Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60982465
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 868082 characters in sequence are not A, C, G, or T
File 148 of 204
Found at i:44594024 original size:116 final size:116
Alignment explanation
Indices: 44593821--44594085 Score: 347
Period size: 116 Copynumber: 2.3 Consensus size: 116
44593811 TCTGAATTAT
* * * **
44593821 TGCTCAATCAAGCAAGACTTACTAAATATACTGAATGCTGCTCAATTGAGCAAAATCTACTGAAC
1 TGCTCAATCGAGCAAAACTTACTAAACATACTGAATGCTGCTCAATCAAGCAAAATCTACTGAAC
*
44593886 ATACTGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATACT-AAATGC
66 ATACGGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATACTGAAATGC
* *
44593936 TGCTCAATCGAGCAAAA-TCTACTAAACGTACTGAATTGTTGCTCAATCAAGCAAAA-CTTACTG
1 TGCTCAATCGAGCAAAACT-TACTAAACATACTGAA-TGCTGCTCAATCAAGCAAAATC-TACTG
* * * *
44593999 AATATACGGAATTGTTGCTCAATCGAGCAAAATTTACTGAATATACTGAATTGT
63 AACATACGGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATACTGAAATGC
* * *
44594053 TGCTCAATCGAGAAAAACTTACTGAATATACTG
1 TGCTCAATCGAGCAAAACTTACTAAACATACTG
44594086 TGTAATACCC
Statistics
Matches: 129, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
114 1 0.01
115 30 0.23
116 66 0.51
117 31 0.24
118 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.29
Consensus pattern (116 bp):
TGCTCAATCGAGCAAAACTTACTAAACATACTGAATGCTGCTCAATCAAGCAAAATCTACTGAAC
ATACGGAATTGTTGCTCAATCGAGCAAAACTTACTGAATATACTGAAATGC
Found at i:44594249 original size:19 final size:19
Alignment explanation
Indices: 44594223--44594307 Score: 116
Period size: 19 Copynumber: 4.5 Consensus size: 19
44594213 AGGGATATGC
*
44594223 AATCTTAGATATAATATAT
1 AATCTTAGATATGATATAT
* **
44594242 AATATTAGATATGATATGC
1 AATCTTAGATATGATATAT
44594261 AATCTTAGATATGATATAT
1 AATCTTAGATATGATATAT
**
44594280 AATCTTAGATATGATATGC
1 AATCTTAGATATGATATAT
44594299 AATCTTAGA
1 AATCTTAGA
44594308 AGATATGATT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 57 1.00
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (19 bp):
AATCTTAGATATGATATAT
Found at i:44594261 original size:38 final size:38
Alignment explanation
Indices: 44594216--44594307 Score: 166
Period size: 38 Copynumber: 2.4 Consensus size: 38
44594206 AATATTCAGG
44594216 GATATGCAATCTTAGATATAATATATAATATTAGATAT
1 GATATGCAATCTTAGATATAATATATAATATTAGATAT
* *
44594254 GATATGCAATCTTAGATATGATATATAATCTTAGATAT
1 GATATGCAATCTTAGATATAATATATAATATTAGATAT
44594292 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
44594308 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (38 bp):
GATATGCAATCTTAGATATAATATATAATATTAGATAT
Found at i:44594333 original size:22 final size:21
Alignment explanation
Indices: 44594216--44594333 Score: 90
Period size: 19 Copynumber: 5.9 Consensus size: 21
44594206 AATATTCAGG
*
44594216 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* * *
44594235 AATATATAATATT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
44594254 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
44594273 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
44594292 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
44594314 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
44594334 TTAATTTGTA
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
19 58 0.72
22 12 0.15
23 11 0.14
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.39
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:44601211 original size:45 final size:45
Alignment explanation
Indices: 44601074--44601218 Score: 138
Period size: 45 Copynumber: 3.3 Consensus size: 45
44601064 ACAGATTAGT
* *
44601074 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATC
* * * * * * *
44601119 GAA-A-A-CAAAGTTTTGCCTTCCT-CGGTTG-TAGTGGAGCAGGTT
1 GAAGATAGCAGA-TCTTGCCTTCCTGC-ATTGACAGTGAAGCAGATC
*
44601161 AAAGATAGCAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATC
*
44601206 GAAGATGGCAGAT
1 GAAGATAGCAGAT
44601219 TTTACCTCCT
Statistics
Matches: 74, Mismatches: 19, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
42 15 0.20
43 15 0.20
44 16 0.22
45 28 0.38
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (45 bp):
GAAGATAGCAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATC
Found at i:44601812 original size:132 final size:132
Alignment explanation
Indices: 44601193--44601828 Score: 1042
Period size: 132 Copynumber: 4.8 Consensus size: 132
44601183 CTGCATTGAC
* * *
44601193 AGTGAAGCAGATCGAAGATGGCAGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * * *
44601258 GTAATTCTACTTCCCTGGAAAATAGTGGAATAGATTGAATATTTAAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
44601323 GT
131 GT
*
44601325 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
*
44601390 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
44601455 GT
131 GT
* * * *
44601457 AGTGGAGCATATCGAAGATGGCAGATTTTACCTCCCTGTGGTTCCAGCGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* *
44601522 GTAATTCTACTTCCCTGAACAACAGTGGAATAGATTGAAGATTTTAGGTCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
44601587 GT
131 GT
* *
44601589 AGTGGAGCAGATCGAAGATGGCGGATTTTACCACCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
*
44601654 GTAATTCTACTTCCTTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
44601719 GT
131 GT
44601721 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * * *
44601786 GTAA-TCATA-TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
66 GTAATTC-TACT-TCCCTGGACAACAGTGGAATAGATTGAAGATT
44601829 GTAAGTCCTA
Statistics
Matches: 470, Mismatches: 32, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
131 3 0.01
132 467 0.99
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
GT
Found at i:44602178 original size:19 final size:19
Alignment explanation
Indices: 44602154--44602264 Score: 177
Period size: 19 Copynumber: 5.8 Consensus size: 19
44602144 AATCTTCAGG
44602154 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
44602173 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
44602192 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
44602211 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
44602230 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
44602249 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
44602265 AGATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 82 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:44602204 original size:38 final size:38
Alignment explanation
Indices: 44602161--44602264 Score: 199
Period size: 38 Copynumber: 2.7 Consensus size: 38
44602151 AGGGATATGC
44602161 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
44602199 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
44602237 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
44602265 AGATATGATT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.38
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:44602290 original size:22 final size:21
Alignment explanation
Indices: 44602154--44602290 Score: 114
Period size: 19 Copynumber: 6.9 Consensus size: 21
44602144 AATCTTCAGG
*
44602154 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
44602173 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
44602192 AATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
44602211 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
44602230 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
44602249 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
44602271 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
44602291 TTAATTTGTA
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
19 79 0.77
22 12 0.12
23 11 0.11
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.39
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:44612300 original size:133 final size:136
Alignment explanation
Indices: 44612044--44612434 Score: 504
Period size: 133 Copynumber: 2.9 Consensus size: 136
44612034 GGTCATTACA
* * *
44612044 CTACTCTC--AACAGTTTGCTGATTTATGATCGCAACTGATATCATTAAAGCTCACTGATTTATG
1 CTACTCTCTTAACAGTTTGTTGATTTACGATCGCAACTGATATCATTAAAGCTCGCTGATTTATG
*
44612107 ATCACGGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTAGAATTCGTTGATTTACGAT
66 ATCACGGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTAGAGTTCGTTGATTTACGAT
44612172 CATGA-
131 CATGAC
* * *
44612177 CT-C-CTCTTAACAGTTTTTTGATTTACGATCGCAACTGATATCATTAAAGCTCGTTGATTTACG
1 CTACTCTCTTAACAGTTTGTTGATTTACGATCGCAACTGATATCATTAAAGCTCGCTGATTTATG
* * ** *
44612240 ATCACAGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTTGAGTTTTTTTATTTACGAT
66 ATCACGGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTAGAGTTCGTTGATTTACGAT
44612305 CATGACTCC
131 CATGA---C
* * *
44612314 TCTCGACTCTTCTTAGCAGTTTGTTGATTTACGATCTCAGCTGATATCATTAAAGCTCGCTGATT
1 -CT--ACTC-TCTTAACAGTTTGTTGATTTACGATCGCAACTGATATCATTAAAGCTCGCTGATT
* * * * *
44612379 TATGATCACGGTTTGAGTTCATTAATTTACGATAATAAACAATTCATCTAGAGTTC
62 TATGATCACGGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTAGAGTTC
44612435 ACAAATTTAC
Statistics
Matches: 220, Mismatches: 26, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
131 3 0.01
132 1 0.00
133 115 0.52
138 2 0.01
141 1 0.00
142 1 0.00
143 97 0.44
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (136 bp):
CTACTCTCTTAACAGTTTGTTGATTTACGATCGCAACTGATATCATTAAAGCTCGCTGATTTATG
ATCACGGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTAGAGTTCGTTGATTTACGAT
CATGAC
Found at i:44612433 original size:143 final size:143
Alignment explanation
Indices: 44612175--44612433 Score: 392
Period size: 143 Copynumber: 1.8 Consensus size: 143
44612165 TTACGATCAT
* *
44612175 GACTCCTCTTAACAGTTTTTTGATTTACGATCGCAACTGATATCATTAAAGCTCGTTGATTTACG
1 GACTCCTCTTAACAGTTTGTTGATTTACGATCGCAACTGATATCATTAAAGCTCGCTGATTTACG
* * * *
44612240 ATCACAGCTTAAGTTCATTGATTTACGATCATGAACAATTCATCTTGAGTTTTTTTATTTACGAT
66 ATCACAGCTTAAGTTCATTAATTTACGATAATAAACAATTCATCTAGAGTTTTTTTATTTACGAT
44612305 CATGACTCCTCTC
131 CATGACTCCTCTC
* * * * *
44612318 GACTCTTCTTAGCAGTTTGTTGATTTACGATCTCAGCTGATATCATTAAAGCTCGCTGATTTATG
1 GACTCCTCTTAACAGTTTGTTGATTTACGATCGCAACTGATATCATTAAAGCTCGCTGATTTACG
* * *
44612383 ATCACGGTTTGAGTTCATTAATTTACGATAATAAACAATTCATCTAGAGTT
66 ATCACAGCTTAAGTTCATTAATTTACGATAATAAACAATTCATCTAGAGTT
44612434 CACAAATTTA
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
143 102 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (143 bp):
GACTCCTCTTAACAGTTTGTTGATTTACGATCGCAACTGATATCATTAAAGCTCGCTGATTTACG
ATCACAGCTTAAGTTCATTAATTTACGATAATAAACAATTCATCTAGAGTTTTTTTATTTACGAT
CATGACTCCTCTC
Found at i:44612521 original size:98 final size:99
Alignment explanation
Indices: 44612340--44612546 Score: 245
Period size: 98 Copynumber: 2.1 Consensus size: 99
44612330 CAGTTTGTTG
* * * * * *
44612340 ATTTACGATCTCAGCTGATATCATTAAAGCTCGCTGATTTATGATCACGGTTTGAGTTCATTAAT
1 ATTTACGATCGCAACTGATATCATTAAAGCTCACTGATTTACGATCACGGCTTAAGTTCATTAAT
*
44612405 TTACGATAATAAACAATTCATCTAGAGTTCACAA
66 TTACGATAATAAACAATTCATCTAAAGTTCACAA
* * * * *
44612439 ATTTACGATCGCAACTGATATCATTAAAG-TCATTGATTTACGATCATGGCTTAATTTTATTGAT
1 ATTTACGATCGCAACTGATATCATTAAAGCTCACTGATTTACGATCACGGCTTAAGTTCATTAAT
* * * * **
44612503 TTATGATCATGAACAATTCATTTAAAGTTCACTG
66 TTACGATAATAAACAATTCATCTAAAGTTCACAA
44612537 ATTTACGATC
1 ATTTACGATC
44612547 ACGACTCCTT
Statistics
Matches: 90, Mismatches: 18, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
98 63 0.70
99 27 0.30
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.38
Consensus pattern (99 bp):
ATTTACGATCGCAACTGATATCATTAAAGCTCACTGATTTACGATCACGGCTTAAGTTCATTAAT
TTACGATAATAAACAATTCATCTAAAGTTCACAA
Found at i:44612634 original size:133 final size:132
Alignment explanation
Indices: 44612439--44612853 Score: 476
Period size: 133 Copynumber: 3.1 Consensus size: 132
44612429 GAGTTCACAA
* ** * * *
44612439 ATTTACGATCGCAACTGATATCATTAAAG-TCATTGATTTACGATCATGGCTTAATTTTATTGAT
1 ATTTACGATCGCAACTGATAACATTAAAGCTCGCTGATTTACGATCA-CGCTTAAGTTAATTGAT
* * * *
44612503 TTATGATCATGAACAATTCATTTAAAGTTCACTGATTTACGATCACGACTCCTTTTAACAGTTTA
65 TTACGATCATGAACAATTCATTTAGAGTTCGCTGATTTACGATCACGACTCCTTTTAACAGTTTG
*
44612568 CTG
130 TTG
* * * * *
44612571 ATTTACAATCGCTATTGATAACATTAAAGCTCGCTGATTTACGATCACAGCTTAAGCTCATTGAT
1 ATTTACGATCGCAACTGATAACATTAAAGCTCGCTGATTTACGATCAC-GCTTAAGTTAATTGAT
* * * * * *
44612636 TTACGATCATGAACAATTCATCTAGAGTTCGCTAATTTACAATCACGACTCCTTTTGATAGTTCG
65 TTACGATCATGAACAATTCATTTAGAGTTCGCTGATTTACGATCACGACTCCTTTTAACAGTTTG
44612701 TTG
130 TTG
* * *
44612704 ATTTACGATCGCAACTGATATA-ATCAAAGCTCGCT-AGTTTACGATCACGATTTCAGTTAATTG
1 ATTTACGATCGCAACTGATA-ACATTAAAGCTCGCTGA-TTTACGATCACG-CTTAAGTTAATTG
* * * * * *
44612767 ATTTACGATCATAAACACTTCATTTAGAGTTCGTTGATTTACGATCACGATTCCTCTTAACAATT
63 ATTTACGATCATGAACAATTCATTTAGAGTTCGCTGATTTACGATCACGACTCCTTTTAACAGTT
44612832 TGTTG
128 TGTTG
*
44612837 ATTTACGATCGCGACTG
1 ATTTACGATCGCAACTG
44612854 CTATTATAAA
Statistics
Matches: 236, Mismatches: 42, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
132 27 0.11
133 208 0.88
134 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (132 bp):
ATTTACGATCGCAACTGATAACATTAAAGCTCGCTGATTTACGATCACGCTTAAGTTAATTGATT
TACGATCATGAACAATTCATTTAGAGTTCGCTGATTTACGATCACGACTCCTTTTAACAGTTTGT
TG
Found at i:44612675 original size:231 final size:236
Alignment explanation
Indices: 44612197--44612675 Score: 576
Period size: 231 Copynumber: 2.0 Consensus size: 236
44612187 CAGTTTTTTG
*
44612197 ATTTACGATCGCAACTGATATCATTAAAGCTCGTTGATTTACGATCACAGCTTAAGTTCATTGAT
1 ATTTACGATCGCAACTGATATCATTAAAGCTCATTGATTTACGATCACAGCTTAAGTTCATTGAT
* *** * *
44612262 TTACGATCATGAACAATTCATCTTGAGTTTTTTTATTTACGATCATGACTCCTCTCGACTCTTCT
66 TTACGATCATGAACAATTCATCTTAAGTTCACTGATTTACGATCACGA---C-CT--ACTCTTCT
* ** * * * * * *
44612327 TAGCAGTTTGTTGATTTACGATCTCAGCTGATATCATTAAAGCTCGCTGATTTATGATCACGGTT
125 TAACAGTTTACTGATTTACAATCGCAGCTGATAACATTAAAGCTCGCTGATTTACGATCACAGCT
* *
44612392 TGAGTTCATTAATTTACGATAATAAACAATTCATCTAGAGTTCACAA
190 TAAGCTCATTAATTTACGATAATAAACAATTCATCTAGAGTTCACAA
** * *
44612439 ATTTACGATCGCAACTGATATCATTAAAG-TCATTGATTTACGATCATGGCTTAATTTTATTGAT
1 ATTTACGATCGCAACTGATATCATTAAAGCTCATTGATTTACGATCACAGCTTAAGTTCATTGAT
*
44612503 TTATGATCATGAACAATTCAT-TTAAAGTTCACTGATTTACGATCACGA-CT-C-CTT-TTAACA
66 TTACGATCATGAACAATTCATCTT-AAGTTCACTGATTTACGATCACGACCTACTCTTCTTAACA
*
44612563 GTTTACTGATTTACAATCGCTA-TTGATAACATTAAAGCTCGCTGATTTACGATCACAGCTTAAG
130 GTTTACTGATTTACAATCGC-AGCTGATAACATTAAAGCTCGCTGATTTACGATCACAGCTTAAG
* * * * *
44612627 CTCATTGATTTACGATCATGAACAATTCATCTAGAGTTCGCTA
194 CTCATTAATTTACGATAATAAACAATTCATCTAGAGTTCACAA
44612670 ATTTAC
1 ATTTAC
44612676 AATCACGACT
Statistics
Matches: 206, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
231 100 0.49
232 4 0.02
233 1 0.00
236 2 0.01
240 2 0.01
241 68 0.33
242 29 0.14
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (236 bp):
ATTTACGATCGCAACTGATATCATTAAAGCTCATTGATTTACGATCACAGCTTAAGTTCATTGAT
TTACGATCATGAACAATTCATCTTAAGTTCACTGATTTACGATCACGACCTACTCTTCTTAACAG
TTTACTGATTTACAATCGCAGCTGATAACATTAAAGCTCGCTGATTTACGATCACAGCTTAAGCT
CATTAATTTACGATAATAAACAATTCATCTAGAGTTCACAA
Found at i:44616214 original size:35 final size:35
Alignment explanation
Indices: 44616168--44616238 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
44616158 CATCTCTGGA
*
44616168 GCTTGGTAAATATGGAAAGTGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGTGATCTTCAAAGATAT
* *
44616203 GCTTGGCAAATATGGAAGGTGATCTTCAAATATAT
1 GCTTGGCAAATATGGAAAGTGATCTTCAAAGATAT
44616238 G
1 G
44616239 TGATCATAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.31
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGTGATCTTCAAAGATAT
Found at i:44620764 original size:21 final size:21
Alignment explanation
Indices: 44620738--44620778 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
44620728 ATCTTATGGC
44620738 AAAA-GGTTAAAAGATATTTGG
1 AAAAGGGTT-AAAGATATTTGG
44620759 AAAAGGGTTAAAGATATTTG
1 AAAAGGGTTAAAGATATTTG
44620779 ACAGAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (21 bp):
AAAAGGGTTAAAGATATTTGG
Found at i:44630959 original size:23 final size:22
Alignment explanation
Indices: 44630933--44631008 Score: 116
Period size: 23 Copynumber: 3.3 Consensus size: 22
44630923 AGTGTTATTG
44630933 ATCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCT-CGGCTACAT
44630956 ATCAGTGGTAGCCTCGGCTACAT
1 ATCAGTGGTAG-CTCGGCTACAT
*
44630979 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGC-TCGGCTACAT
44631002 ATCAGTG
1 ATCAGTG
44631009 TGGCACTTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
22 1 0.02
23 46 0.94
24 2 0.04
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (22 bp):
ATCAGTGGTAGCTCGGCTACAT
Found at i:44633294 original size:19 final size:20
Alignment explanation
Indices: 44633266--44633307 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
44633256 ATTTGATCCT
* *
44633266 AATTTTAAAAAT-ACATAAA
1 AATTTCAAAAATAAAATAAA
44633285 AATTTCAAAAATAAAATAAA
1 AATTTCAAAAATAAAATAAA
44633305 AAT
1 AAT
44633308 ACATTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (20 bp):
AATTTCAAAAATAAAATAAA
Found at i:44635829 original size:21 final size:20
Alignment explanation
Indices: 44635791--44635833 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
44635781 TATTTTTATT
44635791 TTAAAATAAATCATAAATATA
1 TTAAAATAAATCATAAAT-TA
44635812 TTAAAATAAAT-ATAAAATTA
1 TTAAAATAAATCAT-AAATTA
44635832 TT
1 TT
44635834 TTTTATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
TTAAAATAAATCATAAATTA
Found at i:44640140 original size:7 final size:7
Alignment explanation
Indices: 44640128--44640185 Score: 80
Period size: 7 Copynumber: 8.3 Consensus size: 7
44640118 TCCTAAATTC
44640128 TCGATTT
1 TCGATTT
*
44640135 TTGATTT
1 TCGATTT
*
44640142 TCAATTT
1 TCGATTT
*
44640149 TTGATTT
1 TCGATTT
44640156 TCGATTT
1 TCGATTT
44640163 TCGATTT
1 TCGATTT
*
44640170 TCAATTT
1 TCGATTT
44640177 TCGATTT
1 TCGATTT
44640184 TC
1 TC
44640186 AATCTTCAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 43 1.00
ACGTcount: A:0.17, C:0.12, G:0.10, T:0.60
Consensus pattern (7 bp):
TCGATTT
Found at i:44640150 original size:14 final size:14
Alignment explanation
Indices: 44640131--44640203 Score: 92
Period size: 14 Copynumber: 5.2 Consensus size: 14
44640121 TAAATTCTCG
*
44640131 ATTTTTGATTTTCA
1 ATTTTCGATTTTCA
* *
44640145 ATTTTTGATTTTCG
1 ATTTTCGATTTTCA
44640159 ATTTTCGATTTTCA
1 ATTTTCGATTTTCA
44640173 ATTTTCGATTTTCA
1 ATTTTCGATTTTCA
* * *
44640187 ATCTTCAATTCTCA
1 ATTTTCGATTTTCA
44640201 ATT
1 ATT
44640204 CTCAATTAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 52 1.00
ACGTcount: A:0.22, C:0.14, G:0.07, T:0.58
Consensus pattern (14 bp):
ATTTTCGATTTTCA
Found at i:44640154 original size:21 final size:21
Alignment explanation
Indices: 44640123--44640188 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
44640113 CTCAATCCTA
* *
44640123 AATTCTCGATTTTTGATTTTC
1 AATTTTCGATTTTCGATTTTC
*
44640144 AATTTTTGATTTTCGATTTTC
1 AATTTTCGATTTTCGATTTTC
* *
44640165 GATTTTCAATTTTCGATTTTC
1 AATTTTCGATTTTCGATTTTC
44640186 AAT
1 AAT
44640189 CTTCAATTCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (21 bp):
AATTTTCGATTTTCGATTTTC
Found at i:44640193 original size:7 final size:7
Alignment explanation
Indices: 44640138--44640210 Score: 74
Period size: 7 Copynumber: 10.4 Consensus size: 7
44640128 TCGATTTTTG
44640138 ATTTTCA
1 ATTTTCA
**
44640145 ATTTTTG
1 ATTTTCA
*
44640152 ATTTTCG
1 ATTTTCA
*
44640159 ATTTTCG
1 ATTTTCA
44640166 ATTTTCA
1 ATTTTCA
*
44640173 ATTTTCG
1 ATTTTCA
44640180 ATTTTCA
1 ATTTTCA
*
44640187 ATCTTCA
1 ATTTTCA
*
44640194 ATTCTCA
1 ATTTTCA
*
44640201 ATTCTCA
1 ATTTTCA
44640208 ATT
1 ATT
44640211 AATTTTTTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 57 1.00
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.55
Consensus pattern (7 bp):
ATTTTCA
Found at i:44640193 original size:21 final size:21
Alignment explanation
Indices: 44640131--44640210 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 21
44640121 TAAATTCTCG
* **
44640131 ATTTTTGATTTTCAATTTTTG
1 ATTTTCGATTTTCAATTTTCA
*
44640152 ATTTTCGATTTTCGATTTTCA
1 ATTTTCGATTTTCAATTTTCA
*
44640173 ATTTTCGATTTTCAATCTTCA
1 ATTTTCGATTTTCAATTTTCA
* * *
44640194 ATTCTCAATTCTCAATT
1 ATTTTCGATTTTCAATT
44640211 AATTTTTTAA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.56
Consensus pattern (21 bp):
ATTTTCGATTTTCAATTTTCA
Found at i:44645004 original size:22 final size:24
Alignment explanation
Indices: 44644962--44645006 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
44644952 ATTTTTAAAA
*
44644962 AGATATATTTTTATATTTTAGATT
1 AGATATATTGTTATATTTTAGATT
44644986 AGAT-TATTGTTA-ATTTTAGAT
1 AGATATATTGTTATATTTTAGAT
44645007 ATAACTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 7 0.35
24 4 0.20
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (24 bp):
AGATATATTGTTATATTTTAGATT
Found at i:44645059 original size:18 final size:19
Alignment explanation
Indices: 44645012--44645059 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
44645002 TAGATATAAC
* *
44645012 TTTTAATATTATATTTCTG
1 TTTTAAGATTAGATTTCTG
*
44645031 TTTTAAAGATTAGATTTGTG
1 TTTT-AAGATTAGATTTCTG
44645051 -TTTAAGATT
1 TTTTAAGATT
44645060 TATGGATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 7 0.28
20 12 0.48
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.56
Consensus pattern (19 bp):
TTTTAAGATTAGATTTCTG
Found at i:44646455 original size:67 final size:68
Alignment explanation
Indices: 44646366--44646592 Score: 251
Period size: 67 Copynumber: 3.4 Consensus size: 68
44646356 CCTTAAAAGA
* * * * * * *
44646366 GGTTACAAGGTGTAATAGCATAGCTTGAGTATGACAACCTATAGTGTCTGCTAGGGCATTAAACA
1 GGTTACAAGGTGTAAGACCATAGCTTGACTATGACAACCTATAGAGTCTACCAGGACATTAAACA
44646431 TGG
66 TGG
* * *** * **
44646434 GGTTAC-ATGTGTAAGACCATAGCTTGACTATGGCAATGAATAGAGTCTACCAAGATGTTAAACA
1 GGTTACAAGGTGTAAGACCATAGCTTGACTATGACAACCTATAGAGTCTACCAGGACATTAAACA
44646498 TGG
66 TGG
* * * * *
44646501 GGTTACAAGGTGTAAGCCCGTAGCTCGACTATGATAACCTATAGAGTCCACCAGGACATTAAACA
1 GGTTACAAGGTGTAAGACCATAGCTTGACTATGACAACCTATAGAGTCTACCAGGACATTAAACA
44646566 TGG
66 TGG
*
44646569 GGTTAC-ATGTGTAAGACCATAGCT
1 GGTTACAAGGTGTAAGACCATAGCT
44646593 CAACTATGGC
Statistics
Matches: 127, Mismatches: 31, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
67 67 0.53
68 60 0.47
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (68 bp):
GGTTACAAGGTGTAAGACCATAGCTTGACTATGACAACCTATAGAGTCTACCAGGACATTAAACA
TGG
Found at i:44646532 original size:68 final size:67
Alignment explanation
Indices: 44646422--44646605 Score: 233
Period size: 68 Copynumber: 2.7 Consensus size: 67
44646412 TCTGCTAGGG
* ** *
44646422 CATTAAACATGGGGTTACATGTGTAAGACCATAGCTTGACTATGGCAATGAATAGAGTCTACCAA
1 CATTAAACATGGGGTTACATGTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTCCACCAA
44646487 GA
66 GA
** * * * ** *
44646489 TGTTAAACATGGGGTTACAAGGTGTAAGCCCGTAGCTCGACTATGATAACCTATAGAGTCCACCA
1 CATTAAACATGGGGTTAC-ATGTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTCCACCA
*
44646554 GGA
65 AGA
*
44646557 CATTAAACATGGGGTTACATGTGTAAGACCATAGCTCAACTATGGCAAC
1 CATTAAACATGGGGTTACATGTGTAAGACCATAGCTCGACTATGGCAAC
44646606 ATGTTGAGTC
Statistics
Matches: 95, Mismatches: 21, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
67 41 0.43
68 54 0.57
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (67 bp):
CATTAAACATGGGGTTACATGTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTCCACCAA
GA
Found at i:44649643 original size:42 final size:42
Alignment explanation
Indices: 44649584--44649669 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 42
44649574 GTTTCCTCAC
* *
44649584 CCGTGTAACTTACTGAGTTGTCTCACACGCCCGTGTGCCAGG
1 CCGTGTAACTTACTGAGTTGCCACACACGCCCGTGTGCCAGG
* * *
44649626 CCGTGTAACTCT-TTGAGTTGCCACGCACGCCCGTGTGCTAGG
1 CCGTGTAACT-TACTGAGTTGCCACACACGCCCGTGTGCCAGG
44649668 CC
1 CC
44649670 CTGTGCTAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
42 37 0.97
43 1 0.03
ACGTcount: A:0.15, C:0.33, G:0.27, T:0.26
Consensus pattern (42 bp):
CCGTGTAACTTACTGAGTTGCCACACACGCCCGTGTGCCAGG
Found at i:44676893 original size:25 final size:25
Alignment explanation
Indices: 44676852--44676920 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
44676842 ATGCTTATAC
* *
44676852 GAGCTGTA-AACGTTAAGCTCCTCT
1 GAGCTGAATAACGGTAAGCTCCTCT
*
44676876 GAGCTGAATAACGGTAAGCTCCTTT
1 GAGCTGAATAACGGTAAGCTCCTCT
*
44676901 GAGATGAATAACGGTAAGCT
1 GAGCTGAATAACGGTAAGCT
44676921 AATAAGAGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 7 0.17
25 33 0.82
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (25 bp):
GAGCTGAATAACGGTAAGCTCCTCT
Found at i:44676933 original size:25 final size:25
Alignment explanation
Indices: 44676880--44676933 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
44676870 TCCTCTGAGC
** **
44676880 TGAATAACGGTAAGCTCCTTTGAGA
1 TGAATAACGGTAAGCTAATAAGAGA
*
44676905 TGAATAACGGTAAGCTAATAAGAGT
1 TGAATAACGGTAAGCTAATAAGAGA
44676930 TGAA
1 TGAA
44676934 ATCGATAACC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (25 bp):
TGAATAACGGTAAGCTAATAAGAGA
Found at i:44677189 original size:15 final size:16
Alignment explanation
Indices: 44677169--44677198 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
44677159 TGAATGGATT
44677169 TAACTCA-ATTCAATA
1 TAACTCATATTCAATA
44677184 TAACTCATATTCAAT
1 TAACTCATATTCAAT
44677199 TTAGTCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (16 bp):
TAACTCATATTCAATA
Found at i:44685458 original size:42 final size:42
Alignment explanation
Indices: 44685359--44685523 Score: 136
Period size: 43 Copynumber: 3.9 Consensus size: 42
44685349 AACTCGTACA
* * * * * *
44685359 ATGCCAACGTTCCAGACGTGGTCTTACATGTATTCAAATAACG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCATAT-ACG
* *
44685402 ATGCCACTTTCCCAGACAG-GGTCTTACACGAAATCATATACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCATATACG
* * * *
44685444 ATGCCAATGTCCCAGACATGATCTTACACGTAAATC-TCAAATCA
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AAATCAT-ATA-CG
* * *
44685488 ATGCCAAAGTCCCAGACGTGGTCTTATACGATATCA
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCA
44685524 CATATCGAAA
Statistics
Matches: 97, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
42 29 0.30
43 40 0.41
44 28 0.29
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCATATACG
Found at i:44688622 original size:22 final size:22
Alignment explanation
Indices: 44688594--44688662 Score: 129
Period size: 22 Copynumber: 3.1 Consensus size: 22
44688584 TGTTGATAGT
*
44688594 ACGTACTAAGCTCTCATGTTTC
1 ACGTACTAAGCTCTCATGTTTA
44688616 ACGTACTAAGCTCTCATGTTTA
1 ACGTACTAAGCTCTCATGTTTA
44688638 ACGTACTAAGCTCTCATGTTTA
1 ACGTACTAAGCTCTCATGTTTA
44688660 ACG
1 ACG
44688663 AATTTGTGAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (22 bp):
ACGTACTAAGCTCTCATGTTTA
Found at i:44691617 original size:43 final size:43
Alignment explanation
Indices: 44691556--44691881 Score: 399
Period size: 43 Copynumber: 7.7 Consensus size: 43
44691546 TGTCCCAAAC
* ** * *
44691556 ATGGTCTTACATGGAAATCTCGTATCGATTCCAATATCCCAGCT
1 ATGGTCTTACA-CGAAATCTCAAATCGATGCCAATAGCCCAGCT
* *
44691600 ATAGTCATACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
*
44691643 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAACT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
* *
44691686 ATGGTCTTACAAG-AATCTCAAATCGATGCCAATATCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
* * *
44691728 ATGGTCTTACAAG-AATCTCAAATCAATGCCAATAGCCTAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
**
44691770 ATGGTCTTACACGAAATCTCAAATATATGCCAATAGCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
* * * *
44691813 ATGGTCTTACACG-AATATCAAATCGATGTC-ATATCCCAGAT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
* * ** *
44691854 ATGGACTTATACGGGATCTCAAGTCGAT
1 ATGGTCTTACACGAAATCTCAAATCGAT
44691882 ATTAGAACAT
Statistics
Matches: 249, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
41 20 0.08
42 102 0.41
43 118 0.47
44 9 0.04
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
Found at i:44691718 original size:85 final size:85
Alignment explanation
Indices: 44691556--44691881 Score: 395
Period size: 85 Copynumber: 3.8 Consensus size: 85
44691546 TGTCCCAAAC
* ** * * * *
44691556 ATGGTCTTACATGGAAATCTCGTATCGATTCCAATATCCCAGCTATAGTCATACACGAAATCTCA
1 ATGGTCTTACA-CG-AATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCA
44691621 AATCGATGCCAATAGCCCAGCT
64 AATCGATGCCAATAGCCCAGCT
* *
44691643 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAACTATGGTCTTACAAG-AATCTCAA
1 ATGGTCTTACACG-AATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAA
*
44691707 ATCGATGCCAATATCCCAGCT
65 ATCGATGCCAATAGCCCAGCT
* * *
44691728 ATGGTCTTACAAGAATCTCAAATCAATGCCAATAGCCTAGCTATGGTCTTACACGAAATCTCAAA
1 ATGGTCTTACACGAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAA
**
44691793 TATATGCCAATAGCCCAGCT
66 TCGATGCCAATAGCCCAGCT
* * * * * * ** *
44691813 ATGGTCTTACACGAATATCAAATCGATGTC-ATATCCCAGATATGGACTTATACGGGATCTCAAG
1 ATGGTCTTACACGAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAA
44691877 TCGAT
66 TCGAT
44691882 ATTAGAACAT
Statistics
Matches: 206, Mismatches: 32, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
84 67 0.33
85 92 0.45
86 36 0.17
87 11 0.05
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26
Consensus pattern (85 bp):
ATGGTCTTACACGAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAA
TCGATGCCAATAGCCCAGCT
Found at i:44691771 original size:127 final size:128
Alignment explanation
Indices: 44691556--44691862 Score: 429
Period size: 127 Copynumber: 2.4 Consensus size: 128
44691546 TGTCCCAAAC
* ** * * * *
44691556 ATGGTCTTACATGGAAATCTCGTATCGATTCCAATATCCCAGCTATAGTCATACACGAAATCTCA
1 ATGGTCTTACA-AG-AATCTCAAATCGATGCCAATATCCCAGCTATGGTCTTACAAGAAATCTCA
* *
44691621 AATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAACT
64 AATCAATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAATAGATGCCAATAGCCCAACT
44691686 ATGGTCTTACAAGAATCTCAAATCGATGCCAATATCCCAGCTATGGTCTTACAAG-AATCTCAAA
1 ATGGTCTTACAAGAATCTCAAATCGATGCCAATATCCCAGCTATGGTCTTACAAGAAATCTCAAA
* * *
44691750 TCAATGCCAATAGCCTAGCTATGGTCTTACACGAAATCTCAAATATATGCCAATAGCCCAGCT
66 TCAATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAATAGATGCCAATAGCCCAACT
* * * * *
44691813 ATGGTCTTACACGAATATCAAATCGATGTC-ATATCCCAGATATGGACTTA
1 ATGGTCTTACAAGAATCTCAAATCGATGCCAATATCCCAGCTATGGTCTTA
44691863 TACGGGATCT
Statistics
Matches: 160, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
126 18 0.11
127 94 0.59
128 36 0.22
129 1 0.01
130 11 0.07
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (128 bp):
ATGGTCTTACAAGAATCTCAAATCGATGCCAATATCCCAGCTATGGTCTTACAAGAAATCTCAAA
TCAATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAATAGATGCCAATAGCCCAACT
Found at i:44702577 original size:44 final size:44
Alignment explanation
Indices: 44702495--44703256 Score: 323
Period size: 44 Copynumber: 17.7 Consensus size: 44
44702485 GTTTTAATCC
* * * * *
44702495 ACTCCACTGTAA-CTCCAGGGAGATAGGA-TTATCGTCTTCAATCT
1 ACTCCACTGCAACCT-CAGGGAGATAAGACTT-GCTTCTTCGATCT
*
44702539 GCTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCT
* * * * * *
44702583 ACTCCGCTGCAACCTCAGGGAGATAACACCTG-AT-GT-GATAT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCT
* ** * * * *
44702624 TCTCTGCTGCAACCTTAGAGAGATAAGATCTAT--TAT-TTCAATCC
1 ACTCCACTGCAACCTCAGGGAGATAAGA-CT-TGCT-TCTTCGATCT
* * * ** *
44702668 ACTCCACTGCAACTTCAGGGAGATAGGA-TTATCAGCTTCCATCT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTT-GCTTCTTCGATCT
* *
44702712 GCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGATCT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCT
* * * * *
44702756 ACTCCGCTGCAACCTCAGGGAGATAAAACCTG-AT-GT-GATCT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCT
*** * * *
44702797 ACTTTGCTGCAACTTCAGAGAGATAAGATCTAT--TAT-TTCAATC-
1 ACTCCACTGCAACCTCAGGGAGATAAGA-CT-TGCT-TCTTCGATCT
* * * * ** *
44702840 -C-GCACTGCAACTTCAGGGAGATAGGA-TTATCAGCTTCCATCT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTT-GCTTCTTCGATCT
* * ** *
44702882 GCTTCACTGCAACCTCAATGAGATAAGACCTGCTTCTTCGATCT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCT
* **
44702926 ACTCCGCTGCAACCTCAGGGAGATAAGAC---CTAATGT-GATCT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCT-TCGATCT
** * * * *
44702967 ACTCTGCTGCAACTTCAGAGAGATAAGATCTAT--TAT-TTCAATCC
1 ACTCCACTGCAACCTCAGGGAGATAAGA-CT-TGCT-TCTTCGATCT
* * * ** * *
44703011 ACTCCACTGCAACTTCAGGGAGATAGGA-TTATCAGCTTCCATAT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTT-GCTTCTTCGATCT
* * * * *
44703055 GCTCCACTGCAACCTCAGAGAGATAAGACCTG-AT-GT-GATCT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCT
** * * * *
44703096 ACTCTGCTGCAACTTCAGAGAGATAAGATCTAT--TAT-TTCAATCC
1 ACTCCACTGCAACCTCAGGGAGATAAGA-CT-TGCT-TCTTCGATCT
* * * ** *
44703140 ACTCCACTGCAACTTCAGGGAGATAGGA-TTATCAGCTTCCATCT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTT-GCTTCTTCGATCT
* * *
44703184 GCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTTGATCT
1 ACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCT
* *
44703228 ACTCCGCTGTAACCTCAGGGAGATAAGAC
1 ACTCCACTGCAACCTCAGGGAGATAAGAC
44703257 CTGATGTGAT
Statistics
Matches: 538, Mismatches: 136, Indels: 88
0.71 0.18 0.12
Matches are distributed among these distances:
38 1 0.00
39 1 0.00
41 144 0.27
42 12 0.02
43 14 0.03
44 358 0.67
45 8 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (44 bp):
ACTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCT
Found at i:44702664 original size:129 final size:129
Alignment explanation
Indices: 44702531--44703473 Score: 543
Period size: 129 Copynumber: 7.3 Consensus size: 129
44702521 GATTATCGTC
44702531 TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCTACTCCGCTGCAAC
1 TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCTACTCCGCTGCAAC
* * *
44702596 CTCAGGGAGATAACACCTGATGTGATATTCTCTGCTGCAACCTT-AGAGAGATAAGATCTATTAT
66 CTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAA-CTTCAGAGAGATAAGATCTATTAT
** * * * ** * * *
44702660 TTCAATCCACTCCACTGCAACTTCAGGGAGATAGGA-TTATCAGCTTCCATCTGCTCCACTGCAA
1 TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTT-GCTTCTTCGATCTACTCCGCTGCAA
* * * * * * *
44702724 CCTCAGGGAGATAAGACCTGCTTCTTCGATCTACTCCGCTGCAACCTCAGGGAGATAA-AAC-CT
65 CCTCAGGGAGATAAGACCTG-AT-GT-GATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTAT
*
44702787 GAT
127 TAT
* * * *** * * * * *
44702790 GT-GATCTACTTTGCTGCAACTTCAGAGAGATAAGATCTAT--TAT-TTCAATC--C-GCACTGC
1 TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGA-CT-TGCT-TCTTCGATCTACTCCGCTGC
* * * * * * *
44702848 AACTTCAGGGAGATAGGA--TTATCAGCTTCCATCTGCT-TCACTGCAACCTCA-ATGAGATAAG
63 AACCTCAGGGAGATAAGACCTGAT--G--T-GATCTACTCT-GCTGCAACTTCAGA-GAGATAAG
* * *
44702909 ACCTGCTT-C
121 ATCT-ATTAT
* * * ** *
44702918 TTCGATCTACTCCGCTGCAACCTCAGGGAGATAAGAC---CTAATGT-GATCTACTCTGCTGCAA
1 TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCT-TCGATCTACTCCGCTGCAA
* * * * * * * ** * *
44702979 CTTCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGAT-TAT
65 CCTCAGGGAGATAAGA-C-CTGATGT-GATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTAT
* *
44703043 CAGC
127 TA-T
* * * * * * *
44703047 TTCCATATGCTCCACTGCAACCTCAGAGAGATAAGACCTG-AT-GT-GATCTACTCTGCTGCAAC
1 TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCTACTCCGCTGCAAC
* * * * * * * ** * * *
44703109 TTCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGAT-TATC
66 CTCAGGGAGATAAGA-C-CTGATGT-GATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATT
*
44703173 AGC
128 A-T
* * * *
44703176 TTCCATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTTGATCTACTCCGCTGTAAC
1 TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCTACTCCGCTGCAAC
* * *
44703241 CTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTACAACTTCAGAGATATACGATCTATTAT
66 CTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTAT
* * * * * ** * * * **
44703305 TTCAATCCGTTCCACTGCAACTTCAGGGAGATAGGA-TTATCAGCTTCCATTTGCTCTACTGCAA
1 TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTT-GCTTCTTCGATCTACTCCGCTGCAA
44703369 CCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTAT
65 CCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTAT
* * *
44703434 TTCAATCCGCTCCACTGCAACTTCAGGGAGATAGGACTTG
1 TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTTG
44703474 GTGCGATCTC
Statistics
Matches: 653, Mismatches: 120, Indels: 82
0.76 0.14 0.10
Matches are distributed among these distances:
123 1 0.00
124 1 0.00
126 53 0.08
127 5 0.01
128 7 0.01
129 505 0.77
130 16 0.02
131 8 0.01
132 53 0.08
133 4 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (129 bp):
TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGATCTACTCCGCTGCAAC
CTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTAT
Found at i:44702696 original size:173 final size:173
Alignment explanation
Indices: 44702407--44703123 Score: 1099
Period size: 173 Copynumber: 4.2 Consensus size: 173
44702397 CCATTCTCAG
* * * * * *
44702407 TCTACTCCTCTGAAACCTTAGGGAGATAAGACCTGATGTGATCTACTCTACTGCAAGTTTAGAGA
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
* * * * *
44702472 GATAAGATCTATTGTTTTAATCCACTCCACTGTAACTCCAGGGAGATAGGATTATC-GTCTTCAA
66 GATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAG-CTTCCA
*
44702536 TCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGA
130 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * *
44702580 TCTACTCCGCTGCAACCTCAGGGAGATAACACCTGATGTGATATTCTCTGCTGCAACCTT-AGAG
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAA-CTTCAGAG
44702644 AGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCA
65 AGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCA
44702709 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
130 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* *
44702753 TCTACTCCGCTGCAACCTCAGGGAGATAAAACCTGATGTGATCTACTTTGCTGCAACTTCAGAGA
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
*
44702818 GATAAGATCTATTATTTCAAT-C-C-GCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCAT
66 GATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCAT
* **
44702880 CTGCTTCACTGCAACCTCAATGAGATAAGACCTGCTTCTTCGA
131 CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
*
44702923 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTAATGTGATCTACTCTGCTGCAACTTCAGAGA
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
44702988 GATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCAT
66 GATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCAT
* * * *
44703053 ATGCTCCACTGCAACCTCAGAGAGATAAGACCTG-AT-GT-GA
131 CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * *
44703093 TCTACTCTGCTGCAACTTCAGAGAGATAAGA
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGA
44703124 TCTATTATTT
Statistics
Matches: 503, Mismatches: 35, Indels: 15
0.91 0.06 0.03
Matches are distributed among these distances:
170 191 0.38
171 3 0.01
172 6 0.01
173 300 0.60
174 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (173 bp):
TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
GATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCAT
CTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
Found at i:44703152 original size:173 final size:175
Alignment explanation
Indices: 44702407--44703208 Score: 972
Period size: 173 Copynumber: 4.7 Consensus size: 175
44702397 CCATTCTCAG
* * * * * * * *
44702407 TCTACTCCTCTGAAACCTTAGGGAGATAAGA-C-CTGATGTGATCTACTCTACTGCAAGTTTAGA
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGATCTATGATGTAATCCACTCTACTGCAACTTCAGA
* * * *
44702470 GAGATAAGATCTATTGTTTTAATCCACTCCACTGTAACTCCAGGGAGATAGGATTATC-GTCTTC
66 GAGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAG-CTTC
* *
44702534 AATCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCGA
130 CATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * * *** *
44702580 TCTACTCCGCTGCAACCTCAGGGAGATAACA-C-CTGATGTGATATTCTCTGCTGCAACCTT-AG
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGATCTATGATGTAATCCACTCTACTGCAA-CTTCAG
44702642 AGAGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTC
65 AGAGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTC
44702707 CATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
130 CATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * * * * *
44702753 TCTACTCCGCTGCAACCTCAGGGAGATAA-AAC-CTGATGTGATCTACTTTGCTGCAACTTCAGA
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGATCTATGATGTAATCCACTCTACTGCAACTTCAGA
*
44702816 GAGATAAGATCTATTATTTCAAT-C-C-GCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCC
66 GAGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCC
* **
44702878 ATCTGCTTCACTGCAACCTCAATGAGATAAGACCTGCTTCTTCGA
131 ATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * * *
44702923 TCTACTCCGCTGCAACCTCAGGGAGATAAGACCTA--ATGTGATCTACTCTGCTGCAACTTCAGA
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGATCTATGATGTAATCCACTCTACTGCAACTTCAGA
44702986 GAGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCC
66 GAGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCC
* * * *
44703051 ATATGCTCCACTGCAACCTCAGAGAGATAAGACCTG-AT-GT-GA
131 ATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
* * * * * *
44703093 TCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAG
1 TCTACTCCGCTGCAACCTCAGGGAGATAAGATCTATGATGT-AATCCACTCTACTGCAACTTCAG
* * * * * ** *
44703158 GGAGATAGGAT-TATCAGCTTCCATCTGCTCCACTGCAACCTCAGGGAGATA
65 AGAGATAAGATCTATTA-TTTCAATCCACTCCACTGCAACTTCAGGGAGATA
44703209 AGACCTGCTT
Statistics
Matches: 568, Mismatches: 48, Indels: 26
0.88 0.07 0.04
Matches are distributed among these distances:
170 190 0.33
171 5 0.01
172 14 0.02
173 356 0.63
174 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (175 bp):
TCTACTCCGCTGCAACCTCAGGGAGATAAGATCTATGATGTAATCCACTCTACTGCAACTTCAGA
GAGATAAGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCC
ATCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTCGA
Found at i:44703229 original size:302 final size:301
Alignment explanation
Indices: 44702757--44703469 Score: 1232
Period size: 302 Copynumber: 2.4 Consensus size: 301
44702747 CTTCGATCTA
* * *
44702757 CTCCGCTGCAACCTCAGGGAGATAAAACCTGATGTGATCTACTTTGCTGCAACTTCAGAGAGATA
1 CTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATA
*
44702822 AGATCTATTATTTCAAT-CC-GCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGCT
66 AGATCTATTATTTCAATCCCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGCT
* *
44702885 TCACTGCAACCTCAATGAGATAAGACCTGCTTCTTCGATCTACTCCGCTGCAACCTCAGGGAGAT
131 CCACTGCAACCTCAAGGAGATAAGACCTGCTTCTTCGATCTACTCCGCTGCAACCTCAGGGAGAT
*
44702950 AAGACCTAATGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTCAATCCACTC
196 AAGACCTAATGTGATCTACTCTGCTACAACTTCAGAGAGATAAGATCTATTATTTCAATCCACTC
44703015 CACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATATG
261 CACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATATG
*
44703056 CTCCACTGCAACCTCAGAGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATA
1 CTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATA
44703121 AGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGC
66 AGATCTATTATTTCAATCC-CTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGC
* * *
44703186 TCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTTGATCTACTCCGCTGTAACCTCAGGGAGA
130 TCCACTGCAACCTCAAGGAGATAAGACCTGCTTCTTCGATCTACTCCGCTGCAACCTCAGGGAGA
* * * **
44703251 TAAGACCTGATGTGATCTACTCTGCTACAACTTCAGAGATATACGATCTATTATTTCAATCCGTT
195 TAAGACCTAATGTGATCTACTCTGCTACAACTTCAGAGAGATAAGATCTATTATTTCAATCCACT
*
44703316 CCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATTTG
260 CCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATATG
*
44703358 CTCTACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATA
1 CTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATA
44703423 AGATCTATTATTTCAATCCGCTCCACTGCAACTTCAGGGAGATAGGA
66 AGATCTATTATTTCAATCC-CTCCACTGCAACTTCAGGGAGATAGGA
44703470 CTTGGTGCGA
Statistics
Matches: 391, Mismatches: 20, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
299 78 0.20
300 1 0.00
301 1 0.00
302 311 0.80
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (301 bp):
CTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATA
AGATCTATTATTTCAATCCCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGCT
CCACTGCAACCTCAAGGAGATAAGACCTGCTTCTTCGATCTACTCCGCTGCAACCTCAGGGAGAT
AAGACCTAATGTGATCTACTCTGCTACAACTTCAGAGAGATAAGATCTATTATTTCAATCCACTC
CACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATATG
Found at i:44703244 original size:173 final size:170
Alignment explanation
Indices: 44703056--44703425 Score: 587
Period size: 173 Copynumber: 2.2 Consensus size: 170
44703046 CTTCCATATG
* *
44703056 CTCCACTGCAACCTCAGAGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATA
1 CTCCGCTGCAACCTCAGAGAGATAAGACCTGATGTGATCTACTCTGCTACAACTTCAGAGAGATA
44703121 AGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGC
66 AGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGC
* *
44703186 TCCACTGCAACCTCAGGGAGATAAGACCTGCTTCTTTGATCTA
131 TCCACTGCAACCTCAGGGAGATAAGACCTG---ATGTGATCTA
* * *
44703229 CTCCGCTGTAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTACAACTTCAGAGATATA
1 CTCCGCTGCAACCTCAGAGAGATAAGACCTGATGTGATCTACTCTGCTACAACTTCAGAGAGATA
* ** *
44703294 CGATCTATTATTTCAATCCGTTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATTTGC
66 AGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGC
*
44703359 TCTACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTA
131 TCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTA
* *
44703399 CTCTGCTGCAACTTCAGAGAGATAAGA
1 CTCCGCTGCAACCTCAGAGAGATAAGA
44703426 TCTATTATTT
Statistics
Matches: 181, Mismatches: 16, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
170 31 0.17
173 150 0.83
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (170 bp):
CTCCGCTGCAACCTCAGAGAGATAAGACCTGATGTGATCTACTCTGCTACAACTTCAGAGAGATA
AGATCTATTATTTCAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGC
TCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTA
Found at i:44708277 original size:8 final size:8
Alignment explanation
Indices: 44708264--44708288 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
44708254 ACTTGCATGG
44708264 AAAGAATA
1 AAAGAATA
44708272 AAAGAATA
1 AAAGAATA
44708280 AAAGAATA
1 AAAGAATA
44708288 A
1 A
44708289 TTGCCCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (8 bp):
AAAGAATA
Found at i:44711906 original size:22 final size:22
Alignment explanation
Indices: 44711878--44711922 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
44711868 TCATGGTGGT
44711878 TTGCTAATTTCTTTAGGGATAA
1 TTGCTAATTTCTTTAGGGATAA
44711900 TTGCTAATTTCTTTAGGGATAA
1 TTGCTAATTTCTTTAGGGATAA
44711922 T
1 T
44711923 GGAAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.47
Consensus pattern (22 bp):
TTGCTAATTTCTTTAGGGATAA
Found at i:44711930 original size:22 final size:22
Alignment explanation
Indices: 44711883--44711931 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
44711873 GTGGTTTGCT
* **
44711883 AATTTCTTTAGGGATAATTGCT
1 AATTTCTTTAGGGATAATGGAA
44711905 AATTTCTTTAGGGATAATGGAA
1 AATTTCTTTAGGGATAATGGAA
44711927 AATTT
1 AATTT
44711932 TACCTTTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.06, G:0.18, T:0.43
Consensus pattern (22 bp):
AATTTCTTTAGGGATAATGGAA
Found at i:44715491 original size:23 final size:23
Alignment explanation
Indices: 44715461--44715507 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
44715451 TTCAATAATA
* * *
44715461 CATTTATGGCGTATTCTGTCTGG
1 CATTTATGGCATAATCTGTATGG
44715484 CATTTATGGCATAATCTGTATGG
1 CATTTATGGCATAATCTGTATGG
44715507 C
1 C
44715508 TTATGTGGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.40
Consensus pattern (23 bp):
CATTTATGGCATAATCTGTATGG
Found at i:44715551 original size:21 final size:20
Alignment explanation
Indices: 44715511--44715573 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
44715501 GTATGGCTTA
* *
44715511 TGTGGCATTCTATTTGGCCTT
1 TGTGGCATTCT-GTTAGCCTT
44715532 TGTGGCATTGC-GATTAGCCTT
1 TGTGGCATT-CTG-TTAGCCTT
*
44715553 CGTGGCATTCTGTTAGCCTT
1 TGTGGCATTCTGTTAGCCTT
44715573 T
1 T
44715574 ATGGTGTACT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
20 9 0.26
21 25 0.71
22 1 0.03
ACGTcount: A:0.11, C:0.21, G:0.25, T:0.43
Consensus pattern (20 bp):
TGTGGCATTCTGTTAGCCTT
Found at i:44724783 original size:159 final size:162
Alignment explanation
Indices: 44724485--44724801 Score: 451
Period size: 165 Copynumber: 2.0 Consensus size: 162
44724475 GAAAAATATG
* *
44724485 TATATTCCTTCTATAAAGATTTGATCCTTTTGCTATCCAACCTTTTAAAATTATTGTTTTATCTC
1 TATATTCCTTCCATAAAGATTTGATCCTTTTGCTATCCAACCTTTTAAAATTATTGTTTTATCTA
* * * *
44724550 TATTATAATAATCATTCAAGTGAATTAGTGTCACAAGTTAATCGAGTAACAATTTAATTGAAAAA
66 TATTATAATAA-CATT--A-TAAATGAGTGTCACAAGTTAATCGAGTAACAATTCAATTAAAAAA
*
44724615 TGGTTAAAATCTTA-TTTTAATCAAATATTCAAATT
127 TGGTTAAAATCCTATTTTTAATCAAATATTCAAATT
* * * * * *
44724650 TATATTCTTTCCATAAATATTTTATCCTTTTGTTGTCCATCCTTTTAAAATTATTGTTTTATCTA
1 TATATTCCTTCCATAAAGATTTGATCCTTTTGCTATCCAACCTTTTAAAATTATTGTTTTATCTA
*
44724715 TGTTATAATAA-ATT-TAAATGAGTGTCACAAGTTAATCGAGTAACAATTCAATTAAAAAATGGT
66 TATTATAATAACATTATAAATGAGTGTCACAAGTTAATCGAGTAACAATTCAATTAAAAAATGGT
44724778 TAAAATCCTATTTTTAATCAAATA
131 TAAAATCCTATTTTTAATCAAATA
44724802 ATATAGGGAT
Statistics
Matches: 137, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
159 54 0.39
160 13 0.09
163 3 0.02
165 67 0.49
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.43
Consensus pattern (162 bp):
TATATTCCTTCCATAAAGATTTGATCCTTTTGCTATCCAACCTTTTAAAATTATTGTTTTATCTA
TATTATAATAACATTATAAATGAGTGTCACAAGTTAATCGAGTAACAATTCAATTAAAAAATGGT
TAAAATCCTATTTTTAATCAAATATTCAAATT
Found at i:44725074 original size:29 final size:30
Alignment explanation
Indices: 44725031--44725088 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
44725021 AAACTGAATC
44725031 AAATCAAAATATTATGTATAAAATTACACA
1 AAATCAAAATATTATGTATAAAATTACACA
* *
44725061 AAATTAAAAT-TTATGTATAATATTACAC
1 AAATCAAAATATTATGTATAAAATTACAC
44725089 GTTAAACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.53, C:0.09, G:0.03, T:0.34
Consensus pattern (30 bp):
AAATCAAAATATTATGTATAAAATTACACA
Found at i:44725451 original size:30 final size:31
Alignment explanation
Indices: 44725415--44725473 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
44725405 GTATTAAAAG
44725415 AAATCATATATTAAAAGAAATAAC-AATTTT
1 AAATCATATATTAAAAGAAATAACTAATTTT
* *
44725445 AAATCATGTATTAAAATAAATAACTAATT
1 AAATCATATATTAAAAGAAATAACTAATT
44725474 ACTTAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (31 bp):
AAATCATATATTAAAAGAAATAACTAATTTT
Found at i:44726951 original size:34 final size:33
Alignment explanation
Indices: 44726887--44727002 Score: 151
Period size: 34 Copynumber: 3.4 Consensus size: 33
44726877 TTTTAAAAAA
* * *
44726887 TAAATCAGGGTTTACAGTTTTTTAAAAAATTAAT
1 TAAATTAGGGTTTAGAG-ATTTTAAAAAATTAAT
* *
44726921 TAAATTAGGTTTTAGGGATTTTAAATAAATTAAT
1 TAAATTAGGGTTTAGAGATTTTAAA-AAATTAAT
*
44726955 TAAATTAGGGTTTAGAGTTTTTAAGAAAATTAAT
1 TAAATTAGGGTTTAGAGATTTTAA-AAAATTAAT
44726989 TAAATTAGGGTTTA
1 TAAATTAGGGTTTA
44727003 ATTTTTTTAA
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
33 7 0.10
34 64 0.89
35 1 0.01
ACGTcount: A:0.41, C:0.02, G:0.16, T:0.42
Consensus pattern (33 bp):
TAAATTAGGGTTTAGAGATTTTAAAAAATTAAT
Found at i:44727260 original size:126 final size:124
Alignment explanation
Indices: 44727102--44727746 Score: 826
Period size: 126 Copynumber: 5.1 Consensus size: 124
44727092 GATTTTATTT
* * * * *
44727102 TTTTTCTACAGTAGTTTCAGAAAAATTAATTTTGAGAAGATGGTTCTGAAAAGATAATGTCAAAA
1 TTTTTCTACAGTAG-TTCATAAAAA-AAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * **
44727167 ACACTACAAACAGGATGCACTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGGACGCTC
64 ACGCTTCAAGTAGGATGCACTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGGACGCTC
* * *
44727228 TCTTTCTACAGTAGTTCATAAAAAACACATTTTGAGAAGAAGGTTCTGAAAATATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCATAAAAAA-A-ATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * *
44727293 ACGCTTCAAGTAGGATGCACTGTTAGCAAAATTACTAAAAAAAGCTCCCACGTAGACGCTC
64 ACGCTTCAAGTAGGATGCACTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGGACGCTC
* *
44727354 TCTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCAT-AAAAAA-AATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * * * *
44727419 ACGCTTCAAGTAGGATGCACTGTTAATAAAATTACTGAAAAAAGCTCCCACGTGGGCGCTT
64 ACGCTTCAAGTAGGATGCACTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGGACGCTC
* * * *
44727480 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTTCTAAAAAAATAGTGTTAAAA
1 TTTTTCTACAGTAGTTCAT-AAAAAA-AATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * * * * *
44727545 ACGCTTCAAGCAAGATGCACTATCAACAAAATTACTGAAAAAAGCTCCCATGTGGAAGCTC
64 ACGCTTCAAGTAGGATGCACTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGGACGCTC
* ** * *
44727606 TTTTTCTACGGTAGTT-ACTGAAAAATGATTTTGAGAATATGGTTCTG-AAAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCA-T-AAAAAAAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * *
44727669 ACGCTCCAAGTAGGATGCACTGTCAACAAAATTACGAAAAAAAGCTCCCACGTGAACGCTC
64 ACGCTTCAAGTAGGATGCACTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGGACGCTC
44727730 TTTTTCTACAGTAGTTC
1 TTTTTCTACAGTAGTTC
44727747 TTGCTTGGCC
Statistics
Matches: 458, Mismatches: 56, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
124 82 0.18
125 26 0.06
126 343 0.75
127 7 0.02
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (124 bp):
TTTTTCTACAGTAGTTCATAAAAAAAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAAC
GCTTCAAGTAGGATGCACTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGGACGCTC
Found at i:44731288 original size:18 final size:18
Alignment explanation
Indices: 44731262--44731303 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
44731252 GACTGGTAAA
* *
44731262 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
44731280 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
44731298 AGGATA
1 AGGATA
44731304 TGCACCTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.43, C:0.07, G:0.29, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:44735551 original size:15 final size:15
Alignment explanation
Indices: 44735533--44735567 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
44735523 TTATGCATGA
44735533 TATTACTGTATCTGT
1 TATTACTGTATCTGT
*
44735548 TATTTCTGTATCTGT
1 TATTACTGTATCTGT
*
44735563 GATTA
1 TATTA
44735568 AGGTGGGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.20, C:0.11, G:0.14, T:0.54
Consensus pattern (15 bp):
TATTACTGTATCTGT
Found at i:44739214 original size:15 final size:15
Alignment explanation
Indices: 44739196--44739225 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
44739186 TTATGCATGA
44739196 TATTACTGTATCTGT
1 TATTACTGTATCTGT
*
44739211 TATTTCTGTATCTGT
1 TATTACTGTATCTGT
44739226 GACTAGGGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (15 bp):
TATTACTGTATCTGT
Found at i:44743608 original size:24 final size:24
Alignment explanation
Indices: 44743550--44743608 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
44743540 TTCTAATTAA
**
44743550 ATTTTATAAATATTTATTATTTAT
1 ATTTTATAAATATTTAAAATTTAT
* *
44743574 -TGCTTAAAAATATTTAAAATTTAT
1 AT-TTTATAAATATTTAAAATTTAT
44743598 ATTTTATAAAT
1 ATTTTATAAAT
44743609 TAAATTATTA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
23 1 0.04
24 25 0.93
25 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTTATAAATATTTAAAATTTAT
Found at i:44750288 original size:20 final size:23
Alignment explanation
Indices: 44750265--44750319 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 23
44750255 TTTTTTAATA
44750265 ATTTTTGAATTTTTAA-A-A-AT
1 ATTTTTGAATTTTTAATATATAT
**
44750285 ATTTTTTTATTTTTAATATATAT
1 ATTTTTGAATTTTTAATATATAT
44750308 ATTTTTAGAATT
1 ATTTTT-GAATT
44750320 AAGTCTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 14 0.52
21 1 0.04
22 1 0.04
23 8 0.30
24 3 0.11
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (23 bp):
ATTTTTGAATTTTTAATATATAT
Found at i:44750290 original size:21 final size:23
Alignment explanation
Indices: 44750260--44750319 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
44750250 AATCATTTTT
*
44750260 TAATAATTTTTGAATTTTTAA-A
1 TAATATTTTTTGAATTTTTAATA
*
44750282 -AATATTTTTT-TATTTTTAATA
1 TAATATTTTTTGAATTTTTAATA
*
44750303 TATATATTTTTAGAATT
1 TA-ATATTTTTTGAATT
44750320 AAGTCTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
20 8 0.27
21 10 0.33
22 1 0.03
23 8 0.27
24 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (23 bp):
TAATATTTTTTGAATTTTTAATA
Found at i:44750305 original size:19 final size:19
Alignment explanation
Indices: 44750256--44750305 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
44750246 TATAAATCAT
44750256 TTTTTAATA-ATTTTTGAA
1 TTTTTAATATATTTTTGAA
* **
44750274 TTTTTAAAAATATTTTTTTA
1 TTTTT-AATATATTTTTGAA
44750294 TTTTTAATATAT
1 TTTTTAATATAT
44750306 ATATTTTTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 5 0.19
19 9 0.35
20 12 0.46
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTTAATATATTTTTGAA
Found at i:44751158 original size:22 final size:22
Alignment explanation
Indices: 44751130--44751179 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
44751120 CACCGCGGAC
44751130 GACGGCGCCGTCACTGGTGACT
1 GACGGCGCCGTCACTGGTGACT
44751152 GACGGCGCCGTCACTGGTGACT
1 GACGGCGCCGTCACTGGTGACT
44751174 GACGGC
1 GACGGC
44751180 TGGCAATCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.14, C:0.32, G:0.38, T:0.16
Consensus pattern (22 bp):
GACGGCGCCGTCACTGGTGACT
Found at i:44751863 original size:22 final size:22
Alignment explanation
Indices: 44751837--44751878 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
44751827 ATTTTAAATA
44751837 CATTTATTT-TATTATATCATGT
1 CATTTATTTAT-TTATATCATGT
44751859 CATTTATTTATTTATATCAT
1 CATTTATTTATTTATATCAT
44751879 TTTATATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.60
Consensus pattern (22 bp):
CATTTATTTATTTATATCATGT
Found at i:44763922 original size:44 final size:45
Alignment explanation
Indices: 44763857--44763974 Score: 132
Period size: 44 Copynumber: 2.6 Consensus size: 45
44763847 ATAGCAAACC
* * ** *
44763857 TTATCTCCCCGAAGTTGCAGTGGAGGAGGTTGAAGTTA-C-AAGTA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAA-TA
* *
44763901 TTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCGAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATA
* *
44763946 TTATTTCCCTGAAGTTGCAGTGGAACAGA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA
44763975 TTAAAACTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 32 0.52
45 28 0.45
46 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (45 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATA
Found at i:44764023 original size:96 final size:91
Alignment explanation
Indices: 44763901--44764151 Score: 304
Period size: 91 Copynumber: 2.7 Consensus size: 91
44763891 GTTACAAGTA
* * * *
44763901 TTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAG
1 TTATCTCTCTGAAGTTACAGTAGAGCAGA-T---CATAGC-AATCTTATCTCCCTGAAGTTGCAG
*
44763966 TGGAACAGATTAAAACTATAAATTACAGATC
61 TGGAACAGACTAAAACTATAAATTACAGATC
* * * *
44763997 TTATCTCTCTAAAGTTACAGTAGAGCAGATCATATCAATCTTATCTCCCTGAATTTGTAGTGGAA
1 TTATCTCTCTGAAGTTACAGTAGAGCAGATCATAGCAATCTTATCTCCCTGAAGTTGCAGTGGAA
* * **
44764062 TAGGCTAAAGTTATAAATTACAGATC
66 CAGACTAAAACTATAAATTACAGATC
** * *
44764088 TTATCTCTCTGAAGTTGTAGTAGAGCAGATCATATCAATCTTATCTCCCTGAAATTGCAGTGGA
1 TTATCTCTCTGAAGTTACAGTAGAGCAGATCATAGCAATCTTATCTCCCTGAAGTTGCAGTGGA
44764152 GCAGGTTGGA
Statistics
Matches: 137, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
91 106 0.77
92 4 0.03
95 1 0.01
96 26 0.19
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (91 bp):
TTATCTCTCTGAAGTTACAGTAGAGCAGATCATAGCAATCTTATCTCCCTGAAGTTGCAGTGGAA
CAGACTAAAACTATAAATTACAGATC
Found at i:44764165 original size:91 final size:91
Alignment explanation
Indices: 44763942--44764158 Score: 317
Period size: 91 Copynumber: 2.4 Consensus size: 91
44763932 GAAGATAGCG
* * * **
44763942 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAACTATAAATTACAGATCTTATCTCTCT
1 AATCTTATCTCCCTGAAATTGCAGTGGAACAGGTTAAAGTTATAAATTACAGATCTTATCTCTCT
44764007 AAAGTTACAGTAGAGCAGATCATATC
66 AAAGTTACAGTAGAGCAGATCATATC
* * * *
44764033 AATCTTATCTCCCTGAATTTGTAGTGGAATAGGCTAAAGTTATAAATTACAGATCTTATCTCTCT
1 AATCTTATCTCCCTGAAATTGCAGTGGAACAGGTTAAAGTTATAAATTACAGATCTTATCTCTCT
* **
44764098 GAAGTTGTAGTAGAGCAGATCATATC
66 AAAGTTACAGTAGAGCAGATCATATC
*
44764124 AATCTTATCTCCCTGAAATTGCAGTGGAGCAGGTT
1 AATCTTATCTCCCTGAAATTGCAGTGGAACAGGTT
44764159 GGAGTTACAA
Statistics
Matches: 110, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
91 110 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (91 bp):
AATCTTATCTCCCTGAAATTGCAGTGGAACAGGTTAAAGTTATAAATTACAGATCTTATCTCTCT
AAAGTTACAGTAGAGCAGATCATATC
Found at i:44764190 original size:44 final size:44
Alignment explanation
Indices: 44764134--44764250 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 44
44764124 AATCTTATCT
* * *
44764134 CCCTGAAATTGCAGTGGAGCAGGTTGGAGTTACAAAGCTTA-TA
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAGCTTATTA
* * * *
44764177 CCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTATAGATCTTATTT
1 CCC-TGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAGCTTATTA
* * *
44764222 CCCTAAAGTTGCAGTGGAGTAGATCGAAG
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG
44764251 CAACAATTCT
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
43 3 0.05
44 55 0.89
45 4 0.06
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAGCTTATTA
Found at i:44767084 original size:19 final size:19
Alignment explanation
Indices: 44767049--44767101 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
44767039 ATAAAATATT
*
44767049 AAGAGTATTACTTAATGTTTA
1 AAGATTATTA-TTAATG-TTA
44767070 AA-ATTATTATTAATGTTA
1 AAGATTATTATTAATGTTA
*
44767088 AAGTTTATTATTAA
1 AAGATTATTATTAA
44767102 AATAAATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 5 0.17
19 16 0.55
20 6 0.21
21 2 0.07
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (19 bp):
AAGATTATTATTAATGTTA
Found at i:44767295 original size:14 final size:15
Alignment explanation
Indices: 44767278--44767307 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
44767268 TATAATTCAC
44767278 TACATATTTAT-TTT
1 TACATATTTATGTTT
44767292 TACATATTTATGTTT
1 TACATATTTATGTTT
44767307 T
1 T
44767308 TCAACCACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63
Consensus pattern (15 bp):
TACATATTTATGTTT
Found at i:44768272 original size:29 final size:30
Alignment explanation
Indices: 44768240--44768299 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
44768230 ACTAAAAAAA
*
44768240 GCCGTTTTTTTTTA-AATTTA-CCGAAATGG
1 GCCGATTTTTTTTATAATTTACCCG-AATGG
*
44768269 GCCGATTTTTTTTATTATTTACCCGAATGG
1 GCCGATTTTTTTTATAATTTACCCGAATGG
44768299 G
1 G
44768300 TCATTTTCCG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 13 0.48
30 11 0.41
31 3 0.11
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.45
Consensus pattern (30 bp):
GCCGATTTTTTTTATAATTTACCCGAATGG
Found at i:44768701 original size:14 final size:14
Alignment explanation
Indices: 44768678--44768707 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
44768668 ATTTGGCTTT
*
44768678 TTTTATAAAATTAA
1 TTTTAAAAAATTAA
44768692 TTTTAAAAAATTAA
1 TTTTAAAAAATTAA
44768706 TT
1 TT
44768708 AATTATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTTAAAAAATTAA
Found at i:44769065 original size:22 final size:22
Alignment explanation
Indices: 44769017--44769129 Score: 92
Period size: 23 Copynumber: 5.1 Consensus size: 22
44769007 TTTTAATTTG
*
44769017 TTTATTATTTGTTTTTTAA-ATT
1 TTTATTATTTGTTTTATAATA-T
44769039 ATTTATTATTTGTTTTATAATAT
1 -TTTATTATTTGTTTTATAATAT
*
44769062 TTTA--A-ATGTTTTATAATAT
1 TTTATTATTTGTTTTATAATAT
* * *
44769081 TTTTTTATTCAAAT-TTTTTTAATTT
1 TTTATTATT----TGTTTTATAATAT
44769106 TTTATTATTTGTTTTATAATAT
1 TTTATTATTTGTTTTATAATAT
44769128 TT
1 TT
44769130 GTTTATTCAT
Statistics
Matches: 72, Mismatches: 9, Indels: 19
0.72 0.09 0.19
Matches are distributed among these distances:
19 16 0.22
20 1 0.01
21 2 0.03
22 15 0.21
23 19 0.26
24 1 0.01
25 17 0.24
26 1 0.01
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.68
Consensus pattern (22 bp):
TTTATTATTTGTTTTATAATAT
Found at i:44769083 original size:10 final size:10
Alignment explanation
Indices: 44769051--44769083 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
44769041 TTATTATTTG
44769051 TTTTATAATA
1 TTTTATAATA
*
44769061 TTTTA-AATG
1 TTTTATAATA
44769070 TTTTATAATA
1 TTTTATAATA
44769080 TTTT
1 TTTT
44769084 TTTATTCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTTATAATA
Found at i:44769108 original size:25 final size:26
Alignment explanation
Indices: 44769065--44769138 Score: 70
Period size: 25 Copynumber: 3.0 Consensus size: 26
44769055 ATAATATTTT
*
44769065 AAATGTTTTATAATATTTTTTTATTC
1 AAATGTTTTATAATATTTTATTATTC
* *
44769091 AAAT-TTTTTTAATTTTTTATTATT-
1 AAATGTTTTATAATATTTTATTATTC
44769115 ---TGTTTTATAATATTTGT-TTATTC
1 AAATGTTTTATAATATTT-TATTATTC
44769138 A
1 A
44769139 TACGTTTTTC
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
21 1 0.03
22 16 0.41
23 1 0.03
25 17 0.44
26 4 0.10
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.65
Consensus pattern (26 bp):
AAATGTTTTATAATATTTTATTATTC
Found at i:44769135 original size:22 final size:21
Alignment explanation
Indices: 44769021--44769136 Score: 76
Period size: 22 Copynumber: 5.2 Consensus size: 21
44769011 AATTTGTTTA
* *
44769021 TTATTTGTTTTTTAAATTATTTA
1 TTATTTGTTTTAT-AA-TATTTT
44769044 TTATTTGTTTTATAATA--TT
1 TTATTTGTTTTATAATATTTT
**
44769063 TTAAATGTTTTATAATATTTTT
1 TTATTTGTTTTATAATA-TTTT
* *
44769085 TTATTCAAAT-TTTTTTAATTTTTT
1 TTATT----TGTTTTATAATATTTT
44769109 ATTATTTGTTTTATAATATTTGT
1 -TTATTTGTTTTATAATATTT-T
44769132 TTATT
1 TTATT
44769137 CATACGTTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 21
0.70 0.10 0.20
Matches are distributed among these distances:
19 16 0.22
21 3 0.04
22 23 0.32
23 13 0.18
24 4 0.05
25 13 0.18
26 1 0.01
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.68
Consensus pattern (21 bp):
TTATTTGTTTTATAATATTTT
Found at i:44769147 original size:47 final size:47
Alignment explanation
Indices: 44769006--44769147 Score: 143
Period size: 47 Copynumber: 3.1 Consensus size: 47
44768996 CTTTTTCTAT
* *
44769006 TTTTTAATTTGTTTATTATTTGTTTTTTAA-A-TTATTTATT-ATTTG
1 TTTTTAATTT-TTTATTATTTGTTTTATAATATTTATTTATTCATATG
* * * * *
44769051 TTTTATAATATTTTA--A-ATGTTTTATAATATTTTTTTATTCAAATT
1 TTTT-TAATTTTTTATTATTTGTTTTATAATATTTATTTATTCATATG
* *
44769096 TTTTTAATTTTTTATTATTTGTTTTATAATATTTGTTTATTCATACG
1 TTTTTAATTTTTTATTATTTGTTTTATAATATTTATTTATTCATATG
44769143 TTTTT
1 TTTTT
44769148 CAGAAAATAT
Statistics
Matches: 77, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
42 9 0.12
43 2 0.03
44 17 0.22
45 14 0.18
46 6 0.08
47 29 0.38
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (47 bp):
TTTTTAATTTTTTATTATTTGTTTTATAATATTTATTTATTCATATG
Found at i:44774217 original size:2 final size:2
Alignment explanation
Indices: 44774210--44774242 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
44774200 AGATCCATAC
44774210 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
44774243 GGTGTTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:44775073 original size:20 final size:20
Alignment explanation
Indices: 44775050--44775087 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
44775040 AATGTTAAAT
* *
44775050 TATATAAATTAAAATTAGCA
1 TATAAAAATGAAAATTAGCA
44775070 TATAAAAATGAAAATTAG
1 TATAAAAATGAAAATTAG
44775088 AAGGTAAGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (20 bp):
TATAAAAATGAAAATTAGCA
Found at i:44776319 original size:22 final size:22
Alignment explanation
Indices: 44776284--44776326 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
44776274 ATTTTCTAAC
*
44776284 AGATTTAATAAATAAATTCAAG
1 AGATTAAATAAATAAATTCAAG
*
44776306 AGATTAAATGAATAAATTCAA
1 AGATTAAATAAATAAATTCAA
44776327 TGTTTCAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.05, G:0.09, T:0.30
Consensus pattern (22 bp):
AGATTAAATAAATAAATTCAAG
Found at i:44777045 original size:13 final size:14
Alignment explanation
Indices: 44777020--44777050 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
44777010 TGATGTGTTT
44777020 TAAACTAAATTTAC
1 TAAACTAAATTTAC
44777034 TAAACT-AATTTAC
1 TAAACTAAATTTAC
44777047 TAAA
1 TAAA
44777051 AACTCAACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (14 bp):
TAAACTAAATTTAC
Found at i:44783148 original size:23 final size:24
Alignment explanation
Indices: 44783104--44783149 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
44783094 TTTCTCACAT
* **
44783104 TTTCAAGTCAATCATTTTTCCACC
1 TTTCAAGTCAATAATTAATCCACC
44783128 TTTCAA-TCAATAATTAATCCAC
1 TTTCAAGTCAATAATTAATCCAC
44783150 AAACTCACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.33, C:0.26, G:0.02, T:0.39
Consensus pattern (24 bp):
TTTCAAGTCAATAATTAATCCACC
Found at i:44783303 original size:3 final size:3
Alignment explanation
Indices: 44783295--44783356 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
44783285 TCACTCATCT
44783295 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
44783343 TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TA
44783357 CTTACCTCAC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:44783997 original size:17 final size:17
Alignment explanation
Indices: 44783963--44783996 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
44783953 GAATGGTCTC
*
44783963 TGTTTCTTTTCTTCTTT
1 TGTTTCTTTTATTCTTT
44783980 TGTTTCTTTTATT-TTT
1 TGTTTCTTTTATTCTTT
44783996 T
1 T
44783997 TATTTTATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.03, C:0.12, G:0.06, T:0.79
Consensus pattern (17 bp):
TGTTTCTTTTATTCTTT
Found at i:44784052 original size:22 final size:24
Alignment explanation
Indices: 44784022--44784071 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
44784012 ATGTATTAGT
*
44784022 TAATAATAATAATAACAATATATTA
1 TAATAATCAT-ATAACAATATATTA
* *
44784047 TAATAATCATATAATAATATTTTA
1 TAATAATCATATAACAATATATTA
44784071 T
1 T
44784072 TCACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (24 bp):
TAATAATCATATAACAATATATTA
Found at i:44787926 original size:7 final size:6
Alignment explanation
Indices: 44787889--44787924 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
44787879 AATTAGAATG
* *
44787889 TAAAAA TTAAAC TAAAAA TAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
44787925 ATGACTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:44798761 original size:72 final size:72
Alignment explanation
Indices: 44798644--44798811 Score: 223
Period size: 72 Copynumber: 2.3 Consensus size: 72
44798634 TCTCTAAATC
* *
44798644 TGTTTCTTCCCCTA-CTGCTGATGACTTTCTTTCTGCAGCCATTGAAGACGTTTCTTTTTCAGCC
1 TGTTTCTTCCCC-AGTTGCTGATGACCTTCTTTCTGCAGCCATTGAAGACGTTTCTTTTTCAGCC
44798708 ATTGAAGA
65 ATTGAAGA
* * * *
44798716 TGTTTCTTCCCCAGTTGCTGATGACGCTTGTTT-TTCAGTCATTGAAGGCGTTTCTTTTTCAGCC
1 TGTTTCTTCCCCAGTTGCTGATGAC-CTTCTTTCTGCAGCCATTGAAGACGTTTCTTTTTCAGCC
*
44798780 ATTGAAGT
65 ATTGAAGA
* *
44798788 TGTTTCTGCCCCTGTTGCTGATGA
1 TGTTTCTTCCCCAGTTGCTGATGA
44798812 GTCTCCTTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
71 1 0.01
72 79 0.93
73 5 0.06
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.42
Consensus pattern (72 bp):
TGTTTCTTCCCCAGTTGCTGATGACCTTCTTTCTGCAGCCATTGAAGACGTTTCTTTTTCAGCCA
TTGAAGA
Found at i:44798794 original size:24 final size:24
Alignment explanation
Indices: 44798669--44798786 Score: 101
Period size: 24 Copynumber: 4.9 Consensus size: 24
44798659 TGCTGATGAC
*
44798669 TTTCTTTCTGCAGCCATTGAAGACG
1 TTTCTTT-TTCAGCCATTGAAGACG
*
44798694 TTTCTTTTTCAGCCATTGAAGATG
1 TTTCTTTTTCAGCCATTGAAGACG
*** **** *
44798718 TTTCTTCCCCAGTTGCTGATGACG
1 TTTCTTTTTCAGCCATTGAAGACG
* * * *
44798742 CTTGTTTTTCAGTCATTGAAGGCG
1 TTTCTTTTTCAGCCATTGAAGACG
44798766 TTTCTTTTTCAGCCATTGAAG
1 TTTCTTTTTCAGCCATTGAAG
44798787 TTGTTTCTGC
Statistics
Matches: 69, Mismatches: 24, Indels: 1
0.73 0.26 0.01
Matches are distributed among these distances:
24 62 0.90
25 7 0.10
ACGTcount: A:0.18, C:0.21, G:0.19, T:0.42
Consensus pattern (24 bp):
TTTCTTTTTCAGCCATTGAAGACG
Found at i:44798822 original size:72 final size:72
Alignment explanation
Indices: 44798679--44798835 Score: 226
Period size: 72 Copynumber: 2.2 Consensus size: 72
44798669 TTTCTTTCTG
*
44798679 CAGCCATTGAAGACGTTTCTTTTTCAGCCATTGAAGATGTTTCTTCCCCAGTTGCTGATGACGCT
1 CAGCCATTGAAGACGTTTCTTTTTCAGCCATTGAAGATGTTTCTGCCCCAGTTGCTGATGACGCT
**
44798744 TGTTTTT
66 CCTTTTT
* * * *
44798751 CAGTCATTGAAGGCGTTTCTTTTTCAGCCATTGAAGTTGTTTCTGCCCCTGTTGCTGATGA-GTC
1 CAGCCATTGAAGACGTTTCTTTTTCAGCCATTGAAGATGTTTCTGCCCCAGTTGCTGATGACG-C
44798815 TCCTTTTT
65 TCCTTTTT
*
44798823 CAGCCATTTAAGA
1 CAGCCATTGAAGA
44798836 AGAAAAGAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
71 1 0.01
72 73 0.99
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (72 bp):
CAGCCATTGAAGACGTTTCTTTTTCAGCCATTGAAGATGTTTCTGCCCCAGTTGCTGATGACGCT
CCTTTTT
Found at i:44801297 original size:13 final size:13
Alignment explanation
Indices: 44801279--44801303 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44801269 TATTTTAATA
44801279 TTATTTTGTGTGT
1 TTATTTTGTGTGT
44801292 TTATTTTGTGTG
1 TTATTTTGTGTG
44801304 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:44803042 original size:41 final size:41
Alignment explanation
Indices: 44802993--44803096 Score: 163
Period size: 41 Copynumber: 2.5 Consensus size: 41
44802983 GACTTTACGT
*
44802993 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
* *
44803034 CTAGCAGGCTAAGTGTCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
* *
44803075 TTAGCAGGTTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
44803097 ATATGTTAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
Found at i:44804989 original size:15 final size:16
Alignment explanation
Indices: 44804958--44804990 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
44804948 ATATCCTTTT
*
44804958 AAATTTCAAACACATA
1 AAATTTCAAACAAATA
44804974 AAATTTCAAA-AAATA
1 AAATTTCAAACAAATA
44804989 AA
1 AA
44804991 GGCAATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (16 bp):
AAATTTCAAACAAATA
Found at i:44806273 original size:33 final size:36
Alignment explanation
Indices: 44806204--44806273 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 36
44806194 GAAATTAATA
44806204 TTTTAAATATTTTTTATATTTATATAAATCATTGAT
1 TTTTAAATATTTTTTATATTTATATAAATCATTGAT
* *
44806240 TTTTAAATA-TTTTTATTTTTA-ATAATTCA-TGAT
1 TTTTAAATATTTTTTATATTTATATAAATCATTGAT
44806273 T
1 T
44806274 AAATTAGGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
33 5 0.16
34 7 0.22
35 11 0.34
36 9 0.28
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (36 bp):
TTTTAAATATTTTTTATATTTATATAAATCATTGAT
Found at i:44823332 original size:21 final size:22
Alignment explanation
Indices: 44823294--44823335 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
44823284 AAAAACAAGA
*
44823294 ATAAATAATTGTCATCTTAATC
1 ATAAACAATTGTCATCTTAATC
44823316 ATAAACAATTG-CATCTTAAT
1 ATAAACAATTGTCATCTTAAT
44823336 TCCTTCAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.38
Consensus pattern (22 bp):
ATAAACAATTGTCATCTTAATC
Found at i:44828818 original size:37 final size:37
Alignment explanation
Indices: 44828740--44828824 Score: 98
Period size: 37 Copynumber: 2.3 Consensus size: 37
44828730 TTTCCTCATG
* * * *
44828740 TTTCAAGTTATGACGGTCCGCTGGACTTGCCCTCATG
1 TTTCAAGTTATGACGATCCGCTAGACTTGCCCACATA
** * *
44828777 TTTCAAGTTATGACGATTTGCTAGCCTTTCCCACATA
1 TTTCAAGTTATGACGATCCGCTAGACTTGCCCACATA
44828814 TTTCAAGTTAT
1 TTTCAAGTTAT
44828825 AACAGTTCGT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.38
Consensus pattern (37 bp):
TTTCAAGTTATGACGATCCGCTAGACTTGCCCACATA
Found at i:44829081 original size:26 final size:26
Alignment explanation
Indices: 44829052--44829158 Score: 142
Period size: 26 Copynumber: 4.1 Consensus size: 26
44829042 AATAGTCTAT
44829052 AAGGACTATTTCAAGTATGAGTCCGC
1 AAGGACTATTTCAAGTATGAGTCCGC
* *
44829078 AAGGACTATTTCATGTATGAGTCTGC
1 AAGGACTATTTCAAGTATGAGTCCGC
** * **
44829104 AAATACTATTTCAAGCATGAGTCCAA
1 AAGGACTATTTCAAGTATGAGTCCGC
44829130 AAGGACTATTATCAAGTATGAGTCCGC
1 AAGGACTATT-TCAAGTATGAGTCCGC
44829157 AA
1 AA
44829159 AGATTTCTTA
Statistics
Matches: 66, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
26 51 0.77
27 15 0.23
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (26 bp):
AAGGACTATTTCAAGTATGAGTCCGC
Found at i:44840880 original size:182 final size:182
Alignment explanation
Indices: 44840570--44840938 Score: 578
Period size: 182 Copynumber: 2.0 Consensus size: 182
44840560 ATGGTTAAAT
* *
44840570 TTTGATATATAAAACCATTTGATCATGCCTTGTCTCTTGTACACGATGACTTGGTTGAGGATGGC
1 TTTGATATATAAAACCATTTGATCATGCCTTGTCTCTTGTACACGATGACTTGATCGAGGATGGC
*
44840635 CAGAACAACACGACTTTAATGTAATGGATTAATTTGCTTTATTTACCAAAAAAAAACATATATAT
66 CAGAACAACACGACTTTAATGTAATGGATTAATTTACTTTATTTACCAAAAAAAAACATATATAT
*
44840700 ATTTATAAAGTCTTTAAGAAAACATATAAATGGTTAAATTTTGATATTTTGA
131 ATCTATAAAGTCTTTAAGAAAACATATAAATGGTTAAATTTTGATATTTTGA
* * * * *
44840752 TTTGATATATAAAATCATTTGATTATGTCTTGTCTCTTGTTCATGATGACTTGATCGAGGATGGC
1 TTTGATATATAAAACCATTTGATCATGCCTTGTCTCTTGTACACGATGACTTGATCGAGGATGGC
* * * * *
44840817 CAGAACAACACGACTTTAATTTAATGGATTAATTTACTTTATTTA-CAATATATATATATATATA
66 CAGAACAACACGACTTTAATGTAATGGATTAATTTACTTTATTTACCAA-AAAAAAACATATATA
* *
44840881 TATCTATAAAGTCTTTACGAAAGCATATAAATGGTTAAATTTTGATATTTTGA
130 TATCTATAAAGTCTTTAAGAAAACATATAAATGGTTAAATTTTGATATTTTGA
44840934 TTTGA
1 TTTGA
44840939 AAATTTAAGT
Statistics
Matches: 170, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
181 3 0.02
182 167 0.98
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.40
Consensus pattern (182 bp):
TTTGATATATAAAACCATTTGATCATGCCTTGTCTCTTGTACACGATGACTTGATCGAGGATGGC
CAGAACAACACGACTTTAATGTAATGGATTAATTTACTTTATTTACCAAAAAAAAACATATATAT
ATCTATAAAGTCTTTAAGAAAACATATAAATGGTTAAATTTTGATATTTTGA
Found at i:44843495 original size:26 final size:26
Alignment explanation
Indices: 44843333--44843497 Score: 112
Period size: 26 Copynumber: 6.6 Consensus size: 26
44843323 TATCCGGAGA
* *
44843333 TCCTGATTAAAGGCTCTTCGTGAGCT
1 TCCTGATTAATGGCTCTTTGTGAGCT
** * *
44843359 TCCTGATTAAAAGTTCTTTGTGAACT
1 TCCTGATTAATGGCTCTTTGTGAGCT
* *
44843385 TCCTGATT-ATGACTC-TTATGAGCT
1 TCCTGATTAATGGCTCTTTGTGAGCT
* **** *
44843409 TCCTG-TTATATAGC-CCGAATAAGCT
1 TCCTGATTA-ATGGCTCTTTGTGAGCT
* *
44843434 TTCTGA--GA-GGCTCTTTGTGAGCT
1 TCCTGATTAATGGCTCTTTGTGAGCT
44843457 TCCTGATTAATGGCTCTTTGTGAGCT
1 TCCTGATTAATGGCTCTTTGTGAGCT
44843483 TCCTG-TTATATGGCT
1 TCCTGATTA-ATGGCT
44843498 TGAGAGAGGA
Statistics
Matches: 105, Mismatches: 25, Indels: 18
0.71 0.17 0.12
Matches are distributed among these distances:
22 2 0.02
23 14 0.13
24 13 0.12
25 20 0.19
26 56 0.53
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (26 bp):
TCCTGATTAATGGCTCTTTGTGAGCT
Found at i:44844554 original size:72 final size:72
Alignment explanation
Indices: 44844415--44844556 Score: 214
Period size: 73 Copynumber: 2.0 Consensus size: 72
44844405 CTCGGATTTG
* * *
44844415 AAAAAGGGATCATGCCCAGTAAGTTAGGATACGATCTTTTCTTAATTCCTGAGATCGTTTAAAAC
1 AAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAAC
44844480 TTGAGAA
66 TTGAGAA
* * *
44844487 AAAAAGGGGATCATGCCCAGTAAGTTAGGACATGATCTCTTCTTGA-TCCCGAGATCGTTTAATA
1 AAAAA-GGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
44844551 CTTGAG
65 CTTGAG
44844557 TTTGAAAAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
72 27 0.43
73 36 0.57
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (72 bp):
AAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAAC
TTGAGAA
Found at i:44846886 original size:88 final size:88
Alignment explanation
Indices: 44846751--44847918 Score: 1653
Period size: 88 Copynumber: 13.3 Consensus size: 88
44846741 TTTTAATCCG
* * * * * *
44846751 CTCCACTGCAGCTTAAGGAGAT-AGGATTGTGTCTTCGATCTACTTCGCTGCTAATACAGGAAGG
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
* *
44846815 CAAGATCTACTATTTTCAACCTA
66 CAAGATCTGCTATCTTCAACCTA
*
44846838 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAAGAAGA
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
* *
44846903 TAAGATCTGCTATTTTCAACCTA
66 CAAGATCTGCTATCTTCAACCTA
* *
44846926 CTCCACTGTTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAAGAAGA
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
* *
44846991 TAAGATCTGCTATTTTCAACCTA
66 CAAGATCTGCTATCTTCAACCTA
* * * *
44847014 CTCCACTGCGGTTAAGAGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
44847079 CAAGATCTGCTATCTTCAACCTA
66 CAAGATCTGCTATCTTCAACCTA
*
44847102 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGAAAGA
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
*
44847167 CAAGATCTGCTGTCTTCAACCTA
66 CAAGATCTGCTATCTTCAACCTA
* *
44847190 CTCCACTACTGCTTAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
*
44847255 CAAGATCTGCTAT-TTTAACCTA
66 CAAGATCTGCTATCTTCAACCTA
* * * * * * * * * * *
44847277 GTTCATTACTACTAAAGGAGATAATGTTTGCGTCTTAGATCTACTTCGTTGCCAATACAGGAAGA
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
*
44847342 AAAGATCTGCTATCTTCAACCTA
66 CAAGATCTGCTATCTTCAACCTA
* * * *
44847365 CTCCACTGCTACTCAGGGAGATAAAGTTTGTGTCTTCGATCTACTTCGTTGCCAATACAGAAAGA
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
*
44847430 CAAAATCTGCTATCTTCAACCTA
66 CAAGATCTGCTATCTTCAACCTA
* * * * *
44847453 CTTCACTACTGCTTAGGGAGATAAGGTTTGTGTCTTCAATCTACTTCGCTGCCAATACAAGAAGA
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
*
44847518 CAAGATCTGCTATCTTCAACTTA
66 CAAGATCTGCTATCTTCAACCTA
* **
44847541 CTCCACTGCTGCTCAGGGAGATAAGATTTGTGTCTTCGATCTACTTCGCTGTTAATACAGGAAGA
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
* *
44847606 CAAGATCTGCTATTTTCAACCAA
66 CAAGATCTGCTATCTTCAACCTA
* * *
44847629 CTCCACTGCTACTAAGAGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
*
44847694 CAAGATCTGCCA-CATTCAACCTA
66 CAAGATCTGCTATC-TTCAACCTA
* * *
44847717 CTCCAGTGTTGCTCAGGGAGATGAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
*
44847782 CAAGATCTGTTATCTTCAACCTA
66 CAAGATCTGCTATCTTCAACCTA
* * * * * * *
44847805 CTCCACTACAGCTTAGGGAGATAAGGTTTGTGTTTTTGATTTACTTCGCTGCCAAT--AGGAAGG
1 CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
*
44847868 CAAGATCTACTATCTTCAACCTA
66 CAAGATCTGCTATCTTCAACCTA
* * *
44847891 CTCTACTACTGCTTAGGGAGATAAGGTT
1 CTCCACTGCTGCTCAGGGAGATAAGGTT
44847919 GGTTTCACCG
Statistics
Matches: 971, Mismatches: 106, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
86 53 0.05
87 94 0.10
88 823 0.85
89 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (88 bp):
CTCCACTGCTGCTCAGGGAGATAAGGTTTGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGA
CAAGATCTGCTATCTTCAACCTA
Found at i:44852162 original size:2 final size:2
Alignment explanation
Indices: 44852155--44852181 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
44852145 AGACCGATCC
44852155 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
44852182 TTATTTACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:44853371 original size:41 final size:41
Alignment explanation
Indices: 44853321--44853404 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
44853311 TTGATCTCAG
* * *
44853321 TTTCGCACACTTAGTGCCCGTTATTTAACATCATTATTTAA
1 TTTCACACACTTAGTGCCCGTTATTCAACATCATCATTTAA
* *
44853362 TTTCACACACTTAGTGCTCGTTATTCAACCTCATCATTTAA
1 TTTCACACACTTAGTGCCCGTTATTCAACATCATCATTTAA
44853403 TT
1 TT
44853405 AGCACACTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.26, C:0.24, G:0.08, T:0.42
Consensus pattern (41 bp):
TTTCACACACTTAGTGCCCGTTATTCAACATCATCATTTAA
Found at i:44857582 original size:73 final size:72
Alignment explanation
Indices: 44857461--44857603 Score: 223
Period size: 73 Copynumber: 2.0 Consensus size: 72
44857451 CTCGGATTTG
* *
44857461 AAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTTTTCTTAATTCCTGAGATCGTTTAAAAC
1 AAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTTAATTCCCGAGATCGTTTAAAAC
44857526 TTGAGAA
66 TTGAGAA
** * *
44857533 AAAAAGGGGATCATGCCCAGTAAGTTAGGACATGATCTCTTCTTGATTCCCGAGATCGTTTAATA
1 AAAAA-GGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTTAATTCCCGAGATCGTTTAAAA
44857598 CTTGAG
65 CTTGAG
44857604 TTTGAAAAGA
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
72 5 0.08
73 59 0.92
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (72 bp):
AAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTTAATTCCCGAGATCGTTTAAAAC
TTGAGAA
Found at i:44858386 original size:3 final size:3
Alignment explanation
Indices: 44858257--44858368 Score: 72
Period size: 3 Copynumber: 36.7 Consensus size: 3
44858247 TAAATGAATA
* *
44858257 AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT ACAA AACT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA-T AAT
* * * *
44858304 AAT -AT GAT -AT AAT AAT -AT TAT AAT GAAT AGAT AA- ATAT AAA AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT A-AT AAT A-AT AAT AAT
44858348 AA- AAT AAT AAGT AGAT AAT AA
1 AAT AAT AAT AA-T A-AT AAT AA
44858369 GTAGATTAAT
Statistics
Matches: 90, Mismatches: 7, Indels: 24
0.74 0.06 0.20
Matches are distributed among these distances:
2 9 0.10
3 65 0.72
4 15 0.17
5 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:44874029 original size:82 final size:87
Alignment explanation
Indices: 44873937--44874109 Score: 275
Period size: 90 Copynumber: 2.0 Consensus size: 87
44873927 TGATGTAAAT
44873937 TTAAAACTTCTAACTATTTGTTTTATG-TAAAAAAAA-TCAACCGTTG-A-ATAT-ATATATTAA
1 TTAAAACTTCTAACTATTTGTTTTATGATAAAAAAAATTCAACCGTTGAATATATAATATATTAA
*
44873997 TATATTGAGTGCTTTAGATTAA
66 TATATTGAGTACTTTAGATTAA
44874019 TTAAAACTTCTAACTATTTGTTTTATGTAATAAAAAAAATTCAACCGTTGAATATATACATATAT
1 TTAAAACTTCTAACTATTTGTTTTATG--ATAAAAAAAATTCAACCGTTGAATATATA-ATATAT
44874084 TAATATATTGAGTACTTTAGATTAA
63 TAATATATTGAGTACTTTAGATTAA
44874109 T
1 T
44874110 ATGAAAGAGA
Statistics
Matches: 82, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
82 27 0.33
85 9 0.11
86 10 0.12
87 1 0.01
88 4 0.05
90 31 0.38
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.42
Consensus pattern (87 bp):
TTAAAACTTCTAACTATTTGTTTTATGATAAAAAAAATTCAACCGTTGAATATATAATATATTAA
TATATTGAGTACTTTAGATTAA
Found at i:44879642 original size:15 final size:15
Alignment explanation
Indices: 44879622--44879658 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
44879612 GTGTATACAA
44879622 AGTAAAAGGAATGAC
1 AGTAAAAGGAATGAC
44879637 AGTAAAAGGAATGAC
1 AGTAAAAGGAATGAC
44879652 AGTAAAA
1 AGTAAAA
44879659 TTATTAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.57, C:0.05, G:0.24, T:0.14
Consensus pattern (15 bp):
AGTAAAAGGAATGAC
Found at i:44880961 original size:48 final size:48
Alignment explanation
Indices: 44880909--44881007 Score: 171
Period size: 48 Copynumber: 2.1 Consensus size: 48
44880899 GGAGGATCTT
* *
44880909 GAATAAATCTATTGAGAAATATAAATATGGAATAAATTGGTTAAAATA
1 GAATAAATCTATTGAGAAATATAAATATGAAATAAATTGGTCAAAATA
*
44880957 GAATAAATCTATTGAGAAATATAGATATGAAATAAATTGGTCAAAATA
1 GAATAAATCTATTGAGAAATATAAATATGAAATAAATTGGTCAAAATA
44881005 GAA
1 GAA
44881008 AGACGCAACT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.29
Consensus pattern (48 bp):
GAATAAATCTATTGAGAAATATAAATATGAAATAAATTGGTCAAAATA
Found at i:44880995 original size:25 final size:25
Alignment explanation
Indices: 44880919--44880995 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
44880909 GAATAAATCT
* *
44880919 ATTGAGAAATATAAATATGGAATAA
1 ATTGAGAAATATAGATATGAAATAA
**
44880944 ATTG-GTTAAA-ATAGA-AT-AAATCT
1 ATTGAG--AAATATAGATATGAAATAA
44880967 ATTGAGAAATATAGATATGAAATAA
1 ATTGAGAAATATAGATATGAAATAA
44880992 ATTG
1 ATTG
44880996 GTCAAAATAG
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
22 3 0.08
23 12 0.30
24 6 0.15
25 16 0.40
26 3 0.08
ACGTcount: A:0.52, C:0.01, G:0.16, T:0.31
Consensus pattern (25 bp):
ATTGAGAAATATAGATATGAAATAA
Found at i:44881005 original size:25 final size:24
Alignment explanation
Indices: 44880933--44881006 Score: 64
Period size: 25 Copynumber: 3.0 Consensus size: 24
44880923 AGAAATATAA
*
44880933 ATATGGAATAAATTGGTTAAAATAG
1 ATATGAAATAAATTGG-TAAAATAG
**
44880958 A-AT-AAATCTATTGAG-AAATATAG
1 ATATGAAATAAATTG-GTAAA-ATAG
44880981 ATATGAAATAAATTGGTCAAAATAG
1 ATATGAAATAAATTGGT-AAAATAG
44881006 A
1 A
44881007 AAGACGCAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
22 3 0.08
23 12 0.32
24 6 0.16
25 14 0.37
26 3 0.08
ACGTcount: A:0.51, C:0.03, G:0.16, T:0.30
Consensus pattern (24 bp):
ATATGAAATAAATTGGTAAAATAG
Found at i:44887393 original size:29 final size:31
Alignment explanation
Indices: 44887337--44887398 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 31
44887327 ATACATTTGA
* *
44887337 ACCACAATTAAAGTTTCGTGTGTAAAATTGC
1 ACCACAATTAAAGTCTCGTGTATAAAATTGC
*
44887368 ACCA-AATTAAAG-CTCGTGTATCAAATTGC
1 ACCACAATTAAAGTCTCGTGTATAAAATTGC
44887397 AC
1 AC
44887399 ATTAAATCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 16 0.57
30 8 0.29
31 4 0.14
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (31 bp):
ACCACAATTAAAGTCTCGTGTATAAAATTGC
Found at i:44895510 original size:15 final size:16
Alignment explanation
Indices: 44895482--44895519 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
44895472 TAAAGTTTAG
44895482 GGGGAATAAAAAGTTT
1 GGGGAATAAAAAGTTT
44895498 GGGGAAT-AAAAGTTT
1 GGGGAATAAAAAGTTT
44895513 GAGGGAA
1 G-GGGAA
44895520 AGTAAATAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.42, C:0.00, G:0.37, T:0.21
Consensus pattern (16 bp):
GGGGAATAAAAAGTTT
Found at i:44895888 original size:9 final size:9
Alignment explanation
Indices: 44895874--44895910 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
44895864 TATAGTTTGA
44895874 TATTCGAAT
1 TATTCGAAT
44895883 TATTCGAAT
1 TATTCGAAT
*
44895892 TATTCGAGT
1 TATTCGAAT
*
44895901 TATTTGAAT
1 TATTCGAAT
44895910 T
1 T
44895911 TGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:44897483 original size:28 final size:29
Alignment explanation
Indices: 44897446--44897507 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 29
44897436 GAAAAAAATA
*
44897446 AAAATTTATTCT-AAAA-GAGAATAAAAG
1 AAAATTTATTCTAAAAATAAGAATAAAAG
*
44897473 AAAATTCTATTCTAAAAATAAGAATAAAAT
1 AAAATT-TATTCTAAAAATAAGAATAAAAG
44897503 AAAAT
1 AAAAT
44897508 AAAAGAGAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 6 0.20
28 6 0.20
29 4 0.13
30 14 0.47
ACGTcount: A:0.61, C:0.05, G:0.06, T:0.27
Consensus pattern (29 bp):
AAAATTTATTCTAAAAATAAGAATAAAAG
Found at i:44898552 original size:22 final size:21
Alignment explanation
Indices: 44898502--44898550 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
44898492 AGGACATTGC
*
44898502 CTTTCTCCATCTTCCATCAAAT
1 CTTTTTCCATCTTCCAT-AAAT
44898524 CTTTTTCCATCTCTCCAT-AAT
1 CTTTTTCCATCT-TCCATAAAT
44898545 CTTTTT
1 CTTTTT
44898551 TCTATCTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 9 0.36
22 11 0.44
23 5 0.20
ACGTcount: A:0.18, C:0.33, G:0.00, T:0.49
Consensus pattern (21 bp):
CTTTTTCCATCTTCCATAAAT
Found at i:44904953 original size:24 final size:24
Alignment explanation
Indices: 44904899--44904958 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
44904889 TTAAAATATC
* *
44904899 ATTTAAAATCTATTTATCTGAATT
1 ATTTAAAATCTATTTAACTAAATT
* *
44904923 CTGTAAAATCTATTTAACTAAATT
1 ATTTAAAATCTATTTAACTAAATT
44904947 ATTTAAATATCT
1 ATTTAAA-ATCT
44904959 TATATAAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
24 25 0.86
25 4 0.14
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (24 bp):
ATTTAAAATCTATTTAACTAAATT
Found at i:44907794 original size:21 final size:21
Alignment explanation
Indices: 44907757--44907811 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
44907747 AATCATATAT
44907757 TCCAAGATTGC--ATATCATA
1 TCCAAGATTGCATATATCATA
44907776 TCCAAGATTGCATATATCATA
1 TCCAAGATTGCATATATCATA
* *
44907797 TCTAAGATTGTATAT
1 TCCAAGATTGCATAT
44907812 CCTTGAAGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.34
21 21 0.66
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (21 bp):
TCCAAGATTGCATATATCATA
Found at i:44908238 original size:44 final size:44
Alignment explanation
Indices: 44908185--44908482 Score: 375
Period size: 44 Copynumber: 6.8 Consensus size: 44
44908175 ACCAGAATGG
* * * * * *
44908185 GAAGACAAGATCTGCTACCTTTGATCTATTTCATGCCGATAAAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* * *
44908229 GAAGACAAGATCTGTTTTCTTCGATCTACTT--CGCCAATATAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* * * * ***
44908271 GAAGACAAGATCTACTTTCTTCGATCTACTTCACCACCAGTATGG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCA-CGCCAATACAT
**
44908316 GAAGACAAGATCTATTATCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
*
44908360 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* *
44908404 GAAGACAAGATCTGCTATATTTGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
*
44908448 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACG
44908483 ACAACCCAGG
Statistics
Matches: 223, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
42 37 0.17
44 148 0.66
45 38 0.17
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
Found at i:44908545 original size:88 final size:88
Alignment explanation
Indices: 44908442--44909031 Score: 792
Period size: 88 Copynumber: 6.7 Consensus size: 88
44908432 CTTCACGCCA
* * * * * * * *
44908442 ATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGACAACCCAGGGAGGCAAGGCTGGT
1 ATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGT
*
44908507 ATCTTTGATCTGCTTCACTGTCG
66 ATCTTCGATCTGCTTCACTGTCG
* *
44908530 GTACAGGAAAGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGT
1 ATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGT
*
44908595 ATTTTCGATCTGCTTCACTGTC-
66 ATCTTCGATCTGCTTCACTGTCG
* *
44908617 AGTACAGGAAGACAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGACAAGGCTGG
1 A-TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGG
* * *
44908682 TATCTTCGATCAGCTACGCTGTCG
65 TATCTTCGATCTGCTTCACTGTCG
** *
44908706 ATGTAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGAGAGGCAAGGCTGGT
1 ATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGT
*
44908771 ATCTTCGATCTGCTTCGCTGTCG
66 ATCTTCGATCTGCTTCACTGTCG
* * * * *
44908794 ATGCAAGAAGGCAAGATTTGCTATTTTCAACCTGCTCCACTACAACCCAGAGAGGCAAGGCTGGT
1 ATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGT
44908859 ATCTTCGATCTGCTTCGA-TGTCG
66 ATCTTCGATCTGCTTC-ACTGTCG
* *
44908882 ATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGT
1 ATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGT
*
44908947 ATCTTCGATCTGCTTC-GTCGTC-
66 ATCTTCGATCTGCTTCACT-GTCG
* * * * * * *
44908969 AGTACAGGAGGGCAAGATCTGTTATTTTCAACCTGCTCCGCTGCAAACCAGGAAGGCAAGGCT
1 A-TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCT
44909032 TTGTGATTTC
Statistics
Matches: 450, Mismatches: 46, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
87 2 0.00
88 447 0.99
89 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (88 bp):
ATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGT
ATCTTCGATCTGCTTCACTGTCG
Found at i:44908545 original size:132 final size:132
Alignment explanation
Indices: 44908229--44908553 Score: 318
Period size: 132 Copynumber: 2.5 Consensus size: 132
44908219 GCCGATAAAT
* * * * * * * * *
44908229 GAAGACAAGATCTGTTTTCTTCGATCTACTT--CGCCAATATATGAAGACAAGATCTACTTTCTT
1 GAAGACAAGAGCTGCTATCTTTGATCTACTTCACGCCAATACAGGAAGACAAGATCTGCTATATT
* * * *** * *
44908292 CGATCTACTTCACCACCAGTATGGGAAGACAAGATCTATTATCTTCGATCTACTTCACGCCAATA
66 TGATCTACTTCA-CGCCAATACATGAAGACAAGATCTATTATCTTCGATCTACTTCACGACAACA
*
44908357 CAT
130 CAG
* *
44908360 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATATT
1 GAAGACAAGAGCTGCTATCTTTGATCTACTTCACGCCAATACAGGAAGACAAGATCTGCTATATT
* *
44908425 TGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT-TCTTCGATCTACTTCACGACAACC
66 TGATCTACTTCACGCCAATACATGAAGACAAGATCT-ATTATCTTCGATCTACTTCACGACAACA
44908489 CAG
130 CAG
* * * * * **
44908492 GGAGGCAAG-GCTGGTATCTTTGATCTGCTTCACTGTCGGTACAGGAA-AGCAAGATCTGCTAT
1 GAAGACAAGAGCTGCTATCTTTGATCTACTTCAC-GCCAATACAGGAAGA-CAAGATCTGCTAT
44908554 CTTCAACCTG
Statistics
Matches: 162, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
131 50 0.31
132 71 0.44
133 41 0.25
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (132 bp):
GAAGACAAGAGCTGCTATCTTTGATCTACTTCACGCCAATACAGGAAGACAAGATCTGCTATATT
TGATCTACTTCACGCCAATACATGAAGACAAGATCTATTATCTTCGATCTACTTCACGACAACAC
AG
Found at i:44908565 original size:45 final size:44
Alignment explanation
Indices: 44908516--44908746 Score: 132
Period size: 45 Copynumber: 5.2 Consensus size: 44
44908506 TATCTTTGAT
* *
44908516 CTGCTTCACTGTCGGTACAGGAAAGCAAGATCTGCTATCTTCAAC
1 CTGCTCCACTGTCAGTACAGG-AAGCAAGATCTGCTATCTTCAAC
* *** * * * * * *
44908561 CTGCTCCACT-ACAACCCAGGGAGGCAAG-GCTGGTATTTTCGAT
1 CTGCTCCACTGTCAGTACA-GGAAGCAAGATCTGCTATCTTCAAC
*
44908604 CTGCTTCACTGTCAGTACAGGAAGACAAGATCTGCTATCTTCAAC
1 CTGCTCCACTGTCAGTACAGGAAG-CAAGATCTGCTATCTTCAAC
* *** * * * * *
44908649 CTGCTCCACT-ACAACCCAGGGAGACAAG-GCTGGTATCTTCGAT
1 CTGCTCCACTGTCAGTACAGGAAG-CAAGATCTGCTATCTTCAAC
* * *
44908692 CAGCTACGCTGTCGATGT--AGGAAGGCAAGATCTGCTATCTTCAAC
1 CTGCTCCACTGTC-A-GTACAGGAA-GCAAGATCTGCTATCTTCAAC
44908737 CTGCTCCACT
1 CTGCTCCACT
44908747 ACAACCCAGA
Statistics
Matches: 130, Mismatches: 47, Indels: 18
0.67 0.24 0.09
Matches are distributed among these distances:
43 41 0.32
44 39 0.30
45 50 0.38
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (44 bp):
CTGCTCCACTGTCAGTACAGGAAGCAAGATCTGCTATCTTCAAC
Found at i:44915916 original size:19 final size:19
Alignment explanation
Indices: 44915888--44915962 Score: 87
Period size: 19 Copynumber: 3.8 Consensus size: 19
44915878 AATCATATCT
44915888 TCCAAGATTGCATATCATA
1 TCCAAGATTGCATATCATA
*
44915907 TCCAATATTGCATATATCATA
1 TCCAAGATTGC--ATATCATA
* *
44915928 TCTAAGATTGCATGTCATA
1 TCCAAGATTGCATATCATA
* *
44915947 TCTAAAATTGCATATC
1 TCCAAGATTGCATATC
44915963 TTTGAAGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 31 0.65
21 17 0.35
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (19 bp):
TCCAAGATTGCATATCATA
Found at i:44915925 original size:21 final size:21
Alignment explanation
Indices: 44915899--44915961 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
44915889 CCAAGATTGC
* *
44915899 ATATCATATCCAATATTGCAT
1 ATATCATATCTAAAATTGCAT
*
44915920 ATATCATATCTAAGATTGC--
1 ATATCATATCTAAAATTGCAT
*
44915939 ATGTCATATCTAAAATTGCAT
1 ATATCATATCTAAAATTGCAT
44915960 AT
1 AT
44915962 CTTTGAAGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 17 0.47
21 19 0.53
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAAATTGCAT
Done.