final size:28
Alignment explanation
Indices: 32081888--32081940 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
32081878 AAACTATTTA
32081888 AAATTTAA-AATTTTCATAATT-TTATTG
1 AAATTTAATAATTTT-ATAATTATTATTG
*
32081915 AAATTTAATTATTTTATAATTATTAT
1 AAATTTAATAATTTTATAATTATTAT
32081941 ATATTTTTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (28 bp):
AAATTTAATAATTTTATAATTATTATTG
Found at i:32086256 original size:2 final size:2
Alignment explanation
Indices: 32086212--32086246 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
32086202 AGGCCGAATT
32086212 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32086247 TCACATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:32086548 original size:44 final size:43
Alignment explanation
Indices: 32086449--32086563 Score: 137
Period size: 44 Copynumber: 2.7 Consensus size: 43
32086439 ATTTCGTACA
* * *
32086449 ATGCCAACGTCCCAGACATGGTCTTATATGTAATCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACACGTAATCACATATCG
*
32086492 ATACC-ACTGTCCCAGACAGGGTCTTACACGTAAGTCACA-AGTCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACGTAA-TCACATA-TCG
32086536 ATGCCAACGTCCCAGAC-GTGGTCTTACA
1 ATGCCAACGTCCCAGACAG-GGTCTTACA
32086564 TGATAACATA
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
42 2 0.03
43 28 0.45
44 30 0.48
45 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACGTAATCACATATCG
Found at i:32087464 original size:20 final size:21
Alignment explanation
Indices: 32087439--32087478 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
32087429 CACAAATGAC
*
32087439 AACTAATTTGTC-TTTATTTT
1 AACTAATTTATCTTTTATTTT
32087459 AACTAATTTATCTTTTATTT
1 AACTAATTTATCTTTTATTT
32087479 GACAAATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.28, C:0.10, G:0.03, T:0.60
Consensus pattern (21 bp):
AACTAATTTATCTTTTATTTT
Found at i:32095681 original size:22 final size:23
Alignment explanation
Indices: 32095648--32095705 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
32095638 CTATATTATT
*
32095648 TTTA-ATTGTTTTAAATAT-ATA
1 TTTATATTATTTTAAATATAATA
*
32095669 TTTATATTATTTT-AATTTAATA
1 TTTATATTATTTTAAATATAATA
*
32095691 TTTAGTATTTTTTTA
1 TTTA-TATTATTTTA
32095706 TTTATTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 8 0.27
22 14 0.47
23 8 0.27
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (23 bp):
TTTATATTATTTTAAATATAATA
Found at i:32095708 original size:22 final size:22
Alignment explanation
Indices: 32095666--32095709 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
32095656 TTTTAAATAT
32095666 ATATTTATATTATTTTAATTTA
1 ATATTTATATTATTTTAATTTA
*
32095688 ATATTTAGTATT-TTTTTATTTA
1 ATATTTA-TATTATTTTAATTTA
32095710 TTAAAATTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (22 bp):
ATATTTATATTATTTTAATTTA
Found at i:32099137 original size:21 final size:21
Alignment explanation
Indices: 32099091--32099130 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32099081 GGTACACGGC
* *
32099091 CGTGTGGCTGAGACACATGAT
1 CGTGTGGCTGAGAAACACGAT
32099112 CGTGTGGCTGAGAAACACG
1 CGTGTGGCTGAGAAACACG
32099131 TCTGTGTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.20, G:0.35, T:0.20
Consensus pattern (21 bp):
CGTGTGGCTGAGAAACACGAT
Found at i:32099284 original size:21 final size:21
Alignment explanation
Indices: 32099245--32099285 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32099235 AATGACACAC
*
32099245 CTATGTGACTGAGGCACACGG
1 CTATGTGACTAAGGCACACGG
32099266 CTATGTGACTAAAGG-ACACG
1 CTATGTGACT-AAGGCACACG
32099286 TCCATGTACG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
CTATGTGACTAAGGCACACGG
Found at i:32099364 original size:19 final size:19
Alignment explanation
Indices: 32099340--32099386 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
32099330 TGTGGCCAAC
32099340 CCGTGTGACCCACTCCGGG
1 CCGTGTGACCCACTCCGGG
32099359 CCGTGTGACCCACTCCGGG
1 CCGTGTGACCCACTCCGGG
32099378 CCGTGTGAC
1 CCGTGTGAC
32099387 AGGAAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.11, C:0.40, G:0.32, T:0.17
Consensus pattern (19 bp):
CCGTGTGACCCACTCCGGG
Found at i:32100098 original size:78 final size:79
Alignment explanation
Indices: 32099941--32100098 Score: 309
Period size: 79 Copynumber: 2.0 Consensus size: 79
32099931 ATAATTAAAA
32099941 CTTACTTTTAACAAAAGACCAATCAGATTTTTTTTAATAATAAAAAAATGAAACTAAAGCAAAAA
1 CTTACTTTTAACAAAAGACCAATCAGATTTTTTTTAATAATAAAAAAATGAAACTAAAGCAAAAA
32100006 ATAATTTTAATTCT
66 ATAATTTTAATTCT
32100020 CTTACTTTTAACAAAAGACCAATCAGATTTTTTTTAATAAT-AAAAAATGAAACTAAAGCAAAAA
1 CTTACTTTTAACAAAAGACCAATCAGATTTTTTTTAATAATAAAAAAATGAAACTAAAGCAAAAA
32100084 ATAATTTTAATTCT
66 ATAATTTTAATTCT
32100098 C
1 C
32100099 ACTTAGCGCA
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
78 38 0.48
79 41 0.52
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.34
Consensus pattern (79 bp):
CTTACTTTTAACAAAAGACCAATCAGATTTTTTTTAATAATAAAAAAATGAAACTAAAGCAAAAA
ATAATTTTAATTCT
Found at i:32102461 original size:19 final size:20
Alignment explanation
Indices: 32102397--32102454 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
32102387 CCAATTTGTG
* *
32102397 GACAAGCTACAAGTAATGCA
1 GACAAGCTGCCAGTAATGCA
* *
32102417 GATAAACTGCCAGTAATGCA
1 GACAAGCTGCCAGTAATGCA
32102437 GACAAGCTGCCAGTAATG
1 GACAAGCTGCCAGTAATG
32102455 TGACAAGTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.17
Consensus pattern (20 bp):
GACAAGCTGCCAGTAATGCA
Found at i:32104873 original size:30 final size:30
Alignment explanation
Indices: 32104809--32104873 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
32104799 AAAGTAAAGT
* * * *
32104809 ATGAAGGATGAACGTAAGAGCATTTACTGT
1 ATGAAGGATGAACATAAGAGCATGTAATGC
32104839 ATGAAGGATGAACATAAGAGCATGTAATGC
1 ATGAAGGATGAACATAAGAGCATGTAATGC
32104869 ATGAA
1 ATGAA
32104874 ATCTGCTAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.42, C:0.09, G:0.26, T:0.23
Consensus pattern (30 bp):
ATGAAGGATGAACATAAGAGCATGTAATGC
Found at i:32105215 original size:53 final size:53
Alignment explanation
Indices: 32105143--32105254 Score: 161
Period size: 53 Copynumber: 2.1 Consensus size: 53
32105133 TTGATGGGTT
* * * *
32105143 ATATGGGAAGAATACCATATCATATAAGACCGTAATTGGTGGGTTATGGCATC
1 ATATGGAAAGAATACCATATCATATAAGACCATAACTAGTGGGTTATGGCATC
* * *
32105196 ATATGGAAATAATATCATATCATGTAAGACCATAACTAGTGGGTTATGGCATC
1 ATATGGAAAGAATACCATATCATATAAGACCATAACTAGTGGGTTATGGCATC
32105249 ATATGG
1 ATATGG
32105255 GGAAATTCAA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (53 bp):
ATATGGAAAGAATACCATATCATATAAGACCATAACTAGTGGGTTATGGCATC
Found at i:32105736 original size:29 final size:28
Alignment explanation
Indices: 32105674--32105739 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
32105664 GAATGAAAAA
32105674 GAATGCCTTCATGGTAGATTTATGAAAG
1 GAATGCCTTCATGGTAGATTTATGAAAG
* *
32105702 GAAATGCCTTCATGG-CGATCTCTATTAAAG
1 G-AATGCCTTCATGGTAGAT-T-TATGAAAG
32105732 GAATGCCT
1 GAATGCCT
32105740 CTATGGCAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
28 4 0.12
29 21 0.64
30 8 0.24
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (28 bp):
GAATGCCTTCATGGTAGATTTATGAAAG
Found at i:32107808 original size:9 final size:9
Alignment explanation
Indices: 32107796--32107820 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
32107786 ACCATATAAA
32107796 AAATTAACC
1 AAATTAACC
32107805 AAATTAACC
1 AAATTAACC
32107814 AAATTAA
1 AAATTAA
32107821 TCGAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (9 bp):
AAATTAACC
Found at i:32112006 original size:16 final size:18
Alignment explanation
Indices: 32111971--32112008 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
32111961 GATAATGATA
32111971 ATTCATTCCAAATATTTT
1 ATTCATTCCAAATATTTT
*
32111989 ATTCA-TCC-AATTTTTT
1 ATTCATTCCAAATATTTT
32112005 ATTC
1 ATTC
32112009 TCTCCCCCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 11 0.58
17 3 0.16
18 5 0.26
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTCATTCCAAATATTTT
Found at i:32115757 original size:24 final size:24
Alignment explanation
Indices: 32115729--32115780 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
32115719 TTCGTAGGTC
* * *
32115729 AAATAAATTATGCTAATATATTCT
1 AAATAAATTATACTAATAAATACT
*
32115753 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
32115777 AAAT
1 AAAT
32115781 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:32120408 original size:75 final size:74
Alignment explanation
Indices: 32120245--32120384 Score: 203
Period size: 75 Copynumber: 1.9 Consensus size: 74
32120235 GAAAGGTTAC
* *
32120245 ACCCAACGCT-GTCAGAT-TAACCGACAATAATAATTTTGAGCCCAGCTCTAGTTGGATAAACCA
1 ACCCAACGCTAGTCGGATAT-ACCGACAATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCA
32120308 ACAATATTTG
65 ACAATATTTG
* * *
32120318 CACCCAATGCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGCTCTAGTTTGATAAACCA
1 -ACCCAACGCTAGTCGGATATACCGACAATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCA
32120383 AC
65 AC
32120385 GGTGATTGTG
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
74 9 0.15
75 49 0.83
76 1 0.02
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.25
Consensus pattern (74 bp):
ACCCAACGCTAGTCGGATATACCGACAATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCAA
CAATATTTG
Found at i:32123828 original size:7 final size:7
Alignment explanation
Indices: 32123818--32123847 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
32123808 TGAGAGATGA
32123818 GAAGGAT
1 GAAGGAT
32123825 GAAGGAT
1 GAAGGAT
32123832 GAAGGAT
1 GAAGGAT
*
32123839 GAGGGAT
1 GAAGGAT
32123846 GA
1 GA
32123848 TTGAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.47, T:0.13
Consensus pattern (7 bp):
GAAGGAT
Found at i:32138081 original size:22 final size:21
Alignment explanation
Indices: 32138043--32138083 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
32138033 ATGTGTTATA
**
32138043 AACAAAGAGAATTATAGAATG
1 AACAAAGAGAAGAATAGAATG
32138064 AACAAGAGAGAAGAATAGAA
1 AACAA-AGAGAAGAATAGAA
32138084 AAATGAAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.61, C:0.05, G:0.22, T:0.12
Consensus pattern (21 bp):
AACAAAGAGAAGAATAGAATG
Found at i:32139568 original size:19 final size:18
Alignment explanation
Indices: 32139546--32139587 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
32139536 AATAATTTTA
32139546 AGTATTATATCAAAAAAAT
1 AGTA-TATATCAAAAAAAT
* *
32139565 AGTATATATGATAAAAAT
1 AGTATATATCAAAAAAAT
32139583 A-TATA
1 AGTATA
32139588 ATGAAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 4 0.19
18 13 0.62
19 4 0.19
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (18 bp):
AGTATATATCAAAAAAAT
Found at i:32139587 original size:17 final size:17
Alignment explanation
Indices: 32139559--32139591 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32139549 ATTATATCAA
32139559 AAAAATAGTATATATGAT
1 AAAAATAGTATA-ATGAT
32139577 AAAAATA-TATAATGA
1 AAAAATAGTATAATGA
32139592 AATTAATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 4 0.27
18 7 0.47
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (17 bp):
AAAAATAGTATAATGAT
Found at i:32140178 original size:31 final size:32
Alignment explanation
Indices: 32140118--32140187 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
32140108 TTTTAAATTA
* *
32140118 AAATTATTTAAAATAAATTTTTTATAATTTTT
1 AAATTTTTTAAAATAAATTTTTTATAATTTCT
* *
32140150 AATTTTTTTAAAA-ATATTTTTT-TGAATTTCT
1 AAATTTTTTAAAATAAATTTTTTAT-AATTTCT
32140181 AAATTTT
1 AAATTTT
32140188 AAAAATCAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
30 1 0.03
31 20 0.62
32 11 0.34
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (32 bp):
AAATTTTTTAAAATAAATTTTTTATAATTTCT
Found at i:32140186 original size:32 final size:32
Alignment explanation
Indices: 32140104--32140187 Score: 79
Period size: 32 Copynumber: 2.7 Consensus size: 32
32140094 GCAATTAATT
* *
32140104 AATTTTTTA-AA--TTAAAATTATTTAAAATA
1 AATTTTTTATAATTTTAAATTTTTTTAAAATA
*
32140133 AATTTTTTATAATTTTTAATTTTTTTAAAA-A
1 AATTTTTTATAATTTTAAATTTTTTTAAAATA
*
32140164 TATTTTTT-TGAATTTCTAAATTTT
1 AATTTTTTAT-AATTT-TAAATTTT
32140188 AAAAATCAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
29 9 0.20
30 3 0.07
31 13 0.29
32 20 0.44
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (32 bp):
AATTTTTTATAATTTTAAATTTTTTTAAAATA
Found at i:32143012 original size:18 final size:17
Alignment explanation
Indices: 32142970--32143012 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
32142960 CAACAAATGA
* *
32142970 ATTTAAACTTAAGAAAT
1 ATTTAAAATTAAAAAAT
*
32142987 AATTAAAATTAAAAAAT
1 ATTTAAAATTAAAAAAT
32143004 CATTTAAAA
1 -ATTTAAAA
32143013 CCCGTAATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (17 bp):
ATTTAAAATTAAAAAAT
Found at i:32144716 original size:54 final size:54
Alignment explanation
Indices: 32144637--32144754 Score: 164
Period size: 54 Copynumber: 2.2 Consensus size: 54
32144627 CCACTTCCCT
* * *
32144637 AACCCCTTCCTTACCACCTCCATCACTCTCACCACCTTCATTGACAGCAACATC
1 AACCCCCTCCTCACCACCTCCATCACTCTCACCACCTTCACTGACAGCAACATC
* * *
32144691 AACCCCCTCCTCACCGCCTCTATCACTCTCACCACCTTCGCTGACAGCAACATC
1 AACCCCCTCCTCACCACCTCCATCACTCTCACCACCTTCACTGACAGCAACATC
* *
32144745 ATCACCCTCC
1 AACCCCCTCC
32144755 CTACCTAAAC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.24, C:0.49, G:0.05, T:0.22
Consensus pattern (54 bp):
AACCCCCTCCTCACCACCTCCATCACTCTCACCACCTTCACTGACAGCAACATC
Found at i:32144864 original size:17 final size:17
Alignment explanation
Indices: 32144839--32144872 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
32144829 CTCTCCCTGA
*
32144839 CCCTTACCCTCACCACC
1 CCCTAACCCTCACCACC
32144856 CCCTAACCCTCACCACC
1 CCCTAACCCTCACCACC
32144873 TTTACTACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.65, G:0.00, T:0.15
Consensus pattern (17 bp):
CCCTAACCCTCACCACC
Found at i:32144964 original size:68 final size:67
Alignment explanation
Indices: 32144792--32144964 Score: 204
Period size: 68 Copynumber: 2.6 Consensus size: 67
32144782 CCCGAACCCG
* * * *
32144792 AACCCTCACTACCTTTACTGCCAGCAAACTCACCATCCTCTCCCTGACCCTTACCCTCACCACCC
1 AACCCTCACTACCTTTACTGCCAACAACCTCACCACCCTCTCCCTCACCCTTACCCTCACCA-CC
32144857 CCT
65 CCT
* * * *
32144860 AACCCTCACCACCTTTACTACCAACAACTTTACCACCCTCTCCCTCACCCTTACCACCTCACCA-
1 AACCCTCACTACCTTTACTGCCAACAACCTCACCACCCTCTCCCTCACCCTTA-C-CCTCACCAC
32144924 CCCT
64 CCCT
* * * *
32144928 CACCCCCACTACATTTACTGCCAACAACCTCGCCACC
1 AACCCTCACTACCTTTACTGCCAACAACCTCACCACC
32144965 TTCATTACTA
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
68 78 0.90
69 1 0.01
70 8 0.09
ACGTcount: A:0.24, C:0.52, G:0.03, T:0.21
Consensus pattern (67 bp):
AACCCTCACTACCTTTACTGCCAACAACCTCACCACCCTCTCCCTCACCCTTACCCTCACCACCC
CT
Found at i:32153237 original size:4 final size:4
Alignment explanation
Indices: 32153228--32153261 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
32153218 CGTAAAATAT
32153228 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
32153262 TGAAAATGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:32157211 original size:30 final size:27
Alignment explanation
Indices: 32157156--32157213 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 27
32157146 TGACTTATTT
*
32157156 ATAAAAAATATATTTTTTTAAATTATG
1 ATAAAAAATATATTTTTATAAATTATG
32157183 ATAAAAAATATATTATTTATAAGTATTATG
1 ATAAAAAATATATT-TTTATAA--ATTATG
32157213 A
1 A
32157214 AAGTTATTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 14 0.52
28 6 0.22
30 7 0.26
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (27 bp):
ATAAAAAATATATTTTTATAAATTATG
Found at i:32157264 original size:16 final size:16
Alignment explanation
Indices: 32157243--32157276 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
32157233 AAAATTGTAC
32157243 TTATAAAATTTT-TATA
1 TTAT-AAATTTTATATA
32157259 TTATAAATTTTATATA
1 TTATAAATTTTATATA
32157275 TT
1 TT
32157277 TTTACTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTATAAATTTTATATA
Found at i:32161436 original size:71 final size:71
Alignment explanation
Indices: 32161351--32161932 Score: 819
Period size: 71 Copynumber: 8.2 Consensus size: 71
32161341 TCTACCCTGT
*
32161351 AACAATTTGGGCAGCATATATACAATAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
1 AACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
*
32161416 ATATAA
66 ATATAC
* * * ** *
32161422 AACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTACA-TTAAAATTGGAAAGCAT
1 AACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
32161486 ATATAC
66 ATATAC
* * *
32161492 AACAATTTGGGCAGCATAAATACCACAAATTGAGCAGCATTTTTACACCAAAATTTGGACAGCAT
1 AACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
32161557 ATATAC
66 ATATAC
* * * * *
32161563 AACAAATTGGGCAGCATATATATACCAAATTGAGTAGCATTTTTACATC-AAAATTGGACAGCAT
1 AACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
32161627 ATATAC
66 ATATAC
* * *
32161633 AACAATTTGGGCAGCATAAATACAACAAATTGATCAGCATTTTTACACCAAAAATTGGACAGCGT
1 AACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
*
32161698 ATATAA
66 ATATAC
* * * * * *
32161704 AACAAATTGGGCAACATATATATACCAAATTGAGCAACATTTTTACATC-AAAATTGGACAGCAT
1 AACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
32161768 ATATAC
66 ATATAC
* * *
32161774 AACAATTTGGGCAGCATAAATACAACAAATTGAGCAACATTTTTACACCAAAAATCGGACAGCAT
1 AACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
32161839 ATATAC
66 ATATAC
* * * * * *
32161845 AACAAATTGGGCAGCATTTATATACCAAATTGAACAGCATTTTTACACCAAAATTTGGACAGCAT
1 AACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
*
32161910 ATATAT
66 ATATAC
32161916 AACAATTTGGGCAGCAT
1 AACAATTTGGGCAGCAT
32161933 TTAAGTATCT
Statistics
Matches: 446, Mismatches: 62, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
70 185 0.41
71 261 0.59
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.27
Consensus pattern (71 bp):
AACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
ATATAC
Found at i:32161605 original size:141 final size:141
Alignment explanation
Indices: 32161351--32161932 Score: 984
Period size: 141 Copynumber: 4.1 Consensus size: 141
32161341 TCTACCCTGT
* *
32161351 AACAATTTGGGCAGCATATATACAATAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
1 AACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
* *
32161416 ATATAAAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTACATTAAAATTGGAA
66 ATATAAAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAATTGGAC
32161481 AGCATATATAC
131 AGCATATATAC
* *
32161492 AACAATTTGGGCAGCATAAATACCACAAATTGAGCAGCATTTTTACACCAAAATTTGGACAGCAT
1 AACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
* *
32161557 ATATACAACAAATTGGGCAGCATATATATACCAAATTGAGTAGCATTTTTACATCAAAATTGGAC
66 ATATAAAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAATTGGAC
32161622 AGCATATATAC
131 AGCATATATAC
* *
32161633 AACAATTTGGGCAGCATAAATACAACAAATTGATCAGCATTTTTACACCAAAAATTGGACAGCGT
1 AACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
* *
32161698 ATATAAAACAAATTGGGCAACATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGAC
66 ATATAAAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAATTGGAC
32161763 AGCATATATAC
131 AGCATATATAC
* *
32161774 AACAATTTGGGCAGCATAAATACAACAAATTGAGCAACATTTTTACACCAAAAATCGGACAGCAT
1 AACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
* * * *
32161839 ATATACAACAAATTGGGCAGCATTTATATACCAAATTGAACAGCATTTTTACACCAAAATTTGGA
66 ATATAAAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAA-TTGGA
*
32161904 CAGCATATATAT
130 CAGCATATATAC
32161916 AACAATTTGGGCAGCAT
1 AACAATTTGGGCAGCAT
32161933 TTAAGTATCT
Statistics
Matches: 413, Mismatches: 27, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
141 380 0.92
142 33 0.08
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.27
Consensus pattern (141 bp):
AACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCAT
ATATAAAACAAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAATTGGAC
AGCATATATAC
Found at i:32161809 original size:20 final size:22
Alignment explanation
Indices: 32161351--32161861 Score: 169
Period size: 23 Copynumber: 21.7 Consensus size: 22
32161341 TCTACCCTGT
* *
32161351 AACAATTTGGGCAGCATATATAC
1 AACAAATT-GGCAGCATAAATAC
* ***
32161374 AATAAATTGAGCAGCATTTTTAC
1 AACAAATTG-GCAGCATAAATAC
* * *
32161397 ACCAAAAATTGGACAGCATATATAA
1 A--ACAAATTGG-CAGCATAAATAC
* *
32161422 AACAAATTGGGCAGCATATATAT
1 AACAAATT-GGCAGCATAAATAC
* ***
32161445 ACCAAATTGAGCAGCATTTTTAC
1 AACAAATTG-GCAGCATAAATAC
* *
32161468 ATTA-AAATTGGAAAGCATATATAC
1 A--ACAAATTGG-CAGCATAAATAC
*
32161492 AACAATTTGGGCAGCATAAATAC
1 AACAAATT-GGCAGCATAAATAC
* ***
32161515 CACAAATTGAGCAGCATTTTTAC
1 AACAAATTG-GCAGCATAAATAC
* *
32161538 ACCAAAATTTGGACAGCATATATAC
1 AAC-AAA-TTGG-CAGCATAAATAC
* *
32161563 AACAAATTGGGCAGCATATATAT
1 AACAAATT-GGCAGCATAAATAC
* * ***
32161586 ACCAAATTGAGTAGCATTTTTAC
1 AACAAATTG-GCAGCATAAATAC
* *
32161609 ATCAAAATTGGACAGCATATATAC
1 AAC-AAATTGG-CAGCATAAATAC
*
32161633 AACAATTTGGGCAGCATAAATAC
1 AACAAATT-GGCAGCATAAATAC
* ***
32161656 AACAAATTGATCAGCATTTTTAC
1 AACAAATTG-GCAGCATAAATAC
* * * *
32161679 ACCAAAAATTGGACAGCGTATATAA
1 A--ACAAATTGG-CAGCATAAATAC
* * *
32161704 AACAAATTGGGCAACATATATAT
1 AACAAATT-GGCAGCATAAATAC
* * ***
32161727 ACCAAATTGAGCAACATTTTTAC
1 AACAAATTG-GCAGCATAAATAC
* *
32161750 ATCAAAATTGGACAGCATATATAC
1 AAC-AAATTGG-CAGCATAAATAC
*
32161774 AACAATTTGGGCAGCATAAATAC
1 AACAAATT-GGCAGCATAAATAC
* ***
32161797 AACAAATTGAGCAACATTTTTAC
1 AACAAATTG-GCAGCATAAATAC
* * *
32161820 ACCAAAAATCGGACAGCATATATAC
1 A--ACAAATTGG-CAGCATAAATAC
32161845 AACAAATTGGGCAGCAT
1 AACAAATT-GGCAGCAT
32161862 TTATATACCA
Statistics
Matches: 372, Mismatches: 82, Indels: 68
0.71 0.16 0.13
Matches are distributed among these distances:
22 8 0.02
23 227 0.61
24 73 0.20
25 64 0.17
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (22 bp):
AACAAATTGGCAGCATAAATAC
Found at i:32163023 original size:28 final size:28
Alignment explanation
Indices: 32162987--32163055 Score: 93
Period size: 28 Copynumber: 2.5 Consensus size: 28
32162977 AATAAGTTCA
* * *
32162987 CACAATTAGTGCTTAATAATCAATCTCG
1 CACACTTAGTGCTTAACAATCAAACTCG
* *
32163015 CACACTTAGTGCTTTACAATTAAACTCG
1 CACACTTAGTGCTTAACAATCAAACTCG
32163043 CACACTTAGTGCT
1 CACACTTAGTGCT
32163056 AATCTCATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.32
Consensus pattern (28 bp):
CACACTTAGTGCTTAACAATCAAACTCG
Found at i:32166507 original size:7 final size:8
Alignment explanation
Indices: 32166491--32166517 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
32166481 TCGACTCCCG
32166491 TTTTCTTT
1 TTTTCTTT
32166499 TTTTCTTT
1 TTTTCTTT
32166507 TTTTCTTT
1 TTTTCTTT
32166515 TTT
1 TTT
32166518 AAAAAATGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTCTTT
Found at i:32169795 original size:70 final size:67
Alignment explanation
Indices: 32169710--32169837 Score: 193
Period size: 70 Copynumber: 1.9 Consensus size: 67
32169700 AATAAGAAAA
** *
32169710 GGCAAAACTAAGTCGTTTTGATAAATGTTTACCTTTTCTAAAGTTAAAAGTCAAAACCATTAAGT
1 GGCAAAACTAAGTCGTTTTGATAAATGTTTA-CTCAT-T-AAGTTAAAAGGCAAAACCATTAAGT
32169775 TAAAG
63 TAAAG
*
32169780 GGCAAAACTATGTCGTTTTGATAAATGTTTACTCATTAAGTTAAAAGGCAAAACCATT
1 GGCAAAACTAAGTCGTTTTGATAAATGTTTACTCATTAAGTTAAAAGGCAAAACCATT
32169838 GTATTGTTTA
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
67 20 0.37
68 1 0.02
69 3 0.06
70 30 0.56
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (67 bp):
GGCAAAACTAAGTCGTTTTGATAAATGTTTACTCATTAAGTTAAAAGGCAAAACCATTAAGTTAA
AG
Found at i:32172841 original size:19 final size:19
Alignment explanation
Indices: 32172813--32172865 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
32172803 ATCTTCAAGA
32172813 ATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
*
32172832 ATATGTAATCTTAGATATG
1 ATATGCAATCTTAGATATG
32172851 ATATGCAATCTTAGA
1 ATATGCAATCTTAGA
32172866 AGATATGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (19 bp):
ATATGCAATCTTAGATATG
Found at i:32172841 original size:36 final size:35
Alignment explanation
Indices: 32172801--32172872 Score: 85
Period size: 36 Copynumber: 2.0 Consensus size: 35
32172791 TATGGAAACA
32172801 TAATCTTCA-AGA-ATATGCAATCTTAGATATGATATG
1 TAATCTT-AGAGAGATATGCAATCTTAGA-A-GATATG
*
32172837 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTAGAGA-GATATGCAATCTTAGAAGATATG
32172873 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 1 0.03
36 15 0.47
37 1 0.03
38 15 0.47
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (35 bp):
TAATCTTAGAGAGATATGCAATCTTAGAAGATATG
Found at i:32174917 original size:30 final size:29
Alignment explanation
Indices: 32174883--32174950 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
32174873 ACCAAAAAAA
32174883 GCCGATTTTTTACAAAATTTACCGAAATGG
1 GCCGATTTTTTA-AAAATTTACCGAAATGG
* ** *
32174913 GCCGACTTTTTAATTATTTACCGGAATGG
1 GCCGATTTTTTAAAAATTTACCGAAATGG
32174942 GCC-ATTTTT
1 GCCGATTTTT
32174951 CGCGAAATCG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 5 0.15
29 17 0.52
30 11 0.33
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (29 bp):
GCCGATTTTTTAAAAATTTACCGAAATGG
Found at i:32175815 original size:40 final size:40
Alignment explanation
Indices: 32175741--32175861 Score: 104
Period size: 40 Copynumber: 3.0 Consensus size: 40
32175731 AAACTGTTCA
* *
32175741 TGCCACGTCAGCAAATCGCGTCCT-A-GGGGGCGCGATTTCC
1 TGCCACGTCAGCAAATCGCG--CTGACGTGGACGCGATTTCC
* *
32175781 TTCCACGTCAGCAAATCGCGCTGACGTGGACGCGATGTCC
1 TGCCACGTCAGCAAATCGCGCTGACGTGGACGCGATTTCC
* * * *
32175821 TGACACGT-ACCTTGACATCGTGCTGACGTGGACGCGATTTC
1 TGCCACGTCAGC---AAATCGCGCTGACGTGGACGCGATTTC
32175862 GCGGAAAATA
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
38 2 0.03
39 3 0.05
40 37 0.56
42 24 0.36
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.22
Consensus pattern (40 bp):
TGCCACGTCAGCAAATCGCGCTGACGTGGACGCGATTTCC
Found at i:32184964 original size:33 final size:33
Alignment explanation
Indices: 32184890--32184982 Score: 116
Period size: 33 Copynumber: 2.8 Consensus size: 33
32184880 CATAGCATCC
* *
32184890 ACAGAGATAGTCTGCTGGGACAGTAAACACAGA
1 ACAGAGATAGTCTACTGGGACAGTAAACACAAA
* *
32184923 ACATAGATAGTCTACTGGGACAGTAAACATAAA
1 ACAGAGATAGTCTACTGGGACAGTAAACACAAA
* *
32184956 ATAGAGATAATCTA-TCGGGACAGTAAA
1 ACAGAGATAGTCTACT-GGGACAGTAAA
32184983 TATGAGTAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
32 1 0.02
33 51 0.98
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (33 bp):
ACAGAGATAGTCTACTGGGACAGTAAACACAAA
Found at i:32185032 original size:28 final size:27
Alignment explanation
Indices: 32184966--32185039 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
32184956 ATAGAGATAA
* *
32184966 TCTATCGGGACAGTAAATATGAGTAAG
1 TCTATCGGGATAGTAAACATGAGTAAG
* * *
32184993 TCCA-CTGAGATAATAAACATGAGGTAAG
1 TCTATC-GGGATAGTAAACATGA-GTAAG
32185021 TCTATCGGGATAGTAAACA
1 TCTATCGGGATAGTAAACA
32185040 CGGCGTAAGT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
26 1 0.03
27 15 0.42
28 19 0.53
29 1 0.03
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (27 bp):
TCTATCGGGATAGTAAACATGAGTAAG
Found at i:32188477 original size:26 final size:26
Alignment explanation
Indices: 32188450--32189043 Score: 577
Period size: 26 Copynumber: 22.9 Consensus size: 26
32188440 TACCATGCCA
* *
32188450 TGCATGTATGCGAGCTGTTATTAACA
1 TGCATGTATGCGAGCTGTTATTACCT
* * ** *
32188476 TGCATGTTTGTGATTTGTTATTACCA
1 TGCATGTATGCGAGCTGTTATTACCT
* *
32188502 TGCATGTGTGTGAGCTGTTATTACCT
1 TGCATGTATGCGAGCTGTTATTACCT
* * *
32188528 CGCATGTATGTGAGCTGTTATTACCA
1 TGCATGTATGCGAGCTGTTATTACCT
**
32188554 TGCATGCGTGCG-GACTGTTATTACCT
1 TGCATGTATGCGAG-CTGTTATTACCT
32188580 TGCATGTATGCGAGCTGTTATTACCT
1 TGCATGTATGCGAGCTGTTATTACCT
*
32188606 TGCATGTATACGAGCTGTTATTACCT
1 TGCATGTATGCGAGCTGTTATTACCT
32188632 TGCATGTATGCGAGCTGTTATTACCT
1 TGCATGTATGCGAGCTGTTATTACCT
*
32188658 TGCATGTATGCGAGCTGTTATTACCA
1 TGCATGTATGCGAGCTGTTATTACCT
* *
32188684 TGCATGTGT-CTGAGTTGTTATTACCT
1 TGCATGTATGC-GAGCTGTTATTACCT
* * *
32188710 TGCATGTGTGCAAGCTATTATTACCT
1 TGCATGTATGCGAGCTGTTATTACCT
* * * *
32188736 TGCATGAATG-TATGCTATTATTACCA
1 TGCATGTATGCGA-GCTGTTATTACCT
* *
32188762 TGCATGT-CGTGAGCTGTTATTACCT
1 TGCATGTATGCGAGCTGTTATTACCT
*
32188787 TGCATGTATGCGAGTTGTTATTACCT
1 TGCATGTATGCGAGCTGTTATTACCT
* * * * *
32188813 TGCATGAATGTGAGCTATTATTCCCA
1 TGCATGTATGCGAGCTGTTATTACCT
*
32188839 TGCATGTGTGCGAGCTGTTATTACCT
1 TGCATGTATGCGAGCTGTTATTACCT
* * ** *
32188865 TGTATGTGTATGAGCTGTTATTACCA
1 TGCATGTATGCGAGCTGTTATTACCT
* * * * * *
32188891 TACATGTGTGTGAACTATTATTACCA
1 TGCATGTATGCGAGCTGTTATTACCT
* * ** *
32188917 TGCATGTGTGCAAATTTTTATTACCT
1 TGCATGTATGCGAGCTGTTATTACCT
** * * *
32188943 TGCATGTATATGAGATTTTATTACCAA
1 TGCATGTATGCGAGCTGTTATTACC-T
* *
32188970 T-CATGTGTGCGAGTTGTTATTACCT
1 TGCATGTATGCGAGCTGTTATTACCT
*
32188995 TACATGTATGCGAGCTGTTATTACCT
1 TGCATGTATGCGAGCTGTTATTACCT
* *
32189021 TGCATGTATGTGAGTTGTTATTA
1 TGCATGTATGCGAGCTGTTATTA
32189044 TAATGTATGT
Statistics
Matches: 474, Mismatches: 85, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
25 23 0.05
26 448 0.95
27 3 0.01
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (26 bp):
TGCATGTATGCGAGCTGTTATTACCT
Found at i:32188768 original size:22 final size:22
Alignment explanation
Indices: 32188738--32188797 Score: 57
Period size: 25 Copynumber: 2.6 Consensus size: 22
32188728 TATTACCTTG
*
32188738 CATGAATGTATGCTATTATTAC
1 CATGCATGTATGCTATTATTAC
* *
32188760 CATGCATGTCGTGAGCTGTTATTAC
1 CATGCATGT-AT--GCTATTATTAC
*
32188785 CTTGCATGTATGC
1 CATGCATGTATGC
32188798 GAGTTGTTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
22 10 0.33
23 1 0.03
24 1 0.03
25 18 0.60
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.38
Consensus pattern (22 bp):
CATGCATGTATGCTATTATTAC
Found at i:32198485 original size:12 final size:12
Alignment explanation
Indices: 32198468--32198510 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
32198458 GTGGTTGCGA
32198468 GAGGTGTGTTGT
1 GAGGTGTGTTGT
32198480 GAGGTG-GTACTGT
1 GAGGTGTGT--TGT
*
32198493 GAGGTGTGTTGC
1 GAGGTGTGTTGT
32198505 GAGGTG
1 GAGGTG
32198511 GTACAACGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
11 2 0.07
12 14 0.52
13 9 0.33
14 2 0.07
ACGTcount: A:0.12, C:0.05, G:0.51, T:0.33
Consensus pattern (12 bp):
GAGGTGTGTTGT
Found at i:32198513 original size:25 final size:25
Alignment explanation
Indices: 32198436--32198514 Score: 88
Period size: 25 Copynumber: 3.1 Consensus size: 25
32198426 CGCTAAGTGA
* *
32198436 TACTGTGAGGTGGTATTACGAGGTGG
1 TACTGTGAGGT-GTGTTGCGAGGTGG
* * *
32198462 TTGC-GAGAGGTGTGTTGTGAGGTGG
1 -TACTGTGAGGTGTGTTGCGAGGTGG
32198487 TACTGTGAGGTGTGTTGCGAGGTGG
1 TACTGTGAGGTGTGTTGCGAGGTGG
32198512 TAC
1 TAC
32198515 AACGAGGTGA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 2 0.05
25 33 0.77
26 6 0.14
27 2 0.05
ACGTcount: A:0.15, C:0.08, G:0.46, T:0.32
Consensus pattern (25 bp):
TACTGTGAGGTGTGTTGCGAGGTGG
Found at i:32198521 original size:25 final size:25
Alignment explanation
Indices: 32198468--32198536 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
32198458 GTGGTTGCGA
* ***
32198468 GAGGTGTGTTGTGAGGTGGTACTGT
1 GAGGTGTGTTGCGAGGTGGTACAAC
32198493 GAGGTGTGTTGCGAGGTGGTACAAC
1 GAGGTGTGTTGCGAGGTGGTACAAC
*
32198518 GAGGTGAGATTGCGAGGTG
1 GAGGTGTG-TTGCGAGGTG
32198537 ATATCGCGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
25 28 0.74
26 10 0.26
ACGTcount: A:0.17, C:0.07, G:0.48, T:0.28
Consensus pattern (25 bp):
GAGGTGTGTTGCGAGGTGGTACAAC
Found at i:32198558 original size:13 final size:13
Alignment explanation
Indices: 32198517--32198558 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
32198507 GGTGGTACAA
*
32198517 CGAGGTGAGATTG
1 CGAGGTGATATTG
*
32198530 CGAGGTGATATCG
1 CGAGGTGATATTG
*
32198543 CGAGGTGATTTTG
1 CGAGGTGATATTG
32198556 CGA
1 CGA
32198559 TACCCCTAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.21, C:0.12, G:0.40, T:0.26
Consensus pattern (13 bp):
CGAGGTGATATTG
Found at i:32212383 original size:18 final size:19
Alignment explanation
Indices: 32212334--32212377 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 19
32212324 AATATAAAAC
32212334 AATTAAGAATTTAATTAGTTT
1 AATTAAGAA--TAATTAGTTT
32212355 AATTAAGAATAATTAG-TT
1 AATTAAGAATAATTAGTTT
32212373 AATTA
1 AATTA
32212378 CTAATACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.30
19 7 0.30
21 9 0.39
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
AATTAAGAATAATTAGTTT
Found at i:32237000 original size:25 final size:26
Alignment explanation
Indices: 32236972--32237020 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32236962 TTTCATCCCT
32236972 ATTTTACCC-CAGTAAAATTTTGACG
1 ATTTTACCCTCAGTAAAATTTTGACG
**
32236997 ATTTTACCCTTGGTAAAATTTTGA
1 ATTTTACCCTCAGTAAAATTTTGA
32237021 AAAACTATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (26 bp):
ATTTTACCCTCAGTAAAATTTTGACG
Found at i:32238690 original size:27 final size:27
Alignment explanation
Indices: 32238652--32238911 Score: 315
Period size: 27 Copynumber: 9.6 Consensus size: 27
32238642 TGGACCCAAG
*
32238652 ATTACTGAAATACCCTCGAAGGGTAAA
1 ATTACCGAAATACCCTCGAAGGGTAAA
*
32238679 ATTATCGAAATACCCTCGAAGGGTAAA
1 ATTACCGAAATACCCTCGAAGGGTAAA
** * *
32238706 ATTACTAAAATACCCTCAAAAGGTAAA
1 ATTACCGAAATACCCTCGAAGGGTAAA
*
32238733 ATTACCGAAATAACCCT-AAAGGGTAAA
1 ATTACCGAAAT-ACCCTCGAAGGGTAAA
**
32238760 ATTATTGAAATACCCTCGAAGGGTAAA
1 ATTACCGAAATACCCTCGAAGGGTAAA
*
32238787 ATTATCGAAATACCCTCGAAGGGTAAA
1 ATTACCGAAATACCCTCGAAGGGTAAA
** *
32238814 ATTACTAAAATACCCTTGAAGGGTAAA
1 ATTACCGAAATACCCTCGAAGGGTAAA
* *
32238841 ATTACCAAAATACCCTCAAAGGGTAAA
1 ATTACCGAAATACCCTCGAAGGGTAAA
* *
32238868 ATGACCGAAATACCCTCAAAGGGGTAAA
1 ATTACCGAAATACCCTCGAA-GGGTAAA
* **
32238896 ATGACCGTTATACCCT
1 ATTACCGAAATACCCT
32238912 AGGAGATGAA
Statistics
Matches: 205, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
26 5 0.02
27 174 0.85
28 26 0.13
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (27 bp):
ATTACCGAAATACCCTCGAAGGGTAAA
Found at i:32239124 original size:26 final size:26
Alignment explanation
Indices: 32239093--32239172 Score: 106
Period size: 26 Copynumber: 3.1 Consensus size: 26
32239083 CCACATATAA
*
32239093 TGTTACTGGCAGCTTTGTTGCGTTAT
1 TGTTACTGGCAGCTTTGCTGCGTTAT
*
32239119 TGTTACTGGCAGCTCTGCTGCGTTAT
1 TGTTACTGGCAGCTTTGCTGCGTTAT
* * * *
32239145 TATTACTAGCAGCGTTGCTGCGATAT
1 TGTTACTGGCAGCTTTGCTGCGTTAT
32239171 TG
1 TG
32239173 GTGTCTTGGC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.15, C:0.19, G:0.26, T:0.40
Consensus pattern (26 bp):
TGTTACTGGCAGCTTTGCTGCGTTAT
Found at i:32239317 original size:28 final size:28
Alignment explanation
Indices: 32239277--32239361 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
32239267 ATTGAACTAA
* * *
32239277 TTACTGTATTGGGCTAATGCCCATATTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
* * *
32239305 TTACAGTATTGGGTTAAGGCTCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
*
32239333 TTACTGTAATGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
32239361 T
1 T
32239362 ACTTATACTG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTG
Found at i:32240107 original size:3 final size:3
Alignment explanation
Indices: 32240099--32240132 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
32240089 ATGTTATTAA
32240099 ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
32240133 CAAATAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:32240278 original size:18 final size:18
Alignment explanation
Indices: 32240255--32240289 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
32240245 TTATATTATA
32240255 TTATTAAA-AATATAACAT
1 TTATTAAACAATA-AACAT
32240273 TTATTAAACAATAAACA
1 TTATTAAACAATAAACA
32240290 AAACATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
TTATTAAACAATAAACAT
Found at i:32241080 original size:3 final size:3
Alignment explanation
Indices: 32241024--32241158 Score: 184
Period size: 3 Copynumber: 45.7 Consensus size: 3
32241014 GTGAGGTAAG
* * * * * * * *
32241024 TAT TAA TAT TAG TAT TAG TAT TAG TAT TAG TAT TAG TAT TAG TAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
32241072 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
32241118 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
32241159 AGATGAGTGG
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
2 4 0.04
3 110 0.96
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:32242639 original size:6 final size:6
Alignment explanation
Indices: 32242623--32242674 Score: 97
Period size: 6 Copynumber: 8.8 Consensus size: 6
32242613 GGGTGTTACA
32242623 CATTT- CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
32242670 CATTT
1 CATTT
32242675 TTGGAAACCT
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 5 0.11
6 41 0.89
ACGTcount: A:0.17, C:0.31, G:0.00, T:0.52
Consensus pattern (6 bp):
CATTTC
Found at i:32249966 original size:22 final size:21
Alignment explanation
Indices: 32249941--32249984 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
32249931 TGATAAACTT
32249941 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
32249963 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
32249984 T
1 T
32249985 CAACTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:32259609 original size:10 final size:9
Alignment explanation
Indices: 32259596--32259626 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
32259586 TTTTATATAT
32259596 TTTTTAGAAA
1 TTTTTA-AAA
32259606 TTTTTAAAA
1 TTTTTAAAA
32259615 TTTTTAAAA
1 TTTTTAAAA
32259624 TTT
1 TTT
32259627 AAAAGTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 15 0.71
10 6 0.29
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:32270557 original size:42 final size:42
Alignment explanation
Indices: 32270500--32270708 Score: 301
Period size: 42 Copynumber: 5.0 Consensus size: 42
32270490 CGTTTACAGA
* *
32270500 AAAAAAACGCCGCTAAAGGTCATGTTCTTTAGTGGCGCTTAG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* * *
32270542 AAAAAAACACCGCTAAAGGTCATGTTCTTTAGCGGCGCTTAA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
*
32270584 AAAAAAGACGCCGCTAAAGATCATGTTCTTTAGAGGCGCTTAG
1 AAAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* * * *
32270627 ACAAAAACGCCGCTAAAAATCATATTCTTTAGCGGCGCTTGG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* *
32270669 TAAAAAACGCCGCTATAGATCATGTTCTTTAGCGGCGCTT
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
32270709 TCTTCACAAA
Statistics
Matches: 149, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
42 112 0.75
43 37 0.25
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
Found at i:32270600 original size:85 final size:84
Alignment explanation
Indices: 32270499--32270708 Score: 303
Period size: 85 Copynumber: 2.5 Consensus size: 84
32270489 GCGTTTACAG
* * **
32270499 AAAAAAAACGCCGCTAAAGGTCATGTTCTTTAGTGGCGCTTAGAAAAAAACACCGCTAAAGGTCA
1 AAAAAAAACGCCGCTAAAGATCATGTTCTTTAGAGGCGCTTAGAAAAAAACACCGCTAAAAATCA
*
32270564 TGTTCTTTAGCGGCGCTTA
66 TATTCTTTAGCGGCGCTTA
* *
32270583 AAAAAAAGACGCCGCTAAAGATCATGTTCTTTAGAGGCGCTTAGACAAAAACGCCGCTAAAAATC
1 AAAAAAA-ACGCCGCTAAAGATCATGTTCTTTAGAGGCGCTTAGAAAAAAACACCGCTAAAAATC
*
32270648 ATATTCTTTAGCGGCGCTTG
65 ATATTCTTTAGCGGCGCTTA
** * *
32270668 GTAAAAAACGCCGCTATAGATCATGTTCTTTAGCGGCGCTT
1 AAAAAAAACGCCGCTAAAGATCATGTTCTTTAGAGGCGCTT
32270709 TCTTCACAAA
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
84 39 0.35
85 74 0.65
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (84 bp):
AAAAAAAACGCCGCTAAAGATCATGTTCTTTAGAGGCGCTTAGAAAAAAACACCGCTAAAAATCA
TATTCTTTAGCGGCGCTTA
Found at i:32270720 original size:85 final size:84
Alignment explanation
Indices: 32270501--32270770 Score: 299
Period size: 85 Copynumber: 3.2 Consensus size: 84
32270491 GTTTACAGAA
* * * * **
32270501 AAAAAACGCCGCTAAAGGTCATGTTCTTTAGTGGCGCTTAGAAAAAAACACCGCTAAAGGTCATG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGAGGCGCTTAGACAAAAACGCCGCTAAAAATCATG
*
32270566 TTCTTTAGCGGCGCTTAAA
66 TTCTTTAGCGGCGCTTAAT
32270585 AAAAAGACGCCGCTAAAGATCATGTTCTTTAGAGGCGCTTAGACAAAAACGCCGCTAAAAATCAT
1 AAAAA-ACGCCGCTAAAGATCATGTTCTTTAGAGGCGCTTAGACAAAAACGCCGCTAAAAATCAT
* **
32270650 ATTCTTTAGCGGCGCTTGGT
65 GTTCTTTAGCGGCGCTTAAT
* * *** * * **
32270670 AAAAAACGCCGCTATAGATCATGTTCTTTAGCGGCGCTTTCTTCACAAACGCCAC-AAAAAGAAA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGAGGCGC-TTAGACAAAAACGCCGCTAAAAA-TCA
**
32270734 TGTTCTTTAGCGGCGCTTTCTT
64 TGTTCTTTAGCGGCGC-TTAAT
*
32270756 AAAAAACGCCACTAA
1 AAAAAACGCCGCTAA
32270771 TTTCGGGATT
Statistics
Matches: 158, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
84 40 0.25
85 102 0.65
86 16 0.10
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (84 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGAGGCGCTTAGACAAAAACGCCGCTAAAAATCATG
TTCTTTAGCGGCGCTTAAT
Found at i:32270737 original size:127 final size:127
Alignment explanation
Indices: 32270502--32270751 Score: 306
Period size: 127 Copynumber: 2.0 Consensus size: 127
32270492 TTTACAGAAA
** * * *
32270502 AAAAACGCCGCTAAAGGTCATGTTCTTTAGTGGCGCTTAGAAAAAAACACCGCTAAAGGTCATGT
1 AAAAACGCCGCTAAAAATCATATTCTTTAGCGGCGCTTAGAAAAAAACACCGCTAAAGATCATGT
* * *
32270567 TCTTTAGCGGCGCTTAAAAAAAAGACGCCGCTAAAGATCATGTTCTTTAGAGGCGCTTAGAC
66 TCTTTAGCGGCGCTTAAAAAAAAGACGCCACAAAAGATAATGTTCTTTAGAGGCGCTTAGAC
* * * *
32270629 AAAAACGCCGCTAAAAATCATATTCTTTAGCGGCGCTTGGTAAAAAACGCCGCTATAGATCATGT
1 AAAAACGCCGCTAAAAATCATATTCTTTAGCGGCGCTTAGAAAAAAACACCGCTAAAGATCATGT
**** * *
32270694 TCTTTAGCGGCGCTTTCTTCACAA-ACGCCACAAAAAGA-AATGTTCTTTAGCGGCGCTT
66 TCTTTAGCGGCGC-TTAAAAAAAAGACGCCAC-AAAAGATAATGTTCTTTAGAGGCGCTT
32270752 TCTTAAAAAA
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
127 93 0.90
128 10 0.10
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (127 bp):
AAAAACGCCGCTAAAAATCATATTCTTTAGCGGCGCTTAGAAAAAAACACCGCTAAAGATCATGT
TCTTTAGCGGCGCTTAAAAAAAAGACGCCACAAAAGATAATGTTCTTTAGAGGCGCTTAGAC
Found at i:32271163 original size:21 final size:21
Alignment explanation
Indices: 32271139--32271210 Score: 117
Period size: 21 Copynumber: 3.4 Consensus size: 21
32271129 TTCTTTTGAA
32271139 CCTCTGCTTCTCTCGCTGCAG
1 CCTCTGCTTCTCTCGCTGCAG
*
32271160 CCTCTACTTCTCTCGCTGCAG
1 CCTCTGCTTCTCTCGCTGCAG
* *
32271181 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTGCTTCTCTCGCTGCAG
32271202 CCTCTGCTT
1 CCTCTGCTT
32271211 TAAGTTGTAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.04, C:0.46, G:0.17, T:0.33
Consensus pattern (21 bp):
CCTCTGCTTCTCTCGCTGCAG
Found at i:32276734 original size:9 final size:9
Alignment explanation
Indices: 32276720--32276890 Score: 219
Period size: 9 Copynumber: 19.7 Consensus size: 9
32276710 ACCATAAATG
32276720 AGTTATGTA
1 AGTTATGTA
32276729 AGTTATGT-
1 AGTTATGTA
32276737 A-TTATGT-
1 AGTTATGTA
32276744 A-TTATGTA
1 AGTTATGTA
*
32276752 AGTTATTTA
1 AGTTATGTA
32276761 AGTTATGTA
1 AGTTATGTA
*
32276770 AGTTATTTA
1 AGTTATGTA
*
32276779 ATTTATGTA
1 AGTTATGTA
32276788 AGTTATGTA
1 AGTTATGTA
*
32276797 AGTTATTTA
1 AGTTATGTA
*
32276806 ATTTATGTA
1 AGTTATGTA
32276815 AGTTATGTA
1 AGTTATGTA
32276824 AGTTATGTA
1 AGTTATGTA
*
32276833 AGTTATTTA
1 AGTTATGTA
*
32276842 ATTTATGTA
1 AGTTATGTA
32276851 AGTTATGTA
1 AGTTATGTA
32276860 AGTTATGTA
1 AGTTATGTA
*
32276869 GGTTATGT-
1 AGTTATGTA
*
32276877 A-TTATGTT
1 AGTTATGTA
32276885 AGTTAT
1 AGTTAT
32276891 TATGTTATTA
Statistics
Matches: 142, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
7 19 0.13
8 3 0.02
9 120 0.85
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.51
Consensus pattern (9 bp):
AGTTATGTA
Found at i:32276908 original size:20 final size:19
Alignment explanation
Indices: 32276871--32276910 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
32276861 GTTATGTAGG
* *
32276871 TTATGTATTATGTTAGTTA
1 TTATGTATTATATAAGTTA
32276890 TTATGTTATTATATAAGTTA
1 TTATG-TATTATATAAGTTA
32276910 T
1 T
32276911 GCAAGTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (19 bp):
TTATGTATTATATAAGTTA
Found at i:32276982 original size:29 final size:29
Alignment explanation
Indices: 32276891--32276982 Score: 96
Period size: 29 Copynumber: 3.1 Consensus size: 29
32276881 TGTTAGTTAT
32276891 TATGTTATTATATAAGTTATGCAAGTTTC
1 TATGTTATTATATAAGTTATGCAAGTTTC
* * * ** *
32276920 TAT-ATATGTTTATATATTGTATGTTAGTTAC
1 TATGTTAT-TATATA-AGT-TATGCAAGTTTC
32276951 TATGTTATTATATAAGTTATGCAAGTTTC
1 TATGTTATTATATAAGTTATGCAAGTTTC
32276980 TAT
1 TAT
32276983 ATATATATAT
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
28 3 0.06
29 20 0.43
30 4 0.09
31 17 0.36
32 3 0.06
ACGTcount: A:0.30, C:0.05, G:0.13, T:0.51
Consensus pattern (29 bp):
TATGTTATTATATAAGTTATGCAAGTTTC
Found at i:32276991 original size:29 final size:29
Alignment explanation
Indices: 32276899--32277017 Score: 96
Period size: 31 Copynumber: 4.0 Consensus size: 29
32276889 ATTATGTTAT
*
32276899 TATATAAGTTATGCAAGTTTCTATATATG
1 TATATAAGTTATGCAAGTTTCTATATATA
* * ** * *
32276928 TTTATATATTGTATGTTAGTTACTATGT-TA
1 TATATA-AGT-TATGCAAGTTTCTATATATA
32276958 TTATATAAGTTATGCAAGTTTCTATATATA
1 -TATATAAGTTATGCAAGTTTCTATATATA
* * *
32276988 TATATATGTATTATGTAAGTTTATATATAT
1 TATATAAG--TTATGCAAGTTTCTATATAT
32277018 GTTATGATAT
Statistics
Matches: 68, Mismatches: 16, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
29 25 0.37
30 7 0.10
31 36 0.53
ACGTcount: A:0.34, C:0.04, G:0.12, T:0.50
Consensus pattern (29 bp):
TATATAAGTTATGCAAGTTTCTATATATA
Found at i:32277003 original size:60 final size:60
Alignment explanation
Indices: 32276872--32277008 Score: 213
Period size: 60 Copynumber: 2.3 Consensus size: 60
32276862 TTATGTAGGT
* * *
32276872 TATGTATTATGTTAGTTATTATGTTATTATATAAGTTATGCAAGTTTCTATATATGTTTA
1 TATGTATTATGTTAGTTACTATGTTATTATATAAGTTATGCAAGTTTCTATATATATATA
*
32276932 TATAT-TGTATGTTAGTTACTATGTTATTATATAAGTTATGCAAGTTTCTATATATATATA
1 TATGTAT-TATGTTAGTTACTATGTTATTATATAAGTTATGCAAGTTTCTATATATATATA
*
32276992 TATGTATTATGTAAGTT
1 TATGTATTATGTTAGTT
32277009 TATATATATG
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
59 1 0.01
60 67 0.97
61 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.13, T:0.52
Consensus pattern (60 bp):
TATGTATTATGTTAGTTACTATGTTATTATATAAGTTATGCAAGTTTCTATATATATATA
Found at i:32277127 original size:17 final size:15
Alignment explanation
Indices: 32277085--32277125 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
32277075 ATTTTGAAAA
* *
32277085 AAAAATATAGATTTT
1 AAAAATATATACTTT
32277100 AAAAATATATACTTT
1 AAAAATATATACTTT
*
32277115 AAAAATGTATA
1 AAAAATATATA
32277126 TAAATATGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (15 bp):
AAAAATATATACTTT
Found at i:32277308 original size:2 final size:2
Alignment explanation
Indices: 32277301--32277376 Score: 143
Period size: 2 Copynumber: 38.0 Consensus size: 2
32277291 AAATGATGAA
32277301 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
32277343 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32277377 GATTTGCTTG
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 72 1.00
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32280340 original size:42 final size:42
Alignment explanation
Indices: 32280268--32280511 Score: 179
Period size: 42 Copynumber: 5.8 Consensus size: 42
32280258 CCGCTAACGA
*
32280268 CGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCGC
1 CGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGC
* * *
32280310 CGCTGAATAACATGTTCTTTAGCGGTG-TTTTTTCATAAGCGC
1 CGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTC-TAAGCGC
* * ** *
32280352 CGCTAAAGAACATGATCTCTAGTTGCGTTTTTTAT-TAAGCGT
1 CGCTAAAGAACATGTTCTTTAGCGGCGTTTTTT-TCTAAGCGC
* * * * * ** *
32280394 CGCTAAAGAGCATGTTCTTTAACAGCGCTTTGTATAAAAACGC
1 CGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTTCTAAGCGC
* * ** * **
32280437 CGCTAGAGATCATAATCTTTAGCGGCGCTTTTTTTAC-AAACAT
1 CGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTT-CTAAGCGC
* * *
32280480 CGCTACAGAACATGGTCTTTAGCGGCGCTTTT
1 CGCTAAAGAACATGTTCTTTAGCGGCGTTTTT
32280512 GTACAAAAAC
Statistics
Matches: 157, Mismatches: 39, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
41 7 0.04
42 82 0.52
43 67 0.43
44 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (42 bp):
CGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGC
Found at i:32284088 original size:51 final size:51
Alignment explanation
Indices: 32284026--32284454 Score: 335
Period size: 51 Copynumber: 8.4 Consensus size: 51
32284016 TTTGGGGATT
* * * *
32284026 TTCACACAGTACTACCCATGTTACTTTAATCATTCGATACACGTAGTAGCC
1 TTCACACAGTACTACACACGTGACATTAATCATTCGATACACGTAGTAGCC
* * * *
32284077 TTCACATAGTACTACACACGTGATCA--AGT-TTTACTG-TTCACGTAGTAGCC
1 TTCACACAGTACTACACACGTGA-CATTAATCATT-C-GATACACGTAGTAGCC
* * * * *
32284127 TTCACATAGTACTACACACGTGATCA--AAGCTTTTCGGTACACATAGTAGCC
1 TTCACACAGTACTACACACGTGA-CATTAATC-ATTCGATACACGTAGTAGCC
** * * * * * *
32284178 TTCACTTTA-TACTACACATGTGGCCATCATTTA-TCGATACACATAGTAGCC
1 TTCAC-ACAGTACTACACACGT-GACATTAATCATTCGATACACGTAGTAGCC
* * * *
32284229 TTCACACAGTACTACACACGTGACCA--AAGCTTCTCGGTACACATAGTAGCC
1 TTCACACAGTACTACACACGTGA-CATTAATCAT-TCGATACACGTAGTAGCC
** * * *
32284280 TTCACTTAGTACTACACATGTGACCATTATTTA-TCGATACACGTAGTAGCC
1 TTCACACAGTACTACACACGTGA-CATTAATCATTCGATACACGTAGTAGCC
* * *
32284331 TTCACACAGTACTACACACGTGACCATTATTTA-CCGATACACGTAGTAGCC
1 TTCACACAGTACTACACACGTGA-CATTAATCATTCGATACACGTAGTAGCC
* * *
32284382 TTCACACAGTACTACACACGTGACCATTATTTA-CCGATACACGTAGTAGCC
1 TTCACACAGTACTACACACGTGA-CATTAATCATTCGATACACGTAGTAGCC
32284433 TTCACACAGTACTACACACGTG
1 TTCACACAGTACTACACACGTG
32284455 TTCATCGATA
Statistics
Matches: 320, Mismatches: 42, Indels: 32
0.81 0.11 0.08
Matches are distributed among these distances:
49 3 0.01
50 46 0.14
51 262 0.82
52 7 0.02
53 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.28
Consensus pattern (51 bp):
TTCACACAGTACTACACACGTGACATTAATCATTCGATACACGTAGTAGCC
Found at i:32284193 original size:26 final size:26
Alignment explanation
Indices: 32284164--32284233 Score: 83
Period size: 26 Copynumber: 2.7 Consensus size: 26
32284154 AGCTTTTCGG
32284164 TACACATAGTAGCCTTCACTTTAT-A
1 TACACATAGTAGCCTTCACTTTATCA
* *
32284189 CTACACAT-GTGGCCATCA-TTTATCGA
1 -TACACATAGTAGCCTTCACTTTATC-A
32284215 TACACATAGTAGCCTTCAC
1 TACACATAGTAGCCTTCAC
32284234 ACAGTACTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
24 5 0.14
25 15 0.42
26 16 0.44
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.31
Consensus pattern (26 bp):
TACACATAGTAGCCTTCACTTTATCA
Found at i:32284248 original size:102 final size:102
Alignment explanation
Indices: 32284058--32284454 Score: 518
Period size: 102 Copynumber: 3.9 Consensus size: 102
32284048 ACTTTAATCA
* * * * * * *
32284058 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTA-CTG-TTCACGT
1 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGA-CCATTATTTATC-GATACACGT
* *
32284120 AGTAGCCTTCACATAGTACTACACACGTGATCAAAGCTT
64 AGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
* * *
32284159 TTCGGTACACATAGTAGCCTTCACTTTA-TACTACACATGTGGCCATCATTTATCGATACACATA
1 TTCGGTACACATAGTAGCCTTCAC-TTAGTACTACACATGTGACCATTATTTATCGATACACGTA
32284223 GTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
65 GTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
*
32284261 CTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATACACGTAG
1 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATACACGTAG
*
32284326 TAGCCTTCACACAGTACTACACACGTGACCATTA--TT
66 TAGCCTTCACACAGTACTACACACGTGACCA-AAGCTT
* * * ** * *
32284362 TACCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATTATTTACCGATACACGTA
1 T-TCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATACACGTA
32284427 GTAGCCTTCACACAGTACTACACACGTG
65 GTAGCCTTCACACAGTACTACACACGTG
32284455 TTCATCGATA
Statistics
Matches: 264, Mismatches: 25, Indels: 13
0.87 0.08 0.04
Matches are distributed among these distances:
100 2 0.01
101 44 0.17
102 217 0.82
103 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (102 bp):
TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATACACGTAG
TAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
Found at i:32284344 original size:153 final size:151
Alignment explanation
Indices: 32284059--32284454 Score: 485
Period size: 153 Copynumber: 2.6 Consensus size: 151
32284049 CTTTAATCAT
* * * * *
32284059 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAGTTTTACTGTTCACGTAGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGTTCT-CGGTACACGTAGT
* * **
32284123 AGCCTTCACATAGTACTACACACGTGATCAAAGCTTTTCGGTACACATAGTAGCCTTCACTTTAT
65 AGCCTTCACATAGTACTACACACGTGACCAAA-CTTTTCGATACACATAGTAGCCTTCACTACAT
* *
32284188 ACTACACATGTGGCCATCATTTA
129 ACTACACACGTGACCATCATTTA
* *
32284211 TCGATACACATAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAG-TTCTCGGTACACGTAGT
* * * *
32284276 AGCCTTCACTTAGTACTACACATGTGACCATTA-TTTATCGATACACGTAGTAGCCTTCAC-ACA
65 AGCCTTCACATAGTACTACACACGTGACCA-AACTTT-TCGATACACATAGTAGCCTTCACTACA
*
32284339 GTACTACACACGTGACCATTATTTA
128 -TACTACACACGTGACCATCATTTA
* * * *
32284364 CCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATTATTTAC-CGATACACGTAG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCA-AAGTT-CTCGGTACACGTAG
*
32284428 TAGCCTTCACACAGTACTACACACGTG
64 TAGCCTTCACATAGTACTACACACGTG
32284455 TTCATCGATA
Statistics
Matches: 210, Mismatches: 27, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
152 44 0.21
153 160 0.76
154 6 0.03
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (151 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGTTCTCGGTACACGTAGTA
GCCTTCACATAGTACTACACACGTGACCAAACTTTTCGATACACATAGTAGCCTTCACTACATAC
TACACACGTGACCATCATTTA
Found at i:32287235 original size:46 final size:46
Alignment explanation
Indices: 32287168--32287398 Score: 426
Period size: 46 Copynumber: 5.0 Consensus size: 46
32287158 CATGGCAAAG
32287168 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
32287214 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
32287260 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
32287306 TATGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
32287352 TGTGAAAAGTAGGTATGGTATTTCCGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
32287398 T
1 T
32287399 ATAGCAATGT
Statistics
Matches: 180, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 180 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
Found at i:32294076 original size:10 final size:11
Alignment explanation
Indices: 32294055--32294097 Score: 65
Period size: 10 Copynumber: 4.2 Consensus size: 11
32294045 AAGTAATATT
32294055 TATAAGAATTA
1 TATAAGAATTA
32294066 TATAA-AATTA
1 TATAAGAATTA
32294076 TA-AAGAATTA
1 TATAAGAATTA
32294086 TATAA-AATTA
1 TATAAGAATTA
32294096 TA
1 TA
32294098 AAGTTTAGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.07
10 21 0.70
11 7 0.23
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (11 bp):
TATAAGAATTA
Found at i:32294083 original size:20 final size:20
Alignment explanation
Indices: 32294054--32294100 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
32294044 TAAGTAATAT
32294054 TTAT-AAGAATTATATAAAA
1 TTATAAAGAATTATATAAAA
32294073 TTATAAAGAATTATATAAAA
1 TTATAAAGAATTATATAAAA
32294093 TTATAAAG
1 TTATAAAG
32294101 TTTAGGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (20 bp):
TTATAAAGAATTATATAAAA
Found at i:32294389 original size:14 final size:15
Alignment explanation
Indices: 32294358--32294391 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
32294348 TCTGACCCCA
*
32294358 AAATCTCTAAACCTT
1 AAATCTCTAAACCCT
32294373 AAATCTC-AAACCCT
1 AAATCTCTAAACCCT
32294387 AAATC
1 AAATC
32294392 CATACAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.26
Consensus pattern (15 bp):
AAATCTCTAAACCCT
Found at i:32295189 original size:21 final size:20
Alignment explanation
Indices: 32295165--32295249 Score: 53
Period size: 21 Copynumber: 4.0 Consensus size: 20
32295155 ACTAGTTAAT
32295165 CTAAACTGTAAACCATAAACC
1 CTAAACT-TAAACCATAAACC
* * *
32295186 CTAAAATCATAAACCCTTAACAC
1 CT-AAA-CTTAAACCATAAAC-C
* * *
32295209 ATAACCTTAAACCTTAAACC
1 CTAAACTTAAACCATAAACC
* *
32295229 CCAACCTTTAAACCATAAACC
1 CTAAAC-TTAAACCATAAACC
32295250 ATATACCAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
20 5 0.10
21 26 0.53
22 15 0.31
23 3 0.06
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.21
Consensus pattern (20 bp):
CTAAACTTAAACCATAAACC
Found at i:32295190 original size:14 final size:14
Alignment explanation
Indices: 32295173--32295252 Score: 56
Period size: 14 Copynumber: 5.6 Consensus size: 14
32295163 ATCTAAACTG
32295173 TAAACCATAAACCC
1 TAAACCATAAACCC
*
32295187 TAAAATCATAAACCC
1 T-AAACCATAAACCC
* *
32295202 TTAACACAT-AACCT
1 TAAAC-CATAAACCC
*
32295216 TAAACCTTAAACCC
1 TAAACCATAAACCC
* * *
32295230 -CAACCTTTAAACCA
1 TAAACC-ATAAACCC
32295244 TAAACCATA
1 TAAACCATA
32295253 TACCAAATAC
Statistics
Matches: 50, Mismatches: 11, Indels: 10
0.70 0.15 0.14
Matches are distributed among these distances:
13 6 0.12
14 24 0.48
15 20 0.40
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:32295520 original size:115 final size:112
Alignment explanation
Indices: 32295309--32295866 Score: 451
Period size: 115 Copynumber: 4.9 Consensus size: 112
32295299 ATGCATGGTT
* * *
32295309 AAGACCAAAACTCTGCGTTTTGGTTAAGATATTTTCCGGCGTTTCTCAAAAAGCGCCGCTAATAC
1 AAGA-CAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATAC
* * * *
32295374 TATGCTTTAGCGGTGATTTCTCGT-GGACGCCACTAATTCCAGTATACATC
65 -ATGCTTTAGCGGCG-TTTCCCATAAG-CGCCACTAATTCCAGTATACATC
* * * * *
32295424 AAGACTTAAACGCTGCGTTTTTGTTAATATATTTTGTGGCGCTTCTCAAAAAGCGCCGCTAATAG
1 AAGAC-AAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATA-
* * *
32295489 CATGCTTTAGCGGCGTTCTCCCATAAGCGCCACTAATTCTAATATACCTC
64 CATGCTTTAGCGGCGTT-TCCCATAAGCGCCACTAATTCCAGTATACATC
* * * * ****
32295539 ATGGA-AAAACTCTGCGTTTTGGTGAGCATATTTTGCGGCGCTTTTTGCCAAGCGCCGCTAATAC
1 A-AGACAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATAC
* *** * ** *
32295603 TATGATTTAGCGGCGTTTTTTAATATA-CGCCACAAATAACTGTATACATC
65 -ATGCTTTAGCGGCG-TTTCCCATA-AGCGCCACTAATTCCAGTATACATC
* * * * * **
32295653 AAGACAAAAATGCTGTGTTTTGGTTACCAAATTTTGCGGTGCTTCTCCGAAAGCGCCGCTAATAG
1 AAGACAAAACT-CTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATA-
* * ** ** *
32295718 TATGCCTTAGCGGCGTGTTCCC-TTTGCGCCACTAATTCTTGTATACCTC
64 CATGCTTTAGCGGCGT-TTCCCATAAGCGCCACTAATTCCAGTATACATC
* * *
32295767 AAGACCAAACTCTGTGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAA-CGCCGCTAATAT
1 AAGACAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCA-AAAAGCGCCGCTAATA-
** * * *
32295831 TTTGCTTTAGCGACGTTTTCCCTTAAACGCCACTAA
64 CATGCTTTAGCGGCG-TTTCCCATAAGCGCCACTAA
32295867 ATGTAACATA
Statistics
Matches: 349, Mismatches: 78, Indels: 33
0.76 0.17 0.07
Matches are distributed among these distances:
113 62 0.18
114 131 0.38
115 152 0.44
116 4 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (112 bp):
AAGACAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATACA
TGCTTTAGCGGCGTTTCCCATAAGCGCCACTAATTCCAGTATACATC
Found at i:32295716 original size:229 final size:228
Alignment explanation
Indices: 32295309--32295829 Score: 586
Period size: 229 Copynumber: 2.3 Consensus size: 228
32295299 ATGCATGGTT
*
32295309 AAGACCAAAACTCTGCGTTTTGGTTAAGATATTTTCCGGCG-TTTCTCAAAAAGCGCCGCTAATA
1 AAGA-CAAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTCTC-AAAAGCGCCGCTAATA
* * ** * * ** **
32295373 CTATGCTTTAGCGGTGATTTCTCGTGGACGCCACTAATTCCAGTATACATCAAGACTTAAACGCT
64 CTATGATTTAGCGGCGATTTCTAATAGACGCCACAAATAACAGTATACATCAAGACAAAAACGCT
* * * * *
32295438 GCGTTTTTGTTAATATATTTTGTGGCGCTTCTCAAAAAGCGCCGCTAATAGCATGCTTTAGCGGC
129 GCGTTTTGGTTAACAAATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATAGCATGCCTTAGCGGC
32295503 GT-TCTCCCATAAGCGCCACTAATTCTAATATACCTC
194 GTGT-TCCC-TAAGCGCCACTAATTCTAATATACCTC
* * * *
32295539 ATGGA-AAAACTCTGCGTTTTGG-TGAGCATATTTTGCGGCGCTTTTTGC-CAAGCGCCGCTAAT
1 A-AGACAAAACTCTGCGTTTTGGTTAAG-ATATTTTGCGGCGCTTTCT-CAAAAGCGCCGCTAAT
* * * * *
32295601 ACTATGATTTAGCGGCGTTTTTTAATATACGCCACAAATAACTGTATACATCAAGACAAAAATGC
63 ACTATGATTTAGCGGCGATTTCTAATAGACGCCACAAATAACAGTATACATCAAGACAAAAACGC
* * * ** *
32295666 TGTGTTTTGGTTACCAAATTTTGCGGTGCTTCTCCGAAAGCGCCGCTAATAGTATGCCTTAGCGG
128 TGCGTTTTGGTTAACAAATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATAGCATGCCTTAGCGG
** **
32295731 CGTGTTCCCTTTGCGCCACTAATTCTTGTATACCTC
193 CGTGTTCCCTAAGCGCCACTAATTCTAATATACCTC
* * *
32295767 AAGACCAAACTCTGTGTTTTGGTTAAGATATTTTGCGGCGC-TTCTCACAAAACGCCGCTAATA
1 AAGACAAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTCTCA-AAAGCGCCGCTAATA
32295830 TTTTGCTTTA
Statistics
Matches: 240, Mismatches: 42, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
226 1 0.00
227 5 0.02
228 69 0.29
229 156 0.65
230 6 0.03
231 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (228 bp):
AAGACAAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTCTCAAAAGCGCCGCTAATACT
ATGATTTAGCGGCGATTTCTAATAGACGCCACAAATAACAGTATACATCAAGACAAAAACGCTGC
GTTTTGGTTAACAAATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATAGCATGCCTTAGCGGCGT
GTTCCCTAAGCGCCACTAATTCTAATATACCTC
Found at i:32295937 original size:228 final size:227
Alignment explanation
Indices: 32295309--32295937 Score: 581
Period size: 229 Copynumber: 2.7 Consensus size: 227
32295299 ATGCATGGTT
* *
32295309 AAGACCAAAACTCTGCGTTTTGGTTAAGATATTTTCCGGCGTTTCTCA-AAAAGCGCCGCTAATA
1 AAGACC-AAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAA-CGCCGCTAATA
* * * ** ** **
32295373 CTATGCTTTAGCGGTGATTTCTCGTGGACGCCACT-AATTCCAGTATACATCAAGACTTAAACGC
64 CTATGCTTTAGCGGCGTTTTCTCATAAACGCCACTAAATT--AACATACATCAAGACAAAAACGC
* * * * *
32295437 TGCGTTTTTGTTAATATATTTTGTGGCGCTTCTCAAAAAGCGCCGCTAATAGCATGCTTTAGCGG
127 TGCGTTTTGGTTAACATATTTTGTGGCG-TTTTCCAAAAGCGCCGCTAATAGCATGCCTTAGCGG
32295502 CGTTCTCCCATAAGCGCCACTAATTCTAATATACCTC
191 CGTTCTCCCATAAGCGCCACTAATTCTAATATACCTC
* * * * ** * *
32295539 ATGGA-AAAACTCTGCGTTTTGG-TGAGCATATTTTGCGGCGCTTTTTGCCAAGCGCCGCTAATA
1 A-AGACCAAACTCTGCGTTTTGGTTAAG-ATATTTTGCGGCGCTTCTCACAAAACGCCGCTAATA
* * * * *
32295602 CTATGATTTAGCGGCGTTTTTTAATATACGCCAC-AAA-TAACTGTATACATCAAGACAAAAATG
64 CTATGCTTTAGCGGCGTTTTCTCATAAACGCCACTAAATTAAC---ATACATCAAGACAAAAACG
* * * * * * * *
32295665 CTGTGTTTTGGTTACCAAATTTTGCGGTGCTTCTCCGAAAGCGCCGCTAATAGTATGCCTTAGCG
126 CTGCGTTTTGGTTAACATATTTTGTGGCG-TTTTCCAAAAGCGCCGCTAATAGCATGCCTTAGCG
** **
32295730 GCGTGT-TCCC-TTTGCGCCACTAATTCTTGTATACCTC
190 GCGT-TCTCCCATAAGCGCCACTAATTCTAATATACCTC
* *
32295767 AAGACCAAACTCTGTGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCCGCTAATATT
1 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCCGCTAATACT
* * * * * * *
32295832 TTGCTTTAGCGACGTTTTCCCTTAAACGCCACTAAATGTAACATACACCAAGACCAAAACGGTGC
66 ATGCTTTAGCGGCGTTTTCTCATAAACGCCACTAAAT-TAACATACATCAAGACAAAAACGCTGC
** ** *
32295897 ACTTTGGTTAGGATATTTTGTGGCGTTTTCCCATAAGCGCC
130 GTTTTGGTTAACATATTTTGTGGCGTTTT-CCAAAAGCGCC
32295938 ATAAATTCTA
Statistics
Matches: 314, Mismatches: 71, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
226 1 0.00
227 5 0.02
228 144 0.46
229 154 0.49
230 4 0.01
231 6 0.02
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (227 bp):
AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCCGCTAATACT
ATGCTTTAGCGGCGTTTTCTCATAAACGCCACTAAATTAACATACATCAAGACAAAAACGCTGCG
TTTTGGTTAACATATTTTGTGGCGTTTTCCAAAAGCGCCGCTAATAGCATGCCTTAGCGGCGTTC
TCCCATAAGCGCCACTAATTCTAATATACCTC
Found at i:32297661 original size:74 final size:73
Alignment explanation
Indices: 32297502--32297641 Score: 172
Period size: 74 Copynumber: 1.9 Consensus size: 73
32297492 GCGCTTACAT
* *
32297502 AAAAACGCCACTAAATCTCCAAAAGCTCAAAAAACGGCGTCGTTAGGCTTAGGTATTTTTGTGGC
1 AAAAACGCCGCTAAATCTCCAAAAGCTCAAAAAACGGCGTCGTTAGGCTTAGGTATCTTTGTGGC
*
32297567 GCCTAACT
66 GCCTAACC
* * * * * * * *
32297575 AAAAACACCGCTACATCTGCGAAATGCTCAGAAAACGGCGTCGTTGGGCTTATGTCTCTTTGTGG
1 AAAAACGCCGCTAAATCT-CCAAAAGCTCAAAAAACGGCGTCGTTAGGCTTAGGTATCTTTGTGG
32297640 CG
65 CG
32297642 TTTTACCGTA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
73 15 0.27
74 41 0.73
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (73 bp):
AAAAACGCCGCTAAATCTCCAAAAGCTCAAAAAACGGCGTCGTTAGGCTTAGGTATCTTTGTGGC
GCCTAACC
Found at i:32297881 original size:114 final size:113
Alignment explanation
Indices: 32297594--32297881 Score: 312
Period size: 113 Copynumber: 2.5 Consensus size: 113
32297584 GCTACATCTG
* * * * * * * *
32297594 CGAAATGCTCAGAAAACGGCGTCGTTGGGCTTATGTCTCTTTGTGGCGTTTTACCGTAAACGCCG
1 CGAAA-GCTCAGAAAACGACGTCGTTGGGCTTAGGTAT-TTTGTGGCGCTTTATCGAAAACACCA
* *
32297659 CTAAAGCCCTGAGCGTTAGCGGCGCTTACCTAAAAACGCCGCTAAATCCC
64 CTAAAGCCCTGAGCCTTAGCGGCGCTTACCTAAAAACGCCACTAAATCCC
* * * * * *
32297709 TGAAAGCTCAG-AAAC-AGCGTCGTTGGGCTTACGTTTTTTTGTGGTGCTTTCTCAAAAACACCA
1 CGAAAGCTCAGAAAACGA-CGTCGTTGGGCTTA-GGTATTTTGTGGCGCTTTATCGAAAACACCA
* *
32297772 CTAAATG-CCTGAGCCTTAGCGGCGCTTTCTTAAAAAACGCCACTAAATCCC
64 CTAAA-GCCCTGAGCCTTAGCGGCGCTTACCT-AAAAACGCCACTAAATCCC
* * *
32297823 CGAAAGCTCAGAAAACGACGTCGTTGGGATTAGGTATTTTGCGGCGCTTTATGGAAAAC
1 CGAAAGCTCAGAAAACGACGTCGTTGGGCTTAGGTATTTTGTGGCGCTTTATCGAAAAC
32297882 GCCGCTAATG
Statistics
Matches: 141, Mismatches: 26, Indels: 13
0.78 0.14 0.07
Matches are distributed among these distances:
113 62 0.44
114 57 0.40
115 21 0.15
116 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (113 bp):
CGAAAGCTCAGAAAACGACGTCGTTGGGCTTAGGTATTTTGTGGCGCTTTATCGAAAACACCACT
AAAGCCCTGAGCCTTAGCGGCGCTTACCTAAAAACGCCACTAAATCCC
Found at i:32299133 original size:25 final size:25
Alignment explanation
Indices: 32299098--32299145 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
32299088 TTGTAAAGAG
32299098 AAAATTCTCTAAAGAGATTATTCCAA
1 AAAATTCTCTAAAGAGATT-TTCCAA
*
32299124 AAAATT-TCTAAAGATATTTTCC
1 AAAATTCTCTAAAGAGATTTTCC
32299146 TGGTTTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 11 0.52
26 6 0.29
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (25 bp):
AAAATTCTCTAAAGAGATTTTCCAA
Found at i:32306570 original size:16 final size:16
Alignment explanation
Indices: 32306549--32306597 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
32306539 ATTCTAAAAA
*
32306549 TAATATTATTTTAGTT
1 TAATATTATTTTAATT
*
32306565 TAATATTAAATTTAATT
1 TAATATT-ATTTTAATT
*
32306582 TAATACTTATCTTAAT
1 TAATA-TTATTTTAAT
32306598 AGTATTTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 7 0.26
17 18 0.67
18 2 0.07
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.55
Consensus pattern (16 bp):
TAATATTATTTTAATT
Found at i:32311652 original size:16 final size:16
Alignment explanation
Indices: 32311631--32311685 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
32311621 GTTTGGTTCA
* *
32311631 CTGTAATTGAATAGGG
1 CTGTAATGGAATAGAG
32311647 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
32311663 TTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
32311679 CTGTAAT
1 CTGTAAT
32311686 AGCATTCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:32311849 original size:26 final size:25
Alignment explanation
Indices: 32311800--32311850 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
32311790 ATTGTTATTG
*
32311800 TTATTGTTATTAAATTTTAATAAAA
1 TTATTGTTAATAAATTTTAATAAAA
* *
32311825 TTATTGTTAAATATATTTTATTAAAA
1 TTATTGTT-AATAAATTTTAATAAAA
32311851 AATAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (25 bp):
TTATTGTTAATAAATTTTAATAAAA
Found at i:32311886 original size:59 final size:57
Alignment explanation
Indices: 32311813--32311948 Score: 164
Period size: 59 Copynumber: 2.3 Consensus size: 57
32311803 TTGTTATTAA
* * * * * *
32311813 ATTTTAATAAAATTATTGTTAAATATATTTTATTAAAAAATAATAAATAATTTAATCAT
1 ATTTTAATATAATTATTATTAAATAAAATTTA--AAAAAATAATAAATAATTTAATAAC
* * *
32311872 ATTTTAACATAATTATTATTAAATAAAATTTAATAAAATAATATATAATTTAATAAC
1 ATTTTAATATAATTATTATTAAATAAAATTTAAAAAAATAATAAATAATTTAATAAC
32311929 ATTCTTAATATAATTATTAT
1 ATT-TTAATATAATTATTAT
32311949 ATGAATTAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
57 24 0.36
58 15 0.23
59 27 0.41
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.46
Consensus pattern (57 bp):
ATTTTAATATAATTATTATTAAATAAAATTTAAAAAAATAATAAATAATTTAATAAC
Found at i:32318090 original size:27 final size:27
Alignment explanation
Indices: 32318051--32318198 Score: 165
Period size: 27 Copynumber: 5.5 Consensus size: 27
32318041 GCCATAACAT
* *
32318051 TCATTTTATCCTATGGGGGCATTTTGA
1 TCATTTTACCCTATGGGGGTATTTTGA
* * *
32318078 TCATTTTACCCTATAGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTTGA
* * *
32318105 TCATTCTACCCTAT-GAGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTTGA
* *
32318131 TCATTTTACGCTATGGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTTGA
*
32318158 TCATTTTATCCTATGGGGGTATTTCTG-
1 TCATTTTACCCTATGGGGGTATTT-TGA
*
32318185 TCACTTTACCCTAT
1 TCATTTTACCCTAT
32318199 TTTGGGGTCT
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 22 0.22
27 78 0.76
28 2 0.02
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTTGA
Found at i:32318139 original size:53 final size:54
Alignment explanation
Indices: 32318051--32318198 Score: 165
Period size: 53 Copynumber: 2.8 Consensus size: 54
32318041 GCCATAACAT
* * * * *
32318051 TCATTTTATCCTATGGGGGCATTTTGATCATTTTACCCTATAGGGGTATTTCGG
1 TCATTCTACCCTATGGAGGTATTTCGATCATTTTACCCTATAGGGGTATTTCGG
* * *
32318105 TCATTCTACCCTAT-GAGGTATTTCGATCATTTTACGCTATGGGGGTATTTTGG
1 TCATTCTACCCTATGGAGGTATTTCGATCATTTTACCCTATAGGGGTATTTCGG
* * * *
32318158 TCATTTTATCCTATGGGGGTATTTCTG-TCACTTTACCCTAT
1 TCATTCTACCCTATGGAGGTATTTC-GATCATTTTACCCTAT
32318199 TTTGGGGTCT
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 45 0.57
54 33 0.42
55 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (54 bp):
TCATTCTACCCTATGGAGGTATTTCGATCATTTTACCCTATAGGGGTATTTCGG
Found at i:32318162 original size:80 final size:80
Alignment explanation
Indices: 32318051--32318198 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 80
32318041 GCCATAACAT
32318051 TCATTTTATCCTATGGGGGCATTTTGATCATTTTACCCTATAGGGGTATTTCGGTCA-TTCTACC
1 TCATTTTATCCTATGGGGGCATTTTGATCATTTTACCCTATAGGGGTATTTCGGTCACTT-TACC
32318115 CTATGAGGTATTTCGA
65 CTATGAGGTATTTCGA
* * * * *
32318131 TCATTTTA-CGCTATGGGGGTATTTTGGTCATTTTATCCTATGGGGGTATTTCTGTCACTTTACC
1 TCATTTTATC-CTATGGGGGCATTTTGATCATTTTACCCTATAGGGGTATTTCGGTCACTTTACC
32318195 CTAT
65 CTAT
32318199 TTTGGGGTCT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
79 1 0.02
80 58 0.95
81 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (80 bp):
TCATTTTATCCTATGGGGGCATTTTGATCATTTTACCCTATAGGGGTATTTCGGTCACTTTACCC
TATGAGGTATTTCGA
Found at i:32334511 original size:27 final size:27
Alignment explanation
Indices: 32334496--32334613 Score: 139
Period size: 28 Copynumber: 4.3 Consensus size: 27
32334486 TAAAATTTGT
*
32334496 AAAATAGGGG-AAAACTGTAAAATCTA
1 AAAATAGGGGAAAAACTATAAAATCTA
* *
32334522 AAAATAGGGGCAAAATTATAAAATCTA
1 AAAATAGGGGAAAAACTATAAAATCTA
*
32334549 AAAATCAGGGGAAAAATTATAAAATCTAA
1 AAAAT-AGGGGAAAAACTATAAAATCT-A
* * *
32334578 AAAATAGTGGCAAAACTATAAAATTTGA
1 AAAATAGGGGAAAAACTATAAAATCT-A
32334606 AAAATAGG
1 AAAATAGG
32334614 AGACACACGA
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 10 0.12
27 19 0.24
28 45 0.56
29 6 0.08
ACGTcount: A:0.56, C:0.07, G:0.16, T:0.21
Consensus pattern (27 bp):
AAAATAGGGGAAAAACTATAAAATCTA
Found at i:32344092 original size:3 final size:3
Alignment explanation
Indices: 32344084--32344163 Score: 151
Period size: 3 Copynumber: 26.3 Consensus size: 3
32344074 TTGAACATAC
32344084 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
32344132 ATA ATA ATA ATA ATA ATA ATA ATA ATA CATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA A
32344164 AAACATGCAT
Statistics
Matches: 76, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 73 0.96
4 3 0.04
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:32344368 original size:93 final size:90
Alignment explanation
Indices: 32344268--32344447 Score: 236
Period size: 93 Copynumber: 2.0 Consensus size: 90
32344258 TTTTCTTTTT
* * *
32344268 GCACTCAATTGAACT-CTTGAACTTTCAAAATGCATAAAAAAAAGCCCTTAAACTTCTTCAAAAA
1 GCACTCAATTGAA-TACTTAAACTTTCAAAATGCATAAAAAAAA-CCCTCAAAATTCTTCAAAAA
*
32344332 AAGTAATTAAGCCCCTACTTCTTTTTTGC
64 AA-CAATTAAGCCCCTAC-TCTTTTTTGC
* * * * *
32344361 GCACTCAATTGGATACTTAAAGTTTCAAAATGTATAAAAAAGACCCTCAAAATTTTTCAAAAAAA
1 GCACTCAATTGAATACTTAAACTTTCAAAATGCATAAAAAAAACCCTCAAAATTCTTCAAAAAAA
32344426 CAATTAAGCCCCTACTCTTTTT
66 CAATTAAGCCCCTACTCTTTTT
32344448 AAAAATTAGA
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
90 7 0.09
91 14 0.18
92 20 0.26
93 36 0.47
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (90 bp):
GCACTCAATTGAATACTTAAACTTTCAAAATGCATAAAAAAAACCCTCAAAATTCTTCAAAAAAA
CAATTAAGCCCCTACTCTTTTTTGC
Found at i:32344577 original size:15 final size:15
Alignment explanation
Indices: 32344557--32344586 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32344547 AGAATTTTTT
*
32344557 ATAAAAATTGTAAAA
1 ATAAAAAATGTAAAA
32344572 ATAAAAAATGTAAAA
1 ATAAAAAATGTAAAA
32344587 TTTTAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (15 bp):
ATAAAAAATGTAAAA
Found at i:32344756 original size:9 final size:9
Alignment explanation
Indices: 32344742--32344892 Score: 67
Period size: 9 Copynumber: 16.1 Consensus size: 9
32344732 TTTTGGTATA
32344742 ATAATTTTT
1 ATAATTTTT
32344751 ATAATTTTTTT
1 ATAA--TTTTT
* **
32344762 ACAAAATTT
1 ATAATTTTT
*
32344771 ATATTTCTTT
1 ATAATT-TTT
*
32344781 AAAATTTTT
1 ATAATTTTT
*
32344790 AT--TTCTT
1 ATAATTTTT
*
32344797 ATGAATTTAT
1 AT-AATTTTT
*
32344807 A-AAATTTT
1 ATAATTTTT
32344815 ATAATTATTT
1 ATAATT-TTT
32344825 -TATATTTCTAT
1 ATA-ATTT-T-T
*
32344836 ATATTTTTT
1 ATAATTTTT
32344845 ATAAATTTTT
1 AT-AATTTTT
*
32344855 ACAATTTTTT
1 ATAA-TTTTT
*
32344865 ATGATTTTT
1 ATAATTTTT
*
32344874 ATATTTTTT
1 ATAATTTTT
*
32344883 CTAATTTTT
1 ATAATTTTT
32344892 A
1 A
32344893 ATATTTTGAT
Statistics
Matches: 102, Mismatches: 26, Indels: 28
0.65 0.17 0.18
Matches are distributed among these distances:
7 6 0.06
8 6 0.06
9 43 0.42
10 33 0.32
11 12 0.12
12 2 0.02
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:32344786 original size:17 final size:17
Alignment explanation
Indices: 32344764--32344796 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32344754 ATTTTTTTAC
32344764 AAAATTTATATTTCTTT
1 AAAATTTATATTTCTTT
*
32344781 AAAATTTTTATTTCTT
1 AAAATTTATATTTCTT
32344797 ATGAATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
AAAATTTATATTTCTTT
Found at i:32344844 original size:19 final size:18
Alignment explanation
Indices: 32344809--32344964 Score: 72
Period size: 18 Copynumber: 8.4 Consensus size: 18
32344799 GAATTTATAA
32344809 AATTTTATAATTATTTTAT
1 AATTTTATAATT-TTTTAT
32344828 -ATTTCTATATATTTTTTAT
1 AATTT-TATA-ATTTTTTAT
*
32344847 AAATTTTTACAATTTTTTAT
1 -AA-TTTTATAATTTTTTAT
* *
32344867 GATTTT-TATATTTTTTCT
1 AATTTTATA-ATTTTTTAT
*
32344885 AATTTT-TAATATTTTGAT
1 AATTTTATAAT-TTTTTAT
* ** *
32344903 -TTTTCTATTAAAATTTAAT
1 AATTT-TA-TAATTTTTTAT
*
32344922 AATATTTATAGATTTTAT-T
1 AAT-TTTATA-ATTTTTTAT
* *
32344941 GATTTTA-ATTTTTTTAT
1 AATTTTATAATTTTTTAT
32344958 AATTTTA
1 AATTTTA
32344965 ATTAAAGCAG
Statistics
Matches: 103, Mismatches: 20, Indels: 30
0.67 0.13 0.20
Matches are distributed among these distances:
16 5 0.05
17 14 0.14
18 33 0.32
19 21 0.20
20 21 0.20
21 6 0.06
22 3 0.03
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (18 bp):
AATTTTATAATTTTTTAT
Found at i:32344847 original size:11 final size:10
Alignment explanation
Indices: 32344811--32344891 Score: 71
Period size: 10 Copynumber: 8.3 Consensus size: 10
32344801 ATTTATAAAA
32344811 TTTTATAATT
1 TTTTATAATT
32344821 ATTTTAT-A-T
1 -TTTTATAATT
*
32344830 TTCTATATATT
1 TTTTATA-ATT
*
32344841 TTTTATAAAT
1 TTTTATAATT
*
32344851 TTTTACAATT
1 TTTTATAATT
*
32344861 TTTTATGA-T
1 TTTTATAATT
32344870 TTTTAT-ATT
1 TTTTATAATT
*
32344879 TTTTCTAATT
1 TTTTATAATT
32344889 TTT
1 TTT
32344892 AATATTTTGA
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
8 6 0.11
9 14 0.25
10 24 0.42
11 13 0.23
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (10 bp):
TTTTATAATT
Found at i:32344848 original size:40 final size:40
Alignment explanation
Indices: 32344802--32344910 Score: 115
Period size: 40 Copynumber: 2.9 Consensus size: 40
32344792 TTCTTATGAA
32344802 TTTATAAAATTTTATAATTATTTTATATTTCTATATATTT
1 TTTATAAAATTTTATAATTATTTTATATTTCTATATATTT
* *
32344842 TTTATAAATTTTTACAATT-TTTTATGATTT-T-TATATTT
1 TTTATAAAATTTTATAATTATTTTAT-ATTTCTATATATTT
* *
32344880 TTTCT--AATTTT-TAA-TATTTTGATTTTTCTAT
1 TTTATAAAATTTTATAATTATTTT-ATATTTCTAT
32344911 TAAAATTTAA
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
34 1 0.02
35 9 0.16
36 8 0.14
37 1 0.02
38 11 0.19
39 7 0.12
40 21 0.36
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (40 bp):
TTTATAAAATTTTATAATTATTTTATATTTCTATATATTT
Found at i:32345403 original size:26 final size:29
Alignment explanation
Indices: 32345349--32345405 Score: 84
Period size: 26 Copynumber: 2.1 Consensus size: 29
32345339 CTGATCAATG
*
32345349 AAATAGTAAGATGTCAAAAATAAAGAAAT
1 AAATAGTAAGATGTCAAAAATAAAAAAAT
32345378 AAATA-TAAGAT-T-AAAAATAAAAAAAT
1 AAATAGTAAGATGTCAAAAATAAAAAAAT
32345404 AA
1 AA
32345406 TTTATAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 15 0.56
27 1 0.04
28 6 0.22
29 5 0.19
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.21
Consensus pattern (29 bp):
AAATAGTAAGATGTCAAAAATAAAAAAAT
Found at i:32345425 original size:16 final size:15
Alignment explanation
Indices: 32345394--32345423 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32345384 AAGATTAAAA
32345394 ATAAAAAAATAATTT
1 ATAAAAAAATAATTT
32345409 ATAAAAAAATAATTT
1 ATAAAAAAATAATTT
32345424 TAACCCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAAAAAATAATTT
Found at i:32347300 original size:21 final size:22
Alignment explanation
Indices: 32347271--32347312 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
32347261 ACACCAAAAC
*
32347271 AGGCTTTTAGCGGC-GTTTTTT
1 AGGCCTTTAGCGGCAGTTTTTT
32347292 AGGCCTTTAGCGGCAGTTTTT
1 AGGCCTTTAGCGGCAGTTTTT
32347313 AACACCGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.12, C:0.17, G:0.29, T:0.43
Consensus pattern (22 bp):
AGGCCTTTAGCGGCAGTTTTTT
Found at i:32347622 original size:41 final size:43
Alignment explanation
Indices: 32347388--32347618 Score: 184
Period size: 43 Copynumber: 5.4 Consensus size: 43
32347378 TAGAAATAAG
* * * *
32347388 CGCCGCTAAA-AGTCATAACCTTTAGCGGCGCTTCTCCCACAAA
1 CGCCGCTAAAGA-ACATGACCTTTAGCGGCGCTTATACCACAAA
* * * * * * *
32347431 CGCCTCTATAGATCATGATCTTTAGCGGTG-TTTTTCTCACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTATAC-CACAAA
* * *
32347474 CGCCGCTAAAGAACAAGACCTTTAGCGGTGCTTCTACCACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTATACCACAAA
* * *
32347517 CGCCGCTAAATAACATGACCTTTAGTGACGCTTATACCACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTATACCACAAA
* * * * ***
32347560 CGCCACTATA-AAGATGACTTTTAGCGGCGCTT-TTTGACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTATACCACAAA
*
32347601 CGCCGCTAAA-AAGATGAC
1 CGCCGCTAAAGAACATGAC
32347619 TTTTTAAAAA
Statistics
Matches: 154, Mismatches: 31, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
41 22 0.14
42 22 0.14
43 105 0.68
44 5 0.03
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTATACCACAAA
Found at i:32350433 original size:2 final size:2
Alignment explanation
Indices: 32350426--32350455 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
32350416 CCAACAAAAC
32350426 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32350456 GAAATACCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32352100 original size:22 final size:22
Alignment explanation
Indices: 32352046--32352111 Score: 73
Period size: 21 Copynumber: 3.0 Consensus size: 22
32352036 GTATGTTTGT
* *
32352046 AAAGTTGGGGGTTTCAAGGGGGG
1 AAAGTTGGGGATTT-TAGGGGGG
*
32352069 AAA-TTAGGGATTTTAGGGGGG
1 AAAGTTGGGGATTTTAGGGGGG
*
32352090 AAAGTTGGGGA-TTTCGGGGGG
1 AAAGTTGGGGATTTTAGGGGGG
32352111 A
1 A
32352112 GGGGATTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 20 0.54
22 14 0.38
23 3 0.08
ACGTcount: A:0.24, C:0.03, G:0.48, T:0.24
Consensus pattern (22 bp):
AAAGTTGGGGATTTTAGGGGGG
Found at i:32352318 original size:147 final size:148
Alignment explanation
Indices: 32352120--32352415 Score: 445
Period size: 147 Copynumber: 2.0 Consensus size: 148
32352110 GAGGGGATTT
* *
32352120 TATAAAATGGCGCTATTTTTTTAAAATAAAATTATTTTTGTGGCGTTTTTTTATAAAAATGCCGC
1 TATAAAATGGCGCTATTTTTTTAAAATAAAATTATTTTTGTGACGTTTTTTTATAAAAACGCCGC
*
32352185 TATTGCTTATATATTG-GGAGTTTTTTTATAAAAACGCCGC-AAAAAATTATTTCATTTGGAATA
66 TATTGCTTATATATTGTGGAG-TTTTTCATAAAAACGCCGCAAAAAAATTATTTCATTTGGAATA
* *
32352248 AAACGACATTGTTTTGCTA
130 AAAAGACACTGTTTTGCTA
* *
32352267 TATAAAATGGCGCTATTTTTTTAAAGTAAATTTATTTTTTGTGACG-TTTTTTATAAAAACGCCG
1 TATAAAATGGCGCTATTTTTTTAAAATAAAATTA-TTTTTGTGACGTTTTTTTATAAAAACGCCG
* * * * *
32352331 CTATTGTTTATCTTTTGTGGCGTTTTTCATAAAAACGTCGCAAAAAAATTATTTCATTTGGAATA
65 CTATTGCTTATATATTGTGGAGTTTTTCATAAAAACGCCGCAAAAAAATTATTTCATTTGGAATA
32352396 AAAAGACACTGTTTTGCTA
130 AAAAGACACTGTTTTGCTA
32352415 T
1 T
32352416 GCTAAAAATC
Statistics
Matches: 134, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
147 80 0.60
148 54 0.40
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (148 bp):
TATAAAATGGCGCTATTTTTTTAAAATAAAATTATTTTTGTGACGTTTTTTTATAAAAACGCCGC
TATTGCTTATATATTGTGGAGTTTTTCATAAAAACGCCGCAAAAAAATTATTTCATTTGGAATAA
AAAGACACTGTTTTGCTA
Found at i:32353396 original size:125 final size:125
Alignment explanation
Indices: 32353167--32353402 Score: 352
Period size: 125 Copynumber: 1.9 Consensus size: 125
32353157 TATATAAGAA
* *
32353167 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTCGACCCTGA
1 CTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCTTAAACCCTAACTCAACCCTGA
32353232 ATCTCTAAACCCTAAATCACTAACTCTTAACCCCAAACCCCTAACCACTAACCCCTAAAC
66 ATCTCTAAACCCTAAATCACTAACTCTTAACCCCAAACCCCTAACCACTAACCCCTAAAC
*
32353292 CTTATTTAATATATAAATTAAAACACACTAATTAATCTAAACCTTAAACCCTAAC-CTAACACC-
1 CTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCTTAAACCCTAACTC-AAC-CCT
** ***
32353355 GAATC-CATAAACCCTAAATCTTTAACTCTTAACCTTTAACCCCTAACC
64 GAATCTC-TAAACCCTAAATCACTAACTCTTAACCCCAAACCCCTAACC
32353403 CATAAACCTT
Statistics
Matches: 100, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
124 2 0.02
125 96 0.96
126 2 0.02
ACGTcount: A:0.42, C:0.29, G:0.01, T:0.28
Consensus pattern (125 bp):
CTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCTTAAACCCTAACTCAACCCTGA
ATCTCTAAACCCTAAATCACTAACTCTTAACCCCAAACCCCTAACCACTAACCCCTAAAC
Found at i:32353451 original size:14 final size:15
Alignment explanation
Indices: 32353434--32353466 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32353424 CTTAAATCAG
32353434 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
*
32353448 AATCCTTAATTCCAT
1 AATCCCTAATTCCAT
32353463 AATC
1 AATC
32353467 TATAAACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.36, C:0.30, G:0.00, T:0.33
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:32354016 original size:41 final size:42
Alignment explanation
Indices: 32353857--32354044 Score: 179
Period size: 41 Copynumber: 4.5 Consensus size: 42
32353847 TTTTGTGGCA
* * *
32353857 CTTTTTCAAAAACGCCGCTAAAG-CCTCGAGCATTCGCGACG
1 CTTTTTCAAAAACGCCGCTAAAGACCTCAAGCATTAGCGGCG
* * * * *
32353898 CTTCTTGAAAAAC-CCGCTAAAG-CCCCGAGCATTAGCAGCG
1 CTTTTTCAAAAACGCCGCTAAAGACCTCAAGCATTAGCGGCG
** * * *
32353938 CCATTTCAAAAACGCCACTAAAGATCTGAA-CATTAGCGGCG
1 CTTTTTCAAAAACGCCGCTAAAGACCTCAAGCATTAGCGGCG
* *
32353979 CTTTTTCAAAAACGCCGCTAAAGATCT-AAGCATTAGCGGTG
1 CTTTTTCAAAAACGCCGCTAAAGACCTCAAGCATTAGCGGCG
*
32354020 CTTTTTTTTAAAAACGCCGCTAAAG
1 C--TTTTTCAAAAACGCCGCTAAAG
32354045 CCCTGAAAGG
Statistics
Matches: 121, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
40 34 0.28
41 64 0.53
42 2 0.02
43 21 0.17
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (42 bp):
CTTTTTCAAAAACGCCGCTAAAGACCTCAAGCATTAGCGGCG
Found at i:32354496 original size:10 final size:10
Alignment explanation
Indices: 32354481--32354505 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32354471 AAATCTGTCG
32354481 AAAATAAATC
1 AAAATAAATC
32354491 AAAATAAATC
1 AAAATAAATC
32354501 AAAAT
1 AAAAT
32354506 TTATTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAATAAATC
Found at i:32366450 original size:19 final size:19
Alignment explanation
Indices: 32366426--32366470 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
32366416 AATGGAATAA
32366426 AAGACTTGATAAAATGATC
1 AAGACTTGATAAAATGATC
32366445 AAGACTTGATAAAATGATC
1 AAGACTTGATAAAATGATC
32366464 AAGACTT
1 AAGACTT
32366471 TTGGATTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.27
Consensus pattern (19 bp):
AAGACTTGATAAAATGATC
Found at i:32371745 original size:16 final size:16
Alignment explanation
Indices: 32371722--32371770 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
32371712 TTCGCTGTAT
32371722 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
32371738 TTGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
* *
32371754 TGGGATAGAGACGTAA
1 TGGAATAGAGGCGTAA
32371770 T
1 T
32371771 AGCAAATCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.37, C:0.06, G:0.35, T:0.22
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:32372024 original size:18 final size:17
Alignment explanation
Indices: 32372003--32372037 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32371993 TTATTATTAA
*
32372003 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
32372021 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32372038 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Done.