Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60982465
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 868082 characters in sequence are not A, C, G, or T
File 120 of 204
Found at i:36675077 original size:22 final size:23
Alignment explanation
Indices: 36675052--36675103 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
36675042 GATTACCCAA
36675052 TTAAATT-AATTCTATAATTAAT
1 TTAAATTCAATTCTATAATTAAT
* *
36675074 TT-AATTCATTTGTATAATTAAT
1 TTAAATTCAATTCTATAATTAAT
36675096 TT-AATTCA
1 TTAAATTCA
36675104 TGTGGCAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAAATTCAATTCTATAATTAAT
Found at i:36686015 original size:50 final size:51
Alignment explanation
Indices: 36685947--36686088 Score: 198
Period size: 50 Copynumber: 2.8 Consensus size: 51
36685937 AAAGTGAAGG
*
36685947 TGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTA-C-CTGAA
1 TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGCTGAA
* * * * *
36685996 TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGTTAG
1 TGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGCTGAA
*
36686048 TGATGGTCACATGTGTAGTACTATGTGTAGGCTACTATGTG
1 TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
36686089 AAATGGTATC
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
49 4 0.05
50 36 0.44
51 35 0.43
52 6 0.07
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.34
Consensus pattern (51 bp):
TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGCTGAA
Found at i:36689441 original size:38 final size:38
Alignment explanation
Indices: 36689387--36689538 Score: 232
Period size: 38 Copynumber: 4.0 Consensus size: 38
36689377 TATATAATTA
* *
36689387 TACCCCTGATCGCACTTATGTGCCCTGTTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCTATTGTACTTCGG
*
36689425 TACCCCTGATCACACTTACGTGCCCTATTGTACTTCGG
1 TACCCCTGATCGCACTTACGTGCCCTATTGTACTTCGG
* * *
36689463 TACCCTTGATCGCACTTACGTGCCCTATTATACTTTGG
1 TACCCCTGATCGCACTTACGTGCCCTATTGTACTTCGG
*
36689501 TACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCG
1 TACCCCTGATCGCACTTACGTG-CCCTATTGTACTTCG
36689539 ATACTCTCGA
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 90 0.88
39 12 0.12
ACGTcount: A:0.16, C:0.33, G:0.18, T:0.34
Consensus pattern (38 bp):
TACCCCTGATCGCACTTACGTGCCCTATTGTACTTCGG
Found at i:36689488 original size:20 final size:19
Alignment explanation
Indices: 36689390--36689525 Score: 66
Period size: 18 Copynumber: 7.2 Consensus size: 19
36689380 ATAATTATAC
*
36689390 CCCTGATCGCACTTATGTG
1 CCCTGATCGCACTTACGTG
* * *
36689409 CCCTG-TTGTACTT-CGGTAC
1 CCCTGATCGCACTTAC-GT-G
*
36689428 CCCTGATCACACTTACGTG
1 CCCTGATCGCACTTACGTG
* * *
36689447 CCCT-ATTGTACTT-CGGTA
1 CCCTGATCGCACTTAC-GTG
36689465 CCCTTGATCGCACTTACGTG
1 CCC-TGATCGCACTTACGTG
*** ** *
36689485 CCCT-ATTATACTTTGGTAC
1 CCCTGATCGCACTTACGT-G
36689504 CCCTGATCGCACTTACGTG
1 CCCTGATCGCACTTACGTG
36689523 CCC
1 CCC
36689526 CTGTTGTACT
Statistics
Matches: 80, Mismatches: 27, Indels: 20
0.63 0.21 0.16
Matches are distributed among these distances:
17 1 0.01
18 27 0.34
19 23 0.29
20 27 0.34
21 2 0.03
ACGTcount: A:0.16, C:0.34, G:0.18, T:0.32
Consensus pattern (19 bp):
CCCTGATCGCACTTACGTG
Found at i:36689517 original size:76 final size:77
Alignment explanation
Indices: 36689386--36689556 Score: 236
Period size: 76 Copynumber: 2.2 Consensus size: 77
36689376 TTATATAATT
* * * *
36689386 ATACCCCTGATCGCACTTATGTGCCCTGTTGTACTTCGGTACCCCTGATCACACTTACGTG-CCC
1 ATACCCTTGATCGCACTTACGTGCCCTATTATACTTCGGTACCCCTGATCACACTTACGTGCCCC
36689450 TATTGTACTTCG
66 TATTGTACTTCG
* * *
36689462 GTACCCTTGATCGCACTTACGTGCCCTATTATACTTTGGTACCCCTGATCGCACTTACGTGCCCC
1 ATACCCTTGATCGCACTTACGTGCCCTATTATACTTCGGTACCCCTGATCACACTTACGTGCCCC
*
36689527 TGTTGTACTTCG
66 TATTGTACTTCG
* * *
36689539 ATACTCTCGATAGCACTT
1 ATACCCTTGATCGCACTT
36689557 TTGTGTCGTG
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
76 54 0.66
77 28 0.34
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.33
Consensus pattern (77 bp):
ATACCCTTGATCGCACTTACGTGCCCTATTATACTTCGGTACCCCTGATCACACTTACGTGCCCC
TATTGTACTTCG
Found at i:36689526 original size:20 final size:20
Alignment explanation
Indices: 36689389--36689528 Score: 71
Period size: 20 Copynumber: 7.3 Consensus size: 20
36689379 TATAATTATA
*
36689389 CCCCTGATCGCACTTATGTG
1 CCCCTGATCGCACTTACGTG
* * *
36689409 -CCCTG-TTGTACTT-CGGTA
1 CCCCTGATCGCACTTAC-GTG
*
36689427 CCCCTGATCACACTTACGTG
1 CCCCTGATCGCACTTACGTG
* * *
36689447 -CCCT-ATTGTACTT-CGGTA
1 CCCCTGATCGCACTTAC-GTG
*
36689465 CCCTTGATCGCACTTACGTG
1 CCCCTGATCGCACTTACGTG
*** ** *
36689485 -CCCT-ATTATACTTTGGTA
1 CCCCTGATCGCACTTACGTG
36689503 CCCCTGATCGCACTTACGTG
1 CCCCTGATCGCACTTACGTG
36689523 CCCCTG
1 CCCCTG
36689529 TTGTACTTCG
Statistics
Matches: 81, Mismatches: 29, Indels: 20
0.62 0.22 0.15
Matches are distributed among these distances:
17 1 0.01
18 24 0.30
19 24 0.30
20 30 0.37
21 2 0.02
ACGTcount: A:0.16, C:0.34, G:0.18, T:0.32
Consensus pattern (20 bp):
CCCCTGATCGCACTTACGTG
Found at i:36692015 original size:49 final size:49
Alignment explanation
Indices: 36691957--36692050 Score: 179
Period size: 49 Copynumber: 1.9 Consensus size: 49
36691947 ACAGAAAAAG
*
36691957 AAAATACATGTTGAATTTACTGAATATACTATTAAGGTTACAAATCTTA
1 AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAATCTTA
36692006 AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAAT
1 AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAAT
36692051 TTTATAGGTC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.36
Consensus pattern (49 bp):
AAAATACATGTTGAATTTACTAAATATACTATTAAGGTTACAAATCTTA
Found at i:36696076 original size:39 final size:38
Alignment explanation
Indices: 36695993--36696103 Score: 134
Period size: 39 Copynumber: 2.9 Consensus size: 38
36695983 ATAATTATAC
* * *
36695993 CCCTGATTGCACCTACGTG-CCCTATTGTACTTCGGTA
1 CCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTA
36696030 CCTCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTA
1 CC-CTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTA
* * *
36696069 TCCCTGATCACACTTACGTACCCCTGATCGTACTT
1 -CCCTGATCGCACTTACGTGCCCCTG-TTGTACTT
36696104 ATGTGTCCCT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
37 2 0.03
38 15 0.23
39 38 0.59
40 9 0.14
ACGTcount: A:0.16, C:0.34, G:0.17, T:0.32
Consensus pattern (38 bp):
CCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTA
Found at i:36696103 original size:20 final size:20
Alignment explanation
Indices: 36696027--36696144 Score: 73
Period size: 20 Copynumber: 6.0 Consensus size: 20
36696017 TTGTACTTCG
*
36696027 GTACCTCTGATCGCACTTAC
1 GTACCCCTGATCGCACTTAC
* * *
36696047 GTGCCCCTG-TTGTACTT-C
1 GTACCCCTGATCGCACTTAC
* *
36696065 GGTATCCCTGATCACACTTAC
1 -GTACCCCTGATCGCACTTAC
* *
36696086 GTACCCCTGATCGTACTTAT
1 GTACCCCTGATCGCACTTAC
** * *
36696106 GTGTCCCTG-TTGTACTT-C
1 GTACCCCTGATCGCACTTAC
*
36696124 GGTCCCCCTGATCGCACTTAC
1 -GTACCCCTGATCGCACTTAC
36696145 ATGCCCTGTT
Statistics
Matches: 71, Mismatches: 21, Indels: 11
0.69 0.20 0.11
Matches are distributed among these distances:
18 1 0.01
19 27 0.38
20 41 0.58
21 2 0.03
ACGTcount: A:0.15, C:0.34, G:0.18, T:0.33
Consensus pattern (20 bp):
GTACCCCTGATCGCACTTAC
Found at i:36696104 original size:59 final size:59
Alignment explanation
Indices: 36696027--36696144 Score: 173
Period size: 59 Copynumber: 2.0 Consensus size: 59
36696017 TTGTACTTCG
* *
36696027 GTACCTCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTATCCCTGATCACACTTAC
1 GTACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTACCCCTGATCACACTTAC
* * * * *
36696086 GTACCCCTGATCGTACTTATGTGTCCCTGTTGTACTTCGGTCCCCCTGATCGCACTTAC
1 GTACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTACCCCTGATCACACTTAC
36696145 ATGCCCTGTT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.15, C:0.34, G:0.18, T:0.33
Consensus pattern (59 bp):
GTACCCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTACCCCTGATCACACTTAC
Found at i:36696163 original size:38 final size:38
Alignment explanation
Indices: 36696086--36696281 Score: 230
Period size: 38 Copynumber: 5.1 Consensus size: 38
36696076 TCACACTTAC
* **
36696086 GTACCCCTGATCGTACTTATGTGTCCCTGTTGTACTTCG
1 GTACCCCTGATCGCACTTACATG-CCCTGTTGTACTTCG
* *
36696125 GTCCCCCTGATCGCACTTACATGCCCTGTTGTAATTCG
1 GTACCCCTGATCGCACTTACATGCCCTGTTGTACTTCG
* * * *
36696163 GTACCGCTGATCGCATTTACGTGCCCTGTTGTACTTTG
1 GTACCCCTGATCGCACTTACATGCCCTGTTGTACTTCG
* * *
36696201 GTACCCTTGATTGCACTTACATGCACCTATTGTACTTCG
1 GTACCCCTGATCGCACTTACATGC-CCTGTTGTACTTCG
* * **
36696240 GTACCCCTGACCGAACTTTTATGCCCTGTTGTACTTCG
1 GTACCCCTGATCGCACTTACATGCCCTGTTGTACTTCG
36696278 GTAC
1 GTAC
36696282 TCCCAATAGC
Statistics
Matches: 131, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
38 82 0.63
39 49 0.37
ACGTcount: A:0.16, C:0.30, G:0.19, T:0.35
Consensus pattern (38 bp):
GTACCCCTGATCGCACTTACATGCCCTGTTGTACTTCG
Found at i:36696174 original size:77 final size:77
Alignment explanation
Indices: 36696086--36696281 Score: 250
Period size: 77 Copynumber: 2.5 Consensus size: 77
36696076 TCACACTTAC
* *
36696086 GTACCCCTGATCGTACTTATGTGTCCCTGTTGTACTTCGGTCCCCCTGATCGCACTTACATGC-C
1 GTACCCCTGATCGAACTTATGTG-CCCTGTTGTACTTCGGTACCCCTGATCGCACTTACATGCAC
*
36696150 CTGTTGTAATTCG
65 CTATTGTAATTCG
* * * * * * *
36696163 GTACCGCTGATCGCATTTACGTGCCCTGTTGTACTTTGGTACCCTTGATTGCACTTACATGCACC
1 GTACCCCTGATCGAACTTATGTGCCCTGTTGTACTTCGGTACCCCTGATCGCACTTACATGCACC
*
36696228 TATTGTACTTCG
66 TATTGTAATTCG
* * *
36696240 GTACCCCTGACCGAACTTTTATGCCCTGTTGTACTTCGGTAC
1 GTACCCCTGATCGAACTTATGTGCCCTGTTGTACTTCGGTAC
36696282 TCCCAATAGC
Statistics
Matches: 100, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
76 35 0.35
77 65 0.65
ACGTcount: A:0.16, C:0.30, G:0.19, T:0.35
Consensus pattern (77 bp):
GTACCCCTGATCGAACTTATGTGCCCTGTTGTACTTCGGTACCCCTGATCGCACTTACATGCACC
TATTGTAATTCG
Found at i:36704793 original size:45 final size:45
Alignment explanation
Indices: 36704682--36704865 Score: 212
Period size: 45 Copynumber: 4.1 Consensus size: 45
36704672 AATAATAACA
* * *
36704682 GATACACGGTGG-ATCAGCACATAGC-ACCACCCTTATAGTCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
* * * * *
36704725 GATACTCGGTTGAATCAGTACATAGCAACCAGCTTCATAATCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
*
36704770 -AGTACCCGGTGGAATTAGCACATAGCAACCACCTTTATAATCAAT
1 GA-TACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
* * * *
36704815 GATATCTGGTGGAATCAGCATACAGCAACCACCTTTATAATCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
*
36704860 GGTACC
1 GATACC
36704866 TGGTACACGT
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
43 10 0.09
44 13 0.11
45 93 0.79
46 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (45 bp):
GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
Found at i:36712781 original size:43 final size:43
Alignment explanation
Indices: 36712618--36712782 Score: 172
Period size: 43 Copynumber: 3.8 Consensus size: 43
36712608 ACGTCACTAA
* * * *
36712618 CTTTAGCGGCGTTTTTTTCTAAAAACGCCACTAAAGACTAAGAC
1 CTTTAGCGGCGCTTTTCTC-ACAAACGCCACTAAAGACCAAGAC
* * *
36712662 CTTTAGCGGCGCTTTTCCCACAAACGCCGA-TAAAGAGCACGAC
1 CTTTAGCGGCGCTTTTCTCACAAACGCC-ACTAAAGACCAAGAC
* * * * *
36712705 CTTTAGCGGCACATTTT-ACACAAATGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGC-TTTTCTCACAAACGCCACTAAAGACCAAGAC
*
36712748 CTTTAGCGGGGCTTTTCTCACAAACGCCACTAAAG
1 CTTTAGCGGCGCTTTTCTCACAAACGCCACTAAAG
36712783 GTCATGAAAA
Statistics
Matches: 99, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
42 4 0.04
43 74 0.75
44 21 0.21
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCTCACAAACGCCACTAAAGACCAAGAC
Found at i:36713707 original size:23 final size:23
Alignment explanation
Indices: 36713681--36714001 Score: 241
Period size: 23 Copynumber: 14.0 Consensus size: 23
36713671 AATGGAATGT
*
36713681 AGCACTTTAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
*
36713704 AGCATTTAAACACTTCAATTTGA-
1 AGCACTTAAACACTTCAATTT-AC
* *
36713727 AGCACTTTAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * *
36713750 AACATTTATACACATCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
36713772 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
36713795 AACAAC-TAAACACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
*
36713818 AGCACTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
36713841 AGCACTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
36713864 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * *
36713887 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
36713909 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
36713932 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
*
36713955 AGCACTTAAACACTTCAATTTAT
1 AGCACTTAAACACTTCAATTTAC
** *
36713978 AATATTTAAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
36714001 A
1 A
36714002 AACCCACCAT
Statistics
Matches: 236, Mismatches: 44, Indels: 36
0.75 0.14 0.11
Matches are distributed among these distances:
22 35 0.15
23 198 0.84
24 3 0.01
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.31
Consensus pattern (23 bp):
AGCACTTAAACACTTCAATTTAC
Found at i:36713920 original size:114 final size:114
Alignment explanation
Indices: 36713689--36714002 Score: 316
Period size: 114 Copynumber: 2.7 Consensus size: 114
36713679 GTAGCACTTT
* * * *
36713689 AACACTTCAATTTACAGCATTTAAACACTTCAATTTGAAGCACTTTAACA-TATCAATTAACAAC
1 AACACTTCAATTTACAGCACTTAAACACTTCAATTTGCAGCACTTAAACACT-TCAATTTACAAC
* * * * *
36713753 ATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAACAACTA
65 ACTTAAACACATCAATTACAACGATAAAACACCTCAATTTACAACAACTA
* * *
36713803 AACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCA
1 AACACTTCAATTTACAGCACTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACA
* * * * *
36713868 CTTAAACATATCAATTAACAAC-ATTTATACACCTCAA-TTACAGCGA-TA
66 CTTAAACACATCAATT-ACAACGA-TAAAACACCTCAATTTACAACAACTA
* * *
36713916 AA-ACATCTCAATTTCCAGCAAC-TAAATACTTCAATTTGCAGCACTTAAACACTTCAATTTATA
1 AACAC-T-TCAATTTACAGC-ACTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACA
* * *
36713979 ATATTTAAACACTTCAATTTACAA
63 ACACTTAAACACATCAA-TTACAA
36714003 ACCCACCATC
Statistics
Matches: 167, Mismatches: 26, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
112 2 0.01
113 5 0.03
114 141 0.84
115 19 0.11
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (114 bp):
AACACTTCAATTTACAGCACTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACA
CTTAAACACATCAATTACAACGATAAAACACCTCAATTTACAACAACTA
Found at i:36713927 original size:137 final size:137
Alignment explanation
Indices: 36713681--36713998 Score: 537
Period size: 137 Copynumber: 2.3 Consensus size: 137
36713671 AATGGAATGT
* *
36713681 AGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGAAGCACTTTAACATATCAAT
1 AGCACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGAAGCACTTAAACATATCAAT
36713746 TAACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAACAACTAAACACTTC
66 TAACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAACAACTAAACACTTC
36713811 AATTTGC
131 AATTTGC
* * *
36713818 AGCACTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAACATATCAAT
1 AGCACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGAAGCACTTAAACATATCAAT
* * *
36713883 TAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTC
66 TAACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAACAACTAAACACTTC
36713948 AATTTGC
131 AATTTGC
* **
36713955 AGCACTTAAACACTTCAATTTATAATATTTAAACACTTCAATTT
1 AGCACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTT
36713999 ACAAACCCAC
Statistics
Matches: 168, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
137 168 1.00
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.31
Consensus pattern (137 bp):
AGCACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGAAGCACTTAAACATATCAAT
TAACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAACAACTAAACACTTC
AATTTGC
Found at i:36713935 original size:91 final size:91
Alignment explanation
Indices: 36713832--36713997 Score: 237
Period size: 91 Copynumber: 1.8 Consensus size: 91
36713822 CTTAAACACT
*
36713832 TCAATTTGCAGC-ACTTAAACACTTCAATTTGCAGCACTTAAACA-TATCAATTAACAACATTTA
1 TCAATTTCCAGCAAC-TAAACACTTCAATTTGCAGCACTTAAACACT-TCAATTAACAACATTTA
*
36713895 TACACCTCAATTACAGCGATAAAACATC
64 AACACCTCAATTACAGCGATAAAACATC
* * * *
36713923 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACACTTCAATTTATAATATTTAAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTAAA
*
36713988 CACTTCAATT
66 CACCTCAATT
36713998 TACAAACCCA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
91 63 0.95
92 3 0.05
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.32
Consensus pattern (91 bp):
TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACAACATTTAAA
CACCTCAATTACAGCGATAAAACATC
Found at i:36718678 original size:41 final size:40
Alignment explanation
Indices: 36718633--36718876 Score: 276
Period size: 41 Copynumber: 6.0 Consensus size: 40
36718623 TCAATTCGGG
*
36718633 ATTAGCGGCGCTTTTTCAAAAGCAACACTAAAGACCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAAC-ACACTAAAGACCCGAGC
* * *
36718674 ATTAGTGGTGCTTTTTCAAAAACGTCACTAAAGACCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAAC-ACACTAAAGACCCGAGC
*
36718715 ATTAGCGGCGCTTTTTCAAAAATGC-CGCTAAAGACCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAA--CACACTAAAGACCCGAGC
* **
36718756 ATTAGCGGTGCTTTTTCAAAAACAC-CGTGAAAGAATCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACACAC-T-AAAGACCCGAGC
* * *
36718797 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGACC
1 ATTAGCGGCGCTTTTTCAAAAAC-ACACTAAAGACCCGAGC
* * *
36718838 AATAGCGGCGCTTTTTCAAAAACGCAGCTAAAGCCCCGA
1 ATTAGCGGCGCTTTTTCAAAAACACA-CTAAAGACCCGA
36718877 AAGGTCAAAA
Statistics
Matches: 175, Mismatches: 20, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
39 2 0.01
40 3 0.02
41 166 0.95
42 2 0.01
43 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (40 bp):
ATTAGCGGCGCTTTTTCAAAAACACACTAAAGACCCGAGC
Found at i:36718770 original size:82 final size:80
Alignment explanation
Indices: 36718633--36718876 Score: 321
Period size: 82 Copynumber: 3.0 Consensus size: 80
36718623 TCAATTCGGG
* *
36718633 ATTAGCGGCGCTTTTTC-AAAAGCAACACTAAAGACCCGAGCATTAGTGGTGCTTTTTCAAAAAC
1 ATTAGCGGCGCTTTTTCAAAAAGC--CGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAAC
36718697 GTCACTAAAGACCCGAGC
64 G-CACTAAAGACCCGAGC
*
36718715 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACA
1 ATTAGCGGCGCTTTTTCAAAAA-GCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
**
36718780 C-CGTGAAAGAATCGAGC
65 CAC-T-AAAGACCCGAGC
* * *
36718797 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCGACCAATAGCGGCGCTTTTTCAAAAACG
1 ATTAGCGGCGCTTTTTCAAAAA-GCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACG
*
36718862 CAGCTAAAGCCCCGA
65 CA-CTAAAGACCCGA
36718877 AAGGTCAAAA
Statistics
Matches: 143, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
80 1 0.01
81 2 0.01
82 132 0.92
83 5 0.03
84 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (80 bp):
ATTAGCGGCGCTTTTTCAAAAAGCCGCTAAAGACCCGAGCATTAGCGGTGCTTTTTCAAAAACGC
ACTAAAGACCCGAGC
Found at i:36718852 original size:123 final size:123
Alignment explanation
Indices: 36718633--36718876 Score: 339
Period size: 123 Copynumber: 2.0 Consensus size: 123
36718623 TCAATTCGGG
* * * *
36718633 ATTAGCGGCGCTTTTTCAAAAGCAACACTAAAGACCCGAGCATTAGTGGTGCTTTTTCAAAAACG
1 ATTAGCGGCGCTTTTTCAAAAACAACACTAAAGAACCGAGCATTAGCGGCGCTTTTTCAAAAACG
* * * * *
36718698 TCACTAAAGACCCGAGCATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGACCCGAGC
66 CCACTAAAGACCCGACCAATAGCGGCGCTTTTTCAAAAACGCAGCTAAAGACCCGAGC
* *
36718756 ATTAGCGGTGCTTTTTCAAAAAC-AC-CGTGAAAGAATCGAGCATTAGCGGCGCTTTTTCAAAAA
1 ATTAGCGGCGCTTTTTCAAAAACAACAC-T-AAAGAACCGAGCATTAGCGGCGCTTTTTCAAAAA
* *
36718819 CGCCGCTAAAGACCCGACCAATAGCGGCGCTTTTTCAAAAACGCAGCTAAAGCCCCGA
64 CGCCACTAAAGACCCGACCAATAGCGGCGCTTTTTCAAAAACGCAGCTAAAGACCCGA
36718877 AAGGTCAAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
121 1 0.01
122 3 0.03
123 102 0.96
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (123 bp):
ATTAGCGGCGCTTTTTCAAAAACAACACTAAAGAACCGAGCATTAGCGGCGCTTTTTCAAAAACG
CCACTAAAGACCCGACCAATAGCGGCGCTTTTTCAAAAACGCAGCTAAAGACCCGAGC
Found at i:36722661 original size:41 final size:41
Alignment explanation
Indices: 36722604--36722908 Score: 302
Period size: 41 Copynumber: 7.5 Consensus size: 41
36722594 TGTAAACGGA
* *
36722604 GGCACGTATGTGCAATTTAAGGGTACC-ACAGTACAAATAGG
1 GGCACGTAAGTGCAATTTAAGGGTACCGA-AGTACAAACAGG
*
36722645 GGCACGCAAGTGCAATTT-AGGAGTACCGAAGTAC-AACA-G
1 GGCACGTAAGTGCAATTTAAGG-GTACCGAAGTACAAACAGG
* * * *
36722684 GGCATGCAAGTGCAATTCAAGGGTACCGAAGTA-AAATAGG
1 GGCACGTAAGTGCAATTTAAGGGTACCGAAGTACAAACAGG
* * * *
36722724 GGCACATAAGTGTAATTTACGGGTACCGTAGTACAAA-AGGG
1 GGCACGTAAGTGCAATTTAAGGGTACCGAAGTACAAACA-GG
* * * * *
36722765 GGCACGTAACTGTAATTCT-AGGGTATCGAATTACAAACAGA
1 GGCACGTAAGTGCAATT-TAAGGGTACCGAAGTACAAACAGG
* * *
36722806 GGCACATAAGTGCAATTTAGGGGTACCGAAGTACAAACATG
1 GGCACGTAAGTGCAATTTAAGGGTACCGAAGTACAAACAGG
* * * *
36722847 GGCACGTAAATGCAATTCAGGGGTACCGAAGTAC-AATAGG
1 GGCACGTAAGTGCAATTTAAGGGTACCGAAGTACAAACAGG
*
36722887 GGCACGTAAGTGCAATTCAAGG
1 GGCACGTAAGTGCAATTTAAGG
36722909 TATAATTAAG
Statistics
Matches: 219, Mismatches: 35, Indels: 21
0.80 0.13 0.08
Matches are distributed among these distances:
39 31 0.14
40 62 0.28
41 123 0.56
42 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (41 bp):
GGCACGTAAGTGCAATTTAAGGGTACCGAAGTACAAACAGG
Found at i:36730003 original size:22 final size:22
Alignment explanation
Indices: 36729940--36730008 Score: 111
Period size: 22 Copynumber: 3.1 Consensus size: 22
36729930 TATTGTTCAA
* *
36729940 ACATGAGAGCTTAGTACGTGAA
1 ACATGAGAGCTTAGTACGTTAG
36729962 ACATGAGAGCTTAGTACGTTAG
1 ACATGAGAGCTTAGTACGTTAG
*
36729984 CCATGAGAGCTTAGTACGTTAG
1 ACATGAGAGCTTAGTACGTTAG
36730006 ACA
1 ACA
36730009 AAAGTTAAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (22 bp):
ACATGAGAGCTTAGTACGTTAG
Found at i:36734774 original size:48 final size:48
Alignment explanation
Indices: 36734716--36734807 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
36734706 TAAAGTTTTA
* * *
36734716 AAAACAAAAACAACAGCAGAAATGGAAACTTACCAACAACACATATCC
1 AAAACAAAAACAACAACAAAAATGGAAACTTACCAACAAAACATATCC
*
36734764 AAAAGAAAAACAACAACAAAAATGGAAACTTACCAACAAAACAT
1 AAAACAAAAACAACAACAAAAATGGAAACTTACCAACAAAACAT
36734808 CTCCGCTCCC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.61, C:0.22, G:0.08, T:0.10
Consensus pattern (48 bp):
AAAACAAAAACAACAACAAAAATGGAAACTTACCAACAAAACATATCC
Found at i:36746199 original size:25 final size:26
Alignment explanation
Indices: 36746150--36746216 Score: 73
Period size: 25 Copynumber: 2.5 Consensus size: 26
36746140 AATCTACCTT
*
36746150 ATCTGGTGGTTTGAACCACGTATATCTG
1 ATCTGGTGGCTTG-ACCACG-ATATCTG
*
36746178 TTCTGGTGGCTTGACCAC-ATATCTG
1 ATCTGGTGGCTTGACCACGATATCTG
* *
36746203 ATCTAGTAGCTTGA
1 ATCTGGTGGCTTGA
36746217 TTGTATTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 18 0.53
27 5 0.15
28 11 0.32
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (26 bp):
ATCTGGTGGCTTGACCACGATATCTG
Found at i:36754937 original size:17 final size:16
Alignment explanation
Indices: 36754906--36754939 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
36754896 AAATATTGTG
36754906 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
36754922 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
36754939 A
1 A
36754940 CACCATCCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:36767251 original size:26 final size:26
Alignment explanation
Indices: 36767212--36767314 Score: 107
Period size: 26 Copynumber: 4.0 Consensus size: 26
36767202 CAACTAATAT
* * *
36767212 CGCAACAAAACTGCCAGTAATAGTAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
*
36767238 CGTAGCAAAGCTGCCAGTAACAGTAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
* * * * *
36767264 TGCAACAGAGCTGCCAGTATCAATAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
* *
36767290 CGCAGTAAAGCTGCCAATAACAGTA
1 CGCAGCAAAGCTGCCAGTAACAGTA
36767315 TTTGTGGCAA
Statistics
Matches: 60, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 60 1.00
ACGTcount: A:0.41, C:0.23, G:0.19, T:0.17
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAACAGTAA
Found at i:36767291 original size:52 final size:52
Alignment explanation
Indices: 36767213--36767314 Score: 134
Period size: 52 Copynumber: 2.0 Consensus size: 52
36767203 AACTAATATC
* * *
36767213 GCAACAAAACTGCCAGTAATAGTAACGTAGCAAAGCTGCCAGTAACAGTAAT
1 GCAACAAAACTGCCAGTAATAATAACGCAGCAAAGCTGCCAATAACAGTAAT
* * *
36767265 GCAACAGAGCTGCCAGT-ATCAATAACGCAGTAAAGCTGCCAATAACAGTA
1 GCAACAAAACTGCCAGTAAT-AATAACGCAGCAAAGCTGCCAATAACAGTA
36767315 TTTGTGGCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 2 0.05
52 41 0.95
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.17
Consensus pattern (52 bp):
GCAACAAAACTGCCAGTAATAATAACGCAGCAAAGCTGCCAATAACAGTAAT
Found at i:36767557 original size:27 final size:27
Alignment explanation
Indices: 36767524--36767795 Score: 267
Period size: 27 Copynumber: 10.1 Consensus size: 27
36767514 TACACTATAG
*
36767524 GGGTATTTCT-ATAATTTTACCCATCAA
1 GGGTATTT-TGATAATTTTACCCATCGA
* * *
36767551 GGTTATTTTAATAATTTTAACCATCGA
1 GGGTATTTTGATAATTTTACCCATCGA
* * *
36767578 GGGTATTTTGGTCATTTTACCCATCAA
1 GGGTATTTTGATAATTTTACCCATCGA
* * *
36767605 GGGTATTTTGGTAATTTTACCAATCGG
1 GGGTATTTTGATAATTTTACCCATCGA
* *
36767632 GGGTATTTCGATAATTTTACCTATCGA
1 GGGTATTTTGATAATTTTACCCATCGA
* *
36767659 GGGTATTTTGGTAATTTTACCTATCGA
1 GGGTATTTTGATAATTTTACCCATCGA
** * * *
36767686 TAGTATTTCGGTAGTTTTACCCATCGA
1 GGGTATTTTGATAATTTTACCCATCGA
* * * *
36767713 GGGTGTTTTGTTCATTTTACCTATCGA
1 GGGTATTTTGATAATTTTACCCATCGA
* * *
36767740 TGGTAGTTTGGTAATTTTACCCATCGA
1 GGGTATTTTGATAATTTTACCCATCGA
* * *
36767767 GGGTATTTCGGTAATTTTACCCTTCGA
1 GGGTATTTTGATAATTTTACCCATCGA
36767794 GG
1 GG
36767796 CTAATTTAGT
Statistics
Matches: 202, Mismatches: 42, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 1 0.00
27 201 1.00
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGATAATTTTACCCATCGA
Found at i:36767595 original size:54 final size:54
Alignment explanation
Indices: 36767510--36767795 Score: 310
Period size: 54 Copynumber: 5.3 Consensus size: 54
36767500 TATAACAGTC
* ** * * **
36767510 ATTTTACACTATAG-GGGTATTTCTATAATTTTACCCATCAAGGTTATTTTAATA
1 ATTTTAC-CTATCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGGTA
* * *
36767564 ATTTTAACC-ATCGAGGGTATTTTGGTCATTTTACCCATCAAGGGTATTTTGGTA
1 ATTTT-ACCTATCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGGTA
* * * *
36767618 ATTTTACCAATCGGGGGTATTTCGATAATTTTACCTATCGAGGGTATTTTGGTA
1 ATTTTACCTATCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGGTA
** * * * *
36767672 ATTTTACCTATCGATAGTATTTCGGTAGTTTTACCCATCGAGGGTGTTTTGTTC
1 ATTTTACCTATCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGGTA
* *
36767726 ATTTTACCTATCGATGGTAGTTT-GGTAATTTTACCCATCGAGGGTATTTCGGTA
1 ATTTTACCTATCGAGGGTA-TTTCGGTAATTTTACCCATCGAGGGTATTTTGGTA
36767780 ATTTTACCCT-TCGAGG
1 ATTTTA-CCTATCGAGG
36767796 CTAATTTAGT
Statistics
Matches: 196, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
53 6 0.03
54 182 0.93
55 8 0.04
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (54 bp):
ATTTTACCTATCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGGTA
Found at i:36767639 original size:81 final size:81
Alignment explanation
Indices: 36767524--36767795 Score: 339
Period size: 81 Copynumber: 3.4 Consensus size: 81
36767514 TACACTATAG
** * * *
36767524 GGGTATTTCTATAATTTTACCCATCAAGGTTATTTTAATAATTTTAACC-ATCGAGGGTATTTTG
1 GGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGATAATTTT-ACCTATCGAGGGTATTTTG
* *
36767588 GTCATTTTACCCATCAA
65 GTAATTTTACCCATCGA
* * * *
36767605 GGGTATTTTGGTAATTTTACCAATCGGGGGTATTTCGATAATTTTACCTATCGAGGGTATTTTGG
1 GGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGATAATTTTACCTATCGAGGGTATTTTGG
*
36767670 TAATTTTACCTATCGA
66 TAATTTTACCCATCGA
** * * * * * *
36767686 TAGTATTTCGGTAGTTTTACCCATCGAGGGTGTTTTGTTCATTTTACCTATCGATGGTAGTTTGG
1 GGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGATAATTTTACCTATCGAGGGTATTTTGG
36767751 TAATTTTACCCATCGA
66 TAATTTTACCCATCGA
*
36767767 GGGTATTTCGGTAATTTTACCCTTCGAGG
1 GGGTATTTCGGTAATTTTACCCATCGAGG
36767796 CTAATTTAGT
Statistics
Matches: 161, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
80 3 0.02
81 158 0.98
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGATAATTTTACCTATCGAGGGTATTTTGG
TAATTTTACCCATCGA
Found at i:36767824 original size:53 final size:54
Alignment explanation
Indices: 36767753--36767890 Score: 163
Period size: 53 Copynumber: 2.6 Consensus size: 54
36767743 TAGTTTGGTA
* * * * *
36767753 ATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCTTC-GAGGCTAATTTAGT-
1 ATTTTACCCTTCGGGGGTAATTCGGTCATTTTACCCTTCGGAGG-TAATTCAGTC
* * *
36767806 TTTTTATCCTTCGGGGGTAATTCGATCATTTTACCCTTCGGAGGTAATTCAGTC
1 ATTTTACCCTTCGGGGGTAATTCGGTCATTTTACCCTTCGGAGGTAATTCAGTC
**
36767860 ATTTTACCCTTTTGGGGTAATTCGGTCATTT
1 ATTTTACCCTTCGGGGGTAATTCGGTCATTT
36767891 GTGGCCCATT
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
53 40 0.57
54 30 0.43
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.42
Consensus pattern (54 bp):
ATTTTACCCTTCGGGGGTAATTCGGTCATTTTACCCTTCGGAGGTAATTCAGTC
Found at i:36767844 original size:27 final size:27
Alignment explanation
Indices: 36767753--36767890 Score: 111
Period size: 27 Copynumber: 5.1 Consensus size: 27
36767743 TAGTTTGGTA
* * * * *
36767753 ATTTTACCCATCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGGGGGTAATTCGATC
* * *
36767780 ATTTTACCCTTCGAGGCTAATT-TAGT-
1 ATTTTACCCTTCGGGGGTAATTCGA-TC
* *
36767806 TTTTTATCCTTCGGGGGTAATTCGATC
1 ATTTTACCCTTCGGGGGTAATTCGATC
*
36767833 ATTTTACCCTTCGGAGGTAATTC-AGTC
1 ATTTTACCCTTCGGGGGTAATTCGA-TC
** *
36767860 ATTTTACCCTTTTGGGGTAATTCGGTC
1 ATTTTACCCTTCGGGGGTAATTCGATC
36767887 ATTT
1 ATTT
36767891 GTGGCCCATT
Statistics
Matches: 89, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
26 20 0.22
27 69 0.78
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTTCGGGGGTAATTCGATC
Found at i:36775161 original size:50 final size:50
Alignment explanation
Indices: 36775046--36775288 Score: 324
Period size: 50 Copynumber: 4.8 Consensus size: 50
36775036 GATAATAACA
* * ** *
36775046 TGCCAAAGCCATGTCCCAGACCTGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
36775097 TGCCCATGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
36775147 TGCCAACGTCATGTCCCAGACATGGTCATACAAGGGACCTCTCATCTCGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
36775197 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
36775247 TGCTAACACCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36775289 TTACCCAAAT
Statistics
Matches: 167, Mismatches: 25, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
50 134 0.80
51 33 0.20
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:36779745 original size:50 final size:50
Alignment explanation
Indices: 36779626--36779866 Score: 320
Period size: 50 Copynumber: 4.8 Consensus size: 50
36779616 GATAATAACA
* * ** * *
36779626 TGCCAAAGCCATGTCCCAGACATGGTCTTACATCGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCAG
* * **
36779677 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* * * *
36779727 TGCCTACGCCATGACCCAGACATGGTCTTACATGGGAACTCTCATCGCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* * *
36779777 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGAACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
36779827 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCT
36779867 TTTTTCCCAA
Statistics
Matches: 165, Mismatches: 25, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 133 0.81
51 32 0.19
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
Found at i:36781992 original size:27 final size:27
Alignment explanation
Indices: 36781951--36782334 Score: 328
Period size: 27 Copynumber: 14.2 Consensus size: 27
36781941 GGCTTGGGCT
* *
36781951 GTAAAATTACCGAAATACTCTCGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* * *
36781978 GTAAAATTATAGAAATACCCCCAAAT-G
1 GTAAAATTATCGAAATACCCTC-GATGG
* * ** * *
36782005 GTAAAATTACCGACATATACTCGACGA
1 GTAAAATTATCGAAATACCCTCGATGG
* * * *
36782032 GTAAATTTACCGAAATACCCTCGACGA
1 GTAAAATTATCGAAATACCCTCGATGG
* * *
36782059 GTAAATTTACCAAAATACCCTCGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
*
36782086 GTAAATTTATCGAAATACCCTCGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
*
36782113 GTAAAATTATCGAAATACCCCTAGA-GG
1 GTAAAATTATCGAAATA-CCCTCGATGG
* * *
36782140 GTAAAATTACCGAAATACCCTCTATAG
1 GTAAAATTATCGAAATACCCTCGATGG
* * *
36782167 GTAAATTTA-CTAAAATACCCTCGATAG
1 GTAAAATTATC-GAAATACCCTCGATGG
* * *
36782194 GTACAATTATTGAAATACCCTCAATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* * *
36782221 GTAAATTTATCGAAATACCGT-TATTGG
1 GTAAAATTATCGAAATACCCTCGA-TGG
* * *
36782248 GAAAAATTA-CTAAAATACCCCCGATGG
1 GTAAAATTATC-GAAATACCCTCGATGG
*
36782275 GTAAAATTATCGAAATACCCCCGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* * *
36782302 GTAAAATTACCGTAATACCCTCGTTAGG
1 GTAAAATTATCGAAATACCCTCGAT-GG
36782330 GTAAA
1 GTAAA
36782335 TGACTGCTAG
Statistics
Matches: 291, Mismatches: 55, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
26 9 0.03
27 265 0.91
28 17 0.06
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.26
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCTCGATGG
Found at i:36782501 original size:27 final size:27
Alignment explanation
Indices: 36782459--36782512 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
36782449 GAAGTCCTAA
36782459 TACTAGTGGCTCTGCCACA-ACTACTGT
1 TACTAGTGGCTCTGCCACATA-TACTGT
* *
36782486 TACTCGTGGCTTTGCCACATATACTGT
1 TACTAGTGGCTCTGCCACATATACTGT
36782513 ACTGCAGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Consensus pattern (27 bp):
TACTAGTGGCTCTGCCACATATACTGT
Found at i:36793875 original size:10 final size:10
Alignment explanation
Indices: 36793862--36793886 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
36793852 AATAGAAGAA
36793862 AAATACAAAT
1 AAATACAAAT
36793872 AAATACAAAT
1 AAATACAAAT
36793882 AAATA
1 AAATA
36793887 TTTTAAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (10 bp):
AAATACAAAT
Found at i:36802052 original size:27 final size:27
Alignment explanation
Indices: 36802022--36802082 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
36802012 TCAATTCCTA
36802022 GGGGTATAACAGTCAATTTACCCTATG
1 GGGGTATAACAGTCAATTTACCCTATG
**** *
36802049 GGGGTATTTTGGTCATTTTACCCTATG
1 GGGGTATAACAGTCAATTTACCCTATG
*
36802076 AGGGTAT
1 GGGGTAT
36802083 TTCGGTAATT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (27 bp):
GGGGTATAACAGTCAATTTACCCTATG
Found at i:36802083 original size:27 final size:27
Alignment explanation
Indices: 36802033--36802096 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
36802023 GGGTATAACA
* * *
36802033 GTCAATTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
36802060 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
36802087 GTAATTTTAC
1 GTCATTTTAC
36802097 TCTTCGAGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:36807098 original size:19 final size:18
Alignment explanation
Indices: 36807052--36807102 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
36807042 TCTTTACATA
36807052 TTTATTTCTTGTTTTCAAT
1 TTTATTT-TTGTTTTCAAT
* *
36807071 TTTAGTTTTAGTTTTCATT
1 TTTA-TTTTTGTTTTCAAT
36807090 TTTATTTTT-TTTT
1 TTTATTTTTGTTTT
36807103 TGTTTGGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 4 0.14
18 4 0.14
19 17 0.61
20 3 0.11
ACGTcount: A:0.14, C:0.06, G:0.06, T:0.75
Consensus pattern (18 bp):
TTTATTTTTGTTTTCAAT
Found at i:36808354 original size:18 final size:18
Alignment explanation
Indices: 36808324--36808366 Score: 70
Period size: 17 Copynumber: 2.4 Consensus size: 18
36808314 ATTTTAAGTC
*
36808324 ATTTGTTTATTTTTC-TT
1 ATTTATTTATTTTTCGTT
36808341 ATTTATTTATTTTTCGTT
1 ATTTATTTATTTTTCGTT
36808359 ATTTATTT
1 ATTTATTT
36808367 TTATGTCATC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (18 bp):
ATTTATTTATTTTTCGTT
Found at i:36813333 original size:86 final size:86
Alignment explanation
Indices: 36813231--36813525 Score: 430
Period size: 86 Copynumber: 3.4 Consensus size: 86
36813221 TTTTAGAAAT
* * * *
36813231 AAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTCCCAAAAACGCTGCTATAGATCAGGAG
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAAAAATGCCGCTATAGATCAGGAC
* *
36813296 CTTTAGCGGTGCTTTTTCCAC
66 CTTTAGCGGCGCTTTTCCCAC
* * *
36813317 AAACGCCGCTATAGATCAAGAGCTTTAGCGGCGCTTTTTCCACAAATGCCGCTATAGATCAGGAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAAAAATGCCGCTATAGATCAGGAC
36813382 CTTTAGCGGCGCTTTTCCCAC
66 CTTTAGCGGCGCTTTTCCCAC
* * *
36813403 AAACGCCGCTATAGATCAAGACCTTTAGCAGCGCTTTTCCCAAAAATGCCACTATA-ACTTAGGA
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAAAAATGCCGCTATAGA-TCAGGA
*
36813467 CCTTTAGCGGCGCTTTTCCCAA
65 CCTTTAGCGGCGCTTTTCCCAC
* * *
36813489 AAACACCGCTATAGCTCAAGACCTTTAGCGACGCTTT
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTT
36813526 GATTACAAAC
Statistics
Matches: 188, Mismatches: 20, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
85 1 0.01
86 187 0.99
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (86 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAAAAATGCCGCTATAGATCAGGAC
CTTTAGCGGCGCTTTTCCCAC
Found at i:36813542 original size:43 final size:43
Alignment explanation
Indices: 36813231--36813525 Score: 385
Period size: 43 Copynumber: 6.9 Consensus size: 43
36813221 TTTTAGAAAT
* *
36813231 AAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTCCCAA
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
36813274 AAACGCTGCTATAGATCAGGAGCTTTAGCGGTGCTTTTTCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* *
36813317 AAACGCCGCTATAGATCAAGAGCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* *
36813360 AAATGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* *
36813403 AAACGCCGCTATAGATCAAGACCTTTAGCAGCGCTTTTCCCAA
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
36813446 AAATGCCACTATA-ACTTAGGACCTTTAGCGGCGCTTTTCCCAA
1 AAACGCCGCTATAGA-TCAAGACCTTTAGCGGCGCTTTTCCCAC
* * *
36813489 AAACACCGCTATAGCTCAAGACCTTTAGCGACGCTTT
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTT
36813526 GATTACAAAC
Statistics
Matches: 221, Mismatches: 29, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
42 1 0.00
43 220 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:36813558 original size:86 final size:84
Alignment explanation
Indices: 36813231--36813564 Score: 289
Period size: 86 Copynumber: 3.9 Consensus size: 84
36813221 TTTTAGAAAT
* * * * * * * *
36813231 AAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTCCCAAAAACGCTGCTATAGAT-CAGGA
1 AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTT--TACAAATGCCGCTAAAAATAC-GGA
* * *
36813295 GCTTTAGCGGTGCTTTTTCCAC
63 CCTTTAGCGGCGCTTTTCCCAC
* * * *
36813317 AAACGCCGCTATAGATCAAGAGCTTTAGCGGCGCTTTTTCCACAAATGCCGCTATAGAT-CAGGA
1 AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTT--ACAAATGCCGCTAAAAATAC-GGA
36813381 CCTTTAGCGGCGCTTTTCCCAC
63 CCTTTAGCGGCGCTTTTCCCAC
* * * **
36813403 AAACGCCGCTATAGATCAAGACCTTTAGC-AGCGCTTTTCCCAAAAATGCCACTATAACTTA-GG
1 AAACGCCGCTATAGATCAAGACCTTTAGCGA-CGCTTTT--TACAAATGCCGCTA-AAAATACGG
*
36813466 ACCTTTAGCGGCGCTTTTCCCAA
62 ACCTTTAGCGGCGCTTTTCCCAC
* * * * **
36813489 AAACACCGCTATAGCTCAAGACCTTTAGCGACGCTTTGATTACAAACGCCGCTAAAAATACCGTT
1 AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTT--TTACAAATGCCGCTAAAAATACGGAC
36813554 CTTTAGCGGCG
64 CTTTAGCGGCG
36813565 TTTATGGAAA
Statistics
Matches: 208, Mismatches: 29, Indels: 22
0.80 0.11 0.08
Matches are distributed among these distances:
85 4 0.02
86 200 0.96
87 3 0.01
88 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (84 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTTACAAATGCCGCTAAAAATACGGACCT
TTAGCGGCGCTTTTCCCAC
Found at i:36815243 original size:41 final size:41
Alignment explanation
Indices: 36815176--36815492 Score: 390
Period size: 41 Copynumber: 7.8 Consensus size: 41
36815166 GAGTTTTCGA
*
36815176 GGCTTTAGCGGCGTTTCTG-AGAAAGCGCCGCTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAG-AAGCGCCGCTAATGCTCTG
*
36815217 GGCTTTAGGGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTG
* *
36815258 GGCTTTAGGGGCGTTTTTGAAGAAGCGCCACTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTG
* * * *
36815299 TGCTTTAGCGACGTTTCTGAA-AAGGCGCTGCTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAGAA-GCGCCGCTAATGCTCTG
*
36815340 GGCTTTAGCGGTGTTTTTGAAGAAGCGCCGCTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTG
* * * *
36815381 GGCTTTAGCAGCGTTTTTTAAAAAGCGCTGCTAATGCTC-G
1 GGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTG
* * * *
36815421 AGTCTTTAGCGGTGTTTTTGAAAAAGCGCCGCTATTGCTCT-
1 -GGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTG
*** *
36815462 ATTTTTAGCGGCGTTTTTGAAAAAGCGCCGC
1 GGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
36815493 AAAAAATATT
Statistics
Matches: 243, Mismatches: 28, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
40 31 0.13
41 208 0.86
42 4 0.02
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (41 bp):
GGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTG
Found at i:36816842 original size:15 final size:14
Alignment explanation
Indices: 36816816--36816869 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
36816806 ATTAATTATC
36816816 ATTATAGTTTAGGG
1 ATTATAGTTTAGGG
36816830 ATTATAGGTTTAGGG
1 ATTATA-GTTTAGGG
* *
36816845 ATTATTGTTTATGG
1 ATTATAGTTTAGGG
* *
36816859 TTTACAGTTTA
1 ATTATAGTTTA
36816870 AGGGTTAGGG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
14 21 0.62
15 13 0.38
ACGTcount: A:0.26, C:0.02, G:0.24, T:0.48
Consensus pattern (14 bp):
ATTATAGTTTAGGG
Found at i:36816881 original size:21 final size:22
Alignment explanation
Indices: 36816851--36816927 Score: 63
Period size: 22 Copynumber: 3.5 Consensus size: 22
36816841 AGGGATTATT
*
36816851 GTTTATGGTTTACA-GTTTAAGG
1 GTTTAGGGTTTA-AGGTTTAAGG
*
36816873 G-TTAGGGTTTAAGGTTTAGGG
1 GTTTAGGGTTTAAGGTTTAAGG
* *
36816894 GTTTAGGATTT-AGTGGTT-AGTG
1 GTTTAGGGTTTAAG-GTTTAAG-G
36816916 GTTTAGGGTTTA
1 GTTTAGGGTTTA
36816928 TATTTCACGA
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
20 1 0.02
21 20 0.45
22 23 0.52
ACGTcount: A:0.19, C:0.01, G:0.35, T:0.44
Consensus pattern (22 bp):
GTTTAGGGTTTAAGGTTTAAGG
Found at i:36816882 original size:14 final size:15
Alignment explanation
Indices: 36816865--36816898 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
36816855 ATGGTTTACA
36816865 GTTTAAGGGTTA-GG
1 GTTTAAGGGTTAGGG
*
36816879 GTTTAAGGTTTAGGG
1 GTTTAAGGGTTAGGG
36816894 GTTTA
1 GTTTA
36816899 GGATTTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (15 bp):
GTTTAAGGGTTAGGG
Found at i:36816897 original size:15 final size:15
Alignment explanation
Indices: 36816865--36816911 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
36816855 ATGGTTTACA
*
36816865 GTTTAAGGGTTA-GG
1 GTTTAAGGTTTAGGG
36816879 GTTTAAGGTTTAGGG
1 GTTTAAGGTTTAGGG
*
36816894 GTTT-AGGATTTAGTG
1 GTTTAAGG-TTTAGGG
36816909 GTT
1 GTT
36816912 AGTGGTTTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 14 0.48
15 15 0.52
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.43
Consensus pattern (15 bp):
GTTTAAGGTTTAGGG
Found at i:36817365 original size:21 final size:22
Alignment explanation
Indices: 36817341--36817381 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
36817331 GCCTTGTTTT
36817341 CCTAA-ATTTCCCCCTAAAACC
1 CCTAATATTTCCCCCTAAAACC
* *
36817362 CCTAATTTTTCCCTCTAAAA
1 CCTAATATTTCCCCCTAAAA
36817382 TGGGTATCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.32, C:0.37, G:0.00, T:0.32
Consensus pattern (22 bp):
CCTAATATTTCCCCCTAAAACC
Found at i:36817514 original size:24 final size:24
Alignment explanation
Indices: 36817487--36817535 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
36817477 TCTCAACCAC
36817487 CGTCTTTGTTTTTCTCTCGTTTAT
1 CGTCTTTGTTTTTCTCTCGTTTAT
36817511 CGTCTTTGTTTTTCTCTCGTTTAT
1 CGTCTTTGTTTTTCTCTCGTTTAT
36817535 C
1 C
36817536 CGGTCGGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.04, C:0.22, G:0.12, T:0.61
Consensus pattern (24 bp):
CGTCTTTGTTTTTCTCTCGTTTAT
Found at i:36821874 original size:43 final size:43
Alignment explanation
Indices: 36821771--36821997 Score: 271
Period size: 43 Copynumber: 5.3 Consensus size: 43
36821761 AAGATATATT
* *
36821771 TTTAGCGGCGTTTGTGTGAAAATCGTCGCTAAAGGTCTAT--T-
1 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTC-ATGGTC
* *
36821812 TTATAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAAGCCATGGTC
1 TT-TAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGGTC
* * * * *
36821856 TTTAGCGGCGTTTCTGGGAGAAGCGTCGTTAAAGGTCATGATA
1 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGGTC
* * *
36821899 TTTAGCGGCGTTTGTGGTAAAAGCATCGTTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGGTC
* * *
36821942 TTTAGCGGCGTTTATGGAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGGTC
*
36821985 TTTAGTGGCGTTT
1 TTTAGCGGCGTTT
36821998 ATTTTAAAAA
Statistics
Matches: 159, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
41 4 0.03
42 31 0.19
43 122 0.77
44 2 0.01
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.31
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGGTC
Found at i:36822072 original size:22 final size:22
Alignment explanation
Indices: 36822042--36822084 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
36822032 TAGCAGCGCT
* * *
36822042 AAAATGCGCCGTTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
36822064 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
36822085 GTTTAGGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.26, G:0.21, T:0.14
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:36823122 original size:3 final size:3
Alignment explanation
Indices: 36823116--36823163 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
36823106 AAAAAATCAT
36823116 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
36823164 AGGAATCCCC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:36824703 original size:22 final size:24
Alignment explanation
Indices: 36824666--36824709 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
36824656 AATAACTTAG
36824666 GGAAATTTAGGGGAAACGAAGTTA
1 GGAAATTTAGGGGAAACGAAGTTA
*
36824690 GGAAA-TT-GGGGAAATGAAGT
1 GGAAATTTAGGGGAAACGAAGT
36824710 CGGGGAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 2 0.11
24 5 0.26
ACGTcount: A:0.41, C:0.02, G:0.36, T:0.20
Consensus pattern (24 bp):
GGAAATTTAGGGGAAACGAAGTTA
Found at i:36825369 original size:14 final size:14
Alignment explanation
Indices: 36825331--36825413 Score: 55
Period size: 14 Copynumber: 5.9 Consensus size: 14
36825321 TCCAAAGAAC
*
36825331 AAACT-TAAACACT
1 AAACTCTAAACCCT
*
36825344 AAATTCTAAACCCT
1 AAACTCTAAACCCT
*
36825358 AAACTCTTAACCCCT
1 AAACTC-TAAACCCT
*
36825373 -ATCTTCTAAACCCT
1 AAAC-TCTAAACCCT
* *
36825387 AAA-TCATAAAACAT
1 AAACTC-TAAACCCT
*
36825401 AAACCCTAAACCC
1 AAACTCTAAACCC
36825414 CTAACCCCTC
Statistics
Matches: 52, Mismatches: 12, Indels: 11
0.69 0.16 0.15
Matches are distributed among these distances:
13 6 0.12
14 35 0.67
15 11 0.21
ACGTcount: A:0.45, C:0.31, G:0.00, T:0.24
Consensus pattern (14 bp):
AAACTCTAAACCCT
Found at i:36825551 original size:21 final size:21
Alignment explanation
Indices: 36825527--36825586 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
36825517 CCTTAAGTCA
*
36825527 CTAACTCTTAACCCCTAACCC
1 CTAACTCCTAACCCCTAACCC
* *
36825548 CTAACCCCTAACCCCTAACCT
1 CTAACTCCTAACCCCTAACCC
* *
36825569 CTAACTACTAAGCCCTAA
1 CTAACTCCTAACCCCTAA
36825587 ACCTTATTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.32, C:0.45, G:0.02, T:0.22
Consensus pattern (21 bp):
CTAACTCCTAACCCCTAACCC
Found at i:36825579 original size:14 final size:14
Alignment explanation
Indices: 36825535--36825586 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
36825525 CACTAACTCT
*
36825535 TAACCCCTAACCCC
1 TAACCCCTAACCAC
*
36825549 TAACCCCTAACCCC
1 TAACCCCTAACCAC
* *
36825563 TAACCTCTAACTAC
1 TAACCCCTAACCAC
*
36825577 TAAGCCCTAA
1 TAACCCCTAA
36825587 ACCTTATTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.33, C:0.46, G:0.02, T:0.19
Consensus pattern (14 bp):
TAACCCCTAACCAC
Found at i:36825586 original size:7 final size:7
Alignment explanation
Indices: 36825535--36825573 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
36825525 CACTAACTCT
36825535 TAACCCC
1 TAACCCC
36825542 TAACCCC
1 TAACCCC
36825549 TAACCCC
1 TAACCCC
36825556 TAACCCC
1 TAACCCC
*
36825563 TAACCTC
1 TAACCCC
36825570 TAAC
1 TAAC
36825574 TACTAAGCCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.18
Consensus pattern (7 bp):
TAACCCC
Found at i:36825742 original size:86 final size:89
Alignment explanation
Indices: 36825539--36825730 Score: 257
Period size: 89 Copynumber: 2.2 Consensus size: 89
36825529 AACTCTTAAC
* * ** *
36825539 CCCTAACCCCTAACCCCTAACCCCTAA-CCTCTAACTACTAAGCCCTAAACCTTATTTAATATAT
1 CCCTAAACCCTAA-CCCTAA-CCCAAATCC-CTAACCCCTAACCCCTAAACCTTATTTAATATAT
36825603 ACATTAAAAAACACTAATTAATCTAAA
63 ACATTAAAAAACACTAATTAATCTAAA
* *
36825630 CGCTAAACCCTAACCCTAACCCAAATCCCTAACCCCTAACCCCTAAACTTTATTTAATATA-A-A
1 CCCTAAACCCTAACCCTAACCCAAATCCCTAACCCCTAACCCCTAAACCTTATTTAATATATACA
*
36825693 TTAAAATA-ACTAATTAATCTAAA
66 TTAAAAAACACTAATTAATCTAAA
36825716 CCCTAAACCCTAACC
1 CCCTAAACCCTAACC
36825731 TGACATTAAA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
86 29 0.32
87 8 0.09
88 1 0.01
89 34 0.37
90 8 0.09
91 11 0.12
ACGTcount: A:0.41, C:0.32, G:0.01, T:0.26
Consensus pattern (89 bp):
CCCTAAACCCTAACCCTAACCCAAATCCCTAACCCCTAACCCCTAAACCTTATTTAATATATACA
TTAAAAAACACTAATTAATCTAAA
Found at i:36826312 original size:41 final size:41
Alignment explanation
Indices: 36826236--36826636 Score: 384
Period size: 41 Copynumber: 9.8 Consensus size: 41
36826226 AATTTTTTTT
36826236 GCGGCGCCTT-TTCAAAAACGCCGCTAAAGCCCTGAGCATTA
1 GCGGCG-CTTATTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * ** *
36826277 ACGACGATTATTGGAAAACGCCGCTAAAGCTCTGAGCATTA
1 GCGGCGCTTATTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * *
36826318 GTGGCGCTTTTTCAAAAACGCCGCTAAATCCCTTAGCATTA
1 GCGGCGCTTATTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * *
36826359 GCGGCGCTTTTTCAAAAACACCGCTAAA-TCCTCGAGCATTA
1 GCGGCGCTTATTCAAAAACGCCGCTAAAGCCCT-GAGCATTA
36826400 GCGGCGCTT-TTCCAAAAACGCCGCTAAAGCCCCT-AGCATTA
1 GCGGCGCTTATT-CAAAAACGCCGCTAAAG-CCCTGAGCATTA
* ** * * *
36826441 GCGG-GTCATATTGGAAAACTCTGCTAAAGCCCCGAGCATTA
1 GCGGCG-CTTATTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * ** * * *
36826482 GTGGCACTTATTGGAAAACACCACTAAAGCTCTGAGCATTA
1 GCGGCGCTTATTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * *
36826523 GCGGCGCTTTTTAAAAAACGCCGCTAAATGCCC-GAACATTA
1 GCGGCGCTTATTCAAAAACGCCGCTAAA-GCCCTGAGCATTA
* * * * *
36826564 GTGGCGCTTTTTAAAAAACGCCGCTTAAGCCCCGAGCATTA
1 GCGGCGCTTATTCAAAAACGCCGCTAAAGCCCTGAGCATTA
36826605 GCGGCGCTT-TTCCAAAAACGCCGCTAAAGCCC
1 GCGGCGCTTATT-CAAAAACGCCGCTAAAGCCC
36826637 CAAAAGATCA
Statistics
Matches: 297, Mismatches: 51, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
40 17 0.06
41 272 0.92
42 5 0.02
43 3 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (41 bp):
GCGGCGCTTATTCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:36826377 original size:82 final size:81
Alignment explanation
Indices: 36826238--36826636 Score: 433
Period size: 82 Copynumber: 4.9 Consensus size: 81
36826228 TTTTTTTTGC
* * * * * **
36826238 GGCGCCTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAACGACGATTATTGGAAAACGCCGCTA
1 GGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTA
*
36826303 AAGCTCTGAGCATTAGT
66 AAGC-CCGAGCATTAGT
* * *
36826320 GGCGCTTTTTCAAAAACGCCGCTAAATCCCTTAGCATTAGCGGCGCTTTTTCAAAAACACCGCTA
1 GGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTA
* *
36826385 AATCCTCGAGCATTAGC
66 AAGCC-CGAGCATTAGT
* * * ** * *
36826402 GGCGCTTTTCCAAAAACGCCGCTAAAGCCCCT-AGCATTAGCGG-GTCATATTGGAAAACTCTGC
1 GGCGCTTTTTCAAAAACGCCGCTAAAG-CCCTGAGCATTAGCGGCG-CTTTTTCAAAAACGCCGC
36826465 TAAAGCCCCGAGCATTAGT
64 TAAAG-CCCGAGCATTAGT
* * ** * * * *
36826484 GGCACTTATTGGAAAACACCACTAAAGCTCTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTA
1 GGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTA
*
36826549 AATGCCCGAACATTAGT
66 AA-GCCCGAGCATTAGT
* * * *
36826566 GGCGCTTTTTAAAAAACGCCGCTTAAGCCCCGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTA
1 GGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTA
36826631 AAGCCC
66 AAGCCC
36826637 CAAAAGATCA
Statistics
Matches: 261, Mismatches: 49, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
81 9 0.03
82 244 0.93
83 8 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (81 bp):
GGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTA
AAGCCCGAGCATTAGT
Found at i:36829776 original size:11 final size:11
Alignment explanation
Indices: 36829760--36829786 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
36829750 TGTAAACACA
36829760 TAAAATAATTT
1 TAAAATAATTT
36829771 TAAAATAATTT
1 TAAAATAATTT
36829782 TAAAA
1 TAAAA
36829787 CTTTGAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
TAAAATAATTT
Found at i:36831942 original size:6 final size:7
Alignment explanation
Indices: 36831927--36831952 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
36831917 CAAAAAATTT
36831927 AAATTAA
1 AAATTAA
36831934 AAATTAA
1 AAATTAA
36831941 AAATTAA
1 AAATTAA
36831948 AAATT
1 AAATT
36831953 GAATTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
AAATTAA
Found at i:36831961 original size:13 final size:13
Alignment explanation
Indices: 36831919--36831952 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
36831909 AAATGCCTCA
*
36831919 AAAAATTTAAATT
1 AAAAATTAAAATT
36831932 AAAAATTAAAAATT
1 AAAAATT-AAAATT
36831946 AAAAATT
1 AAAAATT
36831953 GAATTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAAATTAAAATT
Found at i:36833724 original size:21 final size:20
Alignment explanation
Indices: 36833683--36833726 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
36833673 ACCCCTGCAG
*
36833683 TTTTGAAAATTTGCAATGTT
1 TTTTGAAAATTTACAATGTT
36833703 TTTTGAAAAATTCTACAA-GTT
1 TTTTG-AAAATT-TACAATGTT
36833724 TTT
1 TTT
36833727 GATTTAGTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 5 0.24
21 12 0.57
22 4 0.19
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.50
Consensus pattern (20 bp):
TTTTGAAAATTTACAATGTT
Found at i:36837676 original size:90 final size:90
Alignment explanation
Indices: 36837506--36837680 Score: 246
Period size: 89 Copynumber: 2.0 Consensus size: 90
36837496 AGATGGCCGG
* * * * *
36837506 CACCAGGTACAATTTTCTGTTCCCAAGGCACATTTTTTTTTACTTTGGGACACTGATGGCTGGCA
1 CACCAAGTACAATTTTCGGTTCCCAAGGCACATTTTTTATTACTTTGGAACACTAATGGCTGGCA
*
36837571 CCAGTGTATTTAAAAAAAATTGGGA
66 ACAGTGTATTTAAAAAAAATTGGGA
* * *
36837596 CACCAAGTACAATTTTCGGTTCCCAATGCATA-TTTTTATTATTTTGGAACACTAATGG-TCGGC
1 CACCAAGTACAATTTTCGGTTCCCAAGGCACATTTTTTATTACTTTGGAACACTAATGGCT-GGC
36837659 AACAGTGTATTTAAAAAAAATT
65 AACAGTGTATTTAAAAAAAATT
36837681 TTGGGTGCTG
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
88 1 0.01
89 46 0.61
90 28 0.37
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (90 bp):
CACCAAGTACAATTTTCGGTTCCCAAGGCACATTTTTTATTACTTTGGAACACTAATGGCTGGCA
ACAGTGTATTTAAAAAAAATTGGGA
Found at i:36838320 original size:22 final size:22
Alignment explanation
Indices: 36838292--36838334 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36838282 GAAACTACTA
36838292 TTTAGAATAATTGTATTTTTTC
1 TTTAGAATAATTGTATTTTTTC
**
36838314 TTTAGAATGTTTGTATTTTTT
1 TTTAGAATAATTGTATTTTTT
36838335 TATATTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.02, G:0.12, T:0.63
Consensus pattern (22 bp):
TTTAGAATAATTGTATTTTTTC
Found at i:36838767 original size:20 final size:20
Alignment explanation
Indices: 36838729--36838765 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
36838719 TTAAAAAGAG
36838729 AATAATTACAAAATAAAATA
1 AATAATTACAAAATAAAATA
*
36838749 AATATTTAC-AAATAAAA
1 AATAATTACAAAATAAAA
36838766 ATCAAAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (20 bp):
AATAATTACAAAATAAAATA
Found at i:36841044 original size:15 final size:15
Alignment explanation
Indices: 36841026--36841057 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
36841016 GTAAAAGCTG
36841026 AAAACAATTAAATAA
1 AAAACAATTAAATAA
*
36841041 AAAACAGTTAAATAA
1 AAAACAATTAAATAA
36841056 AA
1 AA
36841058 CAAAAGGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.06, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAACAATTAAATAA
Found at i:36843146 original size:6 final size:6
Alignment explanation
Indices: 36843114--36843165 Score: 63
Period size: 6 Copynumber: 8.5 Consensus size: 6
36843104 GTCTACATGC
36843114 AAAAT- AAAAT- AAAATA GAAGGAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA -AA--AATA AAAATA AAAATA AAAATA AAAATA
36843163 AAA
1 AAA
36843166 TGTGTAATTT
Statistics
Matches: 43, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.23
6 25 0.58
7 2 0.05
8 2 0.05
9 4 0.09
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:36849167 original size:13 final size:14
Alignment explanation
Indices: 36849149--36849180 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
36849139 AAGTAAAAGC
36849149 TAAAAATAATTAAA
1 TAAAAATAATTAAA
*
36849163 TAAAAATATTTAAA
1 TAAAAATAATTAAA
36849177 TAAA
1 TAAA
36849181 TCTGAAGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAAAATAATTAAA
Found at i:36852184 original size:6 final size:6
Alignment explanation
Indices: 36852163--36852247 Score: 90
Period size: 6 Copynumber: 14.8 Consensus size: 6
36852153 TTTTTTTTTT
36852163 CATTT- CATTT- CATTTC CATTTC CATTTC CAATTT- CATTTC CATTTC
1 CATTTC CATTTC CATTTC CATTTC CATTTC C-ATTTC CATTTC CATTTC
* * **
36852209 CATTTA CATTTC CAATT- CATTAA CATTTC CATTT- CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
36852248 AAATTATATT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
5 22 0.32
6 43 0.62
7 4 0.06
ACGTcount: A:0.24, C:0.26, G:0.00, T:0.51
Consensus pattern (6 bp):
CATTTC
Found at i:36852196 original size:29 final size:28
Alignment explanation
Indices: 36852164--36852247 Score: 116
Period size: 29 Copynumber: 2.9 Consensus size: 28
36852154 TTTTTTTTTC
36852164 ATTTCATTTCATTTCCATTTCCATTTCCA
1 ATTTCATTTCATTTCCATTT-CATTTCCA
36852193 ATTTCATTTCCATTTCCATTTACATTTCCA
1 ATTTCATTT-CATTTCCATTT-CATTTCCA
*
36852223 A-TTCATTAACATTTCCATTTCATTT
1 ATTTCATT-TCATTTCCATTTCATTT
36852248 AAATTATATT
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
28 5 0.10
29 26 0.51
30 20 0.39
ACGTcount: A:0.24, C:0.25, G:0.00, T:0.51
Consensus pattern (28 bp):
ATTTCATTTCATTTCCATTTCATTTCCA
Found at i:36852282 original size:20 final size:20
Alignment explanation
Indices: 36852239--36852314 Score: 66
Period size: 20 Copynumber: 3.6 Consensus size: 20
36852229 TAACATTTCC
36852239 ATTT-CATTTAAA-TTATATT
1 ATTTCCATTTAAATTTA-ATT
*
36852258 TTTTCCATTTAAATTTAATT
1 ATTTCCATTTAAATTTAATT
*
36852278 ATTTCTCATTTCAATTGTTAATTT
1 ATTTC-CATTT-AAAT-TTAA-TT
*
36852302 ATTTTCATTTAAA
1 ATTTCCATTTAAA
36852315 CTTTCATTCC
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
19 3 0.07
20 15 0.33
21 8 0.17
22 5 0.11
23 9 0.20
24 6 0.13
ACGTcount: A:0.32, C:0.09, G:0.01, T:0.58
Consensus pattern (20 bp):
ATTTCCATTTAAATTTAATT
Found at i:36852346 original size:19 final size:19
Alignment explanation
Indices: 36852318--36852356 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
36852308 ATTTAAACTT
36852318 TCATTCCATTTCATAATCA
1 TCATTCCATTTCATAATCA
* *
36852337 TCATTTCATTTCATATTCA
1 TCATTCCATTTCATAATCA
36852356 T
1 T
36852357 TTAACATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.00, T:0.49
Consensus pattern (19 bp):
TCATTCCATTTCATAATCA
Found at i:36852382 original size:14 final size:15
Alignment explanation
Indices: 36852352--36852397 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
36852342 TCATTTCATA
36852352 TTCATTTAACATTTTT
1 TTCATTTAA-ATTTTT
36852368 TTCA-TT-AATTTTT
1 TTCATTTAAATTTTT
36852381 TTCATTTAAATTTTT
1 TTCATTTAAATTTTT
36852396 TT
1 TT
36852398 TCCTAATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.36
14 3 0.11
15 11 0.39
16 4 0.14
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (15 bp):
TTCATTTAAATTTTT
Found at i:36852572 original size:21 final size:21
Alignment explanation
Indices: 36852530--36852572 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
36852520 TATCAGGGTC
*
36852530 ATTTAAAATTTTTCATATTTT
1 ATTTAAAATTTTTCATAATTT
36852551 ATTTAAAATTTTTC-TCAATTT
1 ATTTAAAATTTTTCAT-AATTT
36852572 A
1 A
36852573 AATATCATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTTAAAATTTTTCATAATTT
Found at i:36852830 original size:21 final size:22
Alignment explanation
Indices: 36852804--36853030 Score: 117
Period size: 21 Copynumber: 9.6 Consensus size: 22
36852794 AAATTATCTC
36852804 TTTTTTTC-CATTTAAATTTAA
1 TTTTTTTCTCATTTAAATTTAA
*
36852825 TTTTTTTCTCATTT-CATTTATA
1 TTTTTTTCTCATTTAAATTTA-A
* *
36852847 TTATCTTTCTTCCCATATAAATTTAA
1 -T-T-TTT-TTCTCATTTAAATTTAA
*
36852873 TTTTTTTTCTCATTT-CATTTAAA
1 -TTTTTTTCTCATTTAAATTT-AA
*
36852896 TTATTTTTTTCCATTTAAATATT-A
1 TT-TTTTTCT-CATTTAAAT-TTAA
*
36852920 TTTTTTCTCATTTCATTTAAA-TTACC
1 TTTTTT-TC---TCATTTAAATTTA-A
36852946 TTTTTTTC-CATTTAAATTTAA
1 TTTTTTTCTCATTTAAATTTAA
* *
36852967 ATTTTTTCTCATTT-CATTTAAA
1 TTTTTTTCTCATTTAAATTT-AA
* *
36852989 TTATCTTTCTTTCCATCTTAATTTTAA
1 TT-T-TTT-TCT-CAT-TTAAATTTAA
36853016 TTTTTTTTCTCATTT
1 -TTTTTTTCTCATTT
36853031 CATTTAGATT
Statistics
Matches: 159, Mismatches: 19, Indels: 54
0.69 0.08 0.23
Matches are distributed among these distances:
21 32 0.20
22 23 0.14
23 23 0.14
24 21 0.13
25 12 0.08
26 32 0.20
27 11 0.07
28 5 0.03
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTTTTTCTCATTTAAATTTAA
Found at i:36852872 original size:48 final size:48
Alignment explanation
Indices: 36852783--36853036 Score: 345
Period size: 48 Copynumber: 5.2 Consensus size: 48
36852773 TATTTCCATT
* *
36852783 TCATTTCGTTTAAATTATCTCTTTTTTTCCATTTAAATTTAATTTTTTTC
1 TCATTTCATTTAAATTA--TCTTTCTTTCCATTTAAATTTAATTTTTTTC
* * *
36852833 TCATTTCATTTATATTATCTTTCTTCCCATATAAATTTAATTTTTTTTC
1 TCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAA-TTTTTTTC
36852882 TCATTTCATTTAAATTAT-TTT-TTTCCATTTAAATATT-A-TTTTTTC
1 TCATTTCATTTAAATTATCTTTCTTTCCATTTAAAT-TTAATTTTTTTC
* * *
36852927 TCATTTCATTTAAATTACCTTTTTTTCCATTTAAATTTAAATTTTTTC
1 TCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAATTTTTTTC
*
36852975 TCATTTCATTTAAATTATCTTTCTTTCCATCTTAATTTTAATTTTTTTTC
1 TCATTTCATTTAAATTATCTTTCTTTCCAT-TTAAATTTAA-TTTTTTTC
36853025 TCATTTCATTTA
1 TCATTTCATTTA
36853037 GATTTAAATT
Statistics
Matches: 183, Mismatches: 13, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
45 24 0.13
46 5 0.03
47 26 0.14
48 60 0.33
49 34 0.19
50 34 0.19
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (48 bp):
TCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAATTTTTTTC
Found at i:36852950 original size:27 final size:25
Alignment explanation
Indices: 36852907--36853067 Score: 106
Period size: 27 Copynumber: 6.4 Consensus size: 25
36852897 TATTTTTTTC
36852907 CATTTAAA-TATTATTTTTTCTCATTT
1 CATTTAAATTA-T-TTTTTTCTCATTT
36852933 CATTTAAATTACCTTTTTTTC-CATTT
1 CATTTAAATTA--TTTTTTTCTCATTT
*
36852959 AAATTT-AA--A-TTTTTTCTCATTT
1 -CATTTAAATTATTTTTTTCTCATTT
36852981 CATTTAAATTATCTTTCTTTC-CATCTT
1 CATTTAAATTAT-TTT-TTTCTCAT-TT
* *
36853008 AATTTTAA-T-TTTTTTTCTCATTT
1 CATTTAAATTATTTTTTTCTCATTT
* * *
36853031 CATTTAGATTTAAATTTTCTTCTCTTTT
1 CATTTA-AATT--ATTTTTTTCTCATTT
36853059 CATTTAAAT
1 CATTTAAAT
36853068 GATCTTTCGT
Statistics
Matches: 107, Mismatches: 11, Indels: 33
0.71 0.07 0.22
Matches are distributed among these distances:
21 11 0.10
22 7 0.07
23 10 0.09
24 9 0.08
25 2 0.02
26 22 0.21
27 27 0.25
28 19 0.18
ACGTcount: A:0.25, C:0.14, G:0.01, T:0.60
Consensus pattern (25 bp):
CATTTAAATTATTTTTTTCTCATTT
Found at i:36853099 original size:78 final size:77
Alignment explanation
Indices: 36852812--36853090 Score: 257
Period size: 78 Copynumber: 3.8 Consensus size: 77
36852802 TCTTTTTTTC
* * * * *
36852812 CATTTAAATTTAATTTTTTTCTCATTTCATTTATATTATCTTTC-TTCCCAT-ATAAATTTAATT
1 CATTTAAATTTAAATTTTTTCTCATTTCATTTAAATGATCTTTCGTT-CCATCTTAATTTTAATT
36852875 TTTTTTCTCATTT
65 TTTTTTCTCATTT
** * *
36852888 CATTTAAA-TT--ATTTTTT-TC----CATTTAAAT-AT-TATTTTTTCTCAT-TTCATTTAAAT
1 CATTTAAATTTAAATTTTTTCTCATTTCATTTAAATGATCT-TTCGTTC-CATCTTAATTTTAAT
** *
36852942 TACCTTTT-T--TTC
64 T-TTTTTTCTCATTT
* *
36852954 CATTTAAATTTAAATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATCTTAATTTTAATTT
1 CATTTAAATTTAAATTTTTTCTCATTTCATTTAAATGATCTTTCGTTCCATCTTAATTTTAATTT
36853019 TTTTTCTCATTT
66 TTTTTCTCATTT
* *
36853031 CATTTAGATTTAAATTTTCTTCTCTTTTCATTTAAATGATCTTTCGTTCCATCTTAATTT
1 CATTTAAATTTAAATTTT-TTCTCATTTCATTTAAATGATCTTTCGTTCCATCTTAATTT
36853091 ACGTTTTTTA
Statistics
Matches: 164, Mismatches: 20, Indels: 36
0.75 0.09 0.16
Matches are distributed among these distances:
66 11 0.07
67 7 0.04
68 22 0.13
69 11 0.07
70 2 0.01
72 2 0.01
73 6 0.04
74 16 0.10
75 21 0.13
76 9 0.05
77 19 0.12
78 38 0.23
ACGTcount: A:0.25, C:0.15, G:0.01, T:0.59
Consensus pattern (77 bp):
CATTTAAATTTAAATTTTTTCTCATTTCATTTAAATGATCTTTCGTTCCATCTTAATTTTAATTT
TTTTTCTCATTT
Found at i:36862571 original size:26 final size:26
Alignment explanation
Indices: 36862532--36862601 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
36862522 ACATACCGAC
* * *
36862532 TCACAACTCATGTGAGCAGGTCCATT
1 TCACAGCTCGTGTGAGCAGGCCCATT
*
36862558 TCACAGCTCGTGTGAGTAGGCCCATT
1 TCACAGCTCGTGTGAGCAGGCCCATT
36862584 TCACAGCTCGTGTGAGCA
1 TCACAGCTCGTGTGAGCA
36862602 TTGATGTAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (26 bp):
TCACAGCTCGTGTGAGCAGGCCCATT
Found at i:36879913 original size:9 final size:9
Alignment explanation
Indices: 36879899--36879945 Score: 60
Period size: 9 Copynumber: 5.2 Consensus size: 9
36879889 TTTATAAATG
36879899 TTAATATTT
1 TTAATATTT
36879908 TTAATAATTT
1 TTAAT-ATTT
36879918 TTAATATTT
1 TTAATATTT
*
36879927 TT-CTATTT
1 TTAATATTT
*
36879935 TAAATATTT
1 TTAATATTT
36879944 TT
1 TT
36879946 TATAAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 6 0.19
9 17 0.53
10 9 0.28
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (9 bp):
TTAATATTT
Found at i:36879914 original size:19 final size:18
Alignment explanation
Indices: 36879887--36879928 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
36879877 TTTCTATATG
36879887 TTTTTATAAATGTTAATA
1 TTTTTATAAATGTTAATA
* *
36879905 TTTTTAATAATTTTTAATA
1 TTTTT-ATAAATGTTAATA
36879924 TTTTT
1 TTTTT
36879929 CTATTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTTATAAATGTTAATA
Found at i:36879919 original size:10 final size:10
Alignment explanation
Indices: 36879899--36879986 Score: 53
Period size: 9 Copynumber: 9.1 Consensus size: 10
36879889 TTTATAAATG
36879899 TTAAT-ATTT
1 TTAATAATTT
36879908 TTAATAATTT
1 TTAATAATTT
36879918 TTAAT-ATTT
1 TTAATAATTT
*
36879927 TT-CT-ATTT
1 TTAATAATTT
*
36879935 TAAAT-ATTT
1 TTAATAATTT
*
36879944 TTTATAAATTT
1 TTAAT-AATTT
*
36879955 TCCAAATAATTT
1 T--TAATAATTT
* *
36879967 TTTATAA-GT
1 TTAATAATTT
36879976 TTAATAATTT
1 TTAATAATTT
36879986 T
1 T
36879987 ATTTATATTT
Statistics
Matches: 60, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
8 6 0.10
9 26 0.43
10 15 0.25
11 5 0.08
12 6 0.10
13 2 0.03
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (10 bp):
TTAATAATTT
Found at i:36879955 original size:27 final size:27
Alignment explanation
Indices: 36879882--36879956 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
36879872 GAAGTTTTCT
** *
36879882 ATATGTTTTTATAAATGTTAATATTTTTA
1 ATAT-TTTTTATAAAT-TTTCTATTTTAA
* *
36879911 ATAATTTTTA-ATATTTTTCTATTTTAA
1 ATATTTTTTATA-AATTTTCTATTTTAA
36879938 ATATTTTTTATAAATTTTC
1 ATATTTTTTATAAATTTTC
36879957 CAAATAATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
27 25 0.68
28 9 0.24
29 3 0.08
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (27 bp):
ATATTTTTTATAAATTTTCTATTTTAA
Found at i:36882739 original size:30 final size:30
Alignment explanation
Indices: 36882703--36882762 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
36882693 AGGAGAGCTA
36882703 GAGCTAGAGGCAGTGTTGGGTTCACATTGC
1 GAGCTAGAGGCAGTGTTGGGTTCACATTGC
*
36882733 GAGCTAGAGGCGGTGTTGGGTTCACATTGC
1 GAGCTAGAGGCAGTGTTGGGTTCACATTGC
36882763 TTAAGTGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.18, C:0.17, G:0.38, T:0.27
Consensus pattern (30 bp):
GAGCTAGAGGCAGTGTTGGGTTCACATTGC
Found at i:36883603 original size:42 final size:42
Alignment explanation
Indices: 36883557--36883662 Score: 153
Period size: 42 Copynumber: 2.5 Consensus size: 42
36883547 AGTAGGGTCA
*
36883557 CACGCCCATGTGTCAGGCCGTGTAACTCTCGAAATAGCCCCG
1 CACGCCCATGTGTCAGGCCGTGTAACTCTCAAAATAGCCCCG
*
36883599 CACGCCAATG-GTCCAGGCCGTGTAACTCTCAAAATAGCCCCG
1 CACGCCCATGTGT-CAGGCCGTGTAACTCTCAAAATAGCCCCG
* *
36883641 CACACCCATGTGCCAGG-CGTGT
1 CACGCCCATGTGTCAGGCCGTGT
36883663 GCTAGGCCAT
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
41 7 0.12
42 49 0.86
43 1 0.02
ACGTcount: A:0.23, C:0.36, G:0.24, T:0.18
Consensus pattern (42 bp):
CACGCCCATGTGTCAGGCCGTGTAACTCTCAAAATAGCCCCG
Found at i:36890553 original size:23 final size:23
Alignment explanation
Indices: 36890527--36890575 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
36890517 GTGTGGTAAT
36890527 TATAAATACATGTGTAATAAATA
1 TATAAATACATGTGTAATAAATA
* * *
36890550 TATATATACATTTGTAATTAATA
1 TATAAATACATGTGTAATAAATA
36890573 TAT
1 TAT
36890576 GTACATACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (23 bp):
TATAAATACATGTGTAATAAATA
Found at i:36891794 original size:22 final size:23
Alignment explanation
Indices: 36891759--36891802 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
36891749 GGATTTATAT
36891759 TATTCTGGGTGTGTTAGGTTGGG
1 TATTCTGGGTGTGTTAGGTTGGG
*
36891782 TATTCT-GGTGTGTTTGGTTGG
1 TATTCTGGGTGTGTTAGGTTGG
36891803 ATCCGTGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.07, C:0.05, G:0.41, T:0.48
Consensus pattern (23 bp):
TATTCTGGGTGTGTTAGGTTGGG
Found at i:36901386 original size:45 final size:45
Alignment explanation
Indices: 36901335--36901421 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
36901325 CCAACTACCT
36901335 ACTCTTTTATATTATGGTATAATTACAATATTAGCCCATGAACCC
1 ACTCTTTTATATTATGGTATAATTACAATATTAGCCCATGAACCC
* * *
36901380 ACTCTTTTATATTATGGTATATTTACCATATTAGTCCATGAA
1 ACTCTTTTATATTATGGTATAATTACAATATTAGCCCATGAA
36901422 TTTACTTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.41
Consensus pattern (45 bp):
ACTCTTTTATATTATGGTATAATTACAATATTAGCCCATGAACCC
Found at i:36902950 original size:25 final size:26
Alignment explanation
Indices: 36902922--36902972 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
36902912 AAAGTGGTTG
* * *
36902922 AAAAAGTAGAGAAAAA-ATAAAATAT
1 AAAAAGAAAAGAAAAAGAAAAAATAT
36902947 AAAAAGAAAAGAAAAAGAAAAAATAT
1 AAAAAGAAAAGAAAAAGAAAAAATAT
36902973 TTTATGGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (26 bp):
AAAAAGAAAAGAAAAAGAAAAAATAT
Found at i:36912202 original size:44 final size:42
Alignment explanation
Indices: 36912135--36912303 Score: 153
Period size: 43 Copynumber: 4.0 Consensus size: 42
36912125 CTCCGATATG
* * *
36912135 TGATTTCGTGTAAGACCACGTCTGGGATGTTGGCATCG-ATT
1 TGATTTCGTGTAAGACCATGTCTGGGATATTGGCATCGTATA
* *
36912176 TGAGATTTACGTGTAAGACCATGTCTGAGACATTGGCATCGTATA
1 T--GATTT-CGTGTAAGACCATGTCTGGGATATTGGCATCGTATA
* * * *
36912221 TGATTTCGTGTAAGACCTTGTTTGGGATAGTGACATCG-ATA
1 TGATTTCGTGTAAGACCATGTCTGGGATATTGGCATCGTATA
* * * * *
36912262 GTTGATTACATGTAAGAGCACGTCTGGGACATTGGCATCGTA
1 --TGATTTCGTGTAAGACCATGTCTGGGATATTGGCATCGTA
36912304 CGAGTTTTTT
Statistics
Matches: 101, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
41 4 0.04
42 26 0.26
43 39 0.39
44 29 0.29
45 3 0.03
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGGGATATTGGCATCGTATA
Found at i:36912232 original size:86 final size:84
Alignment explanation
Indices: 36912135--36912303 Score: 207
Period size: 86 Copynumber: 2.0 Consensus size: 84
36912125 CTCCGATATG
* * *
36912135 TGATTTCGTGTAAGACCACGTCTGGGAT-GTTGGCATCGAT-TTGAGATTTACGTGTAAGACCAT
1 TGATTTCGTGTAAGACCACGTCTGGGATAG-TGACATCGATATT--GA-TTACATGTAAGACCAC
36912198 GTCTGAGACATTGGCATCGTATA
62 GTCTGAGACATTGGCATCGTATA
** * *
36912221 TGATTTCGTGTAAGACCTTGTTTGGGATAGTGACATCGATAGTTGATTACATGTAAGAGCACGTC
1 TGATTTCGTGTAAGACCACGTCTGGGATAGTGACATCGATA-TTGATTACATGTAAGACCACGTC
*
36912286 TGGGACATTGGCATCGTA
65 TGAGACATTGGCATCGTA
36912304 CGAGTTTTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
85 33 0.46
86 36 0.50
87 1 0.01
88 2 0.03
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (84 bp):
TGATTTCGTGTAAGACCACGTCTGGGATAGTGACATCGATATTGATTACATGTAAGACCACGTCT
GAGACATTGGCATCGTATA
Found at i:36913308 original size:26 final size:26
Alignment explanation
Indices: 36913258--36913308 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
36913248 CCAATATCGT
* * *
36913258 AGCATAGCTGCCAGTAATGATAATGC
1 AGCAGAGCTGCCAGTAATCAGAATGC
*
36913284 AGCAGAGCTGCCAGTAGTCAGAATG
1 AGCAGAGCTGCCAGTAATCAGAATG
36913309 GCTAAGAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (26 bp):
AGCAGAGCTGCCAGTAATCAGAATGC
Found at i:36913419 original size:32 final size:32
Alignment explanation
Indices: 36913371--36913592 Score: 198
Period size: 32 Copynumber: 6.9 Consensus size: 32
36913361 CCATAAGTAT
* * *
36913371 AGTAATGTGATTGGCACAAAGCCATCAGTAGC
1 AGTAATATGATCGGCACAAAGCCATCAGTAAC
* *
36913403 AGTAATATGATCGGCACACAA-CCATCAATAAT
1 AGTAATATGATCGGCACA-AAGCCATCAGTAAC
* * *
36913435 GGTAACATGATCGGCACAAAGCCATCAGTAGC
1 AGTAATATGATCGGCACAAAGCCATCAGTAAC
* *
36913467 AGTGATATGATCGACACACAA-CCATCAGTAAC
1 AGTAATATGATCGGCACA-AAGCCATCAGTAAC
* * *
36913499 AGTGAA-ATGATCGACACATAGCCATCGGTAAC
1 AGT-AATATGATCGGCACAAAGCCATCAGTAAC
* * * * * *
36913531 GGTAATATAATTGACACAAAGCCATTAGTAAT
1 AGTAATATGATCGGCACAAAGCCATCAGTAAC
* * *
36913563 GGTACTATGATTGGCACAAAGCCATCAGTA
1 AGTAATATGATCGGCACAAAGCCATCAGTA
36913593 GCATCGCAGC
Statistics
Matches: 155, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
31 5 0.03
32 145 0.94
33 5 0.03
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (32 bp):
AGTAATATGATCGGCACAAAGCCATCAGTAAC
Found at i:36913461 original size:64 final size:64
Alignment explanation
Indices: 36913378--36913595 Score: 253
Period size: 64 Copynumber: 3.4 Consensus size: 64
36913368 TATAGTAATG
* * *
36913378 TGATTGGCACAAAGCCATCAGTAGCAGTAATATGATCGGCACACAACCATCAATAATGGTAACA
1 TGATCGGCACAAAGCCATCAGTAGCAGTAATATGATCGACACACAACCATCAGTAATGGTAACA
* **
36913442 TGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGACACACAACCATCAGTAACAGTGAA-A
1 TGATCGGCACAAAGCCATCAGTAGCAGTAATATGATCGACACACAACCATCAGTAATGGT-AACA
* * * * * * * *
36913506 TGATCGACACATAGCCATCGGTAACGGTAATATAATTGACACA-AAGCCATTAGTAATGGT-ACT
1 TGATCGGCACAAAGCCATCAGTAGCAGTAATATGATCGACACACAA-CCATCAGTAATGGTAAC-
36913569 A
64 A
*
36913570 TGATTGGCACAAAGCCATCAGTAGCA
1 TGATCGGCACAAAGCCATCAGTAGCA
36913596 TCGCAGCAAA
Statistics
Matches: 127, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
62 1 0.01
63 2 0.02
64 122 0.96
65 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.21
Consensus pattern (64 bp):
TGATCGGCACAAAGCCATCAGTAGCAGTAATATGATCGACACACAACCATCAGTAATGGTAACA
Found at i:36913624 original size:26 final size:26
Alignment explanation
Indices: 36913595--36913646 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
36913585 CATCAGTAGC
*
36913595 ATCGCAGCAAAGCTGCCAGCAATAGT
1 ATCGCAACAAAGCTGCCAGCAATAGT
*
36913621 ATCGCAACAAAGCTGCCAGTAATAGT
1 ATCGCAACAAAGCTGCCAGCAATAGT
36913647 GTCTGTTGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.17
Consensus pattern (26 bp):
ATCGCAACAAAGCTGCCAGCAATAGT
Found at i:36913666 original size:27 final size:27
Alignment explanation
Indices: 36913636--36913699 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
36913626 AACAAAGCTG
36913636 CCAGTAATAGTG-TCTGTTGCCA-AGCCA
1 CCAGTAATAGTGAT-TG-TGCCAGAGCCA
* *
36913663 CCAGTAACAGTGATTGTGGCAGAGCCA
1 CCAGTAATAGTGATTGTGCCAGAGCCA
36913690 CCAGT-ATAGT
1 CCAGTAATAGT
36913700 ACTTCCTCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
26 8 0.25
27 23 0.72
28 1 0.03
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.23
Consensus pattern (27 bp):
CCAGTAATAGTGATTGTGCCAGAGCCA
Found at i:36914453 original size:27 final size:27
Alignment explanation
Indices: 36913886--36914452 Score: 506
Period size: 27 Copynumber: 21.1 Consensus size: 27
36913876 CCACCAGGGC
*
36913886 ATTATGGTCATTTTACCCTACAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
36913913 ATTATGGTAATTTTACCCTACA-GGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
36913939 ATTACGGTCATTTTACCCTACAGAGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
36913966 ATTAGGGTCATTTTACCCTACAAGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
** * * *
36913993 ATTACTATCATTTTACCCTATAAGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
36914020 ATTACGGTCATTTTATCCTATAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
36914047 ATTACAGTTATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
36914074 ATTACGGTCATTTTACTCTACAGGAGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
36914101 ATTACGGTCATGTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
*
36914128 ATTACGGTCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* * *
36914155 ATTACAGTTATTTTACCCTACAAGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
36914182 ATTACAGTCATTTTACACTACAGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
36914209 ATTACGGTCATTTTACCCTACA-GGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* * **
36914235 ATTACGATCATTTTACCTTATGGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
* * **
36914262 ATTTCGGT-ATTCTACCCTATGGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
** ** *
36914288 ATTTTGGTCATTTTACCCTATGGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGT
* *
36914315 ATTTCAGTCATTTTACCC-ATC-GAGGGT
1 ATTACGGTCATTTTACCCTA-CAG-GGGT
* *
36914342 ATTTCGGTCATTTTACCC-ATC-GAGGGC
1 ATTACGGTCATTTTACCCTA-CAG-GGGT
**
36914369 ATTTTGGTCATTTTACCC-ATC-GAGGGT
1 ATTACGGTCATTTTACCCTA-CAG-GGGT
* * **
36914396 ATTTCGGTCATTTTATCC-ATCAAAGGT
1 ATTACGGTCATTTTACCCTA-CAGGGGT
* * *
36914423 ATTTCGGTCATTTTACCCTTCGGGGGT
1 ATTACGGTCATTTTACCCTACAGGGGT
36914450 ATT
1 ATT
36914453 TAGGTCCAGA
Statistics
Matches: 466, Mismatches: 67, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
26 71 0.15
27 395 0.85
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
ATTACGGTCATTTTACCCTACAGGGGT
Found at i:36921725 original size:17 final size:17
Alignment explanation
Indices: 36921703--36921738 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
36921693 CATATATTTA
36921703 TAGCTTCAAATTAATCT
1 TAGCTTCAAATTAATCT
36921720 TAGCTTCAAATTAATCT
1 TAGCTTCAAATTAATCT
36921737 TA
1 TA
36921739 CCTTGTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.42
Consensus pattern (17 bp):
TAGCTTCAAATTAATCT
Found at i:36922558 original size:18 final size:18
Alignment explanation
Indices: 36922531--36922572 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
36922521 GTAATTTTCC
*
36922531 CTTTTCCTCGATTATTGT
1 CTTTTTCTCGATTATTGT
*
36922549 CTTTTTCTCGATTGTTGT
1 CTTTTTCTCGATTATTGT
36922567 CTTTTT
1 CTTTTT
36922573 GGTTTGGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.07, C:0.19, G:0.12, T:0.62
Consensus pattern (18 bp):
CTTTTTCTCGATTATTGT
Found at i:36924405 original size:25 final size:25
Alignment explanation
Indices: 36924332--36924426 Score: 102
Period size: 25 Copynumber: 3.8 Consensus size: 25
36924322 GGTTACTAAT
*
36924332 TTCAGCTCGTATGAGCTTACCAATA
1 TTCAGCTCGTATGAGCTTACCATTA
* * *
36924357 CTCAGGTCGTATGAGCTTATCATTA
1 TTCAGCTCGTATGAGCTTACCATTA
* *
36924382 TTCAGCTCGGAGGAGCTTACCATT-
1 TTCAGCTCGTATGAGCTTACCATTA
* * *
36924406 TACAACTCGTATGAGCATACC
1 TTCAGCTCGTATGAGCTTACC
36924427 GAGTTTAGTA
Statistics
Matches: 56, Mismatches: 14, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
24 16 0.29
25 40 0.71
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTACCATTA
Found at i:36935103 original size:68 final size:68
Alignment explanation
Indices: 36934994--36935128 Score: 234
Period size: 68 Copynumber: 2.0 Consensus size: 68
36934984 TCCTGAATTA
* *
36934994 TTGTGGGAAAGGTAAAGGTAGAGATAAATTTGCTTGCGTTGACACCTTTGATTGCGTCAAAAGTT
1 TTGTGGGAAAGGTAAAGGTAGAGATAAATCTACTTGCGTTGACACCTTTGATTGCGTCAAAAGTT
36935059 TCT
66 TCT
* *
36935062 TTGTGGGAAAGGTAAAGGTAGAGATACATCTACTTGCGTTGACACCTTTGATTGTGTCAAAAGTT
1 TTGTGGGAAAGGTAAAGGTAGAGATAAATCTACTTGCGTTGACACCTTTGATTGCGTCAAAAGTT
36935127 TC
66 TC
36935129 AAAGGTTAGA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (68 bp):
TTGTGGGAAAGGTAAAGGTAGAGATAAATCTACTTGCGTTGACACCTTTGATTGCGTCAAAAGTT
TCT
Found at i:36939694 original size:13 final size:13
Alignment explanation
Indices: 36939676--36939700 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36939666 AAAAGTTGAA
36939676 AAATACTTAAATC
1 AAATACTTAAATC
36939689 AAATACTTAAAT
1 AAATACTTAAAT
36939701 TCTTCGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (13 bp):
AAATACTTAAATC
Found at i:36951625 original size:21 final size:21
Alignment explanation
Indices: 36951579--36951627 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
36951569 GATATATTGA
*
36951579 GATTTATATTTTGTTATCTAT
1 GATTGATATTTTGTTATCTAT
* *
36951600 G--TGATATTTTTTTATTTAT
1 GATTGATATTTTGTTATCTAT
36951619 GATTGATAT
1 GATTGATAT
36951628 GTTAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 16 0.70
21 7 0.30
ACGTcount: A:0.24, C:0.02, G:0.12, T:0.61
Consensus pattern (21 bp):
GATTGATATTTTGTTATCTAT
Found at i:36956387 original size:25 final size:25
Alignment explanation
Indices: 36956340--36956410 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
36956330 CGAACTGTGA
* *
36956340 ATCAGTATGCTCACTCGATCTGTAG
1 ATCAGTATGCTCACACGAGCTGTAG
* *
36956365 ATCAATATGCTCTCACGAGCTGTAG
1 ATCAGTATGCTCACACGAGCTGTAG
* *
36956390 ATCGGTTTGCTCACACGAGCT
1 ATCAGTATGCTCACACGAGCT
36956411 ATGGGTCGAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (25 bp):
ATCAGTATGCTCACACGAGCTGTAG
Found at i:36959778 original size:20 final size:20
Alignment explanation
Indices: 36959740--36959778 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
36959730 AACATTCAAA
*
36959740 ATACCATATTCACAACCAAG
1 ATACCATATACACAACCAAG
36959760 ATACCATA-ACACAAGCCAA
1 ATACCATATACACAA-CCAA
36959779 ACCATATGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.49, C:0.31, G:0.05, T:0.15
Consensus pattern (20 bp):
ATACCATATACACAACCAAG
Found at i:36962329 original size:27 final size:27
Alignment explanation
Indices: 36962295--36962350 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
36962285 AATTAACTCG
36962295 TAAACATTAAAATAATATTTACGAACT
1 TAAACATTAAAATAATATTTACGAACT
36962322 TAAACATTAAAATAATATTTACGAACT
1 TAAACATTAAAATAATATTTACGAACT
36962349 TA
1 TA
36962351 CTCGTCGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.52, C:0.11, G:0.04, T:0.34
Consensus pattern (27 bp):
TAAACATTAAAATAATATTTACGAACT
Found at i:36962952 original size:14 final size:14
Alignment explanation
Indices: 36962933--36962962 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
36962923 AAGTTTAACA
36962933 TTCGATTTTACTAG
1 TTCGATTTTACTAG
36962947 TTCGATTTTACTAG
1 TTCGATTTTACTAG
36962961 TT
1 TT
36962963 TTGAATGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.53
Consensus pattern (14 bp):
TTCGATTTTACTAG
Found at i:36964361 original size:8 final size:8
Alignment explanation
Indices: 36964348--36964377 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
36964338 TAATGTCACT
36964348 AATTCTGC
1 AATTCTGC
36964356 AATTCTGC
1 AATTCTGC
36964364 AATTCTGC
1 AATTCTGC
36964372 AATTCT
1 AATTCT
36964378 TTCTTGATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (8 bp):
AATTCTGC
Found at i:36966721 original size:24 final size:22
Alignment explanation
Indices: 36966680--36966724 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
36966670 TGTGTATATT
36966680 CTAAAATTATTAGTATTATTAC
1 CTAAAATTATTAGTATTATTAC
*
36966702 CTAAAAGTTATGTTGTATTATTA
1 CTAAAA-TTAT-TAGTATTATTA
36966725 TTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
23 4 0.20
24 10 0.50
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.47
Consensus pattern (22 bp):
CTAAAATTATTAGTATTATTAC
Found at i:36971136 original size:13 final size:13
Alignment explanation
Indices: 36971101--36971129 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
36971091 ATCCTTTAAA
36971101 AAAAATC-AAATC
1 AAAAATCAAAATC
36971113 AAAAATCAAAATC
1 AAAAATCAAAATC
36971126 AAAA
1 AAAA
36971130 TATAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.72, C:0.14, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAAATCAAAATC
Found at i:36972068 original size:6 final size:7
Alignment explanation
Indices: 36972056--36972096 Score: 75
Period size: 7 Copynumber: 6.0 Consensus size: 7
36972046 AAAAAGGGGG
36972056 TGAAAAA
1 TGAAAAA
36972063 TGAAAAA
1 TGAAAAA
36972070 TGAAAAA
1 TGAAAAA
36972077 TGAAAAA
1 TGAAAAA
36972084 TG-AAAA
1 TGAAAAA
36972090 TGAAAAA
1 TGAAAAA
36972097 GTAAAATGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.18
7 27 0.82
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
TGAAAAA
Found at i:36972102 original size:13 final size:13
Alignment explanation
Indices: 36972059--36972104 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
36972049 AAGGGGGTGA
*
36972059 AAAATGAAAAATGA
1 AAAATGAAAAA-GT
36972073 AAAATGAAAAA-T
1 AAAATGAAAAAGT
36972085 GAAAATGAAAAAGT
1 -AAAATGAAAAAGT
36972099 AAAATG
1 AAAATG
36972105 GAGAGGCTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAAAGT
Found at i:36972636 original size:43 final size:43
Alignment explanation
Indices: 36972592--36972819 Score: 323
Period size: 43 Copynumber: 5.3 Consensus size: 43
36972582 TTTTAGAAAA
* * * *
36972592 AAACGCCGCTAAAGACTAAGACCTTTAGCGGTGC-TTTCCCAA
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCAC
** * * *
36972634 AAATACCGGTAAAGATCAGGACCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCAC
36972677 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCAC
** *
36972720 AAACATCGCTAAAGACCAGGACCATTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCAC
*
36972763 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTACCAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGC-TTTTCCCAC
36972807 AAACGCCGCTAAA
1 AAACGCCGCTAAA
36972820 AACATGACTT
Statistics
Matches: 163, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
42 27 0.17
43 115 0.71
44 21 0.13
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.20
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCAC
Found at i:36973041 original size:18 final size:18
Alignment explanation
Indices: 36973018--36973077 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
36973008 TTAAAACAAG
36973018 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
*** * *
36973036 TTACATAAGAAAATT-G-T
1 TTACAT-TCTATATTAGAA
36973053 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
36973071 TTACATT
1 TTACATT
36973078 AGAATTACAT
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 4 0.14
17 7 0.24
18 14 0.48
19 4 0.14
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (18 bp):
TTACATTCTATATTAGAA
Found at i:36977771 original size:41 final size:41
Alignment explanation
Indices: 36977726--36978000 Score: 390
Period size: 41 Copynumber: 6.7 Consensus size: 41
36977716 AATATTTTTT
* * *
36977726 GCGGCGCTTTTTTAAAAACGCCGCTAAAGACCCGAGAATTA
1 GCGGCGCTTATTCAAAAACGCCGCTAAAGACCCGAGCATTA
* * * * *
36977767 GCGGCGCTTTTTAAAAAACACCGCTAAAGACCAGATCATTA
1 GCGGCGCTTATTCAAAAACGCCGCTAAAGACCCGAGCATTA
* *
36977808 GCGGCGCTTCTTCAAAAACACCGCTAAAGACCCGAGCATTA
1 GCGGCGCTTATTCAAAAACGCCGCTAAAGACCCGAGCATTA
*
36977849 GCGGCGCTTATTCAAAAACGCCGCTAAAGACCTGAGCATTA
1 GCGGCGCTTATTCAAAAACGCCGCTAAAGACCCGAGCATTA
*
36977890 GCGGCGCTTATTCAAAAGCGCCGCTAAAGACCCGAGCATTA
1 GCGGCGCTTATTCAAAAACGCCGCTAAAGACCCGAGCATTA
* * *
36977931 GCGGCGCTTATTCAAAAGCGCCGCTAAAGACCCGAGAATTG
1 GCGGCGCTTATTCAAAAACGCCGCTAAAGACCCGAGCATTA
*
36977972 GCGGCGCTTCA-TCAAAAACGTCGCTAAAG
1 GCGGCGCTT-ATTCAAAAACGCCGCTAAAG
36978001 CCTCAAAACT
Statistics
Matches: 215, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
41 214 1.00
42 1 0.00
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (41 bp):
GCGGCGCTTATTCAAAAACGCCGCTAAAGACCCGAGCATTA
Done.