Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60982465
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 868082 characters in sequence are not A, C, G, or T
File 150 of 204
Found at i:45197396 original size:175 final size:175
Alignment explanation
Indices: 45197173--45197755 Score: 959
Period size: 175 Copynumber: 3.3 Consensus size: 175
45197163 CATCAGTTGT
* * * *
45197173 AGTGAAGCTGATTAAAATAAATGATCTTATCTCTCTAAAGTTATAGTAGAGTAGATCGCACCAGG
1 AGTGGAGCGGATTAAAACAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCACCAGG
* *
45197238 TCTTATTTCCCTGAGATTACAGTGGAACAAATCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
66 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
*
45197303 CAGCGGAGCAGATTGAAGATAGTAATCCTATCTCTCTGAGATTAC
131 CAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
* * *
45197348 AGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTAAAGTTATAGTAGACTAGATCGCACCAGG
1 AGTGGAGCGGATTAAAACAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCACCAGG
45197413 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
66 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
*
45197478 CAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
131 CAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
* * * ** *
45197523 AGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAAG
1 AGTGGAGCGGATTAAAACAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCACCAGG
45197588 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
66 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
* *
45197653 CAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
131 CAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
* * * *
45197698 AGTGGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCG
1 AGTGGAGCGGATTAAAACAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCG
45197756 TGTCAAATCT
Statistics
Matches: 384, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
175 384 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (175 bp):
AGTGGAGCGGATTAAAACAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCACCAGG
TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
CAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
Found at i:45197698 original size:131 final size:129
Alignment explanation
Indices: 45197459--45197699 Score: 288
Period size: 131 Copynumber: 1.9 Consensus size: 129
45197449 GAATTTCAGA
* **
45197459 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGATAGTAATCCTATCTCCCTGAGATTACA
** * * * *
45197524 GTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAAG
66 GCAGAGCAGATTAAAACCAATAATCCTATCTCCCTGAAGTTACAGCAGAGTAGATCGCGTCAAG
* * *
45197588 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGA-ATTTCAGATCTTATCTCCCTGAGATT
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGATA-GT-A-ATCCTATCTCCCTGAGATT
* * * *
45197652 ACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTG-AGATTACAG
63 ACAGCAGAGCAGATTAAAACCAATAATCCTATCTCCCTGAAG-TTACAG
45197700 TGGAGCGGAT
Statistics
Matches: 92, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
128 1 0.01
129 35 0.38
130 3 0.03
131 53 0.58
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.28
Consensus pattern (129 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGATAGTAATCCTATCTCCCTGAGATTACA
GCAGAGCAGATTAAAACCAATAATCCTATCTCCCTGAAGTTACAGCAGAGTAGATCGCGTCAAG
Found at i:45197790 original size:85 final size:84
Alignment explanation
Indices: 45197173--45197795 Score: 344
Period size: 87 Copynumber: 7.2 Consensus size: 84
45197163 CATCAGTTGT
* * * * * * *
45197173 AGTGAAGCTGATTAAAATAAATGATCTTATCTCTCTAAAGTTATAGTAGAGTAGATCGCA-CCAG
1 AGTGGAGCAGATTAAAATAAA-GATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCG-AGTCAA
* * *
45197237 GTCTTATTTCCCTGAGATTAC
64 ATCCTATCTCCCTGAGATTAC
* * * ** * * * *
45197258 AGTGGAACAAATCGAAGAATTTCAGATCTTATCTCCCTG-AGATTACAGCGGAGCAGATTGAAGA
1 AGTGGAGCAGAT-TAA-AA-TAAAGATCTTATCTCTCTGAAG-TTACAGCAGAGTAGATCG-AG-
*
45197322 T-AGTAATCCTATCTCTCTGAGATTAC
60 TCA--AATCCTATCTCCCTGAGATTAC
* * * * * * * * *
45197348 AGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTAAAGTTATAGTAGACTAGATCGCA-CCAG
1 AGTGGAGCAGATTAAAA-TAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCG-AGTCAA
* * *
45197412 GTCTTATTTCCCTGAGATTAC
64 ATCCTATCTCCCTGAGATTAC
* ** ** * ** * *
45197433 AGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTG-AGATTACAGTGGAGCAGATTGAAGA
1 AGTGGAGCAGA-TTAA-AA-TAAAGATCTTATCTCTCTGAAG-TTACAGCAGAGTAGATCG-AG-
45197497 T-AGTAATCCTATCTCCCTGAGATTAC
60 TCA--AATCCTATCTCCCTGAGATTAC
* * * * *
45197523 AGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAAG
1 AGTGGAGCAGATTAAAA-TAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGAGTCAAA
* *
45197588 TCTTATTTCCCTGAGATTAC
65 TCCTATCTCCCTGAGATTAC
* ** ** * * *
45197608 AGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTG-AGATTACAGCAGAGCAGATTGAAG-
1 AGTGGAGCAGA-TTAA-AA-TAAAGATCTTATCTCTCTGAAG-TTACAGCAGAGTAGATCG-AGT
45197671 CTAGTAATCCTATCTCCCTGAGATTAC
61 C-A--AATCCTATCTCCCTGAGATTAC
* * * *
45197698 AGTGGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAAA
1 AGTGGAGCAGATTAAAATAAA-GATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGAGTCAAA
* *
45197763 TCTTATCTCCTTGAGATTAC
65 TCCTATCTCCCTGAGATTAC
*
45197783 AGCGGAGCAGATT
1 AGTGGAGCAGATT
45197796 GAAGTTAGTA
Statistics
Matches: 392, Mismatches: 117, Indels: 58
0.69 0.21 0.10
Matches are distributed among these distances:
85 93 0.24
86 13 0.03
87 98 0.25
88 95 0.24
89 12 0.03
90 81 0.21
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (84 bp):
AGTGGAGCAGATTAAAATAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGAGTCAAAT
CCTATCTCCCTGAGATTAC
Found at i:45197793 original size:129 final size:129
Alignment explanation
Indices: 45197633--45197910 Score: 448
Period size: 129 Copynumber: 2.2 Consensus size: 129
45197623 AGAATTTCAG
45197633 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* *
45197698 AGTGGAGCGGATTAAAATAAAGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAA
66 AGTGGAGCGGATTAAAATAAAGGATCCTATCTCCCTGAAGTTACAGCAGAGTAGATCGTGTCAA
* * *
45197762 ATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* * * * *
45197827 AGTGGAGTGGATTAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAGAGTAGATCGCGTTAG
66 AGTGGAGCGGATTAAAATAAAGGATCCTATCTCCCTGAAGTTACAGCAGAGTAGATCGTGTCAA
* *
45197891 GTCTTATTTCCCTGAGATTA
1 ATCTTATCTCCCTGAGATTA
45197911 TAGTGGAACA
Statistics
Matches: 136, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
129 136 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (129 bp):
ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
AGTGGAGCGGATTAAAATAAAGGATCCTATCTCCCTGAAGTTACAGCAGAGTAGATCGTGTCAA
Found at i:45197841 original size:304 final size:304
Alignment explanation
Indices: 45197458--45198189 Score: 1275
Period size: 304 Copynumber: 2.4 Consensus size: 304
45197448 AGAATTTCAG
*
45197458 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
* * *
45197523 AGTGGAGCGGATTAAAACCAATGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAAG
66 AGTGGAGCGGATTAAAACAAAGGATCTTATCTCACTGAAGTTACAGCAGAGTAGATCGCGTCAAG
45197588 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
131 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
*
45197653 CAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAA
196 CAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAATAA
45197718 AGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAA
261 AGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAA
* *
45197762 ATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
* * * * *
45197827 AGTGGAGTGGATTAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAGAGTAGATCGCGTTAGG
66 AGTGGAGCGGATTAAAACAAAGGATCTTATCTCACTGAAGTTACAGCAGAGTAGATCGCGTCAAG
*
45197892 TCTTATTTCCCTGAGATTATAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
131 TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
*
45197957 CAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAATAA
196 CAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAATAA
* * * *
45198022 ATGATCTTATCTCTCTGAAGTTAGAGTAGAGTAGATCGTGTCAG
261 AGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAA
* *
45198066 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
*
45198131 AGTGGAGCGGATTAAAACAAAGGATCTTATCTCACTGAAGTTACAGTAGAGTAGATCGC
66 AGTGGAGCGGATTAAAACAAAGGATCTTATCTCACTGAAGTTACAGCAGAGTAGATCGC
45198190 ATCAGGTTTT
Statistics
Matches: 404, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
304 404 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (304 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
AGTGGAGCGGATTAAAACAAAGGATCTTATCTCACTGAAGTTACAGCAGAGTAGATCGCGTCAAG
TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTA
CAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAATAA
AGGATCCTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAA
Found at i:45197956 original size:175 final size:175
Alignment explanation
Indices: 45197762--45198085 Score: 540
Period size: 175 Copynumber: 1.9 Consensus size: 175
45197752 ATCGTGTCAA
* * *
45197762 ATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAATTAC
* * *
45197827 AGTGGAGTGGATTAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAGAGTAGATCGCGTTAGG
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAGAGTAGATCGCGTCAGA
*
45197892 TCTTATTTCCCTGAGATTATAGTGGAACAGACCGAAGAATTTCAG
131 TCTTATCTCCCTGAGATTATAGTGGAACAGACCGAAGAATTTCAG
45197937 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAATTAC
* * * * *
45198002 AGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTAGAGTAGAGTAGATCGTGTCAGA
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAGAGTAGATCGCGTCAGA
45198067 TCTTATCTCCCTGAGATTA
131 TCTTATCTCCCTGAGATTA
45198086 CAGCGGAGCA
Statistics
Matches: 137, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
175 137 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAATTAC
AGTGGAGCGGATTAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAGAGTAGATCGCGTCAGA
TCTTATCTCCCTGAGATTATAGTGGAACAGACCGAAGAATTTCAG
Found at i:45198090 original size:129 final size:129
Alignment explanation
Indices: 45197933--45198253 Score: 464
Period size: 129 Copynumber: 2.5 Consensus size: 129
45197923 CCGAAGAATT
*
45197933 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAA
* * * * **
45197998 TTACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTAGAGTAGAGTAGATCGTG
66 TTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCACTGAAGTTACAGTAGAGTAGATCGCA
*
45198062 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAA
45198127 TTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCACTGAAGTTACAGTAGAGTAGATCGCA
66 TTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCACTGAAGTTACAGTAGAGTAGATCGCA
* * * * * * * * * *
45198191 TCAGGTTTTACCTCCCT-ATGGTTACAGTGGAGTACATTTAAGCCAGTAATTCTATCTCCCTGA
1 TCAGATCTTATCTCCCTGA-GATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGA
45198254 CGTTGCGGAG
Statistics
Matches: 173, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
128 1 0.01
129 172 0.99
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (129 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAA
TTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCACTGAAGTTACAGTAGAGTAGATCGCA
Found at i:45200400 original size:21 final size:21
Alignment explanation
Indices: 45200374--45200415 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
45200364 AAAGGGTCTG
45200374 TTAAAATGAATTTTTTCAGAA
1 TTAAAATGAATTTTTTCAGAA
45200395 TTAAAATGAATTTTTTCAGAA
1 TTAAAATGAATTTTTTCAGAA
45200416 AAGTGGGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43
Consensus pattern (21 bp):
TTAAAATGAATTTTTTCAGAA
Found at i:45200456 original size:32 final size:32
Alignment explanation
Indices: 45200414--45200475 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
45200404 ATTTTTTCAG
* *
45200414 AAAAGTGGGTATTTACGCGCGTAGTCCCTCTT
1 AAAAGGGGGTATTTACGCGCGCAGTCCCTCTT
45200446 AAAAGGGGGTATTTACGCGCGCAGTCCCTC
1 AAAAGGGGGTATTTACGCGCGCAGTCCCTC
45200476 CTATTTTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (32 bp):
AAAAGGGGGTATTTACGCGCGCAGTCCCTCTT
Found at i:45200767 original size:3 final size:3
Alignment explanation
Indices: 45200759--45200832 Score: 80
Period size: 3 Copynumber: 24.3 Consensus size: 3
45200749 GTATTATCAT
45200759 TTA TTA TTA TTA TTA TTA TTA TTA TT- TCTA TTA TTA TTA TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-TA
* * *
45200805 -TA TTA CTG TTA CTTA TCA TTA TTA TTA T
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA T
45200833 GTGATAGCTT
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
2 3 0.05
3 51 0.85
4 6 0.10
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:45200897 original size:16 final size:17
Alignment explanation
Indices: 45200870--45200905 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
45200860 TTTTCTAACC
45200870 TATTTAATATATATAAA
1 TATTTAATATATATAAA
45200887 TATTT-ATATATATAAA
1 TATTTAATATATATAAA
45200903 TAT
1 TAT
45200906 CTATGTGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTTAATATATATAAA
Found at i:45206879 original size:286 final size:286
Alignment explanation
Indices: 45206361--45206933 Score: 995
Period size: 286 Copynumber: 2.0 Consensus size: 286
45206351 TTAGTTGAAT
* * *
45206361 TCCAAAGCTATGCACACCTTATTTTGTGCACTTGGCTTGGAAGGATATATTAAAGTATCATTTTG
1 TCCAAAGCTATGCACACCTTATTTTGTGCACTTGGCTTGAAAGAATATATTAAAGTATCATCTTG
* * * *
45206426 TTCCAATGCCAATGAGATATGGGATTAGCTTGAAGTCACACATGAACGTATTAGCCAATTAAAGA
66 TTCCAATGCCAATGAGATATGGGATAAGCTTGAAGTCACACATGAACATATCAGCCAATTAAAAA
*
45206491 AGTCTAAAGTTGGAATTCTTACTCTAAATTATGAAACCTTCAAGATGAAGCTCGAAGAAGATATC
131 AGTCTAAAGTTGGAATTCTTACTCTAAATTATGAAACCTTCAAAATGAAGCTCGAAGAAGATATC
*
45206556 AAGACGATGTTCGATCGGTTTACTATCATCATCAATGGATTAAAGTCTTAT-GAGAAGACATATC
196 AAGACGATGTTCGATCAGTTTACTATCATCATCAATGGATTAAAGTCTTATAG-GAAGACATATC
*
45206620 CAAATGAAAAGGTGGTAAGGAAGATGC
260 CAAATGAAAAAGTGGTAAGGAAGATGC
* *
45206647 TCCAAGGCTATGCACACCTTATTTTGTGCACTTGGCTTGAAAGAATATATTAGAGTATCATCTTG
1 TCCAAAGCTATGCACACCTTATTTTGTGCACTTGGCTTGAAAGAATATATTAAAGTATCATCTTG
*
45206712 TTCCAATGCCAATGAGATATGTGATAAGCTTGAAGTCACACATGAACATATCAGCCAATTAAAAA
66 TTCCAATGCCAATGAGATATGGGATAAGCTTGAAGTCACACATGAACATATCAGCCAATTAAAAA
* *
45206777 AGTCTAAAGTTGGAATTCTTACTCTAAATTATGAAACCTTCAAAATGAAGCTCGAGGGAGATATC
131 AGTCTAAAGTTGGAATTCTTACTCTAAATTATGAAACCTTCAAAATGAAGCTCGAAGAAGATATC
45206842 AAGACGATGTTCGATCAGTTTACTATCATCATCAATGGATTAAAGTCTTATAGGAAGACATATCC
196 AAGACGATGTTCGATCAGTTTACTATCATCATCAATGGATTAAAGTCTTATAGGAAGACATATCC
45206907 AAATGAAAAAGTGGTAAGGAAGATGC
261 AAATGAAAAAGTGGTAAGGAAGATGC
45206933 T
1 T
45206934 TCGCAGCTTG
Statistics
Matches: 271, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
286 270 1.00
287 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (286 bp):
TCCAAAGCTATGCACACCTTATTTTGTGCACTTGGCTTGAAAGAATATATTAAAGTATCATCTTG
TTCCAATGCCAATGAGATATGGGATAAGCTTGAAGTCACACATGAACATATCAGCCAATTAAAAA
AGTCTAAAGTTGGAATTCTTACTCTAAATTATGAAACCTTCAAAATGAAGCTCGAAGAAGATATC
AAGACGATGTTCGATCAGTTTACTATCATCATCAATGGATTAAAGTCTTATAGGAAGACATATCC
AAATGAAAAAGTGGTAAGGAAGATGC
Found at i:45215928 original size:18 final size:18
Alignment explanation
Indices: 45215883--45215955 Score: 58
Period size: 18 Copynumber: 4.1 Consensus size: 18
45215873 CAAATAGAAT
45215883 AGATGCAGATACA-ATAAC
1 AGATGCAGATACAGAT-AC
* ** *
45215901 TGATATAGATTCAGATAC
1 AGATGCAGATACAGATAC
*
45215919 AGATGCAGATGCAGATAC
1 AGATGCAGATACAGATAC
* * *
45215937 GGATTCAGACACAGATAC
1 AGATGCAGATACAGATAC
45215955 A
1 A
45215956 AATATAGTGT
Statistics
Matches: 41, Mismatches: 13, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
18 39 0.95
19 2 0.05
ACGTcount: A:0.42, C:0.16, G:0.21, T:0.21
Consensus pattern (18 bp):
AGATGCAGATACAGATAC
Found at i:45223621 original size:47 final size:43
Alignment explanation
Indices: 45223540--45223641 Score: 123
Period size: 47 Copynumber: 2.3 Consensus size: 43
45223530 AAAACAATTT
** *
45223540 AAAATAAATAATAATTTAAAATAAATGATTTATAGGAACAACTC
1 AAAATAAATAATAATTTAAAATAAACAATATATAGGAA-AACTC
* *
45223584 AAAATAAATAATAAAAGTTTCAAATAAACAATATATAGGAAAACTT
1 AAAATAAATAAT--AA-TTTAAAATAAACAATATATAGGAAAACTC
45223630 AAAATAAATAAT
1 AAAATAAATAAT
45223642 GATAAAACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
44 12 0.24
46 18 0.36
47 20 0.40
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (43 bp):
AAAATAAATAATAATTTAAAATAAACAATATATAGGAAAACTC
Found at i:45223742 original size:15 final size:15
Alignment explanation
Indices: 45223722--45223754 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
45223712 AAAGATATAT
45223722 ATATAATAGTTTACA
1 ATATAATAGTTTACA
45223737 ATATAATAGTTTACA
1 ATATAATAGTTTACA
45223752 ATA
1 ATA
45223755 AATGATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
ATATAATAGTTTACA
Found at i:45223831 original size:20 final size:20
Alignment explanation
Indices: 45223806--45223845 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
45223796 AACGGTTTAA
45223806 AATTAATGATGATAAAAGAG
1 AATTAATGATGATAAAAGAG
45223826 AATTAATGATGATAAAAGAG
1 AATTAATGATGATAAAAGAG
45223846 CTTTCTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (20 bp):
AATTAATGATGATAAAAGAG
Found at i:45230923 original size:15 final size:15
Alignment explanation
Indices: 45230903--45230934 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
45230893 GTAGTATATG
45230903 ATGATTAAGAAAATT
1 ATGATTAAGAAAATT
45230918 ATGATTAAGAAAATT
1 ATGATTAAGAAAATT
45230933 AT
1 AT
45230935 CTTTCAACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.34
Consensus pattern (15 bp):
ATGATTAAGAAAATT
Found at i:45235167 original size:171 final size:170
Alignment explanation
Indices: 45234879--45235325 Score: 707
Period size: 171 Copynumber: 2.6 Consensus size: 170
45234869 CGGTATGGAG
* * * *
45234879 TACAATTTATTTTTAATTTGAAGTTTGGATTTCGGACCTTCGTTTAGGGAAATAAATGAATTACT
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCACT
* *
45234944 GGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTATTCCAATACTTGTTGTAACCTC
66 -GAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTATTCCAATACTTATTGTAACCTC
* * *
45235009 TAGTAATATTATTTTCGTCATATGATATGGCGTCTTGCAAT
130 TAGTAATATTATTTTCATCATAAGATATGGAGTCTTGCAAT
*
45235050 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTTGGGAAATGAATGAATCACT
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCACT
* *
45235115 AGAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTTCAATACTTATTGTAACCTC
66 -GAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTATTCCAATACTTATTGTAACCTC
*
45235180 TCGTAATATTATTTTCATCATAAGATATGGAGTCTTGCAAT
130 TAGTAATATTATTTTCATCATAAGATATGGAGTCTTGCAAT
* *
45235221 TACAATTTATTTTTAGTTCT-AAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCAC
1 TACAATTTATTTTTAGTT-TGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCAC
*
45235285 TGCAACGTTTTCAAATATTTATAGTGTTCCAATAACGATAA
65 TG-AACGTTTTCAAATATTTATAGTGTTCCAATAACTATAA
45235326 ATGAATGGGT
Statistics
Matches: 256, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
170 1 0.00
171 254 0.99
172 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (170 bp):
TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTTGTTTAGGGAAATGAATGAATCACT
GAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTATTCCAATACTTATTGTAACCTCT
AGTAATATTATTTTCATCATAAGATATGGAGTCTTGCAAT
Found at i:45237725 original size:14 final size:14
Alignment explanation
Indices: 45237689--45237728 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
45237679 ATGAATATTG
45237689 ATAT-GATAGG-AA
1 ATATCGATAGGAAA
45237701 A-ATCG-TAGGAAA
1 ATATCGATAGGAAA
45237713 ATATCGATAGGAAA
1 ATATCGATAGGAAA
45237727 AT
1 AT
45237729 TTTACCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 6 0.25
12 5 0.21
13 4 0.17
14 9 0.38
ACGTcount: A:0.50, C:0.05, G:0.23, T:0.23
Consensus pattern (14 bp):
ATATCGATAGGAAA
Found at i:45244647 original size:44 final size:44
Alignment explanation
Indices: 45244349--45245007 Score: 308
Period size: 44 Copynumber: 14.8 Consensus size: 44
45244339 TTATGGCAAA
* * * *
45244349 TCTTATCTCCCTAAAGTTGCAGCGAAGCAGATT-AAGTCACTAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC-AAG
* ** * * *
45244392 TCTTA-CCCCCTGAAGTTATAGTGGGGTAGATTGCAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * *
45244435 T-TTGATCTCCCTGAAGATGAAGTGGAGCAGACTGAAGATAGCAAG
1 TCTT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAG
* * * *
45244480 TCTCATTTCCCTGAAGTTGCAGTGGAACAGATTAAGGCTAAATTAC-AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--AAGTTACAAG
* * * * * * *
45244528 ACCTTATCTCCCTAAATTTGTAGTGGAGCAGGTTAAAGTCACCAA-
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAG
* * *
45244573 TCTTAT-TCCCCTGAAGTTTCACTAGG-GTAGATTGAAGTTACAAG
1 TCTTATCT-CCCTGAAGTTGCAGT-GGAGCAGATTGAAGTTACAAG
* * * * *
45244617 TCTTATCTCCCTGAATTTGCAGTGGAGTAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAG
* * * *
45244662 TCTTATGTCCCTGAAGTTGCAGTGGAACAAATTGAAGCTATAAATTACAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-T--A-CA-AG
* ** ** * * *
45244712 ATCTTATATCTTTGAAGTTTTATTAGAGC-G-TAT-CA--TATCAA-
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TGAAGTTA-CAAG
* * *
45244753 ACATTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTACAAG
1 TC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * * * *
45244798 TCTTATCTCCCTGAAGTTGTAGTGGAGTAAACTGAAGATACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * * *
45244842 TCTTATCCCCCTAAATTTGCAATAGG-GCAGATTGAAGCTACAAG
1 TCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGTTACAAG
* * **
45244886 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATATCTAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-C-AAG
* * * * * * *
45244931 CCTTATCTCTCTGAAGTTACAGTGGAGCAGGTTAAAGCTCCTAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC-AAG
* *
45244975 TCCTATCTCCCTGAAGTTGCACTGGAGCAGATT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
45245008 AAAACGATGA
Statistics
Matches: 458, Mismatches: 120, Indels: 75
0.70 0.18 0.11
Matches are distributed among these distances:
40 1 0.00
41 20 0.04
42 26 0.06
43 25 0.05
44 216 0.47
45 106 0.23
46 4 0.01
47 1 0.00
48 3 0.01
49 30 0.07
50 6 0.01
51 20 0.04
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
Found at i:45244824 original size:181 final size:178
Alignment explanation
Indices: 45244374--45244847 Score: 493
Period size: 182 Copynumber: 2.6 Consensus size: 178
45244364 GTTGCAGCGA
* *
45244374 AGCAGATT-AAGTCACTAATCTTA-CCCCCTGAAGTTATAGTGGGGTAGATTGCAGTTACAAGT-
1 AGCAG-TTAAAGTCAC-AATCTTATTCCCCTGAAGTT-TAGT-GGGTAGATTGAAGTTACAAGTC
* * * * *
45244436 TTGATCTCCCTGAAGATGAAGTGGAGCAGACTGAAGATAGCAAGTCTCATTTCCCTGAAGTTGCA
62 TT-ATCTCCCTGAAGTTGAAGTGGAGTAGACTGAAGATAGCAAATCTTATGTCCCTGAAGTTGCA
* * *
45244501 GTGGAACAGATTAAGGCTAAATTACAGACCTTATCTCCCTAAATTTGTAGTGG
126 GTGGAACAAATTAAGGCTAAATTACAGACCTTATATCCCTAAATTTGTAGTAG
*
45244554 AGCAGGTTAAAGTCACCAATCTTATTCCCCTGAAGTTTCACTAGGGTAGATTGAAGTTACAAGTC
1 AGCA-GTTAAAGTCA-CAATCTTATTCCCCTGAAGTTT-AGT-GGGTAGATTGAAGTTACAAGTC
* *
45244619 TTATCTCCCTGAATTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTATGTCCCTGAAGTTGCAG
62 TTATCTCCCTGAAGTTGAAGTGGAGTAGACTGAAGATAGCAAATCTTATGTCCCTGAAGTTGCAG
* ** * *
45244684 TGGAACAAATTGAA-GCTATAAATTACAGATCTTATATCTTTGAAGTTT-TATTAG
127 TGGAACAAATT-AAGGC--TAAATTACAGACCTTATATCCCT-AAATTTGTAGTAG
* * *
45244738 AGC-GTATCATA-TCA-AA-CATTA-TCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTACAAG
1 AGCAGT-T-AAAGTCACAATC-TTATTC-CCCTGAAGTT-TAGTGG-GTAGATTGAAGTTACAAG
* *
45244798 TCTTATCTCCCTGAAGTTGTAGTGGAGTAAACTGAAGATA-CAAATCTTAT
60 TCTTATCTCCCTGAAGTTGAAGTGGAGTAGACTGAAGATAGCAAATCTTAT
45244848 CCCCCTAAAT
Statistics
Matches: 252, Mismatches: 26, Indels: 32
0.81 0.08 0.10
Matches are distributed among these distances:
180 21 0.08
181 85 0.34
182 105 0.42
183 8 0.03
184 28 0.11
185 5 0.02
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (178 bp):
AGCAGTTAAAGTCACAATCTTATTCCCCTGAAGTTTAGTGGGTAGATTGAAGTTACAAGTCTTAT
CTCCCTGAAGTTGAAGTGGAGTAGACTGAAGATAGCAAATCTTATGTCCCTGAAGTTGCAGTGGA
ACAAATTAAGGCTAAATTACAGACCTTATATCCCTAAATTTGTAGTAG
Found at i:45244986 original size:89 final size:92
Alignment explanation
Indices: 45244864--45245099 Score: 240
Period size: 89 Copynumber: 2.6 Consensus size: 92
45244854 AAATTTGCAA
* * *
45244864 TAGGGCAGATTGAAGCTA-C---AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAAT
1 TAGGGCAGATTAAAGCTACCATAAAGTCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAAG
* *
45244925 ATCTAACCTTAT-CTCTCTGAAGTTACAG
66 AT-GAACCATATAC-CTCTGAAGTTACAG
* * * *
45244953 T-GGAGCAGGTTAAAGCT-CC-T-AA-TCCTATCTCCCTGAAGTTGCACTGGAGCAGATTAAAAC
1 TAGG-GCAGATTAAAGCTACCATAAAGTCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAA
*
45245013 GATGAATCATATACCTCTGAAGTTACAG
65 GATGAACCATATACCTCTGAAGTTACAG
* * *
45245041 TAGGTCAGATTAAATCTACCATAGCAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
1 TAGGGCAGATTAAAGCTACCATA--AAGTCCTATCTCCCTAAAGTTGCAGTGGAGCAGA
45245100 CTGAATATAG
Statistics
Matches: 120, Mismatches: 16, Indels: 17
0.78 0.10 0.11
Matches are distributed among these distances:
88 33 0.28
89 54 0.45
90 3 0.03
93 2 0.02
94 28 0.23
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (92 bp):
TAGGGCAGATTAAAGCTACCATAAAGTCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAAG
ATGAACCATATACCTCTGAAGTTACAG
Found at i:45245010 original size:44 final size:43
Alignment explanation
Indices: 45244756--45245135 Score: 219
Period size: 44 Copynumber: 8.4 Consensus size: 43
45244746 ATATCAAACA
* * * *
45244756 TTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACAA-TC
* * * * *
45244800 TTATCTCCCTGAAGTTGTAGTGGAGTAAACTGAAGATACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAC-AATC
* * * * * *
45244844 TTATCCCCCTAAATTTGCAATAGG-GCAGATTGAAGCTACAAGTC
1 TTATCTCCCTGAAGTTGCAGT-GGAGCAGATTAAAGATACAA-TC
* * *
45244888 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAAATATCTAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA-C-AATC
* * * * *
45244933 TTATCTCTCTGAAGTTACAGTGGAGCAGGTTAAAGCTCCTAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAC-AATC
* * *
45244977 CTATCTCCCTGAAGTTGCACTGGAGCAGATTAAAACGAT-GAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAA-GATACAATC
* * * * *
45245021 ATATAC-CTCTGAAGTTACAGTAGG-TCAGATTAAATCTACCATAGCAAGTC
1 TTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATT-AA---A-GATA-CAA-TC
* * * *
45245071 TTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAATATAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA-C-AATC
*
45245116 TTGTCTCCCTGAAGATTGCA
1 TTATCTCCCTGAAG-TTGCA
45245136 TTGAAACAGA
Statistics
Matches: 263, Mismatches: 53, Indels: 38
0.74 0.15 0.11
Matches are distributed among these distances:
43 4 0.02
44 153 0.58
45 62 0.24
46 12 0.05
47 4 0.02
49 6 0.02
50 22 0.08
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACAATC
Found at i:45248798 original size:171 final size:171
Alignment explanation
Indices: 45248550--45248866 Score: 528
Period size: 171 Copynumber: 1.9 Consensus size: 171
45248540 CGGTATGGAG
* * * *
45248550 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCGGACCTTCGTTTAGGGAAATAAATAAATTACT
1 TACAATTTATTTTTAGTTTGAAGTTTAGATTTCAGACCTTCGTTTAGGGAAATAAAGAAATCACT
*
45248615 GGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
66 AGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
*
45248680 TTGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
131 TTGTAATATGATTTTCATCATACGATATGGAGTCTTGCAAT
* * *
45248721 TACAATTTATTTTTAGTTCT-AAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAAGGAATCAC
1 TACAATTTATTTTTAGTT-TGAAGTTTAGATTTCAGACCTTCGTTTAGGGAAATAAAGAAATCAC
*
45248785 TAGAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCT
65 TAGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCT
45248850 CTTGTAATATGATTTTC
130 CTTGTAATATGATTTTC
45248867 TAAAAAAGAA
Statistics
Matches: 135, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
171 134 0.99
172 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.42
Consensus pattern (171 bp):
TACAATTTATTTTTAGTTTGAAGTTTAGATTTCAGACCTTCGTTTAGGGAAATAAAGAAATCACT
AGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
TTGTAATATGATTTTCATCATACGATATGGAGTCTTGCAAT
Found at i:45250161 original size:2 final size:2
Alignment explanation
Indices: 45250156--45250195 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
45250146 AGTTATTTCT
45250156 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45250196 ACCACTTTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45251298 original size:14 final size:14
Alignment explanation
Indices: 45251262--45251301 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
45251252 ATGAATATTG
45251262 ATAT-GATAGG-AA
1 ATATCGATAGGAAA
45251274 A-ATCG-TAGGAAA
1 ATATCGATAGGAAA
45251286 ATATCGATAGGAAA
1 ATATCGATAGGAAA
45251300 AT
1 AT
45251302 TTTACCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 6 0.25
12 5 0.21
13 4 0.17
14 9 0.38
ACGTcount: A:0.50, C:0.05, G:0.23, T:0.23
Consensus pattern (14 bp):
ATATCGATAGGAAA
Found at i:45255091 original size:356 final size:356
Alignment explanation
Indices: 45254432--45255143 Score: 1354
Period size: 356 Copynumber: 2.0 Consensus size: 356
45254422 CCCTAAAGGT
*
45254432 ACAACATTGAAATACAAGCCACTTAACAACACCTATTGACACCTTGAGCTATAGACGATTTCTTG
1 ACAACATTGAAATACAAGCCACTTAACAACACCTATTGACACCCTGAGCTATAGACGATTTCTTG
*
45254497 CAACTCGCTTAAAATTTTGTTTCTCAATAAACCTCTCAATATTTTGCAAGGAGTTATAAAGATCA
66 CAACTCGCTCAAAATTTTGTTTCTCAATAAACCTCTCAATATTTTGCAAGGAGTTATAAAGATCA
45254562 AGATAATTTTTCATAGCATTCTTATGTAAAGAATTTGCATCCTTACCCACATGAGTAACAAAAGG
131 AGATAATTTTTCATAGCATTCTTATGTAAAGAATTTGCATCCTTACCCACATGAGTAACAAAAGG
45254627 ACATTTAGATCCTTCATTGACCTTCTTTCATGATCGAAATCCTTGGCTTGTAAAAGTATTTCAAT
196 ACATTTAGATCCTTCATTGACCTTCTTTCATGATCGAAATCCTTGGCTTGTAAAAGTATTTCAAT
45254692 GATCCCAAATGGCTTGTTGAAGAGAAAACAAAGAACGAAATACCAAAATAACATTCTAGAAATTC
261 GATCCCAAATGGCTTGTTGAAGAGAAAACAAAGAACGAAATACCAAAATAACATTCTAGAAATTC
45254757 AAATTTTGATGAAGGTATCAATACCTTAGGC
326 AAATTTTGATGAAGGTATCAATACCTTAGGC
*
45254788 ACAACCTTGAAATACAAGCCACTTAACAACACCTATTGACACCCTGAGCTATAG-CTGATTTCTT
1 ACAACATTGAAATACAAGCCACTTAACAACACCTATTGACACCCTGAGCTATAGAC-GATTTCTT
* *
45254852 GCAACTCGCTCAGAATTTTGTTTCTCAATAATCCTCTCAATATTTTGCAAGGAGTTATAAAGATC
65 GCAACTCGCTCAAAATTTTGTTTCTCAATAAACCTCTCAATATTTTGCAAGGAGTTATAAAGATC
45254917 AAGATAATTTTTCATAGCATTCTTATGTAAAGAATTTGCATCCTTACCCACATGAGTAACAAAAG
130 AAGATAATTTTTCATAGCATTCTTATGTAAAGAATTTGCATCCTTACCCACATGAGTAACAAAAG
45254982 GACATTTAGATCCTTCATTGACCTTCTTTCATGATCGAAATCCTTGGCTTGTAAAAGTATTTCAA
195 GACATTTAGATCCTTCATTGACCTTCTTTCATGATCGAAATCCTTGGCTTGTAAAAGTATTTCAA
*
45255047 TGATCCCAAATGGCTTGTTGAAGAGAAAACAAAGAACGAAATACCAAAATAACATTCTAGTAATT
260 TGATCCCAAATGGCTTGTTGAAGAGAAAACAAAGAACGAAATACCAAAATAACATTCTAGAAATT
45255112 CAAATTTTGATGAAGGTATCAATACCTTAGGC
325 CAAATTTTGATGAAGGTATCAATACCTTAGGC
45255144 CTAGGTATCG
Statistics
Matches: 349, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
355 1 0.00
356 348 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (356 bp):
ACAACATTGAAATACAAGCCACTTAACAACACCTATTGACACCCTGAGCTATAGACGATTTCTTG
CAACTCGCTCAAAATTTTGTTTCTCAATAAACCTCTCAATATTTTGCAAGGAGTTATAAAGATCA
AGATAATTTTTCATAGCATTCTTATGTAAAGAATTTGCATCCTTACCCACATGAGTAACAAAAGG
ACATTTAGATCCTTCATTGACCTTCTTTCATGATCGAAATCCTTGGCTTGTAAAAGTATTTCAAT
GATCCCAAATGGCTTGTTGAAGAGAAAACAAAGAACGAAATACCAAAATAACATTCTAGAAATTC
AAATTTTGATGAAGGTATCAATACCTTAGGC
Found at i:45260402 original size:44 final size:45
Alignment explanation
Indices: 45260382--45260641 Score: 131
Period size: 45 Copynumber: 5.7 Consensus size: 45
45260372 TACAAGTTTG
45260382 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGCAAGTCTC
1 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGCAAGTCTC
* * * * * ** * *
45260427 ATTTCCCTGAAGTTGCAGTGGAACAGA-TTAAGGCTAAATTATAGACCTT
1 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAA-G--ATAGCA-AG-TCTC
* * ** * * *
45260476 ATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAG-TCACCAA-TCTTA
1 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGAT-AGCAAGTC-TC
* * * * *
45260521 ATC-CCCTGAAGTTTCAGTAGG-GCAGATTGAAGTTA-CAAGTCTT
1 ATCTCCCTGAAGATGCAGT-GGAGCAGACTGAAGATAGCAAGTCTC
* *
45260564 ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAG-CGT-
1 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGC-AAGTC-TC
* * * *
45260609 ATGTCCCTGAAGTTGCAGTGGAACAGATTGAAG
1 ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAG
45260642 CTATAAATTA
Statistics
Matches: 167, Mismatches: 32, Indels: 32
0.72 0.14 0.14
Matches are distributed among these distances:
43 9 0.05
44 54 0.32
45 63 0.38
46 5 0.03
47 5 0.03
48 2 0.01
49 26 0.16
50 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (45 bp):
ATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGCAAGTCTC
Found at i:45260584 original size:88 final size:87
Alignment explanation
Indices: 45260291--45260937 Score: 377
Period size: 88 Copynumber: 7.2 Consensus size: 87
45260281 TTATGGCAAA
* * * * * * *
45260291 TCTTATCTCCCTAAAGTTACAGCGAAGCAGATTAAAG-TCACTAATCTTACCCCCTGAAGTTAT-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAT-ACAAATCTTATCCCCTGAAGTT-TC
* * *
45260354 AGTGGGGTAGATTGCAGTTACAAG
64 AGTGGAGCAGATTGAAGTTACAAG
* * * * * *
45260378 T-TTGATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGCAAGTCTCATTTCCCTGAAGTTG
1 TCTT-ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATA-CAAATCTTA-TCCCCTGAAGTTT
* * *
45260442 CAGTGGAACAGATTAAGGCTAAATTA-TAG
63 CAGTGGAGCAGATT---G--AAGTTACAAG
* * ** *
45260471 ACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAG-TCACCAATCTTAATCCCCTGAAGTTT
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAT-ACAAATCTT-ATCCCCTGAAGTTT
45260535 CAGTAGG-GCAGATTGAAGTTACAAG
63 CAGT-GGAGCAGATTGAAGTTACAAG
* * * * * *
45260560 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAGCGTATGTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATA-CAAATCTTAT-CCCCTGAAGTTTC
* *
45260625 AGTGGAACAGATTGAAGCTATAAATTACAG
64 AGTGGAGCAGATTGAAG-T-T--A-CA-AG
* ** ** * * *
45260655 ATCTTATATCATTGAAGTTTTAGTAGAGCAGA-T--ATAT-CAAA-CATTATCTCCCTGAAGTTA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATACAAATC-TTATC-CCCTGAAGTTT
* *
45260715 CAGTGGAGTAGGTTGAAGTTACAAG
63 CAGTGGAGCAGATTGAAGTTACAAG
* * *
45260740 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATACAAATCTTATCCCCCT-AAATTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATACAAATCTTAT-CCCCTGAAGTTT-C
* * * * *
45260804 AATGGGGTAGATTAAAGCTACAAG
64 AGTGGAGCAGATTGAAGTTACAAG
* * * *
45260828 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATATCTAACCTTATCTCCCTGAAGTTAT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATA-CAAATCTTATC-CCCTGAAGTT-T
* * *
45260893 -AGTGGAGCAGGTTAAAGCTACTAA-
63 CAGTGGAGCAGATTGAAGTTAC-AAG
* * *
45260917 TCCTATCTCACTGAAATTGCA
1 TCTTATCTCCCTGAAGTTGCA
45260938 CCAGAGCGGA
Statistics
Matches: 431, Mismatches: 88, Indels: 80
0.72 0.15 0.13
Matches are distributed among these distances:
84 24 0.06
85 3 0.01
86 3 0.01
87 36 0.08
88 119 0.28
89 102 0.24
90 10 0.02
91 34 0.08
92 1 0.00
93 33 0.08
94 37 0.09
95 5 0.01
96 24 0.06
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (87 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATACAAATCTTATCCCCTGAAGTTTCAG
TGGAGCAGATTGAAGTTACAAG
Found at i:45260598 original size:182 final size:180
Alignment explanation
Indices: 45260292--45260783 Score: 574
Period size: 182 Copynumber: 2.7 Consensus size: 180
45260282 TATGGCAAAT
* * * * * *
45260292 CTTATCTCCCTAAAGTTACAGCGAAGCAGATTAAAGTCACTAATCTTACCCCCTGAAGTTAT-AG
1 CTTATCTCCCTGAAGTTATAGTGGAGCAGGTTAAAGTCAC-AATCTTATCCCCTGAAGTT-TCAG
* * *
45260356 TGGGGTAGATTGCAGTTACAAGT-TTGATCTCCCTGAAGATGCAGTGGAGCAGACTGAAGATAGC
64 T-GGGTAGATTGAAGTTACAAGTCTT-ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGC
* *
45260420 -AAGTC-TCATTTCCCTGAAGTTGCAGTGGAACAGATT-AAGGC-TAAATTATAGAC
127 AAAG-CGT-ATGTCCCTGAAGTTGCAGTGGAACAGATTGAA-GCATAAATTACAGAC
*
45260473 CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGTCACCAATCTTAATCCCCTGAAGTTTCAG
1 CTTATCTCCCTGAAGTTATAGTGGAGCAGGTTAAAGTCA-CAATCTT-ATCCCCTGAAGTTTCAG
*
45260538 TAGGGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
64 T-GGGTAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
*
45260603 AAGCGTATGTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGAT
128 AAGCGTATGTCCCTGAAGTTGCAGTGGAACAGATTGAAGC-ATAAATTACAGAC
* ** * * * * *
45260657 CTTATATCATTGAAGTTTTAGTAGAGCA-GATATA-TCA-AA-CATTATCTCCCTGAAGTTACAG
1 CTTATCTCCCTGAAGTTATAGTGGAGCAGGTTAAAGTCACAATC-TTATC-CCCTGAAGTTTCAG
*
45260718 TGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATA-CA
64 TGG-GTAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
45260782 AA
128 AA
45260784 TCTTATCCCC
Statistics
Matches: 274, Mismatches: 25, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
179 10 0.04
180 74 0.27
181 40 0.15
182 105 0.38
183 12 0.04
184 33 0.12
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (180 bp):
CTTATCTCCCTGAAGTTATAGTGGAGCAGGTTAAAGTCACAATCTTATCCCCTGAAGTTTCAGTG
GGTAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAG
CGTATGTCCCTGAAGTTGCAGTGGAACAGATTGAAGCATAAATTACAGAC
Found at i:45260641 original size:45 final size:44
Alignment explanation
Indices: 45260342--45260937 Score: 268
Period size: 44 Copynumber: 13.3 Consensus size: 44
45260332 TAATCTTACC
** * * * * *
45260342 CCCTGAAGTTATAGTGGGGTAGATTGCAGTTACAAGT-TTGATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTCGT-ATCT
* * *
45260386 CCCTGAAGATGCAGTGGAGCAGACTGAAGATAGCAAGTC-TCATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAGTCGT-ATCT
* * * * *
45260431 CCCTGAAGTTGCAGTGGAACAGATT-AAGGCTAAATTATAGACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAA-G--ATA-CA-AG-TCGTATCT
* * * *
45260480 CCCTGAAGTTGTAGTGGAGCAGGTTAAAG-TCACCAA-TCTTAATC-
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-A-CAAGTCGT-ATCT
* * *
45260524 CCCTGAAGTTTCAGTAGG-GCAGATTGAAGTTACAAGTCTTATCT
1 CCCTGAAGTTGCAGT-GGAGCAGATTGAAGATACAAGTCGTATCT
* * *
45260568 CCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAG-CGTATGT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C-AAGTCGTATCT
* * * *
45260613 CCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTATAT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A-CA-AG-TCGTATCT
** ** * * * *
45260664 CATTGAAGTTTTAGTAGAGCAGA-T--ATAT-CAA-ACATTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTC-GTATCT
* * * * *
45260704 CCCTGAAGTTACAGTGGAGTAGGTTGAAGTTACAAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTCGTATCT
* * * * *
45260748 CCCTGAAGTTGCAGTGGAGTAGACTGAAGATACAAATCTTATCC
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTCGTATCT
* * * * * * * *
45260792 CCCTAAATTTGCAATGGGGTAGATTAAAGCTACAAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTCGTATCT
* *
45260836 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATATCTAA-CCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C-AAGTCGTATCT
** * * * *
45260881 CCCTGAAGTTATAGTGGAGCAGGTTAAAGCTACTAA-TCCTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC-AAGTCGTATCT
* *
45260925 CACTGAAATTGCA
1 CCCTGAAGTTGCA
45260938 CCAGAGCGGA
Statistics
Matches: 423, Mismatches: 96, Indels: 66
0.72 0.16 0.11
Matches are distributed among these distances:
39 1 0.00
40 21 0.05
41 2 0.00
42 1 0.00
43 10 0.02
44 207 0.49
45 106 0.25
46 8 0.02
47 7 0.02
48 4 0.01
49 30 0.07
50 4 0.01
51 22 0.05
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTCGTATCT
Found at i:45261799 original size:12 final size:12
Alignment explanation
Indices: 45261771--45261803 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
45261761 AAGTGATTGA
*
45261771 TATTTCCTTTTT
1 TATTTCTTTTTT
45261783 T-TTTCTTTTTT
1 TATTTCTTTTTT
45261794 TATTTCTTTT
1 TATTTCTTTT
45261804 AAATTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (12 bp):
TATTTCTTTTTT
Found at i:45265608 original size:15 final size:16
Alignment explanation
Indices: 45265578--45265610 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
45265568 AAGAAGAACA
*
45265578 AAAGAAATCAAAGCAG
1 AAAGAAAACAAAGCAG
45265594 AAAGAAAAC-AAGCAG
1 AAAGAAAACAAAGCAG
45265609 AA
1 AA
45265611 CAGCAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.67, C:0.12, G:0.18, T:0.03
Consensus pattern (16 bp):
AAAGAAAACAAAGCAG
Found at i:45272793 original size:32 final size:32
Alignment explanation
Indices: 45272752--45272813 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
45272742 TAGGAATTCA
45272752 AGATTTTAAAGATGCTGAAATTGTGAGCGTAT
1 AGATTTTAAAGATGCTGAAATTGTGAGCGTAT
45272784 AGATTTTAAAGATGCTGAAATTGTGAGCGT
1 AGATTTTAAAGATGCTGAAATTGTGAGCGT
45272814 TAAATGTGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (32 bp):
AGATTTTAAAGATGCTGAAATTGTGAGCGTAT
Found at i:45273420 original size:9 final size:9
Alignment explanation
Indices: 45273406--45273430 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
45273396 TATAAGTTTA
45273406 AAAAAATTT
1 AAAAAATTT
45273415 AAAAAATTT
1 AAAAAATTT
45273424 AAAAAAT
1 AAAAAAT
45273431 AAAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (9 bp):
AAAAAATTT
Found at i:45273433 original size:16 final size:16
Alignment explanation
Indices: 45273414--45273459 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
45273404 TAAAAAAATT
45273414 TAAAAAATTTAAAAAA
1 TAAAAAATTTAAAAAA
*
45273430 TAAAACTATTT-AAAAA
1 TAAAA-AATTTAAAAAA
*
45273446 TAAAAGA-TTAAAAA
1 TAAAAAATTTAAAAA
45273460 GATGTTTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 2 0.08
15 5 0.19
16 15 0.58
17 4 0.15
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (16 bp):
TAAAAAATTTAAAAAA
Found at i:45282595 original size:171 final size:171
Alignment explanation
Indices: 45282347--45282964 Score: 1026
Period size: 171 Copynumber: 3.6 Consensus size: 171
45282337 CGGTATGGAG
* * * * * *
45282347 TACAATTTATTTTTAATTTGAAGTTTGGATTTCGGACGTTCGTTTAGGGAAATAAATGAATTACT
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCACT
*
45282412 GGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
66 AGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
**
45282477 TCGTAATATTATTTTTGTCATACGATATGGAGTCTTGCAAT
131 TCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
* *
45282518 TATAATTTATTTTTAGTTTGAAGTTTGGATTTC-GAACCTTTGTTTTGGGAAATGAATGAATCAC
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCAG-ACCTTTGTTTAGGGAAATGAATGAATCAC
*
45282582 TAGAACGTTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCT
65 TAGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCT
*
45282647 CTCGTAATATTATTTTCATCATACGATATGAAGTCTTGCAAT
130 CTCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
*
45282689 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCAGACCTTTGTTTTGGGAAATGAATGAATCACT
1 TACAATTTATTTTTAGTTTGAAGTTTGGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCACT
* * *
45282754 AGAACGTTTTCAAATATTTATTGTGTTCCAATAACTATAAGTGTTCCAGTACTTATTGTAACCTC
66 AGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
45282819 TCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
131 TCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
*
45282860 TACAATTTATTTTTAGTTCT-AAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCAC
1 TACAATTTATTTTTAGTT-TGAAGTTTGGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCAC
45282924 T-GCAACATTTTCAAATATTTATAGTGTTCCAATAACTATAA
65 TAG-AACATTTTCAAATATTTATAGTGTTCCAATAACTATAA
45282965 ATGAATGGGT
Statistics
Matches: 423, Mismatches: 20, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
170 2 0.00
171 419 0.99
172 2 0.00
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (171 bp):
TACAATTTATTTTTAGTTTGAAGTTTGGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCACT
AGAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCCAATACTTATTGTAACCTC
TCGTAATATTATTTTCATCATACGATATGGAGTCTTGCAAT
Found at i:45293409 original size:45 final size:45
Alignment explanation
Indices: 45293344--45294034 Score: 382
Period size: 44 Copynumber: 15.3 Consensus size: 45
45293334 TACAACTTTG
* * *
45293344 ATCTCCCTAAAGATGCAGTGGAGCAGATTGAAGATAGCAAGTCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
* * * * * ** *
45293389 ATTTCCCTAAAGTTGTAGTGGAACAGATT-AAGGCTAAATTATAGACCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-G--ATAGCA-AG-TCTT
* * * *
45293438 ATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAG-TCACCAA-TCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-AGCAAGTCTT
* *
45293482 AT-TCCCCTGAAGTTTCAGTAGG-GCAGATTGAAGTTA-CAAGTCTT
1 ATCT-CCCTGAAGTTGCAGT-GGAGCAGATTGAAGATAGCAAGTCTT
* * *
45293526 ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
* * **
45293571 ATGTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--AGCA-AG-TCTT
* ** ** * * * *
45293622 ATATCTTTGAAGTTTTAGTAGAGCAGA-T---CATATCAA-ACATT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTC-TT
* *
45293663 ATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
* * *
45293707 ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATA-CAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
* * * * * *
45293751 ATCCCCCTAAATTTGCAATGGGGCAGATTGAAGCTA-CAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
* * *
45293795 ATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATATCCAA-CCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-GCAAGTCTT
* * * * * *
45293840 ATCTCCCTAAAGTTACAGTGGAGCAGGTTAAAGCTA-CTAA-TCCT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AAGTCTT
* * *
45293884 ATCTCCCTGAAGTTGCATTGGAGCGGATT-AAAATGATG-AA-TCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-A-GCAAGTCTT
** * ** * * *
45293928 ATAC-CTTTAAAGTTATAGTAGG-TCAGATTAAATCTACCATAGCAAGTCTT
1 AT-CTCCCTGAAGTTGCAGT-GGAGCAGATT-GA---A-GATAGCAAGTCTT
* * *
45293978 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAATATAGCAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
*
45294023 GTCTCCCTGAAG
1 ATCTCCCTGAAG
45294035 ATTACATTGA
Statistics
Matches: 493, Mismatches: 109, Indels: 88
0.71 0.16 0.13
Matches are distributed among these distances:
40 1 0.00
41 22 0.04
42 2 0.00
43 13 0.03
44 219 0.44
45 131 0.27
46 6 0.01
47 7 0.01
48 3 0.01
49 38 0.08
50 27 0.05
51 24 0.05
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (45 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCTT
Found at i:45293526 original size:44 final size:44
Alignment explanation
Indices: 45293324--45293912 Score: 383
Period size: 44 Copynumber: 13.1 Consensus size: 44
45293314 ATAGTGGGGT
* * * *
45293324 AGATTGCAGTTACAACT-TTGATCTCCCTAAAGATGCAGTGGAGC
1 AGATTGAAGTTACAAGTCTT-ATCTCCCTGAAGTTGCAGTGGAGC
* * * * * *
45293368 AGATTGAAGATAGCAAGTCTCATTTCCCTAAAGTTGTAGTGGAAC
1 AGATTGAAGTTA-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * *
45293413 AGATTAAGGCTAAATTA-TAGACCTTATCTCCCTGAAGTTGTAGTGGAGC
1 AGATT---G--AAGTTACAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * *
45293462 AGGTTAAAGTCACCAA-TCTTAT-TCCCCTGAAGTTTCAGTAGG-GC
1 AGATTGAAGTTA-CAAGTCTTATCT-CCCTGAAGTTGCAGT-GGAGC
*
45293506 AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGT
1 AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * *
45293550 AGACTGAAGATAGCAAATCTTATGTCCCTGAAGTTGCAGTGGAAC
1 AGATTGAAGTTA-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* * ** ** *
45293595 AGATTGAAGCTATAAATTACAGATCTTATATCTTTGAAGTTTTAGTAGAGC
1 AGATTGAAG-T-T--A-CA-AG-TCTTATCTCCCTGAAGTTGCAGTGGAGC
* *
45293646 AGA-T-CA--TATCAA-ACATTATCTCCCTGAAGTTGCAGTGGAGC
1 AGATTGAAGTTA-CAAGTC-TTATCTCCCTGAAGTTGCAGTGGAGC
* *
45293687 AGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGT
1 AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * * * * *
45293731 AGACTGAAGATACAAATCTTATCCCCCTAAATTTGCAATGGGGC
1 AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* *
45293775 AGATTGAAGCTACAAGTCTTATCTCCCTGAAGTTACAGTGGAGC
1 AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * *
45293819 AGATTGAAGATATCCAA-CCTTATCTCCCTAAAGTTACAGTGGAGC
1 AGATTGAAG-T-TACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * *
45293864 AGGTTAAAGCTACTAA-TCCTATCTCCCTGAAGTTGCATTGGAGC
1 AGATTGAAGTTAC-AAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
*
45293908 GGATT
1 AGATT
45293913 AAAATGATGA
Statistics
Matches: 420, Mismatches: 94, Indels: 62
0.73 0.16 0.11
Matches are distributed among these distances:
40 1 0.00
41 22 0.05
42 2 0.00
43 12 0.03
44 208 0.50
45 105 0.25
46 6 0.01
47 1 0.00
48 3 0.01
49 30 0.07
50 6 0.01
51 24 0.06
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
Found at i:45293539 original size:88 final size:88
Alignment explanation
Indices: 45293253--45293915 Score: 411
Period size: 88 Copynumber: 7.4 Consensus size: 88
45293243 TTATGGCAAA
* * * * * * * *
45293253 TCTTATCTCCCTAAAGTTGAAGCGAAGCAGATTAAAG-TCGCTAATCTTA--CCCCTTAAAGTTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAT-ACAAATCTTATTCCCC-TGAAGTTG
* * * * *
45293315 TAGTGGGGTAGATTGCAGTTACAAC
64 CAGTGGAGCAGATTGAAGTTACAAG
* * * * * * *
45293340 T-TTGATCTCCCTAAAGATGCAGTGGAGCAGATTGAAGATAGCAAGTCTCATTTCCCTAAAGTTG
1 TCTT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA-CAAATCTTATTCCCCTGAAGTTG
* * * *
45293404 TAGTGGAACAGATTAAGGCTAAATTA-TAG
64 CAGTGGAGCAGATT---G--AAGTTACAAG
* * * * *
45293433 ACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAG-TCACCAATCTTATTCCCCTGAAGTTT
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAT-ACAAATCTTATTCCCCTGAAGTTG
45293497 CAGTAGG-GCAGATTGAAGTTACAAG
64 CAGT-GGAGCAGATTGAAGTTACAAG
* * *
45293522 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTATGT-CCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA-CAAATCTTAT-TCCCCTGAAGTTG
* *
45293586 CAGTGGAACAGATTGAAGCTATAAATTACAG
64 CAGTGGAGCAGATTGAAG-T-T--A-CA-AG
* ** ** * * *
45293617 ATCTTATATCTTTGAAGTTTTAGTAGAGCAGA-T-CATAT-CAAA-CATTA-TCTCCCTGAAGTT
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACAAATC-TTATTC-CCCTGAAGTT
*
45293677 GCAGTGGAGCAGGTTGAAGTTACAAG
63 GCAGTGGAGCAGATTGAAGTTACAAG
* * * * * *
45293703 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATACAAATCTTATCCCCCTAAATTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATTCCCCTGAAGTTGCA
* * *
45293768 ATGGGGCAGATTGAAGCTACAAG
66 GTGGAGCAGATTGAAGTTACAAG
* * * * * *
45293791 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATATCCAACCTTA-TCTCCCTAAAGTTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA-CAAATCTTATTC-CCCTGAAGTTG
* * *
45293855 CAGTGGAGCAGGTTAAAGCTACTAA-
64 CAGTGGAGCAGATTGAAGTTAC-AAG
* * *
45293880 TCCTATCTCCCTGAAGTTGCATTGGAGCGGATTAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
45293916 ATGATGAATC
Statistics
Matches: 450, Mismatches: 89, Indels: 72
0.74 0.15 0.12
Matches are distributed among these distances:
85 24 0.05
86 5 0.01
87 33 0.07
88 122 0.27
89 121 0.27
90 10 0.02
91 3 0.01
92 35 0.08
93 29 0.06
94 39 0.09
95 5 0.01
96 24 0.05
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (88 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATTCCCCTGAAGTTGCA
GTGGAGCAGATTGAAGTTACAAG
Found at i:45293548 original size:182 final size:180
Alignment explanation
Indices: 45293254--45293906 Score: 566
Period size: 181 Copynumber: 3.6 Consensus size: 180
45293244 TATGGCAAAT
* * * * * *
45293254 CTTATCTCCCTAAAGTTGAAGCGAAGCAGATTAAAGTCGCTAATCTTA-CCCCTTAAAGTTAT-A
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTCAC-AATCTTATCCCC-TGAAGTT-TCA
* * * * * * *
45293317 GTGGGGTAGATTGCAGTTACAACT-TTGATCTCCCTAAAGATGCAGTGGAGCAGATTGAAGATAG
63 GT-GGGCAGATTGAAGTTACAAGTCTT-ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAG
* * * *
45293381 CAAGTCTCATTTCCCTAAAGTTGTAGTGGAACAGATT-AAGGC-TAAATTATAGAC
126 CAAATCTCATGTCCCTAAAGTTGCAGTGGAACAGATTGAA-GCATAAATTACAGAC
*
45293435 CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGTCACCAATCTTATTCCCCTGAAGTTTCAG
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTCA-CAATCTTA-TCCCCTGAAGTTTCAG
45293500 TAGGGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
64 T-GGGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
* * *
45293565 AATCTTATGTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGAT
128 AATCTCATGTCCCTAAAGTTGCAGTGGAACAGATTGAAGC-ATAAATTACAGAC
* ** * * * * *
45293619 CTTATATCTTTGAAGTTTTAGTAGAGCAGATCATA-TCA-AA-CATTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTCACAATC-TTATC-CCCTGAAGTTTCAG
*
45293681 TGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATA-CA
64 TGG-GCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCA
* ** * * ** * *
45293745 AATCTTATCCCCCTAAATTTGCAATGGGGCAGATTGAAGC-T--A-CA-AG-T
128 AATCTCATGTCCCTAAAGTTGCAGTGGAACAGATTGAAGCATAAATTACAGAC
** * * * *
45293792 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGAT-ATCCAACCTTATCTCCCTAAAGTTAC
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG-TCA--CAATCTTATC-CCCTGAAGTTTC
* * * * *
45293856 AGTGGAGCAGGTTAAAGCTACTAA-TCCTATCTCCCTGAAGTTGCATTGGAG
62 AGTGG-GCAGATTGAAGTTAC-AAGTCTTATCTCCCTGAAGTTGCAGTGGAG
45293907 CGGATTAAAA
Statistics
Matches: 399, Mismatches: 55, Indels: 40
0.81 0.11 0.08
Matches are distributed among these distances:
173 27 0.07
174 3 0.01
175 2 0.01
176 1 0.00
177 62 0.16
178 4 0.01
180 40 0.10
181 117 0.29
182 95 0.24
183 11 0.03
184 37 0.09
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (180 bp):
CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTCACAATCTTATCCCCTGAAGTTTCAGTG
GGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAAT
CTCATGTCCCTAAAGTTGCAGTGGAACAGATTGAAGCATAAATTACAGAC
Found at i:45293715 original size:181 final size:183
Alignment explanation
Indices: 45293324--45293786 Score: 541
Period size: 182 Copynumber: 2.6 Consensus size: 183
45293314 ATAGTGGGGT
* * * * * * *
45293324 AGATTGCAGTTACAACT-TTGATCTCCCTAAAGATGCAGTGGAGCAGATTGAAGATAGCAAGTCT
1 AGATTGAAGTTACAAGTCTT-ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCT
* * * * *
45293388 CATTTCCCTAAAGTTGTAGTGGAACAGATT-AAGGC--TAAATTATAGACCTTATCTCCCTGAAG
65 TATCTCCCTAAAGTTGCAGTGGAACAGATTGAA-GCTATAAATTACAGACCTTATATCCCTGAAG
* * * *
45293450 TTGTAGTGGAGCAGGTTAAAGTCACCAATCTTATTCCCCTGAAGTTTCAGTAGGGC
129 TTGTAGTAGAGCAGATCAAAGTCA-CAATCTTATTCCCCTGAAGTTGCAGTAGGGC
45293506 AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTT
1 AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTT
* * * **
45293571 ATGTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTATATCTTTGAAGTT
66 ATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGACCTTATATCCCTGAAGTT
* *
45293636 TTAGTAGAGCAGATCATA-TCA-AA-CATTA-TCTCCCTGAAGTTGCAGT-GGAGC
131 GTAGTAGAGCAGATCAAAGTCACAATC-TTATTC-CCCTGAAGTTGCAGTAGG-GC
*
45293687 AGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATA-CAAATCTT
1 AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTT
* * * **
45293751 ATCCCCCTAAATTTGCAATGGGGCAGATTGAAGCTA
66 ATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTA
45293787 CAAGTCTTAT
Statistics
Matches: 244, Mismatches: 30, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
180 42 0.17
181 76 0.31
182 82 0.34
183 7 0.03
184 37 0.15
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (183 bp):
AGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTT
ATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGACCTTATATCCCTGAAGTT
GTAGTAGAGCAGATCAAAGTCACAATCTTATTCCCCTGAAGTTGCAGTAGGGC
Found at i:45294371 original size:15 final size:15
Alignment explanation
Indices: 45294353--45294382 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45294343 ATAAAACCCC
45294353 CCAAAAATTAAAAGT
1 CCAAAAATTAAAAGT
*
45294368 CCAATAATTAAAAGT
1 CCAAAAATTAAAAGT
45294383 TCATTTACAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.13, G:0.07, T:0.23
Consensus pattern (15 bp):
CCAAAAATTAAAAGT
Found at i:45295337 original size:10 final size:11
Alignment explanation
Indices: 45295319--45295347 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
45295309 ACTTTGGCCC
45295319 TTCATTTTATT
1 TTCATTTTATT
45295330 TT-ATTTTATT
1 TTCATTTTATT
45295340 TTCATTTT
1 TTCATTTT
45295348 TTCTTGTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (11 bp):
TTCATTTTATT
Found at i:45295867 original size:26 final size:26
Alignment explanation
Indices: 45295838--45295916 Score: 88
Period size: 26 Copynumber: 3.1 Consensus size: 26
45295828 GTCATGGAGG
* *
45295838 TTATTTATTTTAAATTGCTGTGTATA
1 TTATTTATTTTAAATTGTTGTGCATA
* * *
45295864 TTATTCATTTTAATTTGTTTTGCATA
1 TTATTTATTTTAAATTGTTGTGCATA
**
45295890 TTATTTACCTTAAATTGTTGTGC-TA
1 TTATTTATTTTAAATTGTTGTGCATA
45295915 TT
1 TT
45295917 TACTTTAAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
25 4 0.09
26 39 0.91
ACGTcount: A:0.24, C:0.08, G:0.10, T:0.58
Consensus pattern (26 bp):
TTATTTATTTTAAATTGTTGTGCATA
Found at i:45298071 original size:142 final size:142
Alignment explanation
Indices: 45297815--45298099 Score: 570
Period size: 142 Copynumber: 2.0 Consensus size: 142
45297805 CATTGCAAGT
45297815 ACACTAGCAAACTAGAAACCATGCCATAACCATCAGCTCAGGCACATTATACTCACATTATTTAG
1 ACACTAGCAAACTAGAAACCATGCCATAACCATCAGCTCAGGCACATTATACTCACATTATTTAG
45297880 AACAATACAATCACAACTTATGATTGAAGAAATTTTATTCCCATATATTTAAATGAACTAATTGT
66 AACAATACAATCACAACTTATGATTGAAGAAATTTTATTCCCATATATTTAAATGAACTAATTGT
45297945 TGTCCCACCAAA
131 TGTCCCACCAAA
45297957 ACACTAGCAAACTAGAAACCATGCCATAACCATCAGCTCAGGCACATTATACTCACATTATTTAG
1 ACACTAGCAAACTAGAAACCATGCCATAACCATCAGCTCAGGCACATTATACTCACATTATTTAG
45298022 AACAATACAATCACAACTTATGATTGAAGAAATTTTATTCCCATATATTTAAATGAACTAATTGT
66 AACAATACAATCACAACTTATGATTGAAGAAATTTTATTCCCATATATTTAAATGAACTAATTGT
45298087 TGTCCCACCAAA
131 TGTCCCACCAAA
45298099 A
1 A
45298100 TTTGGATTGG
Statistics
Matches: 143, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
142 143 1.00
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (142 bp):
ACACTAGCAAACTAGAAACCATGCCATAACCATCAGCTCAGGCACATTATACTCACATTATTTAG
AACAATACAATCACAACTTATGATTGAAGAAATTTTATTCCCATATATTTAAATGAACTAATTGT
TGTCCCACCAAA
Found at i:45310427 original size:168 final size:170
Alignment explanation
Indices: 45310011--45310454 Score: 682
Period size: 171 Copynumber: 2.6 Consensus size: 170
45310001 TGGTATGGAG
* * * * *
45310011 TACAATTTATTTTTAATTTGAAGTTTGGATTTCAGACCTTCGTTTAGGGAAATAAATGAATTACT
1 TACAATTTATTTTTAGTTTGAAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCACT
* *
45310076 GGAATATTTTTAAATATTTATAGTGTTCCAATAACTATAAGTGTTCTAATACTTATTGTAACCTC
66 -GAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCTAATACTTATTGTAACCTC
*
45310141 TCGTAATATTAGTTTCGTCATACGATATGAAGTCTTGCAAT
130 TCGTAATATTAGTTTCATCATACGATATGAAGTCTTGCAAT
*
45310182 TACAATTTATTTTTAGTTTGAAG-TTAGGATTTCAGACCTTTGTTTTGGGAAATGAATGAATCAC
1 TACAATTTATTTTTAGTTTGAAGTTTA-GATTTCAGACCTTTGTTTAGGGAAATGAATGAATCAC
* *
45310246 TAGAACGTTTTCAAATATTTATACTGTTCCAATAACTATAAGTGTTC-AATACTTATTGTAACCT
65 T-GAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCTAATACTTATTGTAACCT
* * *
45310310 CTCTTAATATTATTTTCATCATACGAT-TGGAGTCTTGCAAT
129 CTCGTAATATTAGTTTCATCATACGATATGAAGTCTTGCAAT
45310351 TACAATTTATTTTTAGTTCT-AAGTTTAGATTT-AGACCTTTGTTTAGGGAAATGAATGAATCAC
1 TACAATTTATTTTTAGTT-TGAAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCAC
45310414 TGCAACATTTTCAAATATTTATAGTGTTCCAATAACTATAA
65 TG-AACATTTTCAAATATTTATAGTGTTCCAATAACTATAA
45310455 ATGAATGGGT
Statistics
Matches: 251, Mismatches: 18, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
167 1 0.00
168 67 0.27
169 39 0.16
170 47 0.19
171 97 0.39
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (170 bp):
TACAATTTATTTTTAGTTTGAAGTTTAGATTTCAGACCTTTGTTTAGGGAAATGAATGAATCACT
GAACATTTTCAAATATTTATAGTGTTCCAATAACTATAAGTGTTCTAATACTTATTGTAACCTCT
CGTAATATTAGTTTCATCATACGATATGAAGTCTTGCAAT
Found at i:45319296 original size:13 final size:13
Alignment explanation
Indices: 45319280--45319304 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45319270 TTTACAAAAG
45319280 CAAATGGTTTTTA
1 CAAATGGTTTTTA
45319293 CAAATGGTTTTT
1 CAAATGGTTTTT
45319305 GGAAACACGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (13 bp):
CAAATGGTTTTTA
Found at i:45320436 original size:29 final size:29
Alignment explanation
Indices: 45320404--45320463 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
45320394 AAAGAAAAAT
* *
45320404 AATTATGAAAAACAA-TAAAAACTCTTTAA
1 AATTATGAAAAAAAATTAAAAA-TATTTAA
* *
45320433 AATTTTTAAAAAAAATTAAAAATATTTAA
1 AATTATGAAAAAAAATTAAAAATATTTAA
45320462 AA
1 AA
45320464 GGTTCCAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (29 bp):
AATTATGAAAAAAAATTAAAAATATTTAA
Found at i:45326634 original size:8 final size:8
Alignment explanation
Indices: 45326623--45326652 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
45326613 TTTAAAATTC
45326623 AAAAATAT
1 AAAAATAT
45326631 AAAAATAT
1 AAAAATAT
45326639 AAAAATAT
1 AAAAATAT
45326647 AAAAAT
1 AAAAAT
45326653 TCAATCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAAATAT
Found at i:45326635 original size:16 final size:16
Alignment explanation
Indices: 45326616--45326656 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
45326606 AAAAACCTTT
45326616 AAAATTCAAAAATATA
1 AAAATTCAAAAATATA
45326632 AAAATAT-AAAAATATA
1 AAAAT-TCAAAAATATA
45326648 AAAATTCAA
1 AAAATTCAA
45326657 TCTTATCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 1 0.04
16 21 0.91
17 1 0.04
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAATTCAAAAATATA
Found at i:45329516 original size:20 final size:20
Alignment explanation
Indices: 45329484--45329521 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
45329474 TTACCCCAAG
45329484 CCCCCAAACATTTCTACTTT
1 CCCCCAAACATTTCTACTTT
*
45329504 CCCCCTAAA-ATTTTTACT
1 CCCCC-AAACATTTCTACT
45329522 CCTTCCCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.26, C:0.37, G:0.00, T:0.37
Consensus pattern (20 bp):
CCCCCAAACATTTCTACTTT
Found at i:45329533 original size:30 final size:31
Alignment explanation
Indices: 45329499--45329560 Score: 74
Period size: 30 Copynumber: 2.0 Consensus size: 31
45329489 AAACATTTCT
* *
45329499 ACTTT-CCCCCTAAAATTTTTAC-TCCTTCCC
1 ACTTTACCCCC-AAAACTTTTACTTCCCTCCC
*
45329529 ACTTTACTCCCAAAACTTTTACTTCCCTCCC
1 ACTTTACCCCCAAAACTTTTACTTCCCTCCC
45329560 A
1 A
45329561 TCCCAACCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 15 0.56
31 12 0.44
ACGTcount: A:0.23, C:0.40, G:0.00, T:0.37
Consensus pattern (31 bp):
ACTTTACCCCCAAAACTTTTACTTCCCTCCC
Found at i:45329867 original size:18 final size:18
Alignment explanation
Indices: 45329839--45329877 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
45329829 TCCCGCAAAA
45329839 TTTTACTCCCCC-AAACT
1 TTTTACTCCCCCTAAACT
45329856 TTTTATCTCCCCCTAAACT
1 TTTTA-CTCCCCCTAAACT
45329875 TTT
1 TTT
45329878 ACTTCTCACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 5 0.25
18 7 0.35
19 8 0.40
ACGTcount: A:0.21, C:0.36, G:0.00, T:0.44
Consensus pattern (18 bp):
TTTTACTCCCCCTAAACT
Found at i:45336136 original size:42 final size:41
Alignment explanation
Indices: 45336077--45336213 Score: 157
Period size: 42 Copynumber: 3.5 Consensus size: 41
45336067 ATTCATTGGT
* *
45336077 GGTTGCAAAGTGCTGATTCCACAGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG-AAGG
*
45336119 GGTTGCTAAGTGCTGATTCC-CCG-AGTC----AT-TG--GT
1 GGTTGCTAAGTGCTGATTCCACCGTA-TCTTAAATGTGAAGG
45336152 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGG
1 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGG
45336193 GGCTTGCTAAGTGCTGATTCC
1 GG-TTGCTAAGTGCTGATTCC
45336214 CCCGAGGGGT
Statistics
Matches: 80, Mismatches: 4, Indels: 22
0.75 0.04 0.21
Matches are distributed among these distances:
33 21 0.26
34 5 0.06
35 1 0.01
36 2 0.03
37 2 0.03
38 2 0.03
39 2 0.03
40 1 0.01
41 7 0.09
42 37 0.46
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGG
Found at i:45336163 original size:75 final size:74
Alignment explanation
Indices: 45336040--45336215 Score: 307
Period size: 75 Copynumber: 2.4 Consensus size: 74
45336030 TGATTCCCCC
*
45336040 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCAAAGTGCTGATTCCACAGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAGTCATTGGTGGTTGCAAAGTGCTGATTCCACAGTATC
45336105 TTAAATGTG
66 TTAAATGTG
* *
45336114 AAAGGGGTTGCTAAGTGCTGATTCCCCGAGTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
1 -AAGGGGTTGCTAAGTGCTGATTCCCCGAGTCATTGGTGGTTGCAAAGTGCTGATTCCACAGTAT
45336179 CTTAAATGTG
65 CTTAAATGTG
45336189 AAGGGGCTTGCTAAGTGCTGATTCCCC
1 AAGGGG-TTGCTAAGTGCTGATTCCCC
45336216 CGAGGGGTTG
Statistics
Matches: 97, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
74 6 0.06
75 91 0.94
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (74 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAGTCATTGGTGGTTGCAAAGTGCTGATTCCACAGTATC
TTAAATGTG
Found at i:45336222 original size:102 final size:102
Alignment explanation
Indices: 45336116--45336316 Score: 359
Period size: 102 Copynumber: 2.0 Consensus size: 102
45336106 TAAATGTGAA
* *
45336116 AGGGGTTGCTAAGTGCTGATTCCCCGAGTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCT
45336181 TAAATGTG-AAGGGGCTTGCTAAGTGCTGATTCCCCCG
66 TAAATGTGAAAGGGG-TTGCTAAGTGCTGATTCCCCCG
*
45336218 AGGGGTTGCTAAGTGCTGATTTCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCT
45336283 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCC
66 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCC
45336317 TGACTCATTG
Statistics
Matches: 95, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
102 89 0.94
103 6 0.06
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCT
TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:45336315 original size:177 final size:177
Alignment explanation
Indices: 45336012--45336352 Score: 583
Period size: 177 Copynumber: 1.9 Consensus size: 177
45336002 ATTGAATATA
* *
45336012 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
1 AAGGGGCTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
*
45336077 GGTTGCAAAGTGCTGATTCCACAGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
66 GGTTGCAAAGTGCTGATCCCACAGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
* *
45336142 AGTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
131 ACTCATTGGTGGTTGCTAAGTGCTGAATCCACCGTATCTTAAATGTG
* *
45336189 AAGGGGCTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTTCCCGAATCATTGGT
1 AAGGGGCTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * *
45336254 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCTG
66 GGTTGCAAAGTGCTGATCCCACAGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
*
45336319 ACTCATTGGTGGTTGCTAAGTGTTGAATCCACCG
131 ACTCATTGGTGGTTGCTAAGTGCTGAATCCACCG
45336353 ATAACGGATA
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
177 153 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (177 bp):
AAGGGGCTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
GGTTGCAAAGTGCTGATCCCACAGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
ACTCATTGGTGGTTGCTAAGTGCTGAATCCACCGTATCTTAAATGTG
Found at i:45343766 original size:102 final size:102
Alignment explanation
Indices: 45343590--45343820 Score: 390
Period size: 102 Copynumber: 2.3 Consensus size: 102
45343580 ATTGAATATA
*
45343590 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
*
45343655 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
66 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
* ** * *
45343692 AAGGGGGTTGCTAAGTGTTGATTCCCCTGAGGGGTTGCTAAGTGCTGATTTCTCGAATCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
45343757 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
66 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
*
45343794 AAAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGGTTGCTAAGTGCTGATTCCCC
45343821 GACTCATTGG
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 120 1.00
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
Found at i:45345021 original size:32 final size:32
Alignment explanation
Indices: 45344980--45345080 Score: 112
Period size: 40 Copynumber: 2.9 Consensus size: 32
45344970 GGCCCATTTT
45344980 TATTTTAAAAATTTTTAAAAATAAAAAAAAAG
1 TATTTTAAAAATTTTTAAAAATAAAAAAAAAG
45345012 TATTTTAAAAATATTTTAAAATAAAAAAATAAAAAAAAAG
1 TATTTT-AAAA-ATTTT----T--AAAAATAAAAAAAAAG
*
45345052 TATTTTAAAAATATTTTAAAATTAAAAAA
1 TATTTTAAAAAT-TTTTAAAAATAAAAAA
45345081 TAAAAAAATT
Statistics
Matches: 59, Mismatches: 1, Indels: 17
0.77 0.01 0.22
Matches are distributed among these distances:
32 6 0.10
33 15 0.25
34 5 0.08
35 1 0.02
38 3 0.05
39 7 0.12
40 22 0.37
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (32 bp):
TATTTTAAAAATTTTTAAAAATAAAAAAAAAG
Found at i:45345034 original size:10 final size:11
Alignment explanation
Indices: 45344980--45345032 Score: 56
Period size: 10 Copynumber: 4.9 Consensus size: 11
45344970 GGCCCATTTT
45344980 TATTTTAAAAA
1 TATTTTAAAAA
45344991 T-TTTTAAAAA
1 TATTTTAAAAA
***
45345001 TA-AAAAAAAA
1 TATTTTAAAAA
45345011 GTATTTTAAAAA
1 -TATTTTAAAAA
45345023 TATTTTAAAA
1 TATTTTAAAA
45345033 TAAAAAAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
10 15 0.45
11 13 0.39
12 5 0.15
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:45345051 original size:40 final size:41
Alignment explanation
Indices: 45344996--45345162 Score: 240
Period size: 40 Copynumber: 4.2 Consensus size: 41
45344986 AAAAATTTTT
45344996 AAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAA-TAA
1 AAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
45345036 AAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAATT-A
1 AAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
*
45345076 AAAAAT--AAAAAAATTATTTTAAAAATATTTTAAAATTTAA
1 AAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAA-TTAA
* * *
45345116 AAAAAT--TAAAAAAGTA-TGTAAAAAAATTTTAAAATTAA
1 AAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
45345154 AAAAATAAA
1 AAAAATAAA
45345163 TATACTTATT
Statistics
Matches: 116, Mismatches: 6, Indels: 10
0.88 0.05 0.08
Matches are distributed among these distances:
38 38 0.33
39 18 0.16
40 59 0.51
41 1 0.01
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.31
Consensus pattern (41 bp):
AAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
Found at i:45345103 original size:78 final size:76
Alignment explanation
Indices: 45344994--45345162 Score: 232
Period size: 78 Copynumber: 2.2 Consensus size: 76
45344984 TTAAAAATTT
* *
45344994 TTAAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAA-TAAAAAAATAAAAAAAAAGTATTTT
1 TTAAAAA-ATAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAAT--AAAAAAAGTA-TGT
*
45345058 AAAAATATTTTAAAA
62 AAAAAAATTTTAAAA
* *
45345073 TTAAAAAATAAAAAAATTATTTTAAAAATATTTTAAAATTTAAAAAAATTAAAAAAGTATGTAAA
1 TTAAAAAATAAAAAAAGTATTTTAAAAATATTTTAAAA-TTAAAAAAATAAAAAAAGTATGTAAA
45345138 AAAATTTTAAAA
65 AAAATTTTAAAA
45345150 TTAAAAAAATAAA
1 TT-AAAAAATAAA
45345163 TATACTTATT
Statistics
Matches: 82, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
77 18 0.22
78 48 0.59
79 7 0.09
80 9 0.11
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (76 bp):
TTAAAAAATAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATAAAAAAAGTATGTAAAA
AAATTTTAAAA
Found at i:45345149 original size:21 final size:18
Alignment explanation
Indices: 45345093--45345159 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
45345083 AAAAAATTAT
*
45345093 TTTAAAAATATTTTAAAA
1 TTTAAAAAAATTTTAAAA
**
45345111 TTTAAAAAAATTAAAAAA
1 TTTAAAAAAATTTTAAAA
45345129 GTATGTAAAAAAATTTTAAAA
1 -T-T-TAAAAAAATTTTAAAA
45345150 -TTAAAAAAAT
1 TTTAAAAAAAT
45345160 AAATATACTT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
17 9 0.22
18 16 0.39
19 1 0.02
20 1 0.02
21 14 0.34
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
TTTAAAAAAATTTTAAAA
Found at i:45347196 original size:18 final size:17
Alignment explanation
Indices: 45347148--45347197 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
45347138 CACTTAAAAG
45347148 AATTTTATTTTAATAAT
1 AATTTTATTTTAATAAT
* * *
45347165 GATATTAATGTTAATAAT
1 AAT-TTTATTTTAATAAT
45347183 AAATTTTATTTTAAT
1 -AATTTTATTTTAAT
45347198 TAAAAAATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
17 2 0.08
18 21 0.84
19 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (17 bp):
AATTTTATTTTAATAAT
Found at i:45348590 original size:19 final size:22
Alignment explanation
Indices: 45348541--45348586 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
45348531 AATCTATAAC
45348541 CTCTATAATCATTTTACTTCTT
1 CTCTATAATCATTTTACTTCTT
45348563 CTCTATAATCATTTTACTTCTT
1 CTCTATAATCATTTTACTTCTT
45348585 CT
1 CT
45348587 TAATTCTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.54
Consensus pattern (22 bp):
CTCTATAATCATTTTACTTCTT
Found at i:45350537 original size:24 final size:24
Alignment explanation
Indices: 45350501--45350556 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
45350491 AATTTGAGTT
45350501 TTGATTTGAGTGTTGTGATGGCAA
1 TTGATTTGAGTGTTGTGATGGCAA
* *
45350525 TTGGTTTGAGTGTTGTGATGGCAG
1 TTGATTTGAGTGTTGTGATGGCAA
45350549 TTGATTTG
1 TTGATTTG
45350557 GTCCTTGATC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.16, C:0.04, G:0.36, T:0.45
Consensus pattern (24 bp):
TTGATTTGAGTGTTGTGATGGCAA
Found at i:45355347 original size:29 final size:27
Alignment explanation
Indices: 45355290--45355349 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 27
45355280 AAGAATTATG
* *
45355290 AAAAAATAAAAATTTTTTAGAATTCAA
1 AAAAAATAAAAATATTTTAAAATTCAA
45355317 AAAAAATAAAAAAATATTTTAAAATAT-AA
1 AAAAAAT--AAAAATATTTTAAAAT-TCAA
45355346 AAAA
1 AAAA
45355350 TTACAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 7 0.25
29 20 0.71
30 1 0.04
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (27 bp):
AAAAAATAAAAATATTTTAAAATTCAA
Found at i:45374551 original size:90 final size:90
Alignment explanation
Indices: 45374398--45374563 Score: 323
Period size: 90 Copynumber: 1.8 Consensus size: 90
45374388 GATCAAGATG
45374398 CAGGAGATGTTTGAAATGTCTGATTTAGGGAAAATGTCCTATTTTCTGGGAATGGAGGTGACACA
1 CAGGAGATGTTTGAAATGTCTGATTTAGGGAAAATGTCCTATTTTCTGGGAATGGAGGTGACACA
45374463 AACACAAGATGGGATATTCCTAAGA
66 AACACAAGATGGGATATTCCTAAGA
45374488 CAGGAGATGTTTGAAATGTCTGATTTAGGGAAAATGTCCTATTTTCTGGGAATGGAGGTGACACA
1 CAGGAGATGTTTGAAATGTCTGATTTAGGGAAAATGTCCTATTTTCTGGGAATGGAGGTGACACA
*
45374553 AACACAGGATG
66 AACACAAGATG
45374564 CCTCGAAGAT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 75 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.28
Consensus pattern (90 bp):
CAGGAGATGTTTGAAATGTCTGATTTAGGGAAAATGTCCTATTTTCTGGGAATGGAGGTGACACA
AACACAAGATGGGATATTCCTAAGA
Found at i:45382247 original size:19 final size:19
Alignment explanation
Indices: 45382225--45382270 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
45382215 TTGTTTAGAA
45382225 TTTAAAAA-ATAAAAAAGAT
1 TTTAAAAACATAAAAAA-AT
45382244 TTTAAAAACATAAAAAAAT
1 TTTAAAAACATAAAAAAAT
*
45382263 TGTAAAAA
1 TTTAAAAA
45382271 TTCAATGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.26
Consensus pattern (19 bp):
TTTAAAAACATAAAAAAAT
Found at i:45382251 original size:20 final size:19
Alignment explanation
Indices: 45382228--45382270 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
45382218 TTTAGAATTT
*
45382228 AAAAAATAAAAAAGATTTTA
1 AAAAAATAAAAAA-ATTGTA
*
45382248 AAAACATAAAAAAATTGTA
1 AAAAAATAAAAAAATTGTA
45382267 AAAA
1 AAAA
45382271 TTCAATGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (19 bp):
AAAAAATAAAAAAATTGTA
Found at i:45385300 original size:30 final size:30
Alignment explanation
Indices: 45385258--45385316 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
45385248 TTCTCACTCC
45385258 CAAGCTTCTGAACG-CAATATCGAGTCTTCA
1 CAAGCTTCTGAACGAC-ATATCGAGTCTTCA
*
45385288 CAAGC-TCTTGAACGACATATCTAGTCTTC
1 CAAGCTTC-TGAACGACATATCGAGTCTTC
45385317 TCAATCCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 2 0.08
30 23 0.88
31 1 0.04
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
CAAGCTTCTGAACGACATATCGAGTCTTCA
Found at i:45385349 original size:66 final size:66
Alignment explanation
Indices: 45385207--45385386 Score: 150
Period size: 66 Copynumber: 2.7 Consensus size: 66
45385197 AGAAAAATCA
* * * * * * * * * * * * *
45385207 AATATCAAATCTTTTCAAGCTCCTAAACAAGATATCATGTATTCTCACTCCCAAGCTTCTGAACG
1 AATATCGAGTCTTTCCAAACTCCTGAACAACATATTAGGTCTTCTCAATCCCAAGATCCTAAACG
45385272 C
66 C
* * *
45385273 AATATCGAGTC-TTCACAAGCTCTTGAACGACATATCTA-GTCTTCTCAATCCCAAGATCCTAAA
1 AATATCGAGTCTTTC-CAAACTCCTGAACAACATAT-TAGGTCTTCTCAATCCCAAGATCCTAAA
45385336 CG-
64 CGC
* *
45385338 AGATATTGAGTCTTTCCAAACTCCTGAACAAGATATTAGGTCTTCTCAA
1 A-ATATCGAGTCTTTCCAAACTCCTGAACAACATATTAGGTCTTCTCAA
45385387 GTTCCTGAAC
Statistics
Matches: 91, Mismatches: 18, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
65 5 0.05
66 82 0.90
67 4 0.04
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.30
Consensus pattern (66 bp):
AATATCGAGTCTTTCCAAACTCCTGAACAACATATTAGGTCTTCTCAATCCCAAGATCCTAAACG
C
Found at i:45387194 original size:20 final size:21
Alignment explanation
Indices: 45387160--45387199 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
45387150 AAAGTCTATC
*
45387160 TATTTTGGTTTTTATTTGAAG
1 TATTTTGGTTTTTATATGAAG
45387181 TATTTTGG-TTTTATATGAA
1 TATTTTGGTTTTTATATGAA
45387200 ATGAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (21 bp):
TATTTTGGTTTTTATATGAAG
Found at i:45397829 original size:22 final size:21
Alignment explanation
Indices: 45397794--45397891 Score: 78
Period size: 21 Copynumber: 4.7 Consensus size: 21
45397784 AAAGGGTATC
* *
45397794 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
45397815 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
*
45397838 TACATATCATATCTC--AGAT
1 TACAAATCATATCTCTAAGAT
*
45397857 TGCATATATCATA--TCTAAGAT
1 TACA-A-ATCATATCTCTAAGAT
* *
45397878 TGCATATCATATCT
1 TACAAATCATATCT
45397892 AGGATTGCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
19 15 0.24
21 20 0.32
22 17 0.27
23 11 0.17
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:45397837 original size:23 final size:22
Alignment explanation
Indices: 45397794--45397851 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
45397784 AAAGGGTATC
* *
45397794 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
45397815 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
45397838 TACATATCATATCT
1 TACAAATCATATCT
45397852 CAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:45397862 original size:19 final size:19
Alignment explanation
Indices: 45397830--45397923 Score: 134
Period size: 19 Copynumber: 4.8 Consensus size: 19
45397820 AATCATATCT
*
45397830 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
*
45397849 TCTCAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
45397870 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
45397889 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
45397908 CCTAAGATTGCATATC
1 TCTAAGATTGCATATC
45397924 CTCAAAAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
19 49 0.73
21 18 0.27
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:45399578 original size:18 final size:17
Alignment explanation
Indices: 45399537--45399584 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
45399527 CTTTTTAATC
45399537 TTTTA-TTTTTAAATAG
1 TTTTATTTTTTAAATAG
**
45399553 TTTTATTTTTTAAATTT
1 TTTTATTTTTTAAATAG
45399570 TTTTAATTTTTTAAA
1 TTTT-ATTTTTTAAA
45399585 AACTTATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.18
17 13 0.46
18 10 0.36
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTTATTTTTTAAATAG
Found at i:45409600 original size:26 final size:26
Alignment explanation
Indices: 45409569--45409627 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
45409559 CAATTTAAGT
*
45409569 TAAATAATATGCAAAACAAATTAAAA
1 TAAATAATATACAAAACAAATTAAAA
* * * *
45409595 TGAATAATATACACAGCAATTTAAAA
1 TAAATAATATACAAAACAAATTAAAA
45409621 TAAATAA
1 TAAATAA
45409628 CCTCCATGAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.61, C:0.08, G:0.05, T:0.25
Consensus pattern (26 bp):
TAAATAATATACAAAACAAATTAAAA
Found at i:45411119 original size:15 final size:15
Alignment explanation
Indices: 45411099--45411128 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45411089 GTGTAAATGA
45411099 ACTTTTAATTTTTGG
1 ACTTTTAATTTTTGG
*
45411114 ACTTTTATTTTTTGG
1 ACTTTTAATTTTTGG
45411129 GGGGGTTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.13, T:0.63
Consensus pattern (15 bp):
ACTTTTAATTTTTGG
Found at i:45411614 original size:44 final size:44
Alignment explanation
Indices: 45411566--45412189 Score: 294
Period size: 44 Copynumber: 13.9 Consensus size: 44
45411556 GATTCATCGT
* * * * *
45411566 TTTAATCCATTCCACTGCAACTTCAAGGAGATAGGATTAGTAGC
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * * * *
45411610 TTTAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGATATC
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGC
* * * * *
45411655 TTCAATCTGCTCCACTGCAGCTTCAGGGAGATAAGACTTGTAGT
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * * * *
45411699 TTTAATCTGCCCCACTGCAAATTCAGGGGGATAAGATTTGTATC
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * * * *
45411743 TTCAGTCTACTCCACTGCAACTTCAAGGAGATAAGACTTGTAAC
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
* * * ** * ** * *
45411787 -TTGATCTGCTCTACTAAAACTTAAAAGATATAAGATCTGTAATTTATAGC
1 TTTAATCTACTCCACTGCAACTTCAGGGAGAT-A-A---G--ATTTGTAGC
* ** * * *
45411837 TTCAATCTGTTCCACTGCAACTTTAGGGACATAAGATTTGCTATC
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGC
* * * * *
45411882 TTCAGTCTACTCCTCTGTAACTTCAGGGAGATAAGACTTT-TAAC
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGA-TTTGTAGC
* * ** *
45411926 TTCAATCTGC-CCTACTAAAACTTCAGGG-GAATAAGATTGGT-GAC
1 TTTAATCTACTCC-ACTGCAACTTCAGGGAG-ATAAGATTTGTAG-C
* * *
45411970 TTTAACCTACTCCACTACAACTTCAGGGAGGTAAGGTCTATAATT-TAGC
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAA-G---AT--TTGTAGC
* ** * * *
45412019 CTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTTGCTATC
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGC
* * * * * *
45412064 TTCAGTCTGCTCCACTGCATCTTCAGGGAGATCAA-ACTTGTAAC
1 TTTAATCTACTCCACTGCAACTTCAGGGAGAT-AAGATTTGTAGC
** * * * * *
45412108 TGCAATCTACCCCACTGTAACTTCACGGG-G-CAAGATTAGTGGC
1 TTTAATCTACTCCACTGCAACTTCA-GGGAGATAAGATTTGTAGC
* * * *
45412151 TTTAATCTATTTCACTGTAACTTTAGGGAGATAAGATTT
1 TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTT
45412190 ATCATAATGA
Statistics
Matches: 431, Mismatches: 118, Indels: 62
0.71 0.19 0.10
Matches are distributed among these distances:
42 5 0.01
43 53 0.12
44 193 0.45
45 112 0.26
46 5 0.01
48 4 0.01
49 29 0.07
50 9 0.02
51 21 0.05
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
TTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC
Found at i:45411685 original size:89 final size:88
Alignment explanation
Indices: 45411576--45411784 Score: 285
Period size: 89 Copynumber: 2.4 Consensus size: 88
45411566 TTTAATCCAT
* * * *
45411576 TCCACTGCAACTTCAAGGAGATAGGA-TTAGTAGCTTTAACCTGCTCCACTGTAACTTCAGGGAG
1 TCCACTGCAACTTCAAGGAGATAAGACTT-GTAGCTTTAACCTGCCCCACTGCAAATTCAGGGAG
* *
45411640 ATAAGGTTTGATATCTTCAATCTGC
65 ATAAGATTTG-TATCTTCAATCTAC
* * * * *
45411665 TCCACTGCAGCTTCAGGGAGATAAGACTTGTAGTTTTAATCTGCCCCACTGCAAATTCAGGGGGA
1 TCCACTGCAACTTCAAGGAGATAAGACTTGTAGCTTTAACCTGCCCCACTGCAAATTCAGGGAGA
*
45411730 TAAGATTTGTATCTTCAGTCTAC
66 TAAGATTTGTATCTTCAATCTAC
45411753 TCCACTGCAACTTCAAGGAGATAAGACTTGTA
1 TCCACTGCAACTTCAAGGAGATAAGACTTGTA
45411785 ACTTGATCTG
Statistics
Matches: 105, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
88 42 0.40
89 61 0.58
90 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (88 bp):
TCCACTGCAACTTCAAGGAGATAAGACTTGTAGCTTTAACCTGCCCCACTGCAAATTCAGGGAGA
TAAGATTTGTATCTTCAATCTAC
Found at i:45412240 original size:182 final size:181
Alignment explanation
Indices: 45411848--45412226 Score: 404
Period size: 182 Copynumber: 2.1 Consensus size: 181
45411838 TCAATCTGTT
* * * *
45411848 CCACTGCAACTTTAGGGACATAAGATTTGCTATCTTCAGTCTACTCCTCTGTAACTTCAGGGAGA
1 CCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGA
* * * * * *
45411913 TAAGACTTTTAACTTCAATCTGCCCTACTAAAACTTCAGGGGAATAAGATTGGTGACTTTAACCT
66 TAAGACTTGTAACTGCAATCTACCCCACTAAAACTTCAGGGG-ACAAGATTAGTGACTTTAACCT
* * * * ** *
45411978 ACTCCACTACAACTTCAGGGAGGTAAGGTCTATAATTTAGCCTTAATCTGTT
130 ACTCCACTACAACTTCAGGGAGATAAGATCTATAAATGAGCCTTAATCCATC
* * *
45412030 CCACTGCAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTGCTCCACTGCATCTTCAGGGAGA
1 CCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGA
** * *
45412095 TCAA-ACTTGTAACTGCAATCTACCCCACTGTAACTTCACGGGG-CAAGATTAGTGGCTTTAATC
66 T-AAGACTTGTAACTGCAATCTACCCCACTAAAACTTCA-GGGGACAAGATTAGTGACTTTAACC
* * ** * * *
45412158 TATTTCACTGTAACTTTAGGGAGATAAGATTTATCATAATGA-CTTTAATCCATC
129 TACTCCACTACAACTTCAGGGAGATAAGATCTAT-A-AATGAGCCTTAATCCATC
*
45412212 CCACTGTAACTTCAG
1 CCACTGCAACTTCAG
45412227 TTGTATAAGA
Statistics
Matches: 161, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
181 42 0.26
182 110 0.68
183 9 0.06
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (181 bp):
CCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGA
TAAGACTTGTAACTGCAATCTACCCCACTAAAACTTCAGGGGACAAGATTAGTGACTTTAACCTA
CTCCACTACAACTTCAGGGAGATAAGATCTATAAATGAGCCTTAATCCATC
Found at i:45416799 original size:22 final size:21
Alignment explanation
Indices: 45416769--45416826 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
45416759 ATACAATCGT
*
45416769 AGATTTGATATGTAATCTTAG
1 AGATTTGATTTGTAATCTTAG
*
45416790 AAGATATGATTTTGTAATCTTAG
1 -AGATTTGA-TTTGTAATCTTAG
45416813 AGATTTGATTTGTA
1 AGATTTGATTTGTA
45416827 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 14 0.44
23 12 0.38
ACGTcount: A:0.33, C:0.03, G:0.19, T:0.45
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:45416809 original size:23 final size:22
Alignment explanation
Indices: 45416779--45416823 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
45416769 AGATTTGATA
45416779 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAG-AGATATGATTT
*
45416802 TGTAATCTTAGAGATTTGATTT
1 TGTAATCTTAGAGATATGATTT
45416824 GTAGATACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (22 bp):
TGTAATCTTAGAGATATGATTT
Found at i:45421946 original size:22 final size:21
Alignment explanation
Indices: 45421916--45421973 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
45421906 ATACAATCGT
*
45421916 AGATTTGATATGTAATCTTAG
1 AGATTTGATTTGTAATCTTAG
*
45421937 AAGATATGATTTTGTAATCTTAG
1 -AGATTTGA-TTTGTAATCTTAG
45421960 AGATTTGATTTGTA
1 AGATTTGATTTGTA
45421974 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 14 0.44
23 12 0.38
ACGTcount: A:0.33, C:0.03, G:0.19, T:0.45
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:45421956 original size:23 final size:22
Alignment explanation
Indices: 45421926--45421970 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
45421916 AGATTTGATA
45421926 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAG-AGATATGATTT
*
45421949 TGTAATCTTAGAGATTTGATTT
1 TGTAATCTTAGAGATATGATTT
45421971 GTAGATACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (22 bp):
TGTAATCTTAGAGATATGATTT
Found at i:45425851 original size:43 final size:43
Alignment explanation
Indices: 45425790--45426017 Score: 366
Period size: 43 Copynumber: 5.3 Consensus size: 43
45425780 CTAACTCTAA
*
45425790 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCAC
45425833 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCAC
* *
45425876 AAACGCCGCTAAAGACCAAGACCTTTAGCGCCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCAC
* *
45425919 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCAC
* * * * *
45425962 AAACGCCGCTAAAGATCAGGACCTTTAACAGTGCTTTTACCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCAC
45426005 AAACGCCGCTAAA
1 AAACGCCGCTAAA
45426018 AACATGACTT
Statistics
Matches: 174, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 174 1.00
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCAC
Found at i:45426239 original size:18 final size:18
Alignment explanation
Indices: 45426216--45426275 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
45426206 TTAAAACAAG
45426216 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
*** * *
45426234 TTACATAAGAAAATT-G-T
1 TTACAT-TCTATATTAGAA
45426251 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
45426269 TTACATT
1 TTACATT
45426276 AGAATTACAT
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 4 0.14
17 7 0.24
18 14 0.48
19 4 0.14
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (18 bp):
TTACATTCTATATTAGAA
Found at i:45432001 original size:13 final size:13
Alignment explanation
Indices: 45431983--45432007 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45431973 TGTCAATCTA
45431983 TTACATTAATTTG
1 TTACATTAATTTG
45431996 TTACATTAATTT
1 TTACATTAATTT
45432008 TTATTTATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (13 bp):
TTACATTAATTTG
Found at i:45432501 original size:7 final size:7
Alignment explanation
Indices: 45432491--45432535 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
45432481 CACTAACTCT
45432491 TAACCCC
1 TAACCCC
*
45432498 TAACCTC
1 TAACCCC
45432505 TAACCCC
1 TAACCCC
45432512 TAACCCC
1 TAACCCC
**
45432519 TAACTAC
1 TAACCCC
45432526 TAACCCC
1 TAACCCC
45432533 TAA
1 TAA
45432536 ATCTTATTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (7 bp):
TAACCCC
Found at i:45432507 original size:21 final size:21
Alignment explanation
Indices: 45432491--45432535 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
45432481 CACTAACTCT
45432491 TAACCCCTAACCTCTAACCCC
1 TAACCCCTAACCTCTAACCCC
45432512 TAACCCCTAA-CTACTAACCCC
1 TAACCCCTAACCT-CTAACCCC
45432533 TAA
1 TAA
45432536 ATCTTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (21 bp):
TAACCCCTAACCTCTAACCCC
Found at i:45433307 original size:41 final size:41
Alignment explanation
Indices: 45433243--45433485 Score: 342
Period size: 41 Copynumber: 5.9 Consensus size: 41
45433233 TCAAAAACGG
* *
45433243 GCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* * * * **
45433284 GCATTAGTGGCACTTCTTCAAAAACACCGCTAAAGGTCTAA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* * * *
45433325 GCATTAGCGGAGCTTCTTCAAAAACGCCACTAAAGGTCTGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
*
45433366 GCATTAGTGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
45433407 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* * *
45433448 GCGTTAGCGGCGCTTCTTCAAAAACTCCACTAAAGGCC
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCC
45433486 TCAAAAACTC
Statistics
Matches: 179, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 179 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (41 bp):
GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
Found at i:45433581 original size:39 final size:39
Alignment explanation
Indices: 45433527--45433655 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
45433517 TAGGCTTGTT
* * *
45433527 GCGGCGCTTTTCAAAAAACACCGCTAATGCTT-ATTTTTT
1 GCGGCG-TTTTCAAAAAGCGCCGCTAATGCTTGATTTTTA
**
45433566 GCGGCGTTTTCCAAAAAGCGCCGCTAATGCTTGACCTTTA
1 GCGGCGTTTT-CAAAAAGCGCCGCTAATGCTTGATTTTTA
*
45433606 GCGGCGTTTTTAGAAAAGCGCCGCTAATGCTTGATTTTTA
1 GCGGCGTTTTCA-AAAAGCGCCGCTAATGCTTGATTTTTA
*
45433646 GTGGCGTTTT
1 GCGGCGTTTT
45433656 TTGTCCAAAC
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
38 4 0.05
39 26 0.33
40 48 0.62
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (39 bp):
GCGGCGTTTTCAAAAAGCGCCGCTAATGCTTGATTTTTA
Found at i:45434407 original size:20 final size:20
Alignment explanation
Indices: 45434370--45434412 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45434360 AAAATAAACA
* **
45434370 TATAATTATTTATTTAATAT
1 TATAATTATTCAAATAATAT
45434390 TATAATTATTCAAATAATAT
1 TATAATTATTCAAATAATAT
45434410 TAT
1 TAT
45434413 TGAAATAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TATAATTATTCAAATAATAT
Found at i:45434691 original size:17 final size:18
Alignment explanation
Indices: 45434653--45434691 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
45434643 TTACAATATG
**
45434653 TATTGGAACACTTATAGT
1 TATTGGAACACTTATAAA
45434671 TATTGGAACAC-TATAAA
1 TATTGGAACACTTATAAA
45434688 TATT
1 TATT
45434692 TGAAAACGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (18 bp):
TATTGGAACACTTATAAA
Found at i:45434862 original size:17 final size:18
Alignment explanation
Indices: 45434819--45434862 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
45434809 AGAGGTTACA
*
45434819 ATAAGTATTGGAACACTT
1 ATAAATATTGGAACACTT
**
45434837 ATAGTTATTGGAACAC-T
1 ATAAATATTGGAACACTT
45434854 ATAAATATT
1 ATAAATATT
45434863 TGAAAATGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (18 bp):
ATAAATATTGGAACACTT
Found at i:45434865 original size:171 final size:171
Alignment explanation
Indices: 45434567--45434941 Score: 626
Period size: 171 Copynumber: 2.2 Consensus size: 171
45434557 NNNNNNNNNN
* * *
45434567 AATCTAAACTT-AGAACTAAAAATAAATTGTAATTGCAAGACTCCATATCGTATGATGAAAATAA
1 AATCCAAACTTCA-AACTAAAAATAAATTGTACTTGCAAGACTCCATATCGTATGACGAAAATAA
*
45434631 TATTACGAGAGGTTACAATATGTATTGGAACACTTATAGTTATTGGAACACTATAAATATTTGAA
65 TATTACGAGAGGTTACAATAAGTATTGGAACACTTATAGTTATTGGAACACTATAAATATTTGAA
* *
45434696 AACGTTCTAGTGATTCATTCATTTCCCAAAACAAAGGTCCGA
130 AACGTTCCAGTAATTCATTCATTTCCCAAAACAAAGGTCCGA
*
45434738 AATCCAAACTTCAAACTAAAAATAAATTGTACTTGCAAGACTCCATATCGTATGACGCAAATAAT
1 AATCCAAACTTCAAACTAAAAATAAATTGTACTTGCAAGACTCCATATCGTATGACGAAAATAAT
45434803 ATTACGAGAGGTTACAATAAGTATTGGAACACTTATAGTTATTGGAACACTATAAATATTTGAAA
66 ATTACGAGAGGTTACAATAAGTATTGGAACACTTATAGTTATTGGAACACTATAAATATTTGAAA
* * * *
45434868 ATGTTCCAGTAATTCATTTATTTCCCTAAACGAAGGTCCGA
131 ACGTTCCAGTAATTCATTCATTTCCCAAAACAAAGGTCCGA
*
45434909 AATCCAAACTTCAAATTAAAAATAAATTGTACT
1 AATCCAAACTTCAAACTAAAAATAAATTGTACT
45434942 CCATACCGTA
Statistics
Matches: 191, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
171 190 0.99
172 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (171 bp):
AATCCAAACTTCAAACTAAAAATAAATTGTACTTGCAAGACTCCATATCGTATGACGAAAATAAT
ATTACGAGAGGTTACAATAAGTATTGGAACACTTATAGTTATTGGAACACTATAAATATTTGAAA
ACGTTCCAGTAATTCATTCATTTCCCAAAACAAAGGTCCGA
Found at i:45439264 original size:98 final size:98
Alignment explanation
Indices: 45439094--45439289 Score: 347
Period size: 98 Copynumber: 2.0 Consensus size: 98
45439084 TGCAATAAAC
* *
45439094 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGACATCACACCCAATACGTTAGGGCACGATTC
1 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
*
45439159 CTCTAAAATCTCAAACTCGGAATATTTCATTTA
66 CTCTAAAATCCCAAACTCGGAATATTTCATTTA
45439192 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
1 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
* *
45439257 CTTTAAAATCCCAAACTCGGAATATTTCCTTTA
66 CTCTAAAATCCCAAACTCGGAATATTTCATTTA
45439290 TTATTTTTAA
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
CTCTAAAATCCCAAACTCGGAATATTTCATTTA
Found at i:45440125 original size:44 final size:44
Alignment explanation
Indices: 45440066--45440278 Score: 130
Period size: 44 Copynumber: 4.8 Consensus size: 44
45440056 CTATAACCAC
* * * *
45440066 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGCTT
** * **
45440110 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTG-TCT
1 AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGCT-T
* *** * * *
45440154 AGGGA-AGT-AGAAT-TACTGGCTTCAATGTACTCCACTA-TAACCAT
1 AGGGAGA-TAAG-ATCTGCCATCTTCAATCTACTCCACTACT--GCTT
* * * * *
45440198 AGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGCTT
** *
45440242 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACT
1 AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACT
45440279 GTTGCCCAGG
Statistics
Matches: 120, Mismatches: 39, Indels: 20
0.67 0.22 0.11
Matches are distributed among these distances:
42 1 0.01
43 20 0.17
44 81 0.68
45 17 0.14
46 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
AGGGAGATAAGATCTGCCATCTTCAATCTACTCCACTACTGCTT
Found at i:45440291 original size:132 final size:132
Alignment explanation
Indices: 45440022--45440366 Score: 622
Period size: 132 Copynumber: 2.6 Consensus size: 132
45440012 NNNNNNNNNN
*
45440022 CCAGGGAAGTAGAATTACT-GCTTCAATGTACT-CACTATAACCACAGGGAGGTAAAATCTGCCA
1 CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCATAGGGAGGTAAAATCTGCCA
45440085 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTT
*
45440150 GT
131 GC
* *
45440152 CTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCATAGGGAGGTAAAATCCGCCA
1 CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCATAGGGAGGTAAAATCTGCCA
45440217 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTT
45440282 GC
131 GC
*
45440284 CCAGGGAAGTAGAATAACTGGCTTCAATGTACTCCACTATAACCATAGGGAGGTAAAATCTGCCA
1 CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCATAGGGAGGTAAAATCTGCCA
*
45440349 TCTTCGATATGCTCCACT
66 TCTTCGATCTGCTCCACT
45440367 GTCAATGCAG
Statistics
Matches: 205, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
130 18 0.09
131 13 0.06
132 174 0.85
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (132 bp):
CCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCATAGGGAGGTAAAATCTGCCA
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTT
GC
Found at i:45441644 original size:12 final size:12
Alignment explanation
Indices: 45441629--45441668 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
45441619 CCATTTTTCC
45441629 TTTTTTTTTTGT
1 TTTTTTTTTTGT
*
45441641 TTTTTGTTTTGT
1 TTTTTTTTTTGT
45441653 TTTTTTTTTTGT
1 TTTTTTTTTTGT
45441665 TTTT
1 TTTT
45441669 ATGAATCTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (12 bp):
TTTTTTTTTTGT
Found at i:45441650 original size:17 final size:16
Alignment explanation
Indices: 45441630--45441668 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 16
45441620 CATTTTTCCT
45441630 TTTTTTTTTGTTTTTTG
1 TTTTTTTTT-TTTTTTG
45441647 TTTTGTTTTTTTTTTTG
1 TTTT-TTTTTTTTTTTG
45441664 TTTTT
1 TTTTT
45441669 ATGAATCTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.05
17 15 0.71
18 5 0.24
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (16 bp):
TTTTTTTTTTTTTTTG
Found at i:45445983 original size:98 final size:98
Alignment explanation
Indices: 45445812--45446008 Score: 376
Period size: 98 Copynumber: 2.0 Consensus size: 98
45445802 GTGCAATAAA
*
45445812 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
45445877 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
45445910 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
45445975 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
45446008 A
1 A
45446009 TTATTTTTAA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 97 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:45446827 original size:2 final size:2
Alignment explanation
Indices: 45446820--45446861 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
45446810 TAGAAACAAG
45446820 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45446862 GCTAAAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45447331 original size:7 final size:7
Alignment explanation
Indices: 45447319--45447361 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
45447309 TTCTCTCCTC
45447319 CTCTTTT
1 CTCTTTT
45447326 CTCTTTT
1 CTCTTTT
*
45447333 -TCTTTC
1 CTCTTTT
45447339 CTCTTTT
1 CTCTTTT
45447346 CTCTTTT
1 CTCTTTT
45447353 -TCTTTT
1 CTCTTTT
45447359 CTC
1 CTC
45447362 CCCCTTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 11 0.34
7 21 0.66
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (7 bp):
CTCTTTT
Found at i:45447336 original size:13 final size:14
Alignment explanation
Indices: 45447319--45447361 Score: 63
Period size: 13 Copynumber: 3.2 Consensus size: 14
45447309 TTCTCTCCTC
45447319 CTCTTTTCTCTTTT
1 CTCTTTTCTCTTTT
*
45447333 -TCTTTCCTCTTTT
1 CTCTTTTCTCTTTT
45447346 CTCTTTT-TCTTTT
1 CTCTTTTCTCTTTT
45447359 CTC
1 CTC
45447362 CCCCTTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 21 0.81
14 5 0.19
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
CTCTTTTCTCTTTT
Found at i:45447340 original size:20 final size:20
Alignment explanation
Indices: 45447317--45447357 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
45447307 TTTTCTCTCC
45447317 TCCTCTTTTCTCTTTTTCTT
1 TCCTCTTTTCTCTTTTTCTT
45447337 TCCTCTTTTCTCTTTTTCTT
1 TCCTCTTTTCTCTTTTTCTT
45447357 T
1 T
45447358 TCTCCCCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (20 bp):
TCCTCTTTTCTCTTTTTCTT
Found at i:45447342 original size:28 final size:26
Alignment explanation
Indices: 45447298--45447358 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
45447288 CTGCCAATCG
* *
45447298 TTCTTTTTTTTTTCTCTCCTCCTCTTT
1 TTCTTTTTCTTTCCTCT-CTCCTCTTT
* *
45447325 TCTCTTTTTCTTTCCTCTTTTCTCTTT
1 T-TCTTTTTCTTTCCTCTCTCCTCTTT
45447352 TTCTTTT
1 TTCTTTT
45447359 CTCCCCCTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.21
27 9 0.31
28 14 0.48
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (26 bp):
TTCTTTTTCTTTCCTCTCTCCTCTTT
Found at i:45447496 original size:22 final size:21
Alignment explanation
Indices: 45447461--45447596 Score: 81
Period size: 19 Copynumber: 6.7 Consensus size: 21
45447451 AAAGGATATC
* *
45447461 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
45447482 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
*
45447505 TACATATCATATCTC--AGAT
1 TACAAATCATATCTCTAAGAT
*
45447524 TGCATATATCATA--TCTAAGAT
1 TACA-A-ATCATATCTCTAAGAT
* * *
45447545 TGCATATCATA--TCTATGAT
1 TACAAATCATATCTCTAAGAT
* *
45447564 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
45447583 TGCATATCATATCT
1 TACAAATCATATCT
45447597 AAGATTGCAT
Statistics
Matches: 99, Mismatches: 8, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
19 51 0.52
21 20 0.20
22 17 0.17
23 11 0.11
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:45447504 original size:23 final size:22
Alignment explanation
Indices: 45447461--45447518 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
45447451 AAAGGATATC
* *
45447461 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
45447482 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
45447505 TACATATCATATCT
1 TACAAATCATATCT
45447519 CAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:45447529 original size:19 final size:19
Alignment explanation
Indices: 45447497--45447609 Score: 181
Period size: 19 Copynumber: 5.8 Consensus size: 19
45447487 AATCATATCT
*
45447497 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
*
45447516 TCTCAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
45447537 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
45447556 TCTATGATTGCATATCATA
1 TCTAAGATTGCATATCATA
45447575 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
45447594 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
45447610 CTCAAAAATT
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
19 69 0.79
21 18 0.21
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:45452937 original size:44 final size:44
Alignment explanation
Indices: 45452804--45453328 Score: 227
Period size: 44 Copynumber: 11.6 Consensus size: 44
45452794 CTCCAGTTTG
* *
45452804 CTCCACTGCAACTTCAAGGAGATAAGGCTTGCTATGGTAGATTTAATCTGA
1 CTCCACTGCAACTTCAAGGAGATAA-G-AT--T-T-GTAGCTTTAATCT-A
* * * ** * * *
45452855 C-CTACTGTAACTTCAGAGG-TATAAGATTCATCGTTTTAATCCA
1 CTCCACTGCAACTTCA-AGGAGATAAGATTTGTAGCTTTAATCTA
* * * * *
45452898 TTCCACTGCAACTTCAAGGAGATAGGATTAGTAGCTTTAACCTG
1 CTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTA
* * * * *
45452942 CTCCACTGTAACTTCAGGGAGATAAGGTTTGATATCTTTAATCTG
1 CTCCACTGCAACTTCAAGGAGATAAGATTTG-TAGCTTTAATCTA
* * * *
45452987 CTCCACTGTAGCTTC-AGAGAGATAAGACTTGTAGCTTTAATCTG
1 CTCCACTGCAACTTCAAG-GAGATAAGATTTGTAGCTTTAATCTA
* * * * * * *
45453031 CCCCACTGCAAATTCAGGGGGATAAGATTTGTATCTTCAGTCTA
1 CTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTA
* * * * * *
45453075 CTCCACTGCAACTTCAAAGAGATAAGACTTGTAACTTCAACCTG
1 CTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTA
* ** * * * * *
45453119 CTCTACTAAAACTTCAAAGATATAAGATCTGTAATTTATAGCTTCAATCTG
1 CTCCACTGCAACTTCAAGGAGAT-A-A---G--ATTTGTAGCTTTAATCTA
* * * * * * *
45453170 TTCCACTGCAACTTTAGGGACATAAGATTTGCTATCTTCAGTCTA
1 CTCCACTGCAACTTCAAGGAGATAAGATTTG-TAGCTTTAATCTA
* * * * *
45453215 CTCCTCTGCAACTTCAGGGAGATAAGACTTT-TAACTTCAATCTG
1 CTCCACTGCAACTTCAAGGAGATAAGA-TTTGTAGCTTTAATCTA
* * * *
45453259 C-CCTACTGAAACTTC-AGGGGAATAAGATTGGT-GACTTTAACCTA
1 CTCC-ACTGCAACTTCAAGGAG-ATAAGATTTGTAG-CTTTAATCTA
* * *
45453303 CTCCACTACAACTTCAGGGAGGTAAG
1 CTCCACTGCAACTTCAAGGAGATAAG
45453329 GTCTGTAATT
Statistics
Matches: 357, Mismatches: 96, Indels: 49
0.71 0.19 0.10
Matches are distributed among these distances:
43 11 0.03
44 210 0.59
45 76 0.21
46 6 0.02
48 1 0.00
49 3 0.01
50 17 0.05
51 33 0.09
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (44 bp):
CTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTA
Found at i:45453009 original size:89 final size:87
Alignment explanation
Indices: 45452899--45453121 Score: 268
Period size: 89 Copynumber: 2.5 Consensus size: 87
45452889 TTTAATCCAT
* * *
45452899 TCCACTGCAACTTCAAGGAGATAGGA-TTAGTAGCTTTAACCTGCTCCACTGTAACTTCAGGGAG
1 TCCACTGCAACTTCAA-GAGATAAGACTT-GTAGCTTTAACCTGCTCCACTGCAAATTCAGGGAG
* * *
45452963 ATAAGGTTTGATATCTTTAATCTGC
64 ATAAGATTTG-TATCTTCAATCTAC
* * * * *
45452988 TCCACTGTAGCTTCAGAGAGATAAGACTTGTAGCTTTAATCTGCCCCACTGCAAATTCAGGGGGA
1 TCCACTGCAACTTCA-AGAGATAAGACTTGTAGCTTTAACCTGCTCCACTGCAAATTCAGGGAGA
*
45453053 TAAGATTTGTATCTTCAGTCTAC
65 TAAGATTTGTATCTTCAATCTAC
* *
45453076 TCCACTGCAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCTC
1 TCCACTGCAACTTC-AAGAGATAAGACTTGTAGCTTTAACCTGCTC
45453122 TACTAAAACT
Statistics
Matches: 113, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
88 49 0.43
89 61 0.54
90 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (87 bp):
TCCACTGCAACTTCAAGAGATAAGACTTGTAGCTTTAACCTGCTCCACTGCAAATTCAGGGAGAT
AAGATTTGTATCTTCAATCTAC
Found at i:45453146 original size:88 final size:88
Alignment explanation
Indices: 45452899--45453134 Score: 269
Period size: 88 Copynumber: 2.7 Consensus size: 88
45452889 TTTAATCCAT
* * **
45452899 TCCACTGCAACTTCAAGGAGATAGGA-TTAGTAGCTTTAACCTGCTCCACTGTAACTTCAGGGAG
1 TCCACTGCAACTTCAAAGAGATAAGACTT-GTAGCTTTAACCTGCTCCACTAAAACTTCAGGGAG
* * *
45452963 ATAAGGTTTGATATCTTTAATCTGC
65 ATAAGATTTG-TATCTTCAATCTAC
* * * * * * *
45452988 TCCACTGTAGCTTCAGAGAGATAAGACTTGTAGCTTTAATCTGCCCCACTGCAAA-TTCAGGGGG
1 TCCACTGCAACTTCAAAGAGATAAGACTTGTAGCTTTAACCTGCTCCACT-AAAACTTCAGGGAG
*
45453052 ATAAGATTTGTATCTTCAGTCTAC
65 ATAAGATTTGTATCTTCAATCTAC
* * *
45453076 TCCACTGCAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCTCTACTAAAACTTCA
1 TCCACTGCAACTTCAAAGAGATAAGACTTGTAGCTTTAACCTGCTCCACTAAAACTTCA
45453135 AAGATATAAG
Statistics
Matches: 121, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
87 3 0.02
88 57 0.47
89 57 0.47
90 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (88 bp):
TCCACTGCAACTTCAAAGAGATAAGACTTGTAGCTTTAACCTGCTCCACTAAAACTTCAGGGAGA
TAAGATTTGTATCTTCAATCTAC
Found at i:45453286 original size:140 final size:139
Alignment explanation
Indices: 45453018--45453274 Score: 379
Period size: 140 Copynumber: 1.8 Consensus size: 139
45453008 ATAAGACTTG
* **
45453018 TAGCTTTAATCTGCCCCACTGCAAATTCAGGGGGATAAGATTTGTATCTTCAGTCTACTCCACTG
1 TAGCTTCAATCTGCCCCACTGCAAATTCAGGGACATAAGATTTGTATCTTCAGTCTACTCCACTG
*
45453083 CAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCTCTACTAAAACTTCAAAGATATAAGATC
66 CAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCCCTACTAAAACTTCAAAGATATAAGATC
45453148 TGTAATTTA
131 TGTAATTTA
** * * *
45453157 TAGCTTCAATCTGTTCCACTGCAACTTTAGGGACATAAGATTTGCTATCTTCAGTCTACTCCTCT
1 TAGCTTCAATCTGCCCCACTGCAAATTCAGGGACATAAGATTTG-TATCTTCAGTCTACTCCACT
** * * *
45453222 GCAACTTCAGGGAGATAAGACTTTTAACTTCAATCTGCCCTACTGAAACTTCA
65 GCAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCCCTACTAAAACTTCA
45453275 GGGGAATAAG
Statistics
Matches: 103, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
139 37 0.36
140 66 0.64
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.32
Consensus pattern (139 bp):
TAGCTTCAATCTGCCCCACTGCAAATTCAGGGACATAAGATTTGTATCTTCAGTCTACTCCACTG
CAACTTCAAAGAGATAAGACTTGTAACTTCAACCTGCCCTACTAAAACTTCAAAGATATAAGATC
TGTAATTTA
Found at i:45457834 original size:18 final size:19
Alignment explanation
Indices: 45457787--45457835 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
45457777 CAATTAAACA
45457787 ATTTTATTTTAATAAGGAT
1 ATTTTATTTTAATAAGGAT
* * *
45457806 A-TTAATGTTAATAA-TAT
1 ATTTTATTTTAATAAGGAT
45457823 ATTTTATTTTAAT
1 ATTTTATTTTAAT
45457836 TAAAAAAGAT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.83
19 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (19 bp):
ATTTTATTTTAATAAGGAT
Found at i:45461198 original size:20 final size:20
Alignment explanation
Indices: 45461161--45461203 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45461151 AAAATAAACA
* **
45461161 TATAATTATTTATTTAATAT
1 TATAATTATTCAAATAATAT
45461181 TATAATTATTCAAATAATAT
1 TATAATTATTCAAATAATAT
45461201 TAT
1 TAT
45461204 TGAAATAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TATAATTATTCAAATAATAT
Found at i:45461469 original size:17 final size:18
Alignment explanation
Indices: 45461426--45461469 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
45461416 AGAGGTTACA
*
45461426 ATAAGTATTGGAACACTT
1 ATAAATATTGGAACACTT
**
45461444 ATAGTTATTGGAACAC-T
1 ATAAATATTGGAACACTT
45461461 ATAAATATT
1 ATAAATATT
45461470 TGAAAACGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (18 bp):
ATAAATATTGGAACACTT
Found at i:45461556 original size:171 final size:170
Alignment explanation
Indices: 45461271--45461717 Score: 727
Period size: 171 Copynumber: 2.6 Consensus size: 170
45461261 CCCATTCATT
* *
45461271 TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTGCAGTGATTCATTCATTTCCCTAAACA
1 TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTCCAGTAATTCATTCATTTCCCTAAAC-
* *
45461336 AAGGTCTGAAATCTAAACTT-AGAACTAAAAATAAATTGTAATTGCAAGACTCCATATCGTAAGA
65 AAGGTCCGAAATCCAAACTTCA-AACTAAAAATAAATTGTAATTGCAAGACTCCATATCGTAAGA
*
45461400 TGAAAATAATATTACGAGAGGTTACAA-TAAGTATTGGAACAC
129 CGAAAATAATATTACGAGAGGTTACAATTAA-TATTGGAACAC
* *
45461442 TTATAGTTATTGGAACACTATAAATATTTGAAAACGTTCCAGTAATTCATTCATTTCCCAAAACA
1 TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTCCAGTAATTCATTCATTTCCCTAAACA
*
45461507 ATGGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTAATTGCAAGACTCCATATCGTATGAC
66 A-GGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTAATTGCAAGACTCCATATCGTAAGAC
*
45461572 GCAAATAATATTACGAGAGGTTACAATTAATATTGGAACAC
130 GAAAATAATATTACGAGAGGTTACAATTAATATTGGAACAC
* *
45461613 TTATAGTTATTGGAACACTATAAATATTTAAAAATGTTCCAGTAATTCATTTATTTCCCTAAACG
1 TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTCCAGTAATTCATTCATTTCCCTAAAC-
*
45461678 AAGGTCCGAAATCCAAACTTCAAATTAAAAATAAATTGTA
65 AAGGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTA
45461718 CTCCATACCG
Statistics
Matches: 258, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
170 2 0.01
171 250 0.97
172 6 0.02
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (170 bp):
TTATAGTTATTGGAACACTATAAATATTTGAAAATGTTCCAGTAATTCATTCATTTCCCTAAACA
AGGTCCGAAATCCAAACTTCAAACTAAAAATAAATTGTAATTGCAAGACTCCATATCGTAAGACG
AAAATAATATTACGAGAGGTTACAATTAATATTGGAACAC
Done.