Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60982465
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 868082 characters in sequence are not A, C, G, or T
File 121 of 204
Found at i:36978140 original size:40 final size:40
Alignment explanation
Indices: 36978056--36978171 Score: 137
Period size: 40 Copynumber: 3.0 Consensus size: 40
36978046 GCACTTTTTG
*
36978056 TAAAA-CGCCGCTAATGCTC-ATTTTTAGCGGTGTTTACC
1 TAAAAGCGCCGCTAATGCTCGATTTTTAGCGGTGTTTTCC
* * * *
36978094 TGAAAGCGCCGCTAATACTCGATCTTTAGCGGTGTTTTCT
1 TAAAAGCGCCGCTAATGCTCGATTTTTAGCGGTGTTTTCC
* * * *
36978134 TAAAAGCGTCGGTAATGCTTGATTTTTAGCGGCGTTTT
1 TAAAAGCGCCGCTAATGCTCGATTTTTAGCGGTGTTTT
36978172 TTATCCAAAC
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 4 0.06
39 13 0.20
40 47 0.73
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (40 bp):
TAAAAGCGCCGCTAATGCTCGATTTTTAGCGGTGTTTTCC
Found at i:36979558 original size:128 final size:128
Alignment explanation
Indices: 36979112--36979567 Score: 743
Period size: 128 Copynumber: 3.6 Consensus size: 128
36979102 AGTAGGGAAA
* * *
36979112 CAGATCGAAGACGGCGAAACTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCTACAAGTCCTATG
1 CAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATG
* * *
36979177 TCCCAGACCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCAGAG
66 TCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCCCTAAGCAGTAGCGGAG
*
36979240 CAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATG
1 CAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATG
*
36979305 TCCCTAACCAGCAGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCCCTAAGCAGTAGCGGAG
66 TCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCCCTAAGCAGTAGCGGAG
*
36979368 CAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAAATTTAAGCCACAAGTCCTATG
1 CAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATG
* * *
36979433 TCCCTGGCCAGCAGTGGAATAAGTTGGAAATTGCAGATCTTGTCTCCCTAAGTAGTAGCGGAG
66 TCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCCCTAAGCAGTAGCGGAG
* * * *
36979496 CAGATCGAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGTAGATTGAAGCCGATAA-TCCTAT
1 CAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCC-ACAAGTCCTAT
*
36979560 CTCCCTGA
65 GTCCCTGA
36979568 AGTTGTAGTG
Statistics
Matches: 306, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
128 303 0.99
129 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (128 bp):
CAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATG
TCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCCCTAAGCAGTAGCGGAG
Found at i:36979750 original size:44 final size:44
Alignment explanation
Indices: 36979538--36980018 Score: 222
Period size: 44 Copynumber: 11.1 Consensus size: 44
36979528 GTAAGGAAGT
* * *
36979538 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGA-C
1 AGATTGAAGACGATAATCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * * *
36979581 GGATTAAAGTA--ATAGATCTTATCTCTCTG-AGTTACAGTAGAGT
1 AGATTGAAG-ACGATA-ATCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * ** * * * *
36979624 GGATCGCAG-C-A-GGTCTTACCCCCCTGAAGTTACAGTGGGGC
1 AGATTGAAGACGATAATCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * *
36979665 AGATCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTGGAGC
1 AGATTGAAGACGA-TAATCTTATCTCCCTGAAGTTGCAGTGGAGC
* * *
36979710 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGC
1 AGATTGAAGACGATAATCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * *
36979754 GGATTAAAGTA--ATAGATCTTATCTCTCTGAAGTTGCAGTAGAGT
1 AGATTGAAG-ACGATA-ATCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * ** *
36979798 GGATCGCA-TC-A-GGTCTTATATCCCTGAAGTTGCAGTGGAGC
1 AGATTGAAGACGATAATCTTATCTCCCTGAAGTTGCAGTGGAGC
* ** * * ** *
36979839 AGACTG-AGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGC
1 AGATTGAAGACGATAA-TCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * *
36979883 AGACTGAAAAAGCA-AATCTTATCTCCCT-AAGATTGCAGTGGAGA
1 AGATTGAAGACG-ATAATCTTATCTCCCTGAAG-TTGCAGTGGAGC
* * * * *
36979927 AGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGAAGT
1 AGATTGAAGACGATAATCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * *
36979971 GGATTAAAGTA--ATAGATCTTATCTCTCTGAAGTAGCAGTAGAGC
1 AGATTGAAG-ACGATA-ATCTTATCTCCCTGAAGTTGCAGTGGAGC
36980015 AGAT
1 AGAT
36980019 CGCATCAGGT
Statistics
Matches: 324, Mismatches: 91, Indels: 45
0.70 0.20 0.10
Matches are distributed among these distances:
40 11 0.03
41 45 0.14
42 14 0.04
43 37 0.11
44 173 0.53
45 43 0.13
46 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
AGATTGAAGACGATAATCTTATCTCCCTGAAGTTGCAGTGGAGC
Found at i:36979869 original size:173 final size:172
Alignment explanation
Indices: 36979538--36979890 Score: 539
Period size: 173 Copynumber: 2.0 Consensus size: 172
36979528 GTAAGGAAGT
36979538 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGACGGATTAAAGTAATAGATCTTAT
1 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGACGGATTAAAGTAATAGATCTTAT
* *
36979603 CTCTCTGAGTTACAGTAGAGTGGATCGCAGCAGGTCTTACCCCCCTGAAGTTACAGTGGGGCAGA
66 CTCTCTGAGTTACAGTAGAGTGGATCGCAGCAGGTCTTACACCCCTGAAGTTACAGTGGAGCAGA
** * *
36979668 TCGAAGATGACAAATCTTATCTCCCTGAAGTTACAGTGGAGC
131 TCGAAGAAAACAAATCTTATCCCCCTGAAGTCACAGTGGAGC
36979710 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTA
1 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGA-CGGATTAAAGTAATAGATCTTA
* * * * *
36979775 TCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATATCCCTGAAGTTGCAGTGGAGCA
65 TCTCTCTG-AGTTACAGTAGAGTGGATCGCAGCAGGTCTTACACCCCTGAAGTTACAGTGGAGCA
* *
36979840 GA-CTG-AGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGC
129 GATC-GAAGAAAACAAATCTTATCCCCCTGAAGTCACAGTGGAGC
*
36979883 AGACTGAA
1 AGATTGAA
36979891 AAAGCAAATC
Statistics
Matches: 164, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
172 42 0.26
173 70 0.43
174 52 0.32
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (172 bp):
AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGACGGATTAAAGTAATAGATCTTAT
CTCTCTGAGTTACAGTAGAGTGGATCGCAGCAGGTCTTACACCCCTGAAGTTACAGTGGAGCAGA
TCGAAGAAAACAAATCTTATCCCCCTGAAGTCACAGTGGAGC
Found at i:36979908 original size:173 final size:174
Alignment explanation
Indices: 36979549--36979974 Score: 517
Period size: 173 Copynumber: 2.5 Consensus size: 174
36979539 GATTGAAGCC
36979549 GATAATCCTATCTCCCTGAAGTTGTAGTGGA-CGGATTAAAGTAATAGATCTTATCTCTCTG-AG
1 GATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAG
* * * **
36979612 TTACAGTAGAGTGGATCGCAGCAGGTCTTACCCCCCTGAAGTTACAGTGGGGCAGATCGAAGATG
66 TTGCAGTAGAGTGGATCGCAGCAGGTCTTACACCCCTGAAGTTACAGTGGAGCAGATCGAAGAAA
* * * ***
36979677 ACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCC
131 ACAAATCTTATCCCCCTGAAGTCACAGTGGAGCAGACTGAAAAA
36979721 GATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAG
1 GATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAG
* * * *
36979786 TTGCAGTAGAGTGGATCGCATCAGGTCTTATATCCCTGAAGTTGCAGTGGAGCAGA-CTG-AGAA
66 TTGCAGTAGAGTGGATCGCAGCAGGTCTTACACCCCTGAAGTTACAGTGGAGCAGATC-GAAGAA
* *
36979849 AACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACTGAAAAA
130 AACAAATCTTATCCCCCTGAAGTCACAGTGGAGCAGACTGAAAAA
* * ** * * * *
36979894 GCA-AATCTTATCTCCCT-AAGATTGCAGTGGAGAAGATTGAAGTCGATA-ATCCTATCTCCCTG
1 G-ATAATCCTATCTCCCTGAAG-TTGTAGTGGAGCGGATTAAAGT-AATAGATCTTATCTCTCTG
*
36979956 AAGTTGTAGT-GAAGTGGAT
63 AAGTTGCAGTAG-AGTGGAT
36979975 TAAAGTAATA
Statistics
Matches: 221, Mismatches: 26, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
172 35 0.16
173 130 0.59
174 56 0.25
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (174 bp):
GATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAG
TTGCAGTAGAGTGGATCGCAGCAGGTCTTACACCCCTGAAGTTACAGTGGAGCAGATCGAAGAAA
ACAAATCTTATCCCCCTGAAGTCACAGTGGAGCAGACTGAAAAA
Found at i:36979925 original size:217 final size:218
Alignment explanation
Indices: 36979636--36980031 Score: 645
Period size: 217 Copynumber: 1.8 Consensus size: 218
36979626 ATCGCAGCAG
* * *
36979636 GTCTTACCCCCCTGAAGTTACAGTGGGGCAGATCGAAGATGACAAATCTTATCTCCCTGAAGTTA
1 GTCTTACCCCCCTGAAGTCACAGTGGGGCAGATCGAAAAAGACAAATCTTATCTCCCTGAAGTTA
* *
36979701 CAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAA
66 CAGTGGAGAAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGAAGCGGATTAAAGTAA
* **
36979766 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATATCCCTGAAGTTGC
131 TAGATCTTATCTCTCTGAAGTAGCAGTAGAGCAGATCGCATCAGGTCTTATATCCCTGAAGTTGC
36979831 AGTGGAGCAGACTGAGAAAACAA
196 AGTGGAGCAGACTGAGAAAACAA
*
36979854 GTCTTATCCCCCTGAAGTCACAGTGGGGCAGA-CTGAAAAAG-CAAATCTTATCTCCCT-AAGAT
1 GTCTTACCCCCCTGAAGTCACAGTGGGGCAGATC-GAAAAAGACAAATCTTATCTCCCTGAAG-T
* * *
36979916 TGCAGTGGAGAAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGAAGTGGATTAAAGT
64 TACAGTGGAGAAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGAAGCGGATTAAAGT
36979981 AATAGATCTTATCTCTCTGAAGTAGCAGTAGAGCAGATCGCATCAGGTCTT
129 AATAGATCTTATCTCTCTGAAGTAGCAGTAGAGCAGATCGCATCAGGTCTT
36980032 GCTGACTAGA
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
216 3 0.02
217 126 0.77
218 35 0.21
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (218 bp):
GTCTTACCCCCCTGAAGTCACAGTGGGGCAGATCGAAAAAGACAAATCTTATCTCCCTGAAGTTA
CAGTGGAGAAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGAAGCGGATTAAAGTAA
TAGATCTTATCTCTCTGAAGTAGCAGTAGAGCAGATCGCATCAGGTCTTATATCCCTGAAGTTGC
AGTGGAGCAGACTGAGAAAACAA
Found at i:36981778 original size:24 final size:24
Alignment explanation
Indices: 36981746--36981815 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 24
36981736 TTCATATTTT
*
36981746 TAAAGTTATTGTGTATTATTATTC
1 TAAAATTATTGTGTATTATTATTC
* *
36981770 TAAAATTATT-AGTATTATTA-CC
1 TAAAATTATTGTGTATTATTATTC
36981792 TAAAAGTTA-TGTTGTATTATTATT
1 TAAAA-TTATTG-TGTATTATTATT
36981816 TTTTTATTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
22 7 0.19
23 12 0.32
24 18 0.49
ACGTcount: A:0.34, C:0.04, G:0.10, T:0.51
Consensus pattern (24 bp):
TAAAATTATTGTGTATTATTATTC
Found at i:36981788 original size:23 final size:25
Alignment explanation
Indices: 36981747--36981815 Score: 83
Period size: 23 Copynumber: 2.9 Consensus size: 25
36981737 TCATATTTTT
36981747 AAAGTTATTGT-GTATTATTATTCTA
1 AAAGTTA-TGTAGTATTATTATTCTA
*
36981772 AAA-TTAT-TAGTATTATTA-CCTA
1 AAAGTTATGTAGTATTATTATTCTA
*
36981794 AAAGTTATGTTGTATTATTATT
1 AAAGTTATGTAGTATTATTATT
36981816 TTTTTATTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
22 7 0.19
23 14 0.38
24 13 0.35
25 3 0.08
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (25 bp):
AAAGTTATGTAGTATTATTATTCTA
Found at i:36983703 original size:12 final size:12
Alignment explanation
Indices: 36983688--36983721 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
36983678 TTGGGGAGGA
*
36983688 TTTTGATTTTCT
1 TTTTCATTTTCT
*
36983700 TTTTCTTTTTCT
1 TTTTCATTTTCT
36983712 TTTTCATTTT
1 TTTTCATTTT
36983722 TTTCTTTTCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.12, G:0.03, T:0.79
Consensus pattern (12 bp):
TTTTCATTTTCT
Found at i:36984724 original size:22 final size:22
Alignment explanation
Indices: 36984680--36984738 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
36984670 ATGAATGTTG
*
36984680 TTTAAATTTATCACATATTATTAT
1 TTTAAATTTAT--CATATAATTAT
36984704 TTTAAATTTATCATATAATTAT
1 TTTAAATTTATCATATAATTAT
*
36984726 TTTAAGTTT-TCAT
1 TTTAAATTTATCAT
36984739 GTATCATTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 4 0.12
22 18 0.55
24 11 0.33
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTAAATTTATCATATAATTAT
Found at i:36987159 original size:2 final size:2
Alignment explanation
Indices: 36987152--36987190 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
36987142 AGTGCGCTGT
36987152 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36987191 TGTTGTCCAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:36990555 original size:22 final size:22
Alignment explanation
Indices: 36990530--36990575 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
36990520 TTACAATAAA
36990530 CACATTAAAATAACTTATTAAG
1 CACATTAAAATAACTTATTAAG
36990552 CACATTAAAATAACTTATTAAG
1 CACATTAAAATAACTTATTAAG
36990574 CA
1 CA
36990576 TATTTAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.50, C:0.15, G:0.04, T:0.30
Consensus pattern (22 bp):
CACATTAAAATAACTTATTAAG
Found at i:36995304 original size:18 final size:18
Alignment explanation
Indices: 36995283--36995324 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
36995273 ATATAATAAA
*
36995283 ACATTACAATTTAATGCT
1 ACATTACAATTTAATACT
*
36995301 ACATTATAATTTAATACT
1 ACATTACAATTTAATACT
36995319 ACATTA
1 ACATTA
36995325 AAATATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.40
Consensus pattern (18 bp):
ACATTACAATTTAATACT
Found at i:36998406 original size:21 final size:21
Alignment explanation
Indices: 36998381--36998420 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
36998371 TCTTTTATAA
36998381 TTTTTCTATATTAATTTTGGT
1 TTTTTCTATATTAATTTTGGT
* *
36998402 TTTTTCTATTTTGATTTTG
1 TTTTTCTATATTAATTTTG
36998421 TTGGACTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.10, T:0.70
Consensus pattern (21 bp):
TTTTTCTATATTAATTTTGGT
Found at i:36999506 original size:383 final size:383
Alignment explanation
Indices: 36998794--36999515 Score: 1066
Period size: 383 Copynumber: 1.9 Consensus size: 383
36998784 TAGTGTTACA
* * *
36998794 AACATAAATTGTTATCAAAATCATTTACTTGTCATCTCGTTGTGTAATAAGAACTTTTCATCAGA
1 AACAGAAATTGTTATCAAAATCATTTACTTGTCATCTCATTGTGTAACAAGAACTTTTCATCAGA
* * *
36998859 ATTTGCTCACCATAACTTTTTATTTTATCATTATCTTTGATTATTCAATAGAGGCCCAATGTAGA
66 AGTTGCTCACCATAACTTTTTATTTTATCATTATATTTGATTATTCAACAGAGGCCCAATGTAGA
** * * ** *
36998924 CTTATTAGAATGCATAGGATATACGAAAACTATACAGTAATGCACTGAAGTGAAAATAAAAAATA
131 CTTAACAGAATGCATAAGATATACGAAAACAATACAGTAATGCACCAAAGTGAAAATAAAAAACA
* * * *
36998989 GGACAACATTGATATACGTATTCTGAACAAGACATGACAACACCGAAATGTGTATACAAAACAGA
196 AGACAACATCGATATACGTATTCAGAACAAGACATGACAACACCGAAATGCGTATACAAAACAGA
* *
36999054 GAGCACGCTAAATTTTCCTTAATGGCATGCCATCTATATCCTACGAGTTCTAATCTCGTCTACTT
261 GAGCACGCTAAATTTTCCATAATGGCATGCCATCTATATCCTACGAGTTCTAATCTCGACTACTT
*
36999119 GGGCAATTGTATAAAAACTTTTATAAGTATAATTCACTACATTATCACTTCACAATTT
326 GGGCAATTATATAAAAACTTTTATAAGTATAATTCACTACATTATCACTTCACAATTT
*
36999177 AACAGAAATTGTTATCAAAATCCTTTACTTGTCATCTCATTGTGTAACAAGAACTTTTCATCAGA
1 AACAGAAATTGTTATCAAAATCATTTACTTGTCATCTCATTGTGTAACAAGAACTTTTCATCAGA
* * * *
36999242 AGTTGCTCACCGTAACTTTTTATTTTATCATTGTATTTTATTATTCAGCAGAGGCCCAATGTAGA
66 AGTTGCTCACCATAACTTTTTATTTTATCATTATATTTGATTATTCAACAGAGGCCCAATGTAGA
* * * * *
36999307 CTTAACAGAATGCATAATATATACGAAAACAATATAGTAATGCACCAAAGTGCAAATATAGAACA
131 CTTAACAGAATGCATAAGATATACGAAAACAATACAGTAATGCACCAAAGTGAAAATAAAAAACA
* ** * * * *
36999372 AGACAACATCGATGTGTGTATTGAGAACAAGACATGACAACACCGAAGTGCGTATTCAAAATAGA
196 AGACAACATCGATATACGTATTCAGAACAAGACATGACAACACCGAAATGCGTATACAAAACAGA
* ** *
36999437 GAGCAGGCTAAATTTTCCATAATGGCATGCCATCTATATCCTATTAGTTCTCATCTCGACTACTT
261 GAGCACGCTAAATTTTCCATAATGGCATGCCATCTATATCCTACGAGTTCTAATCTCGACTACTT
*
36999502 GGGCAGTTATATAA
326 GGGCAATTATATAA
36999516 GAATCAATTT
Statistics
Matches: 297, Mismatches: 42, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
383 297 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (383 bp):
AACAGAAATTGTTATCAAAATCATTTACTTGTCATCTCATTGTGTAACAAGAACTTTTCATCAGA
AGTTGCTCACCATAACTTTTTATTTTATCATTATATTTGATTATTCAACAGAGGCCCAATGTAGA
CTTAACAGAATGCATAAGATATACGAAAACAATACAGTAATGCACCAAAGTGAAAATAAAAAACA
AGACAACATCGATATACGTATTCAGAACAAGACATGACAACACCGAAATGCGTATACAAAACAGA
GAGCACGCTAAATTTTCCATAATGGCATGCCATCTATATCCTACGAGTTCTAATCTCGACTACTT
GGGCAATTATATAAAAACTTTTATAAGTATAATTCACTACATTATCACTTCACAATTT
Found at i:37009865 original size:27 final size:27
Alignment explanation
Indices: 37009835--37010128 Score: 329
Period size: 27 Copynumber: 10.9 Consensus size: 27
37009825 GCAAATGATA
**
37009835 GAATTACCCCTAAAGGGTAAAATGACC
1 GAATTACCCCCGAAGGGTAAAATGACC
* * * *
37009862 GAATTATCCTCGAAGGGTAAAGTGACT
1 GAATTACCCCCGAAGGGTAAAATGACC
* *
37009889 GAATTACCCCCTAAGGGTAAAGTGACC
1 GAATTACCCCCGAAGGGTAAAATGACC
37009916 GAATTACCCCCGAAGGGTAAAATGACC
1 GAATTACCCCCGAAGGGTAAAATGACC
* *
37009943 GAATTACCCCCGAAGGGTAAAGTGACT
1 GAATTACCCCCGAAGGGTAAAATGACC
* * * * *
37009970 GAATTAACCTCTAAGGGTAAAGTGACT
1 GAATTACCCCCGAAGGGTAAAATGACC
*
37009997 GAATTACCCCCGAAGGGTAAAATGACA
1 GAATTACCCCCGAAGGGTAAAATGACC
* * * * **
37010024 AAATTACCCCCGAAAGGTAAAGTCATT
1 GAATTACCCCCGAAGGGTAAAATGACC
*
37010051 GAATTACCCCCGAAGGGTAAAATGACA
1 GAATTACCCCCGAAGGGTAAAATGACC
* *
37010078 AAATTACCCTCGAAGGGTAAAATGACC
1 GAATTACCCCCGAAGGGTAAAATGACC
* *
37010105 GAAATACCCCC-ATACGGTAAAATG
1 GAATTACCCCCGA-AGGGTAAAATG
37010129 GCTGTTATAC
Statistics
Matches: 225, Mismatches: 41, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 1 0.00
27 224 1.00
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (27 bp):
GAATTACCCCCGAAGGGTAAAATGACC
Found at i:37009970 original size:81 final size:81
Alignment explanation
Indices: 37009834--37010115 Score: 402
Period size: 81 Copynumber: 3.5 Consensus size: 81
37009824 GGCAAATGAT
** * *
37009834 AGAATTACCCCTAAAGGGTAAAATGACCGAATTATCCTCGAAGGGTAAAGTGACTGAATTACCCC
1 AGAATTACCCCCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTAAAGTGACTGAATTACCCC
37009899 CTAAGGGTAAAGTGAC
66 CTAAGGGTAAAGTGAC
* * *
37009915 CGAATTACCCCCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTAAAGTGACTGAATTAACCT
1 AGAATTACCCCCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTAAAGTGACTGAATTACCCC
37009980 CTAAGGGTAAAGTGAC
66 CTAAGGGTAAAGTGAC
* ** * * *
37009996 TGAATTACCCCCGAAGGGTAAAATGACAAAATTACCCCCGAAAGGTAAAGTCATTGAATTACCCC
1 AGAATTACCCCCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTAAAGTGACTGAATTACCCC
* *
37010061 CGAAGGGTAAAATGAC
66 CTAAGGGTAAAGTGAC
* * *
37010077 AAAATTACCCTCGAAGGGTAAAATGACCGAAATACCCCC
1 AGAATTACCCCCGAAGGGTAAAATGACCGAATTACCCCC
37010116 ATACGGTAAA
Statistics
Matches: 178, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 178 1.00
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (81 bp):
AGAATTACCCCCGAAGGGTAAAATGACCGAATTACCCCCGAAGGGTAAAGTGACTGAATTACCCC
CTAAGGGTAAAGTGAC
Found at i:37010533 original size:28 final size:28
Alignment explanation
Indices: 37010493--37010553 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
37010483 ATTGTATTGA
*
37010493 TTACTGTATTGGGCTAAGGCCCACACTG
1 TTACTGTAATGGGCTAAGGCCCACACTG
37010521 TTACTGTAATGGGCTAAGGCCCACACTG
1 TTACTGTAATGGGCTAAGGCCCACACTG
37010549 -TACTG
1 TTACTG
37010554 ATACTGTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 5 0.16
28 27 0.84
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (28 bp):
TTACTGTAATGGGCTAAGGCCCACACTG
Found at i:37012153 original size:26 final size:27
Alignment explanation
Indices: 37012127--37012241 Score: 119
Period size: 27 Copynumber: 4.3 Consensus size: 27
37012117 AATCATTGGT
37012127 AAATGACCAAATTACCCTCGAAGGGTA
1 AAATGACCAAATTACCCTCGAAGGGTA
* *
37012154 AAATGATCGAAA-TACCCTCGATGGGTA
1 AAATGA-CCAAATTACCCTCGAAGGGTA
** *
37012181 AAATGACTGAATTACCCTCAAAGGGTA
1 AAATGACCAAATTACCCTCGAAGGGTA
* *
37012208 AAATGATCGAAA-TACCC-CCATAGGGTA
1 AAATGA-CCAAATTACCCTCGA-AGGGTA
37012235 AAATGAC
1 AAATGAC
37012242 TATGATACCC
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
26 6 0.08
27 62 0.83
28 7 0.09
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (27 bp):
AAATGACCAAATTACCCTCGAAGGGTA
Found at i:37012169 original size:27 final size:27
Alignment explanation
Indices: 37012139--37012240 Score: 136
Period size: 27 Copynumber: 3.8 Consensus size: 27
37012129 ATGACCAAAT
37012139 TACCCTCGAAGGGTAAAATGATCGAAA
1 TACCCTCGAAGGGTAAAATGATCGAAA
* *
37012166 TACCCTCGATGGGTAAAATGA-CTGAAT
1 TACCCTCGAAGGGTAAAATGATC-GAAA
*
37012193 TACCCTCAAAGGGTAAAATGATCGAAA
1 TACCCTCGAAGGGTAAAATGATCGAAA
*
37012220 TACCC-CCATAGGGTAAAATGA
1 TACCCTCGA-AGGGTAAAATGA
37012241 CTATGATACC
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.05
27 62 0.94
28 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.21
Consensus pattern (27 bp):
TACCCTCGAAGGGTAAAATGATCGAAA
Found at i:37012194 original size:54 final size:54
Alignment explanation
Indices: 37012127--37012243 Score: 182
Period size: 54 Copynumber: 2.2 Consensus size: 54
37012117 AATCATTGGT
* * *
37012127 AAATGACCAAATTACCCTCGAAGGGTAAAATGATCGAAATACCCTCGAT-GGGTA
1 AAATGACTAAATTACCCTCAAAGGGTAAAATGATCGAAATACCC-CCATAGGGTA
*
37012181 AAATGACTGAATTACCCTCAAAGGGTAAAATGATCGAAATACCCCCATAGGGTA
1 AAATGACTAAATTACCCTCAAAGGGTAAAATGATCGAAATACCCCCATAGGGTA
37012235 AAATGACTA
1 AAATGACTA
37012244 TGATACCCTT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 3 0.05
54 54 0.95
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.21
Consensus pattern (54 bp):
AAATGACTAAATTACCCTCAAAGGGTAAAATGATCGAAATACCCCCATAGGGTA
Found at i:37012249 original size:27 final size:26
Alignment explanation
Indices: 37012176--37012251 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 26
37012166 TACCCTCGAT
*
37012176 GGGTAAAATGAC-TGAATTACCCTCAAA
1 GGGTAAAATGACATG-A-TACCCCCAAA
* *
37012203 GGGTAAAATGATCGA-AATACCCCCATA
1 GGGTAAAATGA-C-ATGATACCCCCAAA
37012230 GGGTAAAATGACTATGATACCC
1 GGGTAAAATGAC-ATGATACCC
37012252 TTAGGAGTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
26 2 0.05
27 36 0.90
28 2 0.05
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (26 bp):
GGGTAAAATGACATGATACCCCCAAA
Found at i:37012453 original size:26 final size:26
Alignment explanation
Indices: 37012404--37012490 Score: 93
Period size: 26 Copynumber: 3.3 Consensus size: 26
37012394 TGTACTGGTG
* *
37012404 GCTTTGCAACATATACTGTTACTGGCA
1 GCTTTGCTACAT-TACTATTACTGGCA
* * *
37012431 CCTTTGCTATATTACTATTACTGGTA
1 GCTTTGCTACATTACTATTACTGGCA
* * *
37012457 GCTTTGTTGCATCACTATTACTGGCA
1 GCTTTGCTACATTACTATTACTGGCA
37012483 GCTTTGCT
1 GCTTTGCT
37012491 GCAATATTGG
Statistics
Matches: 48, Mismatches: 12, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
26 39 0.81
27 9 0.19
ACGTcount: A:0.21, C:0.22, G:0.17, T:0.40
Consensus pattern (26 bp):
GCTTTGCTACATTACTATTACTGGCA
Found at i:37012636 original size:28 final size:29
Alignment explanation
Indices: 37012599--37012656 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
37012589 ACTGCATTGT
* *
37012599 ATTGATTACTCTATTATGCTAAGGCCCAC
1 ATTGATTACTCTAATAGGCTAAGGCCCAC
* *
37012628 ATTG-TTACTGTAATGGGCTAAGGCCCAC
1 ATTGATTACTCTAATAGGCTAAGGCCCAC
37012656 A
1 A
37012657 CTATACTGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 21 0.84
29 4 0.16
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (29 bp):
ATTGATTACTCTAATAGGCTAAGGCCCAC
Found at i:37014306 original size:27 final size:27
Alignment explanation
Indices: 37014243--37014519 Score: 147
Period size: 27 Copynumber: 10.3 Consensus size: 27
37014233 AAATAACAGG
* * * * *
37014243 AAAATGAACAAATTACTCCTGAAAGGT
1 AAAATGACCGAATTACCCCCGAGAGGT
* *
37014270 AGAATCACCGAATTACCCCCGTAGAGG-
1 AAAATGACCGAATTACCCCCG-AGAGGT
* *
37014297 AAAATGACCGAATTATCCCTGA-AGGGT
1 AAAATGACCGAATTACCCCCGAGA-GGT
* *
37014324 AAAATGACCAAATTA-CCCCGAAAGGT
1 AAAATGACCGAATTACCCCCGAGAGGT
*
37014350 AAAATGACCGAATTA-CCCCTAGAGGGT
1 AAAATGACCGAATTACCCCCGAGA-GGT
* ** *
37014377 AAAGTGATTGAATTACCGCCGA-AGGGT
1 AAAATGACCGAATTACCCCCGAGA-GGT
* * * **
37014404 AAAGTGACCGGATTACACTTGA-AGGGT
1 AAAATGACCGAATTACCCCCGAGA-GGT
* * * *
37014431 AGAATGATCGAATTACCCCCAAAAGGT
1 AAAATGACCGAATTACCCCCGAGAGGT
** * *
37014458 AAAATGACTAAATTACCCTC-AAAGGGT
1 AAAATGACCGAATTACCCCCGAGA-GGT
* * *
37014485 AAAATGACCGAAATACCCTC-ATAGGGT
1 AAAATGACCGAATTACCCCCGAGA-GGT
37014512 AAAATGAC
1 AAAATGAC
37014520 TGTTATACCC
Statistics
Matches: 197, Mismatches: 45, Indels: 16
0.76 0.17 0.06
Matches are distributed among these distances:
25 1 0.01
26 34 0.17
27 153 0.78
28 9 0.05
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (27 bp):
AAAATGACCGAATTACCCCCGAGAGGT
Found at i:37014338 original size:54 final size:54
Alignment explanation
Indices: 37014243--37014519 Score: 237
Period size: 54 Copynumber: 5.1 Consensus size: 54
37014233 AAATAACAGG
* * * * * *
37014243 AAAATGAACAAATTACTCCTGAAAGGTAGAATCACCGAATTACCCCCGTAGAGG-
1 AAAATGACCGAATTAC-CCTGAAGGGTAAAATGACCGAATTACCCCCGAAGAGGT
*
37014297 AAAATGACCGAATTATCCCTGAAGGGTAAAATGACCAAATTA-CCCCGAA-AGGT
1 AAAATGACCGAATTA-CCCTGAAGGGTAAAATGACCGAATTACCCCCGAAGAGGT
* ** *
37014350 AAAATGACCGAATTACCCCT-AGAGGGTAAAGTGATTGAATTACCGCCGAAG-GGT
1 AAAATGACCGAATTA-CCCTGA-AGGGTAAAATGACCGAATTACCCCCGAAGAGGT
* * * * * *
37014404 AAAGTGACCGGATTACACTTGAAGGGTAGAATGATCGAATTACCCCC-AAAAGGT
1 AAAATGACCGAATTAC-CCTGAAGGGTAAAATGACCGAATTACCCCCGAAGAGGT
** * * *
37014458 AAAATGACTAAATTACCCTCAAAGGGTAAAATGACCGAAATACCCTC-ATAG-GGT
1 AAAATGACCGAATTACCCT-GAAGGGTAAAATGACCGAATTACCCCCGA-AGAGGT
37014512 AAAATGAC
1 AAAATGAC
37014520 TGTTATACCC
Statistics
Matches: 181, Mismatches: 32, Indels: 20
0.78 0.14 0.09
Matches are distributed among these distances:
52 4 0.02
53 46 0.25
54 128 0.71
55 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (54 bp):
AAAATGACCGAATTACCCTGAAGGGTAAAATGACCGAATTACCCCCGAAGAGGT
Found at i:37014511 original size:81 final size:80
Alignment explanation
Indices: 37014267--37014519 Score: 228
Period size: 81 Copynumber: 3.1 Consensus size: 80
37014257 ACTCCTGAAA
* * * * *
37014267 GGTAGAATCACCGAATTACCCCCGTAGAGG-AAAATGACCGAATTATCCCT-GAAGGGTAAAATG
1 GGTAAAATGACCGAATTACCCCC-AAAAGGTAAAATGACTGAATTA-CCCTCGAAGGGTAAAATG
*
37014330 ACC-AAATTACCC-CGAAA
64 ACCGAAA-TACCCTC-AAG
* * * * * *
37014347 GGTAAAATGACCGAATTACCCCTAGAGGGTAAAGTGATTGAATTACCGC-CGAAGGGTAAAGTGA
1 GGTAAAATGACCGAATTACCCCCAAAAGGTAAAATGACTGAATTACC-CTCGAAGGGTAAAATGA
* * * *
37014411 CCGGATTACACTTGAAG
65 CCGAAATAC-CCTCAAG
* * * *
37014428 GGTAGAATGATCGAATTACCCCCAAAAGGTAAAATGACTAAATTACCCTCAAAGGGTAAAATGAC
1 GGTAAAATGACCGAATTACCCCCAAAAGGTAAAATGACTGAATTACCCTCGAAGGGTAAAATGAC
37014493 CGAAATACCCTCATAG
66 CGAAATACCCTCA-AG
37014509 GGTAAAATGAC
1 GGTAAAATGAC
37014520 TGTTATACCC
Statistics
Matches: 133, Mismatches: 32, Indels: 15
0.74 0.18 0.08
Matches are distributed among these distances:
79 4 0.03
80 55 0.41
81 74 0.56
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (80 bp):
GGTAAAATGACCGAATTACCCCCAAAAGGTAAAATGACTGAATTACCCTCGAAGGGTAAAATGAC
CGAAATACCCTCAAG
Found at i:37014741 original size:26 final size:26
Alignment explanation
Indices: 37014707--37014783 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
37014697 GTGCCACATA
* * *
37014707 TACTGTTACTGGCAACTTTGTTGTAT
1 TACTATTACTGGCAGCTTTGTTGCAT
*
37014733 TACTATTACTGGTAGCTTTGTTGCAT
1 TACTATTACTGGCAGCTTTGTTGCAT
* *
37014759 CACTATTACTGGCAGCTTTGCTGCA
1 TACTATTACTGGCAGCTTTGTTGCA
37014784 ATATTGGTGT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (26 bp):
TACTATTACTGGCAGCTTTGTTGCAT
Found at i:37015679 original size:25 final size:25
Alignment explanation
Indices: 37015651--37015699 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
37015641 TCGTGCTATT
*
37015651 TTATT-TTATTATTTATTTTTTCTTC
1 TTATTCTTATT-TTTATATTTTCTTC
*
37015676 TTATTCTTCTTTTTATATTTTCTT
1 TTATTCTTATTTTTATATTTTCTT
37015700 TACTGTGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (25 bp):
TTATTCTTATTTTTATATTTTCTTC
Found at i:37018317 original size:10 final size:10
Alignment explanation
Indices: 37018304--37018328 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
37018294 ATAAAAAAAG
37018304 AAAAAAACCA
1 AAAAAAACCA
37018314 AAAAAAACCA
1 AAAAAAACCA
37018324 AAAAA
1 AAAAA
37018329 TAATATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAACCA
Found at i:37022898 original size:19 final size:20
Alignment explanation
Indices: 37022874--37022913 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
37022864 TCGACCCATT
37022874 TTATTCA-TGTTAGAAGAAA
1 TTATTCACTGTTAGAAGAAA
*
37022893 TTATTCACTTTTAGAAGAAA
1 TTATTCACTGTTAGAAGAAA
37022913 T
1 T
37022914 ATATGTGTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (20 bp):
TTATTCACTGTTAGAAGAAA
Found at i:37025005 original size:20 final size:20
Alignment explanation
Indices: 37024977--37025031 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
37024967 ATAGAAAATT
37024977 ATTGTACTTTGGTACCCCTG
1 ATTGTACTTTGGTACCCCTG
* ** *
37024997 ATTGCACTTACGTGCCCCTG
1 ATTGTACTTTGGTACCCCTG
*
37025017 TTTGTACTTTGGTAC
1 ATTGTACTTTGGTAC
37025032 TTTTATTATG
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.40
Consensus pattern (20 bp):
ATTGTACTTTGGTACCCCTG
Found at i:37027501 original size:25 final size:24
Alignment explanation
Indices: 37027472--37027559 Score: 95
Period size: 24 Copynumber: 3.6 Consensus size: 24
37027462 ATCCTGTACA
* *
37027472 TGTATGCTCACCCGAGCTGTAAATC
1 TGTATGCTCTCACGAGCTGT-AATC
* * *
37027497 TGTATACTCTCACGAGCTATAATA
1 TGTATGCTCTCACGAGCTGTAATC
* *
37027521 GGTATGCTCTCACAAGCTGTAATC
1 TGTATGCTCTCACGAGCTGTAATC
*
37027545 AGTATGCTCTCACGA
1 TGTATGCTCTCACGA
37027560 ACTGGGGGTG
Statistics
Matches: 51, Mismatches: 12, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
24 35 0.69
25 16 0.31
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (24 bp):
TGTATGCTCTCACGAGCTGTAATC
Found at i:37037445 original size:41 final size:40
Alignment explanation
Indices: 37037394--37037528 Score: 175
Period size: 41 Copynumber: 3.3 Consensus size: 40
37037384 TGCCATCGCT
* *
37037394 TAGCCGAAGCTATTATAATCTCGCACACTAAGTGCCTTACA
1 TAGCCGAAGCTATT-TAATCTCGCACACTAAGTGCCATAAA
* *
37037435 TAGCCGAAGCTATCTTAGTCTCGCACACTAAGTGCCATATA
1 TAGCCGAAGCTAT-TTAATCTCGCACACTAAGTGCCATAAA
*
37037476 TAGCCGAAGCTATTCCCAA--TCGCACACTAAGTGCCATAAA
1 TAGCCGAAGCTATT--TAATCTCGCACACTAAGTGCCATAAA
37037516 TAGCCGAAGCTAT
1 TAGCCGAAGCTAT
37037529 CACGAATCGT
Statistics
Matches: 85, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
40 34 0.40
41 49 0.58
42 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (40 bp):
TAGCCGAAGCTATTTAATCTCGCACACTAAGTGCCATAAA
Found at i:37037510 original size:40 final size:39
Alignment explanation
Indices: 37037414--37037545 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 39
37037404 TATTATAATC
* * ** *
37037414 TCGCACACTAAGTGCCTTACATAGCCGAAGCTATCTTAGTC
1 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATCCCA--A
*
37037455 TCGCACACTAAGTGCCATATATAGCCGAAGCTATTCCCAA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGCTA-TCCCAA
*
37037495 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATCACGAA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATC-CCAA
*
37037535 TCGTACACTAA
1 TCGCACACTAA
37037546 AAGCTAAACA
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 2 0.02
40 45 0.56
41 31 0.38
42 3 0.04
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.23
Consensus pattern (39 bp):
TCGCACACTAAGTGCCATAAATAGCCGAAGCTATCCCAA
Found at i:37042406 original size:18 final size:17
Alignment explanation
Indices: 37042383--37042421 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
37042373 TTGTATAAAT
37042383 TGTGAATT-ATAGTTGATA
1 TGTGAATTAATA-TTGA-A
37042401 TGTGAATTAATATTGAA
1 TGTGAATTAATATTGAA
37042418 TGTG
1 TGTG
37042422 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 12 0.60
19 3 0.15
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.44
Consensus pattern (17 bp):
TGTGAATTAATATTGAA
Found at i:37042539 original size:8 final size:8
Alignment explanation
Indices: 37042526--37042554 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
37042516 CACTAGAGAC
37042526 CAGTGTTA
1 CAGTGTTA
37042534 CAGTGTTA
1 CAGTGTTA
37042542 CAGTGTTA
1 CAGTGTTA
37042550 CAGTG
1 CAGTG
37042555 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:37042668 original size:23 final size:23
Alignment explanation
Indices: 37042641--37042716 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
37042631 AGTGTTATTG
37042641 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
37042664 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
37042687 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
37042710 ATCAGTG
1 ATCAGTG
37042717 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:37047588 original size:40 final size:40
Alignment explanation
Indices: 37047463--37047596 Score: 135
Period size: 40 Copynumber: 3.3 Consensus size: 40
37047453 TTATAATCCA
* * * * **
37047463 GCACAGTAAGTGCCTTACATAGCCAAAGTTATCTTAGTCTC
1 GCACACTAAGTGCCATAAATAGCCAAAGTTATC-TCGAATC
* ** * * *
37047504 GCACACTAAGTGCCATATATAGCTGAAGCTAT-TCCCAATA
1 GCACACTAAGTGCCATAAATAGCCAAAGTTATCT-CGAATC
37047544 GCACACTAAGTGCCATAAATAGCCAAAGTTATCTCGAATC
1 GCACACTAAGTGCCATAAATAGCCAAAGTTATCTCGAATC
37047584 GCACACTAAGTGC
1 GCACACTAAGTGC
37047597 TAAACATAGT
Statistics
Matches: 74, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
39 1 0.01
40 46 0.62
41 27 0.36
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (40 bp):
GCACACTAAGTGCCATAAATAGCCAAAGTTATCTCGAATC
Found at i:37049096 original size:21 final size:21
Alignment explanation
Indices: 37049056--37049097 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37049046 TGCCTATAAT
*
37049056 AATTTGTATCGAACTCTTACC
1 AATTTGTATCGAACTATTACC
37049077 AATTTGTATCAGAA-TATTACC
1 AATTTGTATC-GAACTATTACC
37049098 CGTTGAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (21 bp):
AATTTGTATCGAACTATTACC
Found at i:37049253 original size:24 final size:25
Alignment explanation
Indices: 37049188--37049256 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 25
37049178 ATCCTGTACA
* *
37049188 TGTATGCTCACACAAGCTGTAAATC
1 TGTATGCTCTCACGAGCTGTAAATC
* * *
37049213 TGTTTGCTCTTATGAGCTGT-AAT-
1 TGTATGCTCTCACGAGCTGTAAATC
37049236 TAGTATGCTCTCACGAGCTGT
1 T-GTATGCTCTCACGAGCTGT
37049257 GGGTCACAAC
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
23 1 0.03
24 19 0.54
25 15 0.43
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (25 bp):
TGTATGCTCTCACGAGCTGTAAATC
Found at i:37055320 original size:28 final size:27
Alignment explanation
Indices: 37055226--37055332 Score: 70
Period size: 30 Copynumber: 3.7 Consensus size: 27
37055216 AATCAGCCTA
* * *
37055226 GGCCTGAGCCCTATATAGTAGTAGTGTATG
1 GGCCTTAGCCCAATACAGTAG-AGTG--TG
* *
37055256 GGCCATAGCCCAATACTGTAATAGAGTGTG
1 GGCCTTAGCCCAATAC---AGTAGAGTGTG
**
37055286 AACCTTAGCCCAATACAGTAGCAGTGTG
1 GGCCTTAGCCCAATACAGTAG-AGTGTG
* *
37055314 GGCCTTAGCTCAAAACAGT
1 GGCCTTAGCCCAATACAGT
37055333 TTTCAATACA
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
27 4 0.07
28 21 0.35
30 27 0.45
32 4 0.07
33 4 0.07
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24
Consensus pattern (27 bp):
GGCCTTAGCCCAATACAGTAGAGTGTG
Found at i:37055480 original size:26 final size:26
Alignment explanation
Indices: 37055449--37055543 Score: 109
Period size: 26 Copynumber: 3.7 Consensus size: 26
37055439 CCAATATCAT
* * *
37055449 AACAAAGCTACCAATAATAATAACGC
1 AACAAAGCTGCCAGTAATAGTAACGC
* * *
37055475 AGCAAATCTGCCAGTAACAGTAACGC
1 AACAAAGCTGCCAGTAATAGTAACGC
* *
37055501 AACAGAGCTGCCAGTATTAGTAACGC
1 AACAAAGCTGCCAGTAATAGTAACGC
*
37055527 AACAAAGCTGCTAGTAA
1 AACAAAGCTGCCAGTAA
37055544 CAATATTTGT
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (26 bp):
AACAAAGCTGCCAGTAATAGTAACGC
Found at i:37055741 original size:27 final size:27
Alignment explanation
Indices: 37055711--37055762 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
37055701 TTACATCTCC
*
37055711 TAGAGGTATAACGGTCATTTTACCCTA
1 TAGAGGTATAACGGTAATTTTACCCTA
**
37055738 TAGAGGTATTTCGGTAATTTTACCC
1 TAGAGGTATAACGGTAATTTTACCC
37055763 ATCAAGGGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (27 bp):
TAGAGGTATAACGGTAATTTTACCCTA
Found at i:37055772 original size:27 final size:27
Alignment explanation
Indices: 37055722--37056162 Score: 487
Period size: 27 Copynumber: 16.4 Consensus size: 27
37055712 AGAGGTATAA
* *
37055722 CGGTCATTTTACCCTATAGA-GGTATTT
1 CGGTAATTTTACCC-ATCGAGGGTATTT
*
37055749 CGGTAATTTTACCCATCAAGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
* * ** *
37055776 CGATTATTTTACCTTTCGGGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
*
37055803 TGGTAATTTTACCCATCGAGGGTA-TT
1 CGGTAATTTTACCCATCGAGGGTATTT
* *
37055829 CTGGTAATTTTACCCTTCGAGGGTATTC
1 C-GGTAATTTTACCCATCGAGGGTATTT
* *
37055857 CGATTATTTTACCCATC-AGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
*
37055883 TGGTAATTTTACCCATCG-GGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
* *
37055909 CAGAAATTTTACCCATCGAGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
*
37055936 CGATAATTTTACCCATCGAGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
** *
37055963 CAATAATTTTACCTATCGAGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
* *
37055990 TGGTAATTTTA-CCATCAAGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
* *
37056016 CAGTAATTTTACCTATCGAGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
**
37056043 CAATAATTTTACCCATCGAGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
* * * *
37056070 CAGTAGTTTTACCTATCGTGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
* * *
37056097 TGATAATTTTACCTATCGAGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
** * *
37056124 CAATATTTTTACCCATTGAGGGTATTT
1 CGGTAATTTTACCCATCGAGGGTATTT
*
37056151 CAGTAATTTTAC
1 CGGTAATTTTAC
37056163 GGCCCAAGCC
Statistics
Matches: 348, Mismatches: 60, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
26 72 0.21
27 274 0.79
28 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41
Consensus pattern (27 bp):
CGGTAATTTTACCCATCGAGGGTATTT
Found at i:37056040 original size:107 final size:108
Alignment explanation
Indices: 37055727--37056162 Score: 533
Period size: 107 Copynumber: 4.1 Consensus size: 108
37055717 TATAACGGTC
* ** * * * *
37055727 ATTTTACCCTATAGA-GGTATTTCGGTAATTTTACCCATCAAGGGTATTTCGATTATTTTACCTT
1 ATTTTACCC-ATCGAGGGTATTTCAATAATTTTACCCATCGAGGGTATTTTGATAATTTTACCTA
* ** *
37055791 TCGGGGGTATTTTGGTAATTTTACCCATCGAGGGTA-TTCTGGTA
65 TCGAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTC-GATA
* * * * * *
37055835 ATTTTACCCTTCGAGGGTATTCCGATTATTTTACCCATC-AGGGTATTTTGGTAATTTTACCCAT
1 ATTTTACCCATCGAGGGTATTTCAATAATTTTACCCATCGAGGGTATTTTGATAATTTTACCTAT
*
37055899 CG-GGGTATTTCAGAAATTTTACCCATCGAGGGTATTTCGATA
66 CGAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGATA
* *
37055941 ATTTTACCCATCGAGGGTATTTCAATAATTTTACCTATCGAGGGTATTTTGGTAATTTTACC-AT
1 ATTTTACCCATCGAGGGTATTTCAATAATTTTACCCATCGAGGGTATTTTGATAATTTTACCTAT
* * *
37056005 CAAGGGTATTTCAGTAATTTTACCTATCGAGGGTATTTCAATA
66 CGAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGATA
* * * *
37056048 ATTTTACCCATCGAGGGTATTTCAGTAGTTTTACCTATCGTGGGTATTTTGATAATTTTACCTAT
1 ATTTTACCCATCGAGGGTATTTCAATAATTTTACCCATCGAGGGTATTTTGATAATTTTACCTAT
* * *
37056113 CGAGGGTATTTCAATATTTTTACCCATTGAGGGTATTTC-AGTA
66 CGAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGA-TA
37056156 ATTTTAC
1 ATTTTAC
37056163 GGCCCAAGCC
Statistics
Matches: 290, Mismatches: 32, Indels: 12
0.87 0.10 0.04
Matches are distributed among these distances:
106 69 0.24
107 146 0.50
108 75 0.26
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (108 bp):
ATTTTACCCATCGAGGGTATTTCAATAATTTTACCCATCGAGGGTATTTTGATAATTTTACCTAT
CGAGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGATA
Found at i:37057379 original size:26 final size:26
Alignment explanation
Indices: 37057303--37057401 Score: 90
Period size: 26 Copynumber: 3.8 Consensus size: 26
37057293 CCACAAATAT
* * *
37057303 TGTTACTGGTAACTTTGTTGCGTTAC
1 TGTTACTGGCAGCTTTGCTGCGTTAC
* * * * *
37057329 AGATACTGGCAGCTCTACTGTGTTAC
1 TGTTACTGGCAGCTTTGCTGCGTTAC
* *
37057355 TGTTATTGGCAGCTTTGCTGCGTTAT
1 TGTTACTGGCAGCTTTGCTGCGTTAC
* *
37057381 TATTACTGGTAGCTTTGCTGC
1 TGTTACTGGCAGCTTTGCTGC
37057402 AATATTGGTG
Statistics
Matches: 55, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.41
Consensus pattern (26 bp):
TGTTACTGGCAGCTTTGCTGCGTTAC
Found at i:37057575 original size:30 final size:29
Alignment explanation
Indices: 37057522--37057624 Score: 127
Period size: 30 Copynumber: 3.5 Consensus size: 29
37057512 GAATACTATT
37057522 TTGGGCTAAGGCCCACA-CTGTTACTGTA
1 TTGGGCTAAGGCCCACACCTGTTACTGTA
37057550 TTGGGCTAAGGCCCACACTCTGTTACTGTA
1 TTGGGCTAAGGCCCACAC-CTGTTACTGTA
* ** *
37057580 TTGGGCTATGGCCCACACACTACTATTGTA
1 TTGGGCTAAGGCCCACAC-CTGTTACTGTA
* *
37057610 TAGGGCTCAGGCCCA
1 TTGGGCTAAGGCCCA
37057625 GATTGATTCT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
28 17 0.26
30 48 0.74
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.27
Consensus pattern (29 bp):
TTGGGCTAAGGCCCACACCTGTTACTGTA
Found at i:37064296 original size:27 final size:27
Alignment explanation
Indices: 37064265--37064475 Score: 212
Period size: 27 Copynumber: 7.8 Consensus size: 27
37064255 CCCTAAAATA
* *
37064265 GGTAAAATGGTCAAAATACCCTTATAG
1 GGTAAAATGATCAAAATACCCCTATAG
* * * *
37064292 GGTAAAATGACCGAAATACCCCCACAG
1 GGTAAAATGATCAAAATACCCCTATAG
*
37064319 GGTAAAATGATCGAAATACCCCTATAG
1 GGTAAAATGATCAAAATACCCCTATAG
*
37064346 GGCAAAATGATCAAAATA-CCCTCATAG
1 GGTAAAATGATCAAAATACCCCT-ATAG
37064373 GGTAAAATGATCAAAATACCTCCT-TAG
1 GGTAAAATGATCAAAATACC-CCTATAG
* * *
37064400 GGTAAAATTA-CTGAAATATCCCTATAG
1 GGTAAAATGATC-AAAATACCCCTATAG
* * * * *
37064427 GATAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGATCAAAATACCCCTATAG
* *
37064454 GGTAAAATGACCAACATACCCC
1 GGTAAAATGATCAAAATACCCC
37064476 CGATAATTGC
Statistics
Matches: 154, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
26 8 0.05
27 141 0.92
28 2 0.01
29 3 0.02
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (27 bp):
GGTAAAATGATCAAAATACCCCTATAG
Found at i:37064336 original size:54 final size:54
Alignment explanation
Indices: 37064265--37064476 Score: 239
Period size: 54 Copynumber: 3.9 Consensus size: 54
37064255 CCCTAAAATA
* * *
37064265 GGTAAAATGGTCAAAATACCCTTATAGGGTAAAATGACCGAAATACCCCCACAG
1 GGTAAAATGATCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAG
* * * * *
37064319 GGTAAAATGATCGAAATACCCCTATAGGGCAAAATGATCAAAATACCCTCATAG
1 GGTAAAATGATCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAG
* * * *
37064373 GGTAAAATGATCAAAATACCTCCT-TAGGGTAAAATTACTGAAATATCCCTATAG
1 GGTAAAATGATCAAAATACC-CCTATAGGGTAAAATGACCGAAATACCCCCATAG
* * * * *
37064427 GATAGAATGACCGAAATACCCCCATAGGGTAAAATGACC-AACATACCCCC
1 GGTAAAATGATCAAAATACCCCTATAGGGTAAAATGACCGAA-ATACCCCC
37064477 GATAATTGCA
Statistics
Matches: 129, Mismatches: 26, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
53 4 0.03
54 122 0.95
55 3 0.02
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (54 bp):
GGTAAAATGATCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAG
Found at i:37064403 original size:81 final size:81
Alignment explanation
Indices: 37064268--37064476 Score: 258
Period size: 81 Copynumber: 2.6 Consensus size: 81
37064258 TAAAATAGGT
* * *
37064268 AAAATGGTCAAAATACCCTTATAGGGTAAAATGACCGAAATACCCCCACAGGGTAAAATGA-TCG
1 AAAATGATCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGACT-G
*
37064332 AAATACCCCTATAGGGC
65 AAATACCCCTATAGGAC
* * ** *
37064349 AAAATGATCAAAATACCCTCATAGGGTAAAATGATCAAAATACCTCCTTAGGGTAAAATTACTGA
1 AAAATGATCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGACTGA
* *
37064414 AATATCCCTATAGGAT
66 AATACCCCTATAGGAC
* * * * *
37064430 AGAATGACCGAAATACCCCCATAGGGTAAAATGACCAACATACCCCC
1 AAAATGATCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCC
37064477 GATAATTGCA
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 108 0.99
82 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (81 bp):
AAAATGATCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGACTGA
AATACCCCTATAGGAC
Found at i:37069339 original size:29 final size:29
Alignment explanation
Indices: 37069306--37069369 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
37069296 TAATCCACCA
37069306 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
37069335 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
37069365 CCCAA
1 CCCAA
37069370 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:37069343 original size:30 final size:30
Alignment explanation
Indices: 37069313--37069369 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
37069303 CCACCCAACT
37069313 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
37069342 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
37069370 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:37070293 original size:27 final size:27
Alignment explanation
Indices: 37070253--37070584 Score: 303
Period size: 27 Copynumber: 12.4 Consensus size: 27
37070243 ACCGTAAAAT
* *
37070253 AGGTAAAATGATCGAAATACCCCCGTA
1 AGGTAAAATGACCGAAATACCCCCATA
* *
37070280 AGGTAAAATAATCGAAATACCCCCATA
1 AGGTAAAATGACCGAAATACCCCCATA
* * *
37070307 GGGTAAAATGACCAAAATACCCCGATA
1 AGGTAAAATGACCGAAATACCCCCATA
37070334 AGGTAAAATGACCGAAATACCCCCATA
1 AGGTAAAATGACCGAAATACCCCCATA
* *
37070361 GGGTAAAATGACAGAAATA-CCCCATA
1 AGGTAAAATGACCGAAATACCCCCATA
* *
37070387 AGATAGAA-GACCTGAAATA-CCCCATA
1 AGGTAAAATGACC-GAAATACCCCCATA
* * * * *
37070413 AGATAGAATAACTGAAATA-CCCTATA
1 AGGTAAAATGACCGAAATACCCCCATA
* * *
37070439 GGGTAAAATGACCAAAATACCCTCATA
1 AGGTAAAATGACCGAAATACCCCCATA
* * * *
37070466 GGGTAGAATGACCAAAATAACCCCCGTA
1 AGGTAAAATGACCGAAAT-ACCCCCATA
* * *
37070494 GGGTAATATGACCGAAATACCCTCATA
1 AGGTAAAATGACCGAAATACCCCCATA
* * * *
37070521 AGATAGAATGACTGAAAGACCCCCATA
1 AGGTAAAATGACCGAAATACCCCCATA
* * * *
37070548 GGGTAATATGACCAAAATACCCTCATA
1 AGGTAAAATGACCGAAATACCCCCATA
*
37070575 GGGTAAAATG
1 AGGTAAAATG
37070585 GTTGTTATAT
Statistics
Matches: 250, Mismatches: 51, Indels: 8
0.81 0.17 0.03
Matches are distributed among these distances:
25 3 0.01
26 58 0.23
27 167 0.67
28 22 0.09
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (27 bp):
AGGTAAAATGACCGAAATACCCCCATA
Found at i:37074536 original size:4 final size:4
Alignment explanation
Indices: 37074529--37074569 Score: 59
Period size: 4 Copynumber: 10.8 Consensus size: 4
37074519 CGTGCAAACA
*
37074529 AAAG AAAG AAAG -AA- AAAG AAAG AAAG AAAG AAAA AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
37074570 AAGAAGAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 4 0.12
4 29 0.88
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:37074547 original size:14 final size:14
Alignment explanation
Indices: 37074528--37074574 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
37074518 GCGTGCAAAC
37074528 AAAAGAAAGAAAGA
1 AAAAGAAAGAAAGA
37074542 AAAAGAAAGAAAG-
1 AAAAGAAAGAAAGA
*
37074555 -AAAGAAAAAAAGA
1 AAAAGAAAGAAAGA
37074568 AAAAGAA
1 AAAAGAA
37074575 GAAGAATCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 11 0.37
14 19 0.63
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAGAAAGAAAGA
Found at i:37074552 original size:18 final size:18
Alignment explanation
Indices: 37074529--37074563 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
37074519 CGTGCAAACA
37074529 AAAGAAAGAAAGAAAAAG
1 AAAGAAAGAAAGAAAAAG
37074547 AAAGAAAGAAAGAAAAA
1 AAAGAAAGAAAGAAAAA
37074564 AAGAAAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAGAAAGAAAGAAAAAG
Found at i:37074572 original size:18 final size:18
Alignment explanation
Indices: 37074528--37074574 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
37074518 GCGTGCAAAC
37074528 AAAAGAAAGAAAGAAAAAG
1 AAAA-AAAGAAAGAAAAAG
*
37074547 AAAGAAAGAAAGAAAAA-
1 AAAAAAAGAAAGAAAAAG
37074564 AAGAAAAAGAA
1 AA-AAAAAGAA
37074575 GAAGAATCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.08
18 20 0.80
19 3 0.12
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (18 bp):
AAAAAAAGAAAGAAAAAG
Found at i:37076979 original size:23 final size:23
Alignment explanation
Indices: 37076949--37076993 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
37076939 TTGTATTGGG
37076949 GTGGATTAGCAAACCTAAATTAT
1 GTGGATTAGCAAACCTAAATTAT
37076972 GTGGATTAGCAAACCTAAATTA
1 GTGGATTAGCAAACCTAAATTA
37076994 AGTGTAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (23 bp):
GTGGATTAGCAAACCTAAATTAT
Found at i:37077175 original size:49 final size:49
Alignment explanation
Indices: 37077103--37077196 Score: 134
Period size: 49 Copynumber: 1.9 Consensus size: 49
37077093 TCAAGAAGGG
* * * * *
37077103 ATAAATAGTGATTAGAGTGTAGATAGTAGAAGAATAAGTTTAGCAATGT
1 ATAAATAGTAATAAAAGTGTAGATAATAGAAGAACAAGTTTAGCAATGT
*
37077152 ATAAATAGTAATAAAAGTGTAGATAATGGAAGAACAAGTTTAGCA
1 ATAAATAGTAATAAAAGTGTAGATAATAGAAGAACAAGTTTAGCA
37077197 TTGCATGGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.47, C:0.03, G:0.22, T:0.28
Consensus pattern (49 bp):
ATAAATAGTAATAAAAGTGTAGATAATAGAAGAACAAGTTTAGCAATGT
Found at i:37081502 original size:42 final size:41
Alignment explanation
Indices: 37081441--37081577 Score: 123
Period size: 42 Copynumber: 3.3 Consensus size: 41
37081431 ATATGTTATT
* * * *
37081441 GTGTAAGACCACGTTTGGGACGTTGTCATCG-ACTTGTGTTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGTA-TT-TGTTAC
*
37081483 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGTTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGTTAC
* * * * * *
37081524 ATGTAAGACCCTGTCTGGGACACTGGTATCGATATGTGATTAT
1 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTG-TTAC
*
37081567 ATGTAAGACCA
1 GTGTAAGACCA
37081578 CGTCCAGGAC
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
41 32 0.41
42 34 0.43
43 13 0.16
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (41 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGTTAC
Found at i:37081539 original size:41 final size:43
Alignment explanation
Indices: 37081484--37081595 Score: 122
Period size: 41 Copynumber: 2.7 Consensus size: 43
37081474 TTGTGTTACG
* *
37081484 TGTAAGACCATGTCTGGGACATTGGCATCG-TATTTG-TT-TCA
1 TGTAAGACCATGTCTGGGACACTGGCATCGATATGTGATTAT-A
* *
37081525 TGTAAGACCCTGTCTGGGACACTGGTATCGATATGTGATTATA
1 TGTAAGACCATGTCTGGGACACTGGCATCGATATGTGATTATA
* ** *
37081568 TGTAAGACCACGTCCAGGACGCTGGCAT
1 TGTAAGACCATGTCTGGGACACTGGCAT
37081596 TGTACAAGCT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
41 27 0.47
42 5 0.09
43 25 0.43
44 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACACTGGCATCGATATGTGATTATA
Found at i:37091286 original size:29 final size:29
Alignment explanation
Indices: 37091247--37091317 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
37091237 ATTATCGAAG
* *
37091247 AATGAAAAGGGATATCTTCAGCTATTGA-
1 AATGAAAAGGGATAGCTTCAGCTATCGAT
*
37091275 ATATGAAAAGGGATAGCTTCGGCTATCGAT
1 A-ATGAAAAGGGATAGCTTCAGCTATCGAT
37091305 AATGAAAAGGGAT
1 AATGAAAAGGGAT
37091318 GGTGATGACC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.03
29 36 0.95
30 1 0.03
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.25
Consensus pattern (29 bp):
AATGAAAAGGGATAGCTTCAGCTATCGAT
Found at i:37091337 original size:29 final size:30
Alignment explanation
Indices: 37091305--37091378 Score: 114
Period size: 29 Copynumber: 2.5 Consensus size: 30
37091295 GGCTATCGAT
**
37091305 AATGAAAAGGGATGGTGATGACCATC-AAC
1 AATGAAAAGGGATGGTGACAACCATCGAAC
37091334 AATGAAAAGGGATGGTGACAACCATCGAAC
1 AATGAAAAGGGATGGTGACAACCATCGAAC
*
37091364 TATGAAAAGGGATGG
1 AATGAAAAGGGATGG
37091379 CTTCGGCTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 24 0.59
30 17 0.41
ACGTcount: A:0.42, C:0.12, G:0.30, T:0.16
Consensus pattern (30 bp):
AATGAAAAGGGATGGTGACAACCATCGAAC
Found at i:37091391 original size:30 final size:30
Alignment explanation
Indices: 37091239--37091521 Score: 131
Period size: 30 Copynumber: 9.7 Consensus size: 30
37091229 TAATGTCGAT
** * *
37091239 TATCGAAGAATGAAAAGGGATATCTTCAGC
1 TATCGAACTATGAAAAGGGATAGCTTCGGC
*
37091269 TATTGAA-TATGAAAAGGGATAGCTTCGGC
1 TATCGAACTATGAAAAGGGATAGCTTCGGC
* *
37091298 TATCG-A-TAATGAAAAGGGAT-GGTGAT-GAC
1 TATCGAACT-ATGAAAAGGGATAGCT--TCGGC
* * * * **
37091327 CATC-AACAATGAAAAGGGAT-GGTGACAAC
1 TATCGAACTATGAAAAGGGATAGCT-TCGGC
* *
37091356 CATCGAACTATGAAAAGGGATGGCTTCGGC
1 TATCGAACTATGAAAAGGGATAGCTTCGGC
* * *
37091386 TATCGATCTATGAAAATGGATAGCTTCGAC
1 TATCGAACTATGAAAAGGGATAGCTTCGGC
* * * * * **
37091416 TATCAAATTGTGAAAAAGGAT-GGTGAGG-
1 TATCGAACTATGAAAAGGGATAGCTTCGGC
* * *
37091444 -A--AAATTATGAAAGGGGATAGCTTCGGC
1 TATCGAACTATGAAAAGGGATAGCTTCGGC
* * * **
37091471 TGTCGAACTATGAAAAGGGGTAACTTCGAT
1 TATCGAACTATGAAAAGGGATAGCTTCGGC
* *
37091501 TATGGAATTATGAAAAGGGAT
1 TATCGAACTATGAAAAGGGAT
37091522 GTGTCAACTA
Statistics
Matches: 191, Mismatches: 49, Indels: 26
0.72 0.18 0.10
Matches are distributed among these distances:
25 14 0.07
26 4 0.02
27 1 0.01
28 4 0.02
29 65 0.34
30 101 0.53
31 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (30 bp):
TATCGAACTATGAAAAGGGATAGCTTCGGC
Found at i:37091467 original size:85 final size:85
Alignment explanation
Indices: 37091364--37091522 Score: 210
Period size: 85 Copynumber: 1.9 Consensus size: 85
37091354 ACCATCGAAC
* * * * *
37091364 TATGAAAAGGGATGGCTTCGGCTATCGATCTATGAAAATGGATAGCTTCGACTATCAAATTGTGA
1 TATGAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGATAACTTCGACTATCAAATTATGA
37091429 AAAAGGATGGTGAGGAAAAT
66 AAAAGGATGGTGAGGAAAAT
* * * * **
37091449 TATGAAAGGGGATAGCTTCGGCTGTCGAACTATGAAAAGGGGTAACTTCGATTATGGAATTATGA
1 TATGAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGATAACTTCGACTATCAAATTATGA
*
37091514 AAAGGGATG
66 AAAAGGATG
37091523 TGTCAACTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
85 62 1.00
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26
Consensus pattern (85 bp):
TATGAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGATAACTTCGACTATCAAATTATGA
AAAAGGATGGTGAGGAAAAT
Found at i:37095771 original size:18 final size:17
Alignment explanation
Indices: 37095758--37095801 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
37095748 CCTAGTTATC
37095758 ATTA-TTATATTAGTGTT
1 ATTATTTATATTAGT-TT
*
37095775 ATTATTTATATTAGTTC
1 ATTATTTATATTAGTTT
37095792 ATATATTTAT
1 AT-TATTTAT
37095802 CTATGTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (17 bp):
ATTATTTATATTAGTTT
Found at i:37096056 original size:14 final size:13
Alignment explanation
Indices: 37096037--37096076 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
37096027 TTGACTTTAA
37096037 ATATATTATTATAT
1 ATATATTATTAT-T
*
37096051 ATATATTATCATT
1 ATATATTATTATT
37096064 -TATATTATTATT
1 ATATATTATTATT
37096076 A
1 A
37096077 AAATTTTCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 11 0.48
13 1 0.04
14 11 0.48
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (13 bp):
ATATATTATTATT
Found at i:37101967 original size:13 final size:13
Alignment explanation
Indices: 37101937--37101967 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
37101927 AAAAGGGATG
37101937 AAAAATGAAAAAT
1 AAAAATGAAAAAT
*
37101950 GAAAATGAAAAAT
1 AAAAATGAAAAAT
37101963 AAAAA
1 AAAAA
37101968 AATGATGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (13 bp):
AAAAATGAAAAAT
Found at i:37101968 original size:7 final size:7
Alignment explanation
Indices: 37101934--37101967 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
37101924 AAAAAAAGGG
37101934 ATGAAAA
1 ATGAAAA
37101941 ATGAAAA
1 ATGAAAA
37101948 ATG-AAA
1 ATGAAAA
37101954 ATGAAAA
1 ATGAAAA
37101961 AT-AAAA
1 ATGAAAA
37101967 A
1 A
37101968 AATGATGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 11 0.42
7 15 0.58
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.15
Consensus pattern (7 bp):
ATGAAAA
Found at i:37111983 original size:128 final size:128
Alignment explanation
Indices: 37111698--37111930 Score: 333
Period size: 128 Copynumber: 1.8 Consensus size: 128
37111688 CCTGACCAGC
* * *
37111698 AGTGGAATAGGTTGGGAAATTATAGATCTTGTCTCCTTAAGCAGTAGCGGAGCAGATCAAGGACA
1 AGTGGAAGAGGAT-GGAAATTATAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAGGACA
* *
37111763 GCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCATATGTCCCTAGTCAGT
65 GCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTGAAGCCACAAGTCATATCTCCCTAGTCAGT
* * ** **
37111827 AGTGGAATAGGCTGGAAATTGCAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAA-GATG
1 AGTGGAAGAGGATGGAAATTATAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATC-AAGGACA
*
37111891 GCGAATCTTATCTTCAAGTGTAAGTAAGCAGATTGAAGCC
65 GCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTGAAGCC
37111931 GATAATCCTA
Statistics
Matches: 95, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
128 81 0.85
129 14 0.15
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (128 bp):
AGTGGAAGAGGATGGAAATTATAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAGGACAG
CGAATCTTATCTTCAAGTGTAAGGAAGCAGATTGAAGCCACAAGTCATATCTCCCTAGTCAGT
Found at i:37112101 original size:44 final size:44
Alignment explanation
Indices: 37112015--37112401 Score: 125
Period size: 44 Copynumber: 8.9 Consensus size: 44
37112005 AGCGGATCGC
** * *
37112015 AGCAAATCTTATC-CCCTTGAAGTCACAGTGGGGCAGACTGAAGA
1 AGCAAATCTTATCTCCC-TGAAGTTGCACTGGAGCAGACTGAAGA
* * *
37112059 AGCAAATCTTATCTCCCTGAAGTTGCACTGGAGTAGATTGAAGT
1 AGCAAATCTTATCTCCCTGAAGTTGCACTGGAGCAGACTGAAGA
* * * * * * *
37112103 CG-ATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTA
1 AGCA-AATCTTATCTCCCTGAAGTTGCACTGGAGCAGACTGAAG-A
* * ** * * * ** * *
37112148 A-CAGATCTTATCACTATGAAGTTACAGTAGAGTGGA-T--CGC
1 AGCAAATCTTATCTCCCTGAAGTTGCACTGGAGCAGACTGAAGA
* ** *
37112188 ATCAGGTCTTATCTCCCTGAAGTTG-AGGTGGAGCAGACTG-AGAA
1 AGCAAATCTTATCTCCCTGAAGTTGCA-CTGGAGCAGACTGAAG-A
* * * * *
37112232 AACAAGTCTTATCCCCCTGAAG-T-CACGGTGGGGCTGACTGAAGA
1 AGCAAATCTTATCTCCCTGAAGTTGCAC--TGGAGCAGACTGAAGA
* * * * * *
37112276 AGCAAATCTTATCACTCT-AAGGTTGCAGTGGAGCAGATTAAAGT
1 AGCAAATCTTATCTCCCTGAA-GTTGCACTGGAGCAGACTGAAGA
* * * * * * *
37112320 CG-ATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTA
1 AGCA-AATCTTATCTCCCTGAAGTTGCACTGGAGCAGACTGAAG-A
* * * * *
37112365 A-TAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAC
1 AGCAAATCTTATCTCCCTGAAGTTGCACTGGAGCAGAC
37112402 CGCATCAACT
Statistics
Matches: 255, Mismatches: 68, Indels: 40
0.70 0.19 0.11
Matches are distributed among these distances:
40 2 0.01
41 26 0.10
42 1 0.00
43 8 0.03
44 206 0.81
45 10 0.04
46 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (44 bp):
AGCAAATCTTATCTCCCTGAAGTTGCACTGGAGCAGACTGAAGA
Found at i:37112226 original size:173 final size:173
Alignment explanation
Indices: 37111920--37112254 Score: 478
Period size: 173 Copynumber: 1.9 Consensus size: 173
37111910 GTAAGTAAGC
* * *
37111920 AGATTGAAGCCGATAATCCTATCTTCCTGAAGTTGTAGTGGAGCGGATTAAAGTTATAGATCTTA
1 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAACAGATCTTA
* * *
37111985 TCTCTATGAAGTTGCAGTAGAGCGGATCGCAGCAAATCTTATCCCCTTGAAGTCACAGTGGGGCA
66 TCACTATGAAGTTACAGTAGAGCGGATCGCAGCAAATCTTATCCCCTTGAAGTCACAGTGGAGCA
* *
37112050 GACTGA-AGAAGCAAATCTTATCTCCCTGAAGTTGCACTGGAGT
131 GACTGAGA-AAACAAATCTTATCCCCCTGAAGTTGCACTGGAGT
*
37112093 AGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAACAGATCTTA
1 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAACAGATCTTA
* * ** * *
37112158 TCACTATGAAGTTACAGTAGAGTGGATCGCATCAGGTCTTATCTCCC-TGAAGTTGA-GGTGGAG
66 TCACTATGAAGTTACAGTAGAGCGGATCGCAGCAAATCTTATC-CCCTTGAAG-TCACAGTGGAG
*
37112221 CAGACTGAGAAAACAAGTCTTATCCCCCTGAAGT
129 CAGACTGAGAAAACAAATCTTATCCCCCTGAAGT
37112255 CACGGTGGGG
Statistics
Matches: 143, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
173 137 0.96
174 6 0.04
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (173 bp):
AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAACAGATCTTA
TCACTATGAAGTTACAGTAGAGCGGATCGCAGCAAATCTTATCCCCTTGAAGTCACAGTGGAGCA
GACTGAGAAAACAAATCTTATCCCCCTGAAGTTGCACTGGAGT
Found at i:37112308 original size:173 final size:173
Alignment explanation
Indices: 37111931--37112319 Score: 425
Period size: 173 Copynumber: 2.2 Consensus size: 173
37111921 GATTGAAGCC
** * * *
37111931 GATAATCCTATCTTCCTGAAGTTGTAGTGGAGCGGATTAAAGTTATAGATCTTATCTCTATGAAG
1 GATAATCCTATCACCCTGAAGTTGTAGTGGAGCGGATTAAAGTAACAGATCTTATCACTATGAAG
* * *
37111996 TTGCAGTAGAGCGGATCGCAGCAAATCTTATCCCCTTGAAGTCACAGTGGGGCAGACTGAAGAAG
66 TTACAGTAGAGCGGATCGCAGCAAATCTTATCCCCTTGAAGTCACAGTGGAGCAGACTGAAGAAA
* * **
37112061 CAAATCTTATCTCCCTGAAGTTGCACTGGAGTAGATTGAAGTC
131 CAAATCTTATCCCCCTGAAGTTGCACTGGAGTAGACTGAAGAA
*
37112104 GATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAACAGATCTTATCACTATGAAG
1 GATAATCCTATCACCCTGAAGTTGTAGTGGAGCGGATTAAAGTAACAGATCTTATCACTATGAAG
* * ** * *
37112169 TTACAGTAGAGTGGATCGCATCAGGTCTTATCTCCC-TGAAGTTGA-GGTGGAGCAGACTG-AGA
66 TTACAGTAGAGCGGATCGCAGCAAATCTTATC-CCCTTGAAG-TCACAGTGGAGCAGACTGAAG-
* *
37112231 AAACAAGTCTTATCCCCCTGAAG-T-CACGGTGGGGCT-GACTGAAGAA
128 AAACAAATCTTATCCCCCTGAAGTTGCAC--TGGAG-TAGACTGAAGAA
* * * *
37112277 GCA-AATCTTATCACTCT-AAGGTTGCAGTGGAGCAGATTAAAGT
1 G-ATAATCCTATCACCCTGAA-GTTGTAGTGGAGCGGATTAAAGT
37112320 CGATAATCCT
Statistics
Matches: 184, Mismatches: 24, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
171 3 0.02
172 5 0.03
173 169 0.92
174 7 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (173 bp):
GATAATCCTATCACCCTGAAGTTGTAGTGGAGCGGATTAAAGTAACAGATCTTATCACTATGAAG
TTACAGTAGAGCGGATCGCAGCAAATCTTATCCCCTTGAAGTCACAGTGGAGCAGACTGAAGAAA
CAAATCTTATCCCCCTGAAGTTGCACTGGAGTAGACTGAAGAA
Found at i:37116963 original size:11 final size:11
Alignment explanation
Indices: 37116944--37116974 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
37116934 GGGGAATTTT
*
37116944 TTTTGCTTAGA
1 TTTTACTTAGA
37116955 TTTTACTTAGA
1 TTTTACTTAGA
37116966 TTTTACTTA
1 TTTTACTTA
37116975 AAATAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.58
Consensus pattern (11 bp):
TTTTACTTAGA
Found at i:37132072 original size:27 final size:27
Alignment explanation
Indices: 37132029--37132127 Score: 146
Period size: 27 Copynumber: 3.7 Consensus size: 27
37132019 ACCCTAAATT
* *
37132029 AGGTAAAATGACC-AAATACCCCCACA
1 AGGTAGAATGACCGAAATACCCCCATA
37132055 AGGTAGAATGACCGAAATACCCCCATA
1 AGGTAGAATGACCGAAATACCCCCATA
*
37132082 GGGTAGAATGACCGAAATACCCCCATA
1 AGGTAGAATGACCGAAATACCCCCATA
* *
37132109 ACGTAGAATGATCGAAATA
1 AGGTAGAATGACCGAAATA
37132128 TCCCATAGGA
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
26 12 0.18
27 54 0.82
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.15
Consensus pattern (27 bp):
AGGTAGAATGACCGAAATACCCCCATA
Found at i:37132179 original size:27 final size:27
Alignment explanation
Indices: 37132149--37132363 Score: 213
Period size: 27 Copynumber: 8.0 Consensus size: 27
37132139 AAAATTATCG
*
37132149 AAATACCCTCGAATGGTAAAATTACTA
1 AAATACCCTCGAAGGGTAAAATTACTA
* * *
37132176 AAATACACTCAAAGGGTAAAATTA-TCG
1 AAATACCCTCGAAGGGTAAAATTACT-A
37132203 AAATACCCTCGAAGGGTAAAATTAAC-A
1 AAATACCCTCGAAGGGTAAAATT-ACTA
* * *
37132230 AAATACACTCGAAGAGTAAAATTACCA
1 AAATACCCTCGAAGGGTAAAATTACTA
* * *
37132257 AAATTCCCTCGAAGGGT-AAATTATTG
1 AAATACCCTCGAAGGGTAAAATTACTA
** *
37132283 AAATACCCTTAAAGGGTAAAATTACTG
1 AAATACCCTCGAAGGGTAAAATTACTA
* *
37132310 AAATACCCTCGAAGGGTAAAATGACTG
1 AAATACCCTCGAAGGGTAAAATTACTA
* *
37132337 AAGTACCC-CTGAAGGGGTAAAAATACT
1 AAATACCCTC-GAA-GGGTAAAATTACT
37132364 GTTATGATGA
Statistics
Matches: 156, Mismatches: 25, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
26 24 0.15
27 120 0.77
28 12 0.08
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.22
Consensus pattern (27 bp):
AAATACCCTCGAAGGGTAAAATTACTA
Found at i:37132206 original size:54 final size:54
Alignment explanation
Indices: 37132138--37132331 Score: 259
Period size: 54 Copynumber: 3.6 Consensus size: 54
37132128 TCCCATAGGA
*
37132138 TAAAATTATCGAAATACCCTCGAATGGTAAAATTACTAAAATACACTCAAAGGG
1 TAAAATTATCGAAATACCCTCGAAGGGTAAAATTACTAAAATACACTCAAAGGG
* *
37132192 TAAAATTATCGAAATACCCTCGAAGGGTAAAATTAAC-AAAATACACTCGAAGAG
1 TAAAATTATCGAAATACCCTCGAAGGGTAAAATT-ACTAAAATACACTCAAAGGG
* * * * * * *
37132246 TAAAATTACCAAAATTCCCTCGAAGGGT-AAATTATTGAAATACCCTTAAAGGG
1 TAAAATTATCGAAATACCCTCGAAGGGTAAAATTACTAAAATACACTCAAAGGG
37132299 TAAAATTA-CTGAAATACCCTCGAAGGGTAAAAT
1 TAAAATTATC-GAAATACCCTCGAAGGGTAAAAT
37132332 GACTGAAGTA
Statistics
Matches: 122, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
52 2 0.02
53 41 0.34
54 77 0.63
55 2 0.02
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.24
Consensus pattern (54 bp):
TAAAATTATCGAAATACCCTCGAAGGGTAAAATTACTAAAATACACTCAAAGGG
Found at i:37132278 original size:107 final size:108
Alignment explanation
Indices: 37132138--37132331 Score: 293
Period size: 107 Copynumber: 1.8 Consensus size: 108
37132128 TCCCATAGGA
* * *
37132138 TAAAATTATCGAAATACCCTCGAATGGTAAAATTACTAAAATACACTCAAAGGGTAAAATTA-TC
1 TAAAATTACCAAAATACCCTCGAAGGGTAAAATTACTAAAATACACTCAAAGGGTAAAATTACT-
37132202 GAAATACCCTCGAAGGGTAAAATTAACAAAATACACTCGAAGAG
65 GAAATACCCTCGAAGGGTAAAATTAACAAAATACACTCGAAGAG
* * * * *
37132246 TAAAATTACCAAAATTCCCTCGAAGGGT-AAATTATTGAAATACCCTTAAAGGGTAAAATTACTG
1 TAAAATTACCAAAATACCCTCGAAGGGTAAAATTACTAAAATACACTCAAAGGGTAAAATTACTG
37132310 AAATACCCTCGAAGGGTAAAAT
66 AAATACCCTCGAAGGGTAAAAT
37132332 GACTGAAGTA
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
107 52 0.68
108 25 0.32
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.24
Consensus pattern (108 bp):
TAAAATTACCAAAATACCCTCGAAGGGTAAAATTACTAAAATACACTCAAAGGGTAAAATTACTG
AAATACCCTCGAAGGGTAAAATTAACAAAATACACTCGAAGAG
Found at i:37132351 original size:80 final size:80
Alignment explanation
Indices: 37132119--37132357 Score: 252
Period size: 80 Copynumber: 3.0 Consensus size: 80
37132109 ACGTAGAATG
* * * *
37132119 ATCGAAATATCC-CATAGGATAAAATTA-TCGAAATACCCTCGAATGGTAAAATTACTAAAATAC
1 ATCGAAATACCCTCAAAGGGTAAAATTACT-GAAATACCCTCGAAGGGTAAAATTACTAAAATAC
* *
37132182 ACTCAAAGGGTAAAATT
65 CCTCGAAGGGT-AAATT
* * * * * *
37132199 ATCGAAATACCCTCGAAGGGTAAAATTAAC-AAAATACACTCGAAGAGTAAAATTACCAAAATTC
1 ATCGAAATACCCTCAAAGGGTAAAATT-ACTGAAATACCCTCGAAGGGTAAAATTACTAAAATAC
37132263 CCTCGAAGGGTAAATT
65 CCTCGAAGGGTAAATT
* * * * *
37132279 ATTGAAATACCCTTAAAGGGTAAAATTACTGAAATACCCTCGAAGGGTAAAATGACTGAAGTACC
1 ATCGAAATACCCTCAAAGGGTAAAATTACTGAAATACCCTCGAAGGGTAAAATTACTAAAATACC
37132344 C-CTGAAGGGGTAAA
66 CTC-GAA-GGGTAAA
37132358 AATACTGTTA
Statistics
Matches: 130, Mismatches: 23, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
79 3 0.02
80 71 0.55
81 55 0.42
82 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.23
Consensus pattern (80 bp):
ATCGAAATACCCTCAAAGGGTAAAATTACTGAAATACCCTCGAAGGGTAAAATTACTAAAATACC
CTCGAAGGGTAAATT
Found at i:37132578 original size:26 final size:26
Alignment explanation
Indices: 37132549--37132599 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
37132539 ACATATACTG
*
37132549 TTACTGGCAGCTTTGCTGCGTTATTA
1 TTACTGGCAGCTTTGCTGCGATATTA
37132575 TTACTGGCAGCTTTGCTGCGATATT
1 TTACTGGCAGCTTTGCTGCGATATT
37132600 GGTGTGTTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.41
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCGATATTA
Found at i:37132736 original size:28 final size:28
Alignment explanation
Indices: 37132691--37132784 Score: 118
Period size: 28 Copynumber: 3.4 Consensus size: 28
37132681 ACTGCATTGT
37132691 ACTGATTACTGTATTGGGCTAAGGCTCAC
1 ACTG-TTACTGTATTGGGCTAAGGCTCAC
* * *
37132720 ATTGTTACTATATTGGGCCAAGGCTCAC
1 ACTGTTACTGTATTGGGCTAAGGCTCAC
** *
37132748 ACTGTTACTGTAAGGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCTCAC
37132776 ACTG-TACTG
1 ACTGTTACTG
37132785 ATACTGTATA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 5 0.09
28 48 0.86
29 3 0.05
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCTCAC
Found at i:37134746 original size:40 final size:40
Alignment explanation
Indices: 37134668--37134747 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
37134658 AAATTATTGA
* * *
37134668 ATGTTTGCACATACGTGCCCCTGATTGTACTTCGGTACCC
1 ATGTTTGCACATACATGCCCCTGATTGCACTTCAGTACCC
** *
37134708 ATGTTTGCACATACATGCCCCTTTTTGCACTTTAGTACCC
1 ATGTTTGCACATACATGCCCCTGATTGCACTTCAGTACCC
37134748 CTGAACGTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (40 bp):
ATGTTTGCACATACATGCCCCTGATTGCACTTCAGTACCC
Found at i:37135386 original size:11 final size:11
Alignment explanation
Indices: 37135367--37135396 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
37135357 CCTTAAGGCC
37135367 TTAGAAACACT
1 TTAGAAACACT
*
37135378 TTAGGAACACT
1 TTAGAAACACT
37135389 TTAGAAAC
1 TTAGAAAC
37135397 TACTCGAGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (11 bp):
TTAGAAACACT
Found at i:37155369 original size:18 final size:20
Alignment explanation
Indices: 37155341--37155393 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
37155331 AAGTTTAGGG
*
37155341 TTTAGAGTTTTTTCTAT-TT-
1 TTTA-AGTTTTTTATATATTC
37155360 TTTAAGTTTTTTATATATTC
1 TTTAAGTTTTTTATATATTC
37155380 TTT-AGTTTTTTATA
1 TTTAAGTTTTTTATA
37155394 ATTGTTTCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 11 0.35
19 17 0.55
20 3 0.10
ACGTcount: A:0.21, C:0.04, G:0.08, T:0.68
Consensus pattern (20 bp):
TTTAAGTTTTTTATATATTC
Found at i:37157527 original size:27 final size:27
Alignment explanation
Indices: 37157385--37157518 Score: 205
Period size: 27 Copynumber: 5.0 Consensus size: 27
37157375 ATAAATGATT
37157385 GAAATACCCCCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACC
* *
37157412 GAAATACTCTCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACC
*
37157439 GAAATACCCCTATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACC
* *
37157466 GAAATACCCCCGTAAGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACC
* *
37157493 AAAATACCCCCGTAGGGTAAAATGAC
1 GAAATACCCCCATAGGGTAAAATGAC
37157519 TGTTATACCT
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.41, C:0.23, G:0.19, T:0.17
Consensus pattern (27 bp):
GAAATACCCCCATAGGGTAAAATGACC
Found at i:37157739 original size:26 final size:26
Alignment explanation
Indices: 37157710--37157764 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
37157700 TTTTCCACAT
* * *
37157710 ATACTCTTACTAGCAGCTTTGCTGCA
1 ATACTATTACTAGCAACTTTGCTACA
* *
37157736 ATACTATTACTGGTAACTTTGCTACA
1 ATACTATTACTAGCAACTTTGCTACA
37157762 ATA
1 ATA
37157765 TTGGTGTGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (26 bp):
ATACTATTACTAGCAACTTTGCTACA
Found at i:37157913 original size:28 final size:28
Alignment explanation
Indices: 37157871--37157928 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
37157861 CACTATATTG
*
37157871 GTTACTGTATTGGGCTAAGGCCCACACT
1 GTTACTGTATCGGGCTAAGGCCCACACT
*
37157899 GTTATTGTATCGGGCTAAGGCCCACACT
1 GTTACTGTATCGGGCTAAGGCCCACACT
37157927 GT
1 GT
37157929 AGGGCTCAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (28 bp):
GTTACTGTATCGGGCTAAGGCCCACACT
Found at i:37159149 original size:46 final size:46
Alignment explanation
Indices: 37159082--37159175 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
37159072 GGTGATTTTG
37159082 ATTGTTTCAACAACTATGCAAGAAGCGATGATGTACTCCCTACAAC
1 ATTGTTTCAACAACTATGCAAGAAGCGATGATGTACTCCCTACAAC
37159128 ATTGTTTCAACAACTATGCAAGAAGCGATGATGTACTCCCTACAAC
1 ATTGTTTCAACAACTATGCAAGAAGCGATGATGTACTCCCTACAAC
37159174 AT
1 AT
37159176 CCATCAGTGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (46 bp):
ATTGTTTCAACAACTATGCAAGAAGCGATGATGTACTCCCTACAAC
Found at i:37164392 original size:37 final size:37
Alignment explanation
Indices: 37164332--37164403 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
37164322 GGTACTAAGG
* *
37164332 AAACTTGATAGTAGGGTCATCGCCAAAAAGGCATGGC
1 AAACATGATAATAGGGTCATCGCCAAAAAGGCATGGC
* *
37164369 AAACATGATAATAGGGTCGTCGCCAAGAAGGCATG
1 AAACATGATAATAGGGTCATCGCCAAAAAGGCATG
37164404 ACACACCAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (37 bp):
AAACATGATAATAGGGTCATCGCCAAAAAGGCATGGC
Found at i:37165347 original size:57 final size:58
Alignment explanation
Indices: 37165250--37165708 Score: 410
Period size: 57 Copynumber: 8.1 Consensus size: 58
37165240 GCCATTTCCA
* *
37165250 TAAAAGTG-AGCCTTTGTGGTTATCTCTG---AAAGGAAGCCTTTGTGGCTATCACTGT
1 TAAAAG-GAAGCCTTTGTGGTGATCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTGT
* *
37165305 T-AAAGGAAGCCTTTGCGGTGAACTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTGT
1 TAAAAGGAAGCCTTTGTGGTGATCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTGT
* *
37165362 T-AAAGGAAGCCTTTGCGGTGAACTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTG-
1 TAAAAGGAAGCCTTTGTGGTGATCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTGT
* * * * ** * *
37165418 --AAAGGAAGCCTTTGTGGTTATCTCTATTCAAAGG-ACCCTTTCCGACGATCTCTGT
1 TAAAAGGAAGCCTTTGTGGTGATCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTGT
* * * ** *
37165473 TAAAATGAAGCTTTTGTGGTGATCACCATTAAAAGGAAGCCTTTGTGGCGATCTCTGT
1 TAAAAGGAAGCCTTTGTGGTGATCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTGT
* * * * *
37165531 TAAAAGGAAGTCTTTATGGCGATCTCTGTT-AAAGGACGCCTTTGTGG-TATCTCTAT
1 TAAAAGGAAGCCTTTGTGGTGATCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTGT
* * * * ** * *
37165587 TAAAAGGATGCCTTTAT-GTCTATCTCTGTTAAAAGGACGTTTTTATTGCTATCTCTGT
1 TAAAAGGAAGCCTTTGTGGT-GATCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTGT
* * * * * * *
37165645 TAAAAGGATGCCTTTGTTGCT-ATCTCAGTT-AAATGAATGCC-TTGTGGCAAACTCTAT
1 TAAAAGGAAGCCTTTG-TGGTGATCTCTGTTAAAAGGAA-GCCTTTGTGGCTATCTCTGT
37165702 TAAAAGG
1 TAAAAGG
37165709 CTGCCTACAT
Statistics
Matches: 334, Mismatches: 56, Indels: 26
0.80 0.13 0.06
Matches are distributed among these distances:
53 1 0.00
54 36 0.11
55 31 0.09
56 31 0.09
57 162 0.49
58 71 0.21
59 1 0.00
60 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (58 bp):
TAAAAGGAAGCCTTTGTGGTGATCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTGT
Found at i:37165664 original size:29 final size:29
Alignment explanation
Indices: 37165250--37165708 Score: 394
Period size: 29 Copynumber: 16.2 Consensus size: 29
37165240 GCCATTTCCA
*
37165250 TAAAAGTG-AGCCTTTGTGGTTATCTCTG-
1 TAAAAG-GAAGCCTTTGTGGCTATCTCTGT
*
37165278 --AAAGGAAGCCTTTGTGGCTATCACTGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
* *
37165305 T-AAAGGAAGCCTTTGCGG-TGAACTCTGT
1 TAAAAGGAAGCCTTTGTGGCT-ATCTCTGT
37165333 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
* *
37165362 T-AAAGGAAGCCTTTGCGG-TGAACTCTGT
1 TAAAAGGAAGCCTTTGTGGCT-ATCTCTGT
37165390 TAAAAGGAAGCCTTTGTGGCTATCTCTG-
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
* *
37165418 --AAAGGAAGCCTTTGTGGTTATCTCTAT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
* * ** * *
37165445 TCAAAGG-ACCCTTTCCGACGATCTCTGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
* * * **
37165473 TAAAATGAAGCTTTTGTGG-TGATCACCAT
1 TAAAAGGAAGCCTTTGTGGCT-ATCTCTGT
*
37165502 TAAAAGGAAGCCTTTGTGGCGATCTCTGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
* * *
37165531 TAAAAGGAAGTCTTTATGGCGATCTCTGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
* *
37165560 T-AAAGGACGCCTTTGTGG-TATCTCTAT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
* * *
37165587 TAAAAGGATGCCTTTATGTCTATCTCTGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
* ** * *
37165616 TAAAAGGACGTTTTTATTGCTATCTCTGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
* * *
37165645 TAAAAGGATGCCTTTGTTGCTATCTCAGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGT
* * * *
37165674 T-AAATGAATGCC-TTGTGGCAAACTCTAT
1 TAAAAGGAA-GCCTTTGTGGCTATCTCTGT
37165702 TAAAAGG
1 TAAAAGG
37165709 CTGCCTACAT
Statistics
Matches: 346, Mismatches: 66, Indels: 37
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.00
26 46 0.13
27 10 0.03
28 111 0.32
29 176 0.51
30 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (29 bp):
TAAAAGGAAGCCTTTGTGGCTATCTCTGT
Found at i:37174154 original size:2 final size:2
Alignment explanation
Indices: 37174147--37174176 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
37174137 AACCAATTTC
37174147 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37174177 TACAATCACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37175263 original size:41 final size:41
Alignment explanation
Indices: 37175205--37175313 Score: 121
Period size: 41 Copynumber: 2.7 Consensus size: 41
37175195 CCCGATTCAA
* * * *
37175205 TTCACCGGCAATT-AGCCTGCTAGACTTAGAGTTTGAATTAT
1 TTCACCGGC-ATTAAGCCTGCTAGACTTAAAGTCTAAATTAC
* * *
37175246 TTCACCAGCATTAAGCCTGCTGGACATAAAGTCTAAATTAC
1 TTCACCGGCATTAAGCCTGCTAGACTTAAAGTCTAAATTAC
* *
37175287 ATCACCGGCCTTAAGCCTGCTAGACTT
1 TTCACCGGCATTAAGCCTGCTAGACTT
37175314 TAAGCCTGAA
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
40 3 0.05
41 52 0.95
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (41 bp):
TTCACCGGCATTAAGCCTGCTAGACTTAAAGTCTAAATTAC
Found at i:37181196 original size:16 final size:17
Alignment explanation
Indices: 37181165--37181197 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37181155 TACCATTTCA
*
37181165 TAACTAAATAACATTAT
1 TAACCAAATAACATTAT
37181182 TAACCAAAT-ACATTAT
1 TAACCAAATAACATTAT
37181198 ACTTGCTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (17 bp):
TAACCAAATAACATTAT
Found at i:37191972 original size:28 final size:29
Alignment explanation
Indices: 37191891--37192101 Score: 171
Period size: 29 Copynumber: 7.3 Consensus size: 29
37191881 TCATCGACCA
* *
37191891 ATGAAAAGGGATAGCTTCAGCTATCAAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* *
37191920 AAGAAAAGGGATAGCTTTGGCTATCGAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* * *
37191949 ATGAAAAGGG-TAGCTCCGGATATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* * * * * *
37191977 ATGAAACGGTACAG-TGACGACCATC-AAT
1 ATGAAAAGGGATAGCT-TCGGCTATCGAAT
* * * * *
37192005 AATGAAAAGGAAT-GGTGACGACCATCGAAT
1 -ATGAAAAGGGATAGCT-TCGGCTATCGAAT
37192035 ATGAAAAGGGATAGCTTCGGCTATCGAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
* *
37192064 ATGAAAAGGGATAGCTTTGACTATCG-AT
1 ATGAAAAGGGATAGCTTCGGCTATCGAAT
37192092 AATGAAAAGG
1 -ATGAAAAGG
37192102 AATGGTGATG
Statistics
Matches: 148, Mismatches: 27, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
28 28 0.19
29 115 0.78
30 5 0.03
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGGCTATCGAAT
Found at i:37192068 original size:58 final size:59
Alignment explanation
Indices: 37191994--37192220 Score: 191
Period size: 58 Copynumber: 3.9 Consensus size: 59
37191984 GGTACAGTGA
* *
37191994 CGACCATC-AATAATGAAAAGGAATGGTGACGACCATCGAAT-ATGAAAAGGGATAGCTT
1 CGACCATCGAAT-ATGAAAAGGGATGGTGATGACCATCGAATAATGAAAAGGGATAGCTT
* * * * * * *
37192052 CGGCTATCGAATATGAAAAGGGATAGCT-TTGACTATCG-ATAATGAAAAGGAAT-GGTGAT
1 CGACCATCGAATATGAAAAGGGAT-GGTGATGACCATCGAATAATGAAAAGGGATAGCT--T
* *
37192111 -GACCATC-AACTATGAAAAGGGATGGTGATGACCATCGATTAATGAAAAGGGATAGTTT
1 CGACCATCGAA-TATGAAAAGGGATGGTGATGACCATCGAATAATGAAAAGGGATAGCTT
* ** * ** *
37192169 CGACCATGGAATATGAAAAGTTATGATTTTGATCATCGAAT-ATGAAAAGGGA
1 CGACCATCGAATATGAAAAGGGATGGTGATGACCATCGAATAATGAAAAGGGA
37192221 CAGGTGAGAC
Statistics
Matches: 133, Mismatches: 25, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
57 8 0.06
58 73 0.55
59 48 0.36
60 4 0.03
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (59 bp):
CGACCATCGAATATGAAAAGGGATGGTGATGACCATCGAATAATGAAAAGGGATAGCTT
Found at i:37192095 original size:87 final size:87
Alignment explanation
Indices: 37191942--37192133 Score: 246
Period size: 87 Copynumber: 2.2 Consensus size: 87
37191932 AGCTTTGGCT
* * *
37191942 ATCGAATATGAAAAGGG-TAGCTCCGGATATCGATTATGAAACGGTACAGTGACGACCATCAATA
1 ATCGAATATGAAAAGGGATAGCTCCGGATATCGAATATGAAAAGGGACAGTGACGACCATCAATA
37192006 ATGAAAAGGAATGGTGACGACC
66 ATGAAAAGGAATGGTGACGACC
* * * ** * *
37192028 ATCGAATATGAAAAGGGATAGCTTCGGCTATCGAATATGAAAAGGGATAGCT-TTGACTATCGAT
1 ATCGAATATGAAAAGGGATAGCTCCGGATATCGAATATGAAAAGGGACAG-TGACGACCATCAAT
*
37192092 AATGAAAAGGAATGGTGATGACC
65 AATGAAAAGGAATGGTGACGACC
37192115 ATC-AACTATGAAAAGGGAT
1 ATCGAA-TATGAAAAGGGAT
37192134 GGTGATGACC
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
86 19 0.21
87 72 0.78
88 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.22
Consensus pattern (87 bp):
ATCGAATATGAAAAGGGATAGCTCCGGATATCGAATATGAAAAGGGACAGTGACGACCATCAATA
ATGAAAAGGAATGGTGACGACC
Found at i:37192148 original size:87 final size:88
Alignment explanation
Indices: 37192003--37192165 Score: 226
Period size: 87 Copynumber: 1.9 Consensus size: 88
37191993 ACGACCATCA
* *
37192003 ATAATGAAAAGGAATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCGGCTATCGAAT-ATG
1 ATAATGAAAAGGAATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCGACCATCGAATAATG
37192067 AAAAGGGATAGCTTTGACTATCG
66 AAAAGGGATAGCTTTGACTATCG
* * *
37192090 ATAATGAAAAGGAATGGTGATGACCATC-AACTATGAAAAGGGAT-GGTGAT-GACCATCGATTA
1 ATAATGAAAAGGAATGGTGACGACCATCGAA-TATGAAAAGGGATAGCT--TCGACCATCGAATA
37192152 ATGAAAAGGGATAG
63 ATGAAAAGGGATAG
37192166 TTTCGACCAT
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
86 4 0.06
87 48 0.72
88 15 0.22
ACGTcount: A:0.40, C:0.11, G:0.27, T:0.22
Consensus pattern (88 bp):
ATAATGAAAAGGAATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCGACCATCGAATAATG
AAAAGGGATAGCTTTGACTATCG
Found at i:37192214 original size:117 final size:116
Alignment explanation
Indices: 37191917--37192234 Score: 321
Period size: 116 Copynumber: 2.7 Consensus size: 116
37191907 TCAGCTATCA
* * * * ** *
37191917 AATAAGAAAAGGGATAGCTTTGGCTATCGAATATGAAAAGGG-TAGCTCCGGA-TATCGATTATG
1 AATATGAAAAGGGATAGCTTCGACCATCGAATATGAAAAGGGATAGCT-TTGACTATCGATAATG
* *
37191980 AAACGGTACA-GTGACGACCATCAATAATGAAAAGGAATGGTGACGACCATCG
65 AAAAGGGACAGGTGA-GACCATCAATAATGAAAAGGAATGGTGACGACCATCG
* *
37192032 AATATGAAAAGGGATAGCTTCGGCTATCGAATATGAAAAGGGATAGCTTTGACTATCGATAATGA
1 AATATGAAAAGGGATAGCTTCGACCATCGAATATGAAAAGGGATAGCTTTGACTATCGATAATGA
* *
37192097 AAA-GGA-ATGGTGATGACCATCAACT-ATGAAAAGGGATGGTGATGACCATCG
66 AAAGGGACA-GGTGA-GACCATCAA-TAATGAAAAGGAATGGTGACGACCATCG
* * * ** *
37192148 ATTAATGAAAAGGGATAGTTTCGACCATGGAATATGAAAAGTTAT-GATTTTGA-TCATCGA-AT
1 AAT-ATGAAAAGGGATAGCTTCGACCATCGAATATGAAAAGGGATAG-CTTTGACT-ATCGATA-
37192210 ATGAAAAGGGACAGGTGAGACCATC
62 ATGAAAAGGGACAGGTGAGACCATC
37192235 GTTTAGCACA
Statistics
Matches: 174, Mismatches: 18, Indels: 20
0.82 0.08 0.09
Matches are distributed among these distances:
114 1 0.01
115 44 0.25
116 60 0.34
117 60 0.34
118 8 0.05
119 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (116 bp):
AATATGAAAAGGGATAGCTTCGACCATCGAATATGAAAAGGGATAGCTTTGACTATCGATAATGA
AAAGGGACAGGTGAGACCATCAATAATGAAAAGGAATGGTGACGACCATCG
Found at i:37192234 original size:29 final size:28
Alignment explanation
Indices: 37191990--37192235 Score: 124
Period size: 29 Copynumber: 8.4 Consensus size: 28
37191980 AAACGGTACA
37191990 GTGACGACCATC-AATAATGAAAA-GGAATG
1 GTGA-GACCATCGAAT-ATGAAAAGGGAA-G
37192019 GTGACGACCATCGAATATGAAAAGGGATAG
1 GTGA-GACCATCGAATATGAAAAGGGA-AG
* ** * *
37192049 CTTCGGCTATCGAATATGAAAAGGGATAG
1 GTGAGACCATCGAATATGAAAAGGGA-AG
* ** *
37192078 CTTTGACTATCG-ATAATGAAAA-GGAATG
1 GTGAGACCATCGAAT-ATGAAAAGGGAA-G
*
37192106 GTGATGACCATC-AACTATGAAAAGGGATG
1 GTGA-GACCATCGAA-TATGAAAAGGGAAG
*
37192135 GTGATGACCATCGATTAATGAAAAGGGATAG
1 GTGA-GACCATCGAAT-ATGAAAAGGGA-AG
* ** * ** *
37192166 TTTCGACCATGGAATATGAAAAGTTATG
1 GTGAGACCATCGAATATGAAAAGGGAAG
* ** *
37192194 ATTTTGATCATCGAATATGAAAAGGGACAG
1 -GTGAGACCATCGAATATGAAAAGGGA-AG
37192224 GTGAGACCATCG
1 GTGAGACCATCG
37192236 TTTAGCACAC
Statistics
Matches: 171, Mismatches: 32, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
27 1 0.01
28 8 0.05
29 125 0.73
30 34 0.20
31 3 0.02
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (28 bp):
GTGAGACCATCGAATATGAAAAGGGAAG
Found at i:37197441 original size:29 final size:29
Alignment explanation
Indices: 37197399--37197520 Score: 181
Period size: 29 Copynumber: 4.2 Consensus size: 29
37197389 TCATCGACCA
*
37197399 ATGAAAAGGGATAGCTTCGGTTATCAAAT
1 ATGAAAAGGGATAGCTTCGGCTATCAAAT
* * *
37197428 ATGAAAAGGGATAGCTTCAGTTATCGAAT
1 ATGAAAAGGGATAGCTTCGGCTATCAAAT
37197457 ATGAAAAGGGATAGCTTCGGCTATCAAAT
1 ATGAAAAGGGATAGCTTCGGCTATCAAAT
* * *
37197486 ATGAAAAGGAATAGCTCCGGCTATCAATT
1 ATGAAAAGGGATAGCTTCGGCTATCAAAT
37197515 ATGAAA
1 ATGAAA
37197521 TGCGATGGTG
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 85 1.00
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.25
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGGCTATCAAAT
Found at i:37197550 original size:87 final size:87
Alignment explanation
Indices: 37197483--37197753 Score: 389
Period size: 87 Copynumber: 3.1 Consensus size: 87
37197473 TCGGCTATCA
* * * * *
37197483 AATATGAAAAGGAATAGCTCCGGCTATCAATTATGAAATGCGATGGTGACGACCATCGACAACGA
1 AATATGAAAAGGGATAGCTTCGGCTATCGATTATGAAATGGGATGGTGACGACCATCGACAACAA
37197548 AAAGGGATGGTGACGACCATCG
66 AAAGGGATGGTGACGACCATCG
* * * *
37197570 AATGTGAAAAGGGATAGCTTCAGCTATCGATTATGAAATGGGACGGTGACGACAATCGACAACAA
1 AATATGAAAAGGGATAGCTTCGGCTATCGATTATGAAATGGGATGGTGACGACCATCGACAACAA
37197635 AAAGGGATGGTGACGACCATCG
66 AAAGGGATGGTGACGACCATCG
* * * * * *
37197657 AATGTGAAAAGGGATAGCTTCGGCTATTGATAATGAAAAGGGATGGTGACGACCATCAACTACAA
1 AATATGAAAAGGGATAGCTTCGGCTATCGATTATGAAATGGGATGGTGACGACCATCGACAACAA
**
37197722 AAAGGGATGGTTTCGACCATCG
66 AAAGGGATGGTGACGACCATCG
37197744 AATATGAAAA
1 AATATGAAAA
37197754 AGGACGGTTA
Statistics
Matches: 164, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 164 1.00
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.20
Consensus pattern (87 bp):
AATATGAAAAGGGATAGCTTCGGCTATCGATTATGAAATGGGATGGTGACGACCATCGACAACAA
AAAGGGATGGTGACGACCATCG
Found at i:37197559 original size:29 final size:29
Alignment explanation
Indices: 37197515--37197772 Score: 141
Period size: 29 Copynumber: 8.9 Consensus size: 29
37197505 GCTATCAATT
* *
37197515 ATGAAATGCGATGGTGACGACCATCGACA
1 ATGAAAAGGGATGGTGACGACCATCGACA
*
37197544 ACGAAAAGGGATGGTGACGACCATCGA-A
1 ATGAAAAGGGATGGTGACGACCATCGACA
* * * * **
37197572 TGTGAAAAGGGATAGCT-TC-AGCTATCGATT
1 -ATGAAAAGGGAT-GGTGACGA-CCATCGACA
* * *
37197602 ATGAAATGGGACGGTGACGACAATCGACA
1 ATGAAAAGGGATGGTGACGACCATCGACA
**
37197631 ACAAAAAGGGATGGTGACGACCATCGA-A
1 ATGAAAAGGGATGGTGACGACCATCGACA
* * * * * * *
37197659 TGTGAAAAGGGATAGCT-TCGGCTATTGATA
1 -ATGAAAAGGGAT-GGTGACGACCATCGACA
* *
37197689 ATGAAAAGGGATGGTGACGACCATCAACT
1 ATGAAAAGGGATGGTGACGACCATCGACA
** **
37197718 ACAAAAAGGGATGGTTTCGACCATCGA-A
1 ATGAAAAGGGATGGTGACGACCATCGACA
* * * *
37197746 TATGAAAAAGGACGGTTATGACCATCG
1 -ATGAAAAGGGATGGTGACGACCATCG
37197773 TTTAGCACAC
Statistics
Matches: 167, Mismatches: 51, Indels: 22
0.70 0.21 0.09
Matches are distributed among these distances:
28 7 0.04
29 154 0.92
30 6 0.04
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.19
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGACGACCATCGACA
Found at i:37200069 original size:17 final size:16
Alignment explanation
Indices: 37200029--37200071 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
37200019 TTACAAGTAT
37200029 AGATATGAATTACATG
1 AGATATGAATTACATG
* *
37200045 GGAAATGATATTACATG
1 AGATATGA-ATTACATG
*
37200062 ATATATGAAT
1 AGATATGAAT
37200072 GTATGAAATG
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.44, C:0.05, G:0.19, T:0.33
Consensus pattern (16 bp):
AGATATGAATTACATG
Found at i:37213908 original size:25 final size:25
Alignment explanation
Indices: 37213880--37213984 Score: 92
Period size: 25 Copynumber: 4.2 Consensus size: 25
37213870 TCCAGCTTTT
* *
37213880 ATGAGCTTCCTGATACTCAGCTCAA
1 ATGAGCTTCCTGTTATTCAGCTCAA
* *
37213905 ATGAGCTT-CTCGTTATTCAACTCAC
1 ATGAGCTTCCT-GTTATTCAGCTCAA
37213930 ATGAGCTTTCC-GTTATTCAGCTCAA
1 ATGAGC-TTCCTGTTATTCAGCTCAA
* * *
37213955 AGGAGCTTACC-GTT-TACAGCTCAT
1 ATGAGCTT-CCTGTTATTCAGCTCAA
37213979 ATGAGC
1 ATGAGC
37213985 ATACATGAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 9
0.78 0.12 0.11
Matches are distributed among these distances:
24 17 0.26
25 46 0.70
26 2 0.03
27 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCTGTTATTCAGCTCAA
Found at i:37215026 original size:12 final size:12
Alignment explanation
Indices: 37215009--37215041 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
37214999 CAGGGAGTTA
37215009 CACGGGCACGAG
1 CACGGGCACGAG
37215021 CACGGGCACGAG
1 CACGGGCACGAG
37215033 CACGGGCAC
1 CACGGGCAC
37215042 AGGCTGAGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.36, G:0.39, T:0.00
Consensus pattern (12 bp):
CACGGGCACGAG
Found at i:37217232 original size:27 final size:27
Alignment explanation
Indices: 37217188--37217280 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 27
37217178 AACATGCCAA
* * *
37217188 AAGAAATGGAAG-TCTTTGTGGCAATCC
1 AAGAAATGAAAGCT-TTTGTGGAAATCT
*
37217215 AAGAAATGAAAGCTTTTGTGGAAATTT
1 AAGAAATGAAAGCTTTTGTGGAAATCT
* * **
37217242 AAGAAATGGAAGCCTTTGTGGTGATCT
1 AAGAAATGAAAGCTTTTGTGGAAATCT
37217269 AAGAAATGAAAG
1 AAGAAATGAAAG
37217281 TCGTGTGGCA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.27
Consensus pattern (27 bp):
AAGAAATGAAAGCTTTTGTGGAAATCT
Found at i:37221603 original size:22 final size:22
Alignment explanation
Indices: 37221565--37221608 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
37221555 AATTTGGATT
*
37221565 GATTCGATTTTCAAATTTTATA
1 GATTCGATTTTCAAATTATATA
*
37221587 GATTTGATATTTC-AATTATATA
1 GATTCGAT-TTTCAAATTATATA
37221609 CCATGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (22 bp):
GATTCGATTTTCAAATTATATA
Found at i:37222770 original size:4 final size:4
Alignment explanation
Indices: 37222761--37223104 Score: 634
Period size: 4 Copynumber: 86.0 Consensus size: 4
37222751 ATTATAAAAG
*
37222761 ATGT ATGT ATGT ATGT ATGC ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
37222809 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * *
37222857 ATGT ATGT ATGT CTAT ATGT ATGT ATGT ATGT ATAT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
37222905 ATGT GTGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
37222953 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT GTGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
37223001 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
37223049 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
37223097 ATGT ATGT
1 ATGT ATGT
37223105 NNNNNNNNNN
Statistics
Matches: 328, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 328 1.00
ACGTcount: A:0.25, C:0.01, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:37234204 original size:4 final size:4
Alignment explanation
Indices: 37234195--37234342 Score: 296
Period size: 4 Copynumber: 37.0 Consensus size: 4
37234185 NNNNNNNNNN
37234195 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
37234243 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
37234291 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
37234339 GTAT
1 GTAT
37234343 ATGAAAATTA
Statistics
Matches: 144, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 144 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:37234497 original size:3 final size:3
Alignment explanation
Indices: 37234489--37234528 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
37234479 TAAATGAGTA
37234489 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
37234529 CAAGATTAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37236409 original size:16 final size:16
Alignment explanation
Indices: 37236388--37236422 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
37236378 AATTTATTGC
37236388 CAATGTTTGATTGCTA
1 CAATGTTTGATTGCTA
37236404 CAATGTTTGATTGCTA
1 CAATGTTTGATTGCTA
37236420 CAA
1 CAA
37236423 CAAGAGTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (16 bp):
CAATGTTTGATTGCTA
Found at i:37244429 original size:52 final size:53
Alignment explanation
Indices: 37244351--37244461 Score: 206
Period size: 52 Copynumber: 2.1 Consensus size: 53
37244341 AACAAACTAC
37244351 AAATTTAATTGCAGCTTAAACATGTTAGA-TCATACTAAATGCAAAAGGTGAG
1 AAATTTAATTGCAGCTTAAACATGTTAGATTCATACTAAATGCAAAAGGTGAG
*
37244403 AAATTTAATTGCAGCTTAAACATGTTAGATTCATACTAAATGCGAAAGGTGAG
1 AAATTTAATTGCAGCTTAAACATGTTAGATTCATACTAAATGCAAAAGGTGAG
37244456 AAATTT
1 AAATTT
37244462 TTCAGTTTCC
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 29 0.51
53 28 0.49
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (53 bp):
AAATTTAATTGCAGCTTAAACATGTTAGATTCATACTAAATGCAAAAGGTGAG
Found at i:37245149 original size:3 final size:3
Alignment explanation
Indices: 37245134--37245216 Score: 112
Period size: 3 Copynumber: 27.7 Consensus size: 3
37245124 CATTATTGGT
* ** *
37245134 ATC ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC CGC ATC CTC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* *
37245182 ATC ATC ATC ATC ATC ATC AGC ATC ATC AGC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
37245217 ATGATCCACT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.31, C:0.34, G:0.04, T:0.31
Consensus pattern (3 bp):
ATC
Found at i:37260353 original size:25 final size:25
Alignment explanation
Indices: 37260325--37260374 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
37260315 CAGGTAAGGC
*
37260325 TCCTTCTGCTTCTTCCGTTTTTCAT
1 TCCTTCTGCTTCTTCCGTTCTTCAT
* *
37260350 TCCTTTTTCTTCTTCCGTTCTTCAT
1 TCCTTCTGCTTCTTCCGTTCTTCAT
37260375 CTTCTCTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.04, C:0.32, G:0.06, T:0.58
Consensus pattern (25 bp):
TCCTTCTGCTTCTTCCGTTCTTCAT
Found at i:37263844 original size:43 final size:43
Alignment explanation
Indices: 37263783--37264179 Score: 514
Period size: 43 Copynumber: 9.3 Consensus size: 43
37263773 TTTTAGAAAT
* * *
37263783 AAACGCCGCTATAGACCATGACCTTTAGCAGCGCTTTTCCCAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCTCAC
* *
37263826 AAACGCCGCTATAGACCATGACCTTTAGCGGCGC-TTTCCCAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCTCAC
*
37263868 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCTCAC
*
37263911 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCTCAC
* *
37263954 AAACGCCGCTATAGACCATTACCTTTAGCGGCACTTTTATCAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCTCAC
* *
37263997 AAACGCCGCTATAGACCATTACCTTTAGCGGCACTTTTATCAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCTCAC
* * * *
37264040 AAACGCCGCTAAAGACCATTACCTTTAGTGGCGCTTCTCCCAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCTCAC
* * ** * *
37264083 AAACGTCGTTATAGGTCATGACTTTTAGCGGCGCTTTT-TCGTAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCTC--AC
* * *
37264127 AAACGCCGCTATAGA--ATTGGCCTTTAGCAGCGCTTTTCACAC
1 AAACGCCGCTATAGACCATT-ACCTTTAGCGGCGCTTTTCTCAC
*
37264169 AAACGTCGCTA
1 AAACGCCGCTA
37264180 AAAGCATCTT
Statistics
Matches: 319, Mismatches: 30, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
42 56 0.18
43 248 0.78
44 15 0.05
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCTCAC
Found at i:37264298 original size:17 final size:14
Alignment explanation
Indices: 37264263--37264291 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37264253 GGATAAATAC
37264263 AAATTATTATTTAA
1 AAATTATTATTTAA
37264277 AAATTATTATTTAA
1 AAATTATTATTTAA
37264291 A
1 A
37264292 TTAAATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAATTATTATTTAA
Found at i:37264515 original size:43 final size:43
Alignment explanation
Indices: 37264467--37264557 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
37264457 ACATATGCAA
** * * *
37264467 GGTAATAAATTATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
*
37264510 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
37264553 -GTAAT
1 GGTAAT
37264558 GAACTCAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.36
Consensus pattern (43 bp):
GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:37266233 original size:13 final size:13
Alignment explanation
Indices: 37266215--37266241 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37266205 ATGTAGCCCA
37266215 AGTGCTGTGCGAC
1 AGTGCTGTGCGAC
37266228 AGTGCTGTGCGAC
1 AGTGCTGTGCGAC
37266241 A
1 A
37266242 AAGCACCACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.22, G:0.37, T:0.22
Consensus pattern (13 bp):
AGTGCTGTGCGAC
Done.