genome.fa.s7.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  108  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32949793--32949848	25	2.3	25	84	9	71	23	16	26	33	1.95
32949829--32949877	25	2.0	25	83	0	62	26	16	22	34	1.95
32952507--32952531	4	6.2	4	100	0	50	24	0	0	76	0.80
32953316--32953353	6	6.5	6	87	6	60	81	2	0	15	0.80
32953316--32953353	18	2.2	17	95	4	67	81	2	0	15	0.80
32963987--32964101	43	2.7	41	75	17	126	25	18	26	30	1.98
32965910--32966202	50	5.8	50	90	0	433	20	30	21	26	1.98
32967692--32967914	23	9.6	23	85	3	277	28	11	18	41	1.85
32967692--32967914	47	4.8	46	84	3	277	28	11	18	41	1.85
32967692--32967917	70	3.2	69	86	3	319	28	11	18	42	1.84
32967972--32968078	40	2.7	39	79	12	112	38	23	21	16	1.93
32968138--32968337	41	4.9	41	87	1	285	26	22	23	29	1.99
32968759--32968973	43	5.0	43	88	3	310	29	31	17	21	1.96
32970062--32970090	14	2.1	14	100	0	58	51	0	13	34	1.42
32971691--32971763	19	3.9	17	79	15	65	47	0	5	46	1.25
32972806--32972867	21	2.9	21	76	23	67	38	33	0	27	1.57
32972804--32972867	14	4.5	14	84	5	76	39	34	0	26	1.57
32972976--32973070	7	13.3	7	68	12	50	35	42	2	20	1.64
32972971--32973036	29	2.3	29	84	5	80	39	34	1	24	1.65
32973019--32973071	21	2.4	23	79	17	60	30	49	1	18	1.59
32973671--32973905	41	5.7	42	82	4	223	28	24	25	20	1.99
32973684--32973905	82	2.7	82	87	0	291	29	24	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32973683--32973905	123	1.8	124	87	2	333	30	24	25	20	1.99
32975192--32975725	111	4.7	114	89	6	798	44	13	12	29	1.81
32977768--32977808	20	2.0	20	100	0	82	34	4	19	41	1.73
32979196--32979257	32	1.9	32	96	0	115	11	17	35	35	1.86
32979152--32979296	75	1.9	75	91	0	236	16	19	33	31	1.94
32979390--32979432	22	2.0	22	90	0	68	44	23	20	11	1.84
32984078--32984117	20	2.0	20	90	0	62	72	2	0	25	0.97
32996880--32996913	12	2.6	13	86	13	52	20	5	23	50	1.70
32997789--32998105	129	2.4	129	87	5	465	32	14	5	46	1.69
32998221--32998251	15	2.1	15	100	0	62	35	19	19	25	1.95
32998320--32998435	60	1.9	59	87	5	171	48	12	16	22	1.80
33001248--33001272	11	2.3	11	100	0	50	44	24	8	24	1.80
33008864--33009133	142	1.9	137	89	4	389	29	15	14	40	1.87
33013103--33013217	40	2.9	39	83	7	133	38	20	20	20	1.94
33013274--33013452	42	4.3	42	83	2	200	21	18	29	30	1.97
33013254--33013452	83	2.4	83	82	5	224	21	18	27	32	1.96
33014356--33014396	21	2.0	20	85	4	55	19	0	41	39	1.52
33014388--33014425	7	5.4	7	87	0	58	18	2	47	31	1.62
33014936--33015155	82	2.7	83	78	6	225	30	16	18	35	1.93
33016166--33016235	35	1.9	37	88	5	108	24	7	14	54	1.65
33016287--33016755	157	3.0	157	98	0	893	33	15	17	33	1.92
33016963--33016993	12	2.6	12	94	0	53	6	9	16	67	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33018061--33018093	10	3.1	11	86	8	50	33	9	21	36	1.85
33018127--33018182	27	2.0	28	89	3	87	44	8	1	44	1.45
33018166--33018343	21	8.4	22	77	14	144	43	12	0	43	1.42
33018214--33018273	13	5.4	13	64	35	50	46	10	0	43	1.37
33018265--33018378	23	5.3	23	69	23	86	44	8	0	46	1.34
33018122--33018353	104	2.2	105	85	13	350	44	11	0	43	1.43
33018369--33018457	43	2.1	43	97	0	169	35	6	8	48	1.61
33018662--33018966	9	36.8	9	68	19	173	46	20	1	31	1.60
33018681--33018872	25	7.8	25	73	13	123	47	19	1	31	1.57
33018714--33018926	57	3.8	55	81	10	270	46	19	1	32	1.61
33018671--33018966	113	2.6	113	88	9	436	46	19	1	31	1.59
33018809--33018961	31	5.0	31	71	18	133	48	18	1	31	1.57
33022312--33022467	66	2.4	65	83	5	197	40	19	26	13	1.89
33022453--33022565	21	5.4	21	82	2	84	36	16	40	6	1.74
33022868--33023134	43	6.2	42	76	11	195	21	17	30	29	1.97
33022887--33023131	87	2.9	86	82	4	298	23	18	30	28	1.98
33023197--33023239	22	2.0	22	95	0	77	41	27	20	9	1.83
33024506--33024535	15	2.0	15	100	0	60	46	0	6	46	1.29
33025527--33025962	224	1.9	224	99	0	863	27	11	22	39	1.87
33028340--33028426	33	2.7	32	74	15	88	27	9	18	44	1.80
33032061--33032133	30	2.5	31	82	13	91	30	0	17	52	1.46
33032262--33032308	22	2.2	21	85	11	60	65	2	6	25	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33033975--33034318	89	4.0	86	80	7	328	32	12	10	44	1.76
33034157--33034308	81	1.9	79	87	2	223	30	9	10	48	1.70
33046104--33046230	41	3.2	40	79	3	132	34	30	19	14	1.92
33051496--33051544	10	4.9	10	74	0	53	24	4	10	61	1.45
33051496--33051557	30	2.1	30	93	0	106	27	4	9	58	1.50
33057450--33057481	12	2.6	13	85	14	50	37	0	6	56	1.25
33064306--33064455	10	14.9	10	71	21	77	0	29	0	70	0.87
33064318--33064459	4	35.0	4	75	19	118	0	28	0	71	0.87
33064260--33064427	43	3.9	43	76	18	147	0	28	0	71	0.86
33064306--33064470	48	3.4	46	78	11	163	0	30	0	69	0.89
33064267--33064455	44	4.4	43	77	18	148	0	29	0	70	0.88
33064577--33064644	26	2.7	26	90	2	111	50	0	5	44	1.26
33066101--33066216	57	2.0	57	98	0	223	47	5	7	39	1.55
33066394--33066449	20	2.8	19	84	10	67	26	3	1	67	1.16
33070544--33070584	2	20.5	2	100	0	82	48	0	51	0	1.00
33076864--33076969	51	2.1	49	80	13	110	30	13	19	36	1.90
33083212--33083273	27	2.2	28	91	5	108	37	14	14	33	1.87
33091721--33091759	16	2.4	16	86	0	51	15	12	2	69	1.30
33091976--33092009	9	3.8	9	96	0	50	35	11	26	26	1.91
33092062--33092098	9	4.1	9	85	0	56	48	13	8	29	1.71
33092104--33092162	29	2.0	29	90	0	91	37	11	1	49	1.50
33093759--33093796	19	2.0	20	94	5	69	15	13	10	60	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33096698--33096745	5	9.4	5	80	13	53	20	22	14	41	1.89
33096964--33097152	50	3.7	50	80	4	189	23	29	21	25	1.99
33098951--33098999	20	2.5	19	80	9	53	42	18	26	12	1.85
33100027--33100065	20	1.9	21	84	5	53	53	5	0	41	1.23
33111777--33111992	29	7.4	29	76	5	148	36	13	25	23	1.92
33111832--33112051	29	7.5	29	74	6	115	37	14	25	22	1.92
33111807--33112051	116	2.1	118	85	3	325	37	14	26	22	1.92
33111834--33112054	58	3.8	58	70	7	169	36	14	26	22	1.92
33113506--33113573	33	2.1	33	97	0	127	29	5	22	42	1.77
33115742--33115925	32	5.8	32	84	8	227	39	20	18	22	1.93
33115742--33115925	61	2.9	61	84	8	219	39	20	18	22	1.93
33115742--33115931	93	2.0	93	90	4	303	39	19	18	22	1.92
33115966--33116017	27	1.9	27	85	14	72	32	13	26	26	1.94
33116100--33116209	24	4.6	24	82	0	121	42	20	8	28	1.81
33116227--33116424	27	7.4	27	88	1	285	23	23	19	33	1.97
33116416--33116556	27	5.2	27	78	10	144	21	14	19	43	1.87
33116227--33116540	54	5.9	54	81	7	232	22	20	20	36	1.95
33122700--33122766	23	3.0	23	84	2	91	49	16	14	19	1.80
33128422--33128446	9	2.8	9	100	0	50	88	0	0	12	0.53
33132479--33132583	40	2.6	40	82	8	124	28	27	20	22	1.99
33133295--33133329	16	2.2	16	90	10	54	28	17	2	51	1.59
33136383--33136423	22	1.9	22	90	5	66	14	12	9	63	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33137134--33137212	26	3.0	26	71	15	72	48	2	0	49	1.14
33137140--33137215	24	2.9	25	74	20	66	50	2	0	47	1.15
33137135--33137192	15	4.2	15	75	18	63	51	0	0	48	1.00
33137153--33137217	12	5.2	12	70	18	53	50	3	0	46	1.17
33141928--33141961	17	2.0	17	88	0	50	52	20	5	20	1.67
33144897--33144937	14	2.9	14	89	10	57	0	21	2	75	0.92
33145956--33145997	20	2.2	20	87	12	61	64	2	16	16	1.40
33146443--33146472	16	1.9	16	93	6	53	30	0	20	50	1.49
33147432--33147470	20	1.9	21	89	5	62	33	12	2	51	1.54
33148730--33148811	38	2.2	37	95	4	146	19	17	10	52	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204