Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60982465
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 868082 characters in sequence are not A, C, G, or T
File 197 of 204
Found at i:58297594 original size:19 final size:19
Alignment explanation
Indices: 58297401--58297517 Score: 124
Period size: 19 Copynumber: 6.6 Consensus size: 19
58297391 TGAATATTGT
*
58297401 AATATTATAATTTTGTATG
1 AATATTGTAATTTTGTATG
*
58297420 AATATTGTAATTTT-TTTG
1 AATATTGTAATTTTGTATG
*
58297438 --TA-TG-AATATTG--T-
1 AATATTGTAATTTTGTATG
58297450 AATATTGTAATTTTGTATG
1 AATATTGTAATTTTGTATG
* *
58297469 AATATTATAATTTTTTATG
1 AATATTGTAATTTTGTATG
*
58297488 AATATTGTAATGTTGTATG
1 AATATTGTAATTTTGTATG
58297507 AATATTGTAAT
1 AATATTGTAAT
58297518 ATTATAATTT
Statistics
Matches: 81, Mismatches: 9, Indels: 16
0.76 0.08 0.15
Matches are distributed among these distances:
13 1 0.01
14 7 0.09
15 4 0.05
16 8 0.10
18 4 0.05
19 57 0.70
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (19 bp):
AATATTGTAATTTTGTATG
Found at i:58297677 original size:27 final size:27
Alignment explanation
Indices: 58297646--58297697 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
58297636 ATATTTTGTT
58297646 CACCATTGGCGCCTCCCAAATAGGCAC
1 CACCATTGGCGCCTCCCAAATAGGCAC
* *
58297673 CACCATTGGCGCCTTCCAGATAGGC
1 CACCATTGGCGCCTCCCAAATAGGC
58297698 GCCAATACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.38, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCATTGGCGCCTCCCAAATAGGCAC
Found at i:58300097 original size:14 final size:14
Alignment explanation
Indices: 58300078--58300105 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
58300068 TCATCCTCGC
58300078 ATTTTAAAATATTT
1 ATTTTAAAATATTT
58300092 ATTTTAAAATATTT
1 ATTTTAAAATATTT
58300106 CATAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTTTAAAATATTT
Found at i:58303555 original size:18 final size:19
Alignment explanation
Indices: 58303534--58303572 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
58303524 GTTAAGTTAA
58303534 AAAAATAACAAA-AAAAAT
1 AAAAATAACAAATAAAAAT
**
58303552 AAAAATATTAAATAAAAAT
1 AAAAATAACAAATAAAAAT
58303571 AA
1 AA
58303573 CATATATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (19 bp):
AAAAATAACAAATAAAAAT
Found at i:58303591 original size:20 final size:18
Alignment explanation
Indices: 58303543--58303591 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
58303533 AAAAAATAAC
58303543 AAAAAAAATAAAAATATT
1 AAAAAAAATAAAAATATT
*
58303561 AAATAAAAATAACATATATT
1 AAA-AAAAATAA-AAATATT
58303581 AAAAAATAATA
1 AAAAAA-AATA
58303592 TGGTAGACTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 3 0.11
19 11 0.41
20 13 0.48
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAAAAAATAAAAATATT
Found at i:58303998 original size:17 final size:16
Alignment explanation
Indices: 58303969--58304002 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
58303959 AACATAAATC
58303969 TCATTATAAATTTTTA
1 TCATTATAAATTTTTA
*
58303985 TCATATATATATTTTTA
1 TCAT-TATAAATTTTTA
58304002 T
1 T
58304003 ATAATACTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (16 bp):
TCATTATAAATTTTTA
Found at i:58304438 original size:28 final size:29
Alignment explanation
Indices: 58304384--58304438 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
58304374 ATGGGAGTAA
* *
58304384 TTTTATTTTAGTTATTTATGTTTTTTTGT
1 TTTTATTTTAGTTATTTATCTTATTTTGT
*
58304413 TTTTA-TTTATTTATTTATCTTATTTT
1 TTTTATTTTAGTTATTTATCTTATTTT
58304439 AGTTAGTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.76
Consensus pattern (29 bp):
TTTTATTTTAGTTATTTATCTTATTTTGT
Found at i:58307494 original size:18 final size:18
Alignment explanation
Indices: 58307473--58307507 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
58307463 AATAAATAAT
*
58307473 AATTTTAATATATTTTAC
1 AATTTTAATAAATTTTAC
58307491 AATTTTAATAAATTTTA
1 AATTTTAATAAATTTTA
58307508 ATTGTTGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
AATTTTAATAAATTTTAC
Found at i:58310182 original size:17 final size:18
Alignment explanation
Indices: 58310153--58310199 Score: 62
Period size: 17 Copynumber: 2.6 Consensus size: 18
58310143 AATTATTAAA
58310153 AAAATTCAAAATAATTT-T
1 AAAATTCAAAAT-ATTTAT
58310171 AAAATT-AAAATATTTAT
1 AAAATTCAAAATATTTAT
58310188 AAAATTCCAAAA
1 AAAATT-CAAAA
58310200 ATTATAACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 4 0.15
17 12 0.46
18 6 0.23
19 4 0.15
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (18 bp):
AAAATTCAAAATATTTAT
Found at i:58310371 original size:16 final size:16
Alignment explanation
Indices: 58310352--58310382 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
58310342 TTGAAAAAGT
58310352 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
58310368 TTTCAAATTTATATG
1 TTTCAAATATATATG
58310383 CCTCAACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:58312742 original size:21 final size:21
Alignment explanation
Indices: 58312713--58312752 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
58312703 ATTACCCATT
*
58312713 TATAAATATTTTTTAAATAAA
1 TATAAATATATTTTAAATAAA
*
58312734 TATATATATATTTTAAATA
1 TATAAATATATTTTAAATA
58312753 TATTGCTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TATAAATATATTTTAAATAAA
Found at i:58314409 original size:20 final size:19
Alignment explanation
Indices: 58314373--58314411 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
58314363 ATATATTTTT
*
58314373 TATTTTTTTATTTTTAAAA
1 TATTTTTGTATTTTTAAAA
*
58314392 TATTTTTGTGTTTATTAAAA
1 TATTTTTGTATTT-TTAAAA
58314412 ATCGGGCCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (19 bp):
TATTTTTGTATTTTTAAAA
Found at i:58315795 original size:14 final size:14
Alignment explanation
Indices: 58315776--58315803 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
58315766 TAATTAACTC
58315776 CAAAAATATAAACA
1 CAAAAATATAAACA
58315790 CAAAAATATAAACA
1 CAAAAATATAAACA
58315804 ATGAAACATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14
Consensus pattern (14 bp):
CAAAAATATAAACA
Found at i:58319125 original size:13 final size:13
Alignment explanation
Indices: 58319107--58319155 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
58319097 TAATATTAAA
58319107 ATATTTTTAAAAT
1 ATATTTTTAAAAT
**
58319120 ATATTTTTAATTTT
1 ATATTTTTAA-AAT
*
58319134 TTATTTTTAAAAT
1 ATATTTTTAAAAT
*
58319147 AAATTTTTA
1 ATATTTTTA
58319156 GTGTTTTATT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
13 18 0.64
14 10 0.36
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATATTTTTAAAAT
Found at i:58319142 original size:27 final size:27
Alignment explanation
Indices: 58319108--58319165 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
58319098 AATATTAAAA
* *
58319108 TATTTTTAAAATATATTTTTAATTTTT
1 TATTTTTAAAATAAATTTTTAATGTTT
*
58319135 TATTTTTAAAATAAATTTTTAGTGTTT
1 TATTTTTAAAATAAATTTTTAATGTTT
58319162 TATT
1 TATT
58319166 AAAAAATGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (27 bp):
TATTTTTAAAATAAATTTTTAATGTTT
Found at i:58319657 original size:29 final size:29
Alignment explanation
Indices: 58319624--58319679 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
58319614 AAAAGCCAAT
58319624 TTTTTTAAAAAATTACCGAAATGGGCCGG
1 TTTTTTAAAAAATTACCGAAATGGGCCGG
** * *
58319653 TTTTTTAATTATTTACCGGAATGGGCC
1 TTTTTTAAAAAATTACCGAAATGGGCC
58319680 ATTTTCCCCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.38
Consensus pattern (29 bp):
TTTTTTAAAAAATTACCGAAATGGGCCGG
Found at i:58319921 original size:22 final size:22
Alignment explanation
Indices: 58319896--58319965 Score: 113
Period size: 22 Copynumber: 3.2 Consensus size: 22
58319886 AAATTCAATA
58319896 TCAATTTCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
*
58319918 TCAATTCCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
* *
58319940 TCAAATTCCTTCCAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
58319962 TCAA
1 TCAA
58319966 ACTCTCAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (22 bp):
TCAATTTCCTTCAAAAATTCTC
Found at i:58319972 original size:30 final size:30
Alignment explanation
Indices: 58319937--58319995 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
58319927 TTCAAAAATT
*
58319937 CTCTCAAATTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
58319967 CTCTCAAATTCCTTCCAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
58319996 TTTCCTTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:58319981 original size:52 final size:51
Alignment explanation
Indices: 58319915--58320017 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
58319905 TTCAAAAATT
* * *
58319915 CTCTCAATTCCCTTCAAAAATTCTCTCAAATTCCTTCCAAAATTCTCTCAAA
1 CTCTCAATTCCCTTCAAAAATCCTCTCAAATTCCTTCAAAAAATCTC-CAAA
* *
58319967 CTCTCAAATT-CCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
1 CTCTC-AATTCCCTTCAAAAATCCTCTCAAATTCCTTCAAAAAATCTCCAAA
58320018 TCCATATTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 4 0.09
52 37 0.82
53 4 0.09
ACGTcount: A:0.34, C:0.33, G:0.00, T:0.33
Consensus pattern (51 bp):
CTCTCAATTCCCTTCAAAAATCCTCTCAAATTCCTTCAAAAAATCTCCAAA
Found at i:58320006 original size:21 final size:22
Alignment explanation
Indices: 58319967--58320008 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
58319957 TTCTCTCAAA
58319967 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
58319989 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCCAAAA
58320009 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:58320093 original size:28 final size:29
Alignment explanation
Indices: 58320050--58320104 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
58320040 TTAAATTTCA
*
58320050 TTTTTTTAAGAAAATTTTAAATTTTTTTG
1 TTTTTTTAAGAAAATTTTAAAATTTTTTG
*
58320079 TTTTTTTAA-ATAATTTTAAAATTTTT
1 TTTTTTTAAGAAAATTTTAAAATTTTT
58320105 AATATTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.64
Consensus pattern (29 bp):
TTTTTTTAAGAAAATTTTAAAATTTTTTG
Found at i:58320112 original size:29 final size:29
Alignment explanation
Indices: 58320049--58320112 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
58320039 ATTAAATTTC
* *
58320049 ATTTTTTTAAGAAAATTTTAAATTTTTTT
1 ATTTTTTTAAGAAAATTTTAAAATTTTTA
* *
58320078 GTTTTTTTAA-ATAATTTTAAAATTTTTA
1 ATTTTTTTAAGAAAATTTTAAAATTTTTA
*
58320106 ATATTTT
1 ATTTTTT
58320113 CAACAATGGC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
28 20 0.69
29 9 0.31
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (29 bp):
ATTTTTTTAAGAAAATTTTAAAATTTTTA
Found at i:58320243 original size:22 final size:23
Alignment explanation
Indices: 58320212--58320256 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
58320202 ATTTTATTTA
*
58320212 AGATATTTTATTTATGTATTTTT
1 AGATATTTTATTAATGTATTTTT
*
58320235 AGATA-TTTATTAATTTATTTTT
1 AGATATTTTATTAATGTATTTTT
58320257 TGTTATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (23 bp):
AGATATTTTATTAATGTATTTTT
Found at i:58333040 original size:15 final size:15
Alignment explanation
Indices: 58333022--58333050 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
58333012 AAACATAAAC
58333022 TTAAATAACAACATT
1 TTAAATAACAACATT
58333037 TTAAATAACAACAT
1 TTAAATAACAACAT
58333051 CAATTAACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (15 bp):
TTAAATAACAACATT
Found at i:58333571 original size:41 final size:37
Alignment explanation
Indices: 58333449--58333581 Score: 106
Period size: 40 Copynumber: 3.4 Consensus size: 37
58333439 ACCAGTTTGG
* *
58333449 CACCTAGTGCCTCATCGGATAATTCGAAGTAATAATTTGA
1 CACCCAGTGCCTCATC-GATAATCCGAAGT-ATAA-TTGA
* * * * * *
58333489 TACCCGGTGTCTCATCGGCTAAACCGAAGTA-AATTGG
1 CACCCAGTGCCTCATC-GATAATCCGAAGTATAATTGA
58333526 CACCCAGTGCCTCATCGAATTAATCCGAAGTAGGTAATTGA
1 CACCCAGTGCCTCATCG-A-TAATCCGAAGTA--TAATTGA
*
58333567 CACCCAGTGTCTCAT
1 CACCCAGTGCCTCAT
58333582 TGACTCAAAT
Statistics
Matches: 73, Mismatches: 15, Indels: 9
0.75 0.15 0.09
Matches are distributed among these distances:
36 1 0.01
37 16 0.22
38 13 0.18
39 1 0.01
40 23 0.32
41 19 0.26
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGATAATCCGAAGTATAATTGA
Found at i:58334384 original size:2 final size:2
Alignment explanation
Indices: 58334377--58334407 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
58334367 ACAATAGAAC
58334377 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58334408 CCATCACCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:58336047 original size:10 final size:10
Alignment explanation
Indices: 58335963--58336075 Score: 50
Period size: 9 Copynumber: 12.2 Consensus size: 10
58335953 CTATAATAAC
58335963 TATAAAAATA
1 TATAAAAATA
58335973 TA-AAAAAT-
1 TATAAAAATA
* *
58335981 TA-CAAAGTA
1 TATAAAAATA
*
58335990 T-TAAAAACA
1 TATAAAAATA
*
58335999 TA-AACAAT-
1 TATAAAAATA
** *
58336007 TATTCAAATT
1 TATAAAAATA
58336017 TATAAAAATA
1 TATAAAAATA
*
58336027 T-TAAAATTA
1 TATAAAAATA
58336036 TATAAAAATA
1 TATAAAAATA
58336046 TA-AATAAA-A
1 TATAA-AAATA
*
58336055 T-TAAAGAGT-
1 TATAAA-AATA
58336064 TATAAAAATA
1 TATAAAAATA
58336074 TA
1 TA
58336076 AATAAATTAC
Statistics
Matches: 74, Mismatches: 17, Indels: 24
0.64 0.15 0.21
Matches are distributed among these distances:
8 9 0.12
9 37 0.50
10 28 0.38
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.31
Consensus pattern (10 bp):
TATAAAAATA
Found at i:58336050 original size:17 final size:18
Alignment explanation
Indices: 58335963--58336046 Score: 64
Period size: 19 Copynumber: 4.6 Consensus size: 18
58335953 CTATAATAAC
* *
58335963 TATAAAAATATAAAAAAT
1 TATAAAAATATTAAAATT
* * *
58335981 TA-CAAAGTATTAAAA-A
1 TATAAAAATATTAAAATT
* *
58335997 CATAAACAATTATTCAAATT
1 TATAAA-AA-TATTAAAATT
58336017 TATAAAAATATTAAAATT
1 TATAAAAATATTAAAATT
58336035 ATATAAAAATAT
1 -TATAAAAATAT
58336047 AAATAAAATT
Statistics
Matches: 50, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
16 1 0.02
17 12 0.24
18 12 0.24
19 20 0.40
20 5 0.10
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (18 bp):
TATAAAAATATTAAAATT
Found at i:58340381 original size:13 final size:12
Alignment explanation
Indices: 58340354--58340387 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
58340344 AAATGAATAG
*
58340354 AAGAAAAAAAGA
1 AAGAAAAAAACA
58340366 AAGAAAAAGAACA
1 AAGAAAAA-AACA
58340379 AAGAAAAAA
1 AAGAAAAAA
58340388 GAGAGAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (12 bp):
AAGAAAAAAACA
Found at i:58340631 original size:33 final size:33
Alignment explanation
Indices: 58340589--58340655 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
58340579 AGTAAGACAT
58340589 TTTCCACAGCTCATCTCTTCACTCTCTTCACCC
1 TTTCCACAGCTCATCTCTTCACTCTCTTCACCC
* *
58340622 TTTCCACAGCTCCTCTTTTCACTCTCTTCACCC
1 TTTCCACAGCTCATCTCTTCACTCTCTTCACCC
58340655 T
1 T
58340656 AACGATTGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.13, C:0.45, G:0.03, T:0.39
Consensus pattern (33 bp):
TTTCCACAGCTCATCTCTTCACTCTCTTCACCC
Found at i:58340685 original size:14 final size:14
Alignment explanation
Indices: 58340666--58340695 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
58340656 AACGATTGCA
58340666 GCCTCATCATCTCT
1 GCCTCATCATCTCT
*
58340680 GCCTCATCTTCTCT
1 GCCTCATCATCTCT
58340694 GC
1 GC
58340696 TAGTTCACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.43, G:0.10, T:0.37
Consensus pattern (14 bp):
GCCTCATCATCTCT
Found at i:58340883 original size:15 final size:15
Alignment explanation
Indices: 58340863--58340899 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
58340853 TGAATTAGGG
58340863 TTTTTTTTT-CCT-T
1 TTTTTTTTTCCCTAT
58340876 TTTTTTTTCTCCCTAT
1 TTTTTTTT-TCCCTAT
58340892 TTTTTTTT
1 TTTTTTTT
58340900 GGGTTTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.38
14 1 0.05
15 3 0.14
16 9 0.43
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTTTTTCCCTAT
Found at i:58342356 original size:24 final size:22
Alignment explanation
Indices: 58342313--58342357 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
58342303 GCAAATGAAT
58342313 AGAAGAAAAAAAAGAAAGAAAA
1 AGAAGAAAAAAAAGAAAGAAAA
*
58342335 AGAACGAAGAAAAAAGAGAGAAA
1 AGAA-GAA-AAAAAAGAAAGAAA
58342358 CGCACGACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 3 0.15
24 13 0.65
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (22 bp):
AGAAGAAAAAAAAGAAAGAAAA
Found at i:58342731 original size:20 final size:20
Alignment explanation
Indices: 58342694--58342731 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
58342684 GTGAAATTAG
*
58342694 TATGAAAATATAAGATTAAA
1 TATGAAAATATAAAATTAAA
58342714 TATGAAGAAT-TAAAATTA
1 TATGAA-AATATAAAATTA
58342732 GTCTCAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (20 bp):
TATGAAAATATAAAATTAAA
Found at i:58343085 original size:25 final size:25
Alignment explanation
Indices: 58343037--58343085 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
58343027 CATAATTGAA
* * *
58343037 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
58343062 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
58343086 ATGTGGATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:58348828 original size:37 final size:31
Alignment explanation
Indices: 58348778--58348856 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
58348768 CAGTCATCGA
**
58348778 TTTAAA-TTGAATTAAATTTAATTTTCAAGTT
1 TTTAAATTTGAATTAAA-TTAATTTAAAAGTT
*
58348809 TTTAAATTTGAATTAAATTAATTTAAAATTT
1 TTTAAATTTGAATTAAATTAATTTAAAAGTT
58348840 TTTAAATTTGAATTAAA
1 TTTAAATTTGAATTAAA
58348857 ATTGAAATGT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 34 0.77
32 10 0.23
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (31 bp):
TTTAAATTTGAATTAAATTAATTTAAAAGTT
Found at i:58357818 original size:23 final size:25
Alignment explanation
Indices: 58357783--58357829 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
58357773 ATTTGAACTT
*
58357783 TGAAAAGTAAAAGT-ATTAAATTAC
1 TGAAAAGTAAAAGTAAATAAATTAC
58357807 TGAAAA-TAAAAGTAAATAAATTA
1 TGAAAAGTAAAAGTAAATAAATTA
58357830 ATTTTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.60, C:0.02, G:0.11, T:0.28
Consensus pattern (25 bp):
TGAAAAGTAAAAGTAAATAAATTAC
Found at i:58361655 original size:2 final size:2
Alignment explanation
Indices: 58361648--58361683 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
58361638 TGACCATCTT
58361648 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58361684 AAGAAAGTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:58362417 original size:15 final size:16
Alignment explanation
Indices: 58362380--58362419 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
58362370 TTTAGTTTCT
*
58362380 TTAAAATTTATAAAAA
1 TTAAAATTAATAAAAA
*
58362396 TTTAAATTAATAAAAA
1 TTAAAATTAATAAAAA
58362412 -TAAAATTA
1 TTAAAATTA
58362420 TATTTTAACC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TTAAAATTAATAAAAA
Found at i:58368051 original size:2 final size:2
Alignment explanation
Indices: 58368044--58368077 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
58368034 TTTGACCATT
58368044 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58368078 AATTCTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:58372234 original size:33 final size:34
Alignment explanation
Indices: 58372196--58372262 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
58372186 AGAATGGCAC
* * *
58372196 CAATTTTTATATGA-ATTTATT-ACTTTTTTTATT
1 CAATTTTCAAATGATATTT-TTCACTTATTTTATT
58372229 CAATTTTCAAATGATATTTTTCACTTATTTTATT
1 CAATTTTCAAATGATATTTTTCACTTATTTTATT
58372263 TGAAGATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 14 0.48
34 15 0.52
ACGTcount: A:0.28, C:0.09, G:0.03, T:0.60
Consensus pattern (34 bp):
CAATTTTCAAATGATATTTTTCACTTATTTTATT
Found at i:58392640 original size:29 final size:29
Alignment explanation
Indices: 58392602--58392659 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
58392592 TTCAATAAAA
* *
58392602 ATATAAGAAA-ATAATATTATTAATATTTT
1 ATATAAGAAATATAAAATT-TAAATATTTT
*
58392631 ATATATGAAATATAAAATTTAAATATTTT
1 ATATAAGAAATATAAAATTTAAATATTTT
58392660 TTAAGCAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (29 bp):
ATATAAGAAATATAAAATTTAAATATTTT
Found at i:58393413 original size:5 final size:5
Alignment explanation
Indices: 58393403--58393448 Score: 74
Period size: 5 Copynumber: 8.8 Consensus size: 5
58393393 GACAGCACTT
58393403 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTGC TTTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT-C -TTTTC TTTT
58393449 ACCTAATTGA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
5 33 0.85
6 2 0.05
7 4 0.10
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:58396116 original size:26 final size:25
Alignment explanation
Indices: 58396079--58396128 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
58396069 GGATTTTCAC
58396079 AATTCAAGTGCTAAAAATATTATGG
1 AATTCAAGTGCTAAAAATATTATGG
*
58396104 AATTCAAAGTGCTACAAATATTATG
1 AATTC-AAGTGCTAAAAATATTATG
58396129 AAGGTCATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.44, C:0.10, G:0.14, T:0.32
Consensus pattern (25 bp):
AATTCAAGTGCTAAAAATATTATGG
Found at i:58396713 original size:22 final size:22
Alignment explanation
Indices: 58396688--58396729 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
58396678 CTGTACAGTG
* * *
58396688 TACATGCATGCATATATATACA
1 TACATACATACATACATATACA
58396710 TACATACATACATACATATA
1 TACATACATACATACATATA
58396730 TGCAGCAAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (22 bp):
TACATACATACATACATATACA
Found at i:58398112 original size:50 final size:52
Alignment explanation
Indices: 58398031--58398129 Score: 139
Period size: 50 Copynumber: 1.9 Consensus size: 52
58398021 ACCTTAAATG
* * *
58398031 ACCCAACTGAGATACTCAAAATGATCTTGAATGGACCTAAACCCGAAATGAT
1 ACCCAACTGACATACTCAAAACGATCTTGAATGAACCTAAACCCGAAATGAT
* *
58398083 ACCCAACTGACATA-TCCAAACGATC-TGAATTAACCTAAACCCGAAAT
1 ACCCAACTGACATACTCAAAACGATCTTGAATGAACCTAAACCCGAAAT
58398130 AAAATTATCT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 20 0.48
51 9 0.21
52 13 0.31
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.20
Consensus pattern (52 bp):
ACCCAACTGACATACTCAAAACGATCTTGAATGAACCTAAACCCGAAATGAT
Found at i:58402433 original size:25 final size:26
Alignment explanation
Indices: 58402398--58402448 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
58402388 TATATATTGC
58402398 ATAATAAAT-AATTATATGTATCTAAT
1 ATAATAAATAAATTA-ATGTATCTAAT
*
58402424 ATAA-AAATAAATTAATGTATTTAAT
1 ATAATAAATAAATTAATGTATCTAAT
58402449 TCTTTAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (26 bp):
ATAATAAATAAATTAATGTATCTAAT
Found at i:58403373 original size:56 final size:56
Alignment explanation
Indices: 58403287--58403397 Score: 213
Period size: 56 Copynumber: 2.0 Consensus size: 56
58403277 ACTTGCACGG
58403287 GCAATAGGAGAGAGAGGTAGGCAGGGCCTTACCCCTAAATTGTATAGATTTATAAA
1 GCAATAGGAGAGAGAGGTAGGCAGGGCCTTACCCCTAAATTGTATAGATTTATAAA
*
58403343 GCAATAGGAGAGAGGGGTAGGCAGGGCCTTACCCCTAAATTGTATAGATTTATAA
1 GCAATAGGAGAGAGAGGTAGGCAGGGCCTTACCCCTAAATTGTATAGATTTATAA
58403398 GTTAATAAGT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.23
Consensus pattern (56 bp):
GCAATAGGAGAGAGAGGTAGGCAGGGCCTTACCCCTAAATTGTATAGATTTATAAA
Found at i:58403973 original size:16 final size:18
Alignment explanation
Indices: 58403952--58403988 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
58403942 TATTTAAGAG
58403952 TTCATT-AAATTTA-TTC
1 TTCATTGAAATTTAGTTC
*
58403968 TTCATTGAACTTTAGTTC
1 TTCATTGAAATTTAGTTC
58403986 TTC
1 TTC
58403989 TCATTAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 6 0.33
18 6 0.33
ACGTcount: A:0.24, C:0.16, G:0.05, T:0.54
Consensus pattern (18 bp):
TTCATTGAAATTTAGTTC
Found at i:58404748 original size:21 final size:23
Alignment explanation
Indices: 58404722--58404768 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
58404712 ACATTTAGAA
*
58404722 TTTAATCACTTT-ATT-TTTTAT
1 TTTAATCAATTTAATTATTTTAT
*
58404743 TTTAATGAATTTAATTATTTTAT
1 TTTAATCAATTTAATTATTTTAT
58404766 TTT
1 TTT
58404769 TTAGATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.45
22 3 0.14
23 9 0.41
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTAATCAATTTAATTATTTTAT
Found at i:58407517 original size:16 final size:18
Alignment explanation
Indices: 58407498--58407530 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
58407488 ATTTAAGTAT
58407498 AATAA-TATTTT-ATTTG
1 AATAATTATTTTGATTTG
58407514 AATAATTATTTTGATTT
1 AATAATTATTTTGATTT
58407531 TTAAATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (18 bp):
AATAATTATTTTGATTTG
Found at i:58409892 original size:10 final size:9
Alignment explanation
Indices: 58409877--58409905 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
58409867 AGCCAGAGAT
58409877 AAAAAAAGA
1 AAAAAAAGA
58409886 AAAAAAAGA
1 AAAAAAAGA
58409895 AAAAAAA-A
1 AAAAAAAGA
58409903 AAA
1 AAA
58409906 GGAAGAAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.20
9 16 0.80
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:58420644 original size:6 final size:6
Alignment explanation
Indices: 58420599--58420626 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
58420589 CAACGTTCAC
58420599 AGGCCG AGGCCG AGGCCG AGGCCG AGGC
1 AGGCCG AGGCCG AGGCCG AGGCCG AGGC
58420627 AGGGGTGGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.32, G:0.50, T:0.00
Consensus pattern (6 bp):
AGGCCG
Found at i:58421237 original size:2 final size:2
Alignment explanation
Indices: 58421230--58421264 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
58421220 ATAAAATAAA
*
58421230 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58421265 GCATATACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:58421924 original size:13 final size:12
Alignment explanation
Indices: 58421900--58421933 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
58421890 ATTATATTAA
58421900 ATTATT-TAAAT
1 ATTATTATAAAT
58421911 ATTATTTATAAAT
1 ATTA-TTATAAAT
58421924 ATTATTATAA
1 ATTATTATAA
58421934 TAATTTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.19
12 8 0.38
13 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
ATTATTATAAAT
Found at i:58421935 original size:24 final size:24
Alignment explanation
Indices: 58421900--58421951 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
58421890 ATTATATTAA
58421900 ATTATTTAAATATTATTT-A-TAAAT
1 ATTATTTAAATA--ATTTAATTAAAT
58421924 ATTA-TTATAATAATTTAATTAAAT
1 ATTATTTA-AATAATTTAATTAAAT
58421948 ATTA
1 ATTA
58421952 AGTACTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
22 4 0.16
23 4 0.16
24 17 0.68
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
ATTATTTAAATAATTTAATTAAAT
Found at i:58424137 original size:11 final size:11
Alignment explanation
Indices: 58424109--58424142 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
58424099 TTTTCTCTGA
58424109 TCTTCTTTATTT
1 TCTTCTTT-TTT
58424121 TC-TCTTTTTT
1 TCTTCTTTTTT
58424131 TCTTCTTTTTT
1 TCTTCTTTTTT
58424142 T
1 T
58424143 TTGCCTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.24
11 14 0.67
12 2 0.10
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (11 bp):
TCTTCTTTTTT
Found at i:58424151 original size:22 final size:22
Alignment explanation
Indices: 58424109--58424151 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
58424099 TTTTCTCTGA
*
58424109 TCTTCTTTATTTTCTCTTTTTT
1 TCTTCTTTATTTTCTCCTTTTT
*
58424131 TCTTCTTT-TTTTTTGCCTTTT
1 TCTTCTTTATTTTCT-CCTTTT
58424152 AATTTTCCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (22 bp):
TCTTCTTTATTTTCTCCTTTTT
Found at i:58424966 original size:234 final size:226
Alignment explanation
Indices: 58424478--58425028 Score: 755
Period size: 234 Copynumber: 2.4 Consensus size: 226
58424468 TGATTTTTTA
* * * * * * * * *
58424478 AATTATGTTGTTTCGTGTTGATCACTGGTTTAAACTT-GTTGTGTTCGGTGAAATTAGATGAATT
1 AATTACGTTGTTTCATGCTGATCACTGCTTTAAA-TTAGTAGTGCTAGATGAAATTAGATGACTT
* * * *
58424542 TGAGGCAGTATAATCTTTTGTTTTAATCGAATCTTGTGTTTGCATGATCATATAGTCGAGTTTTG
65 TGAGGCAATTTAATCTCTTGTTTTAATCGAATCTTGTGTTTGCATGATCATATAATCGAGTTTTG
58424607 TCAAAGTTTTCCCCCCTTATTTGATAAATTTGATGTTCTATTATTGGAAAAAAAATGATTAGGAA
130 TCAAAGTTTTCCCCCCTTATTTGATAAATTTGATGTTCTATTATTGGAAAAAAAATGATTAGGAA
58424672 AATGAAAGATGAATAATTGTAGAAAATTCTTT
195 AATGAAAGATGAATAATTGTAGAAAATTCTTT
* * *
58424704 AATTCCGCTGTTTCATGCTGATCACTGCTTTAAATTAGTAGTGCTAGATTAAATTAGATGACTTT
1 AATTACGTTGTTTCATGCTGATCACTGCTTTAAATTAGTAGTGCTAGATGAAATTAGATGACTTT
* * * *
58424769 GAGGCAATTTAATCTCTTGTTTTGATCTAATGTTGTGTTTGCATGATCGTATAATCGAGTTTTGT
66 GAGGCAATTTAATCTCTTGTTTTAATCGAATCTTGTGTTTGCATGATCATATAATCGAG---T-T
* ** *
58424834 TTGTCAATGTTCTTTTTCCCCTTATTTGATAAATTTG-TGGTTCTATTATTGGAAAACAAATTGA
127 TTGTCAAAG-T-TTTCCCCCCTTATTTGATAAATTTGAT-GTTCTATTATTGGAAAA-AAAATGA
*
58424898 TTAGGAAAATGAAAAGATTAATAATTGTAGAAAATTCTTT
188 TTAGGAAAATG-AAAGATGAATAATTGTAGAAAATTCTTT
*
58424938 AATTACGTTGTTTCATGCTGATCACTGCTTTAAATTAGTAGTGCTAGATGAAATTAGATAACTTT
1 AATTACGTTGTTTCATGCTGATCACTGCTTTAAATTAGTAGTGCTAGATGAAATTAGATGACTTT
*
58425003 GAGGCAATTTAATCTCTTATTTTAAT
66 GAGGCAATTTAATCTCTTGTTTTAAT
58425029 TGAACCCAAG
Statistics
Matches: 284, Mismatches: 31, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
225 2 0.01
226 101 0.36
229 1 0.00
230 9 0.03
231 2 0.01
232 40 0.14
233 17 0.06
234 112 0.39
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.42
Consensus pattern (226 bp):
AATTACGTTGTTTCATGCTGATCACTGCTTTAAATTAGTAGTGCTAGATGAAATTAGATGACTTT
GAGGCAATTTAATCTCTTGTTTTAATCGAATCTTGTGTTTGCATGATCATATAATCGAGTTTTGT
CAAAGTTTTCCCCCCTTATTTGATAAATTTGATGTTCTATTATTGGAAAAAAAATGATTAGGAAA
ATGAAAGATGAATAATTGTAGAAAATTCTTT
Found at i:58425159 original size:209 final size:211
Alignment explanation
Indices: 58424826--58425241 Score: 484
Period size: 209 Copynumber: 2.0 Consensus size: 211
58424816 CGTATAATCG
* * **
58424826 AGTTTTGTTTGTCAATGTTCTTTTTCCCCTTATTTGATAAATTTGTGGTTCTATTATTGGAAAAC
1 AGTTTTGTTTGTCAATGTTATTTTTCCCCTTATTTAATAAATTTGTGGTTAAATTATTGGAAAAC
* * *
58424891 AAATTGATTAGGAAAATGAAAAGATTAATAATTGTAGAAAATTCTTTAATTACGTTGTTTCATGC
66 AAATTGATCAGGAAAAAGAAAAGATGAATAATTGTAGAAAATTCTTTAATTACGTTGTTTCATG-
* *
58424956 T-GATCACTGCTTTAAATTAGTAGTGCTAGATGAAATT-AGATAACTTTGAGGCAATTTAATCTC
130 TGGATCACTGCTTTAAACTAGTAGTGCTAGATGAAATTAAG-TAACTTTGAGGCAATTTAATCTA
*
58425019 TTATTTTAATTGAACCCA
194 TTATTTTAACTGAACCCA
** * *
58425037 AGTTTTGTTTGTCAA-GTTATTTTTTTCCTTATTTAATAATTTTGCT-GTTAAATTATT-GATGA
1 AGTTTTGTTTGTCAATGTTATTTTTCCCCTTATTTAATAAATTTG-TGGTTAAATTATTGGA-AA
* * * * * * * *
58425099 A-AAATTTATCAGTAAAAAGAGAAGATGAATAATTGTTGAAATTTTTTTAGTTATGTTGTTTCAT
64 ACAAATTGATCAGGAAAAAGAAAAGATGAATAATTGTAGAAAATTCTTTAATTACGTTGTTTCAT
* * ** * **
58425163 GTGGATCACTGCTTTAAACTCGTAGTGTTTTATGAAATTAAGTGACTTTGAGGTGATTTAATCTA
129 GTGGATCACTGCTTTAAACTAGTAGTGCTAGATGAAATTAAGTAACTTTGAGGCAATTTAATCTA
*
58425228 TTGTTTTAACTGAA
194 TTATTTTAACTGAA
58425242 TCTTGTGTTT
Statistics
Matches: 171, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
208 1 0.01
209 117 0.68
210 37 0.22
211 16 0.09
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (211 bp):
AGTTTTGTTTGTCAATGTTATTTTTCCCCTTATTTAATAAATTTGTGGTTAAATTATTGGAAAAC
AAATTGATCAGGAAAAAGAAAAGATGAATAATTGTAGAAAATTCTTTAATTACGTTGTTTCATGT
GGATCACTGCTTTAAACTAGTAGTGCTAGATGAAATTAAGTAACTTTGAGGCAATTTAATCTATT
ATTTTAACTGAACCCA
Found at i:58425464 original size:230 final size:232
Alignment explanation
Indices: 58425035--58425507 Score: 604
Period size: 230 Copynumber: 2.0 Consensus size: 232
58425025 TAATTGAACC
* * *
58425035 CAAGTTTTGTTTGTCAAGTTATTTTTTTCCTTATTTAATAATTTTGCTGTTAAATTATTGATGAA
1 CAAGTTTTGTTTGTAAAGTTATTTTTTTCCTTACTTAATAATTTTGATGTTAAATTATTGATGAA
* * * *
58425100 AAATTTATCAGTAAAAAGAGAAGATGAATAATTGTTGAAATTTTTTTAGTTATGTTGTTTCATGT
66 AAATTTATCAGGAAAAAGAAAAGATGAATAATTGTTGAAATTTCTTTAGTTATATTGTTTCATGT
** * * * *
58425165 GGATCACTGCTTTAAACTCGTAGTGTTTTATGAAATTAAGTGACTTTGAGGTGATTTAATCTATT
131 GGATCACTGCTTTAAACTCGTAGTGTTAGATGAAATTAAGTAACTTCGAGGTCAATTAATCTATT
* *
58425230 GTTTTAA-CTGAATCTTGTGTTTGCATGATCAAATAAT
196 GTTTTAATCT-AATCATCTGTTTGCATGATCAAATAAT
* * *
58425267 CAAGTTTTGTTTGTAAAGTT-TTTTTTT-TTTGCTTGATAATTTTGATGTTAAATTATTGATG-A
1 CAAGTTTTGTTTGTAAAGTTATTTTTTTCCTTACTTAATAATTTTGATGTTAAATTATTGATGAA
* *
58425329 AAATTTGATCAGGAAAAAGAAAAGATTAATAGTTGTTGAGAA-TTCTTT-GTTATATTGTTTCAT
66 AAATTT-ATCAGGAAAAAGAAAAGATGAATAATTGTTGA-AATTTCTTTAGTTATATTGTTTCAT
*
58425392 GTTGG-TCACTGCTTTAAACTTGGTAGTGTTAGATGAAATT-AGATAACTTCGAGG-CAATTACA
129 G-TGGATCACTGCTTTAAAC-TCGTAGTGTTAGATGAAATTAAG-TAACTTCGAGGTCAATTA-A
* *
58425454 TCTCTTGTTTTAATCTAATCATCTGTTTGCATGATCATATAAT
190 TCTATTGTTTTAATCTAATCATCTGTTTGCATGATCAAATAAT
58425497 CAAGTTCTTGT
1 CAAGTT-TTGT
58425508 CTGCCAAGTT
Statistics
Matches: 210, Mismatches: 23, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
229 42 0.20
230 134 0.64
231 15 0.07
232 19 0.09
ACGTcount: A:0.30, C:0.08, G:0.17, T:0.45
Consensus pattern (232 bp):
CAAGTTTTGTTTGTAAAGTTATTTTTTTCCTTACTTAATAATTTTGATGTTAAATTATTGATGAA
AAATTTATCAGGAAAAAGAAAAGATGAATAATTGTTGAAATTTCTTTAGTTATATTGTTTCATGT
GGATCACTGCTTTAAACTCGTAGTGTTAGATGAAATTAAGTAACTTCGAGGTCAATTAATCTATT
GTTTTAATCTAATCATCTGTTTGCATGATCAAATAAT
Found at i:58435934 original size:35 final size:35
Alignment explanation
Indices: 58435869--58435936 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
58435859 TCTATAGCGC
* *
58435869 TAGGATCAGAGTGAACAGAAGAAGACAATATACAG
1 TAGGATCACAGTGAACAAAAGAAGACAATATACAG
* * *
58435904 TAGGATCACAGTGCACAAAATAAGAGAATATAC
1 TAGGATCACAGTGAACAAAAGAAGACAATATAC
58435937 TAACTTTACC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.49, C:0.13, G:0.22, T:0.16
Consensus pattern (35 bp):
TAGGATCACAGTGAACAAAAGAAGACAATATACAG
Found at i:58439420 original size:21 final size:19
Alignment explanation
Indices: 58439402--58439478 Score: 79
Period size: 18 Copynumber: 4.1 Consensus size: 19
58439392 CCAAAAAATT
58439402 ATTTTAAAAATTTAAAAAA
1 ATTTTAAAAATTTAAAAAA
*
58439421 AGTTT-AAAA-TTAAAAAA
1 ATTTTAAAAATTTAAAAAA
* *
58439438 AATTAAAAAGTATTTTAAAAAA
1 ATTTTAAAA--A-TTTAAAAAA
58439460 ATTTT-AAAATTTAAAAAA
1 ATTTTAAAAATTTAAAAAA
58439478 A
1 A
58439479 GTATTTTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
17 11 0.23
18 17 0.35
19 5 0.10
20 1 0.02
21 3 0.06
22 11 0.23
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
ATTTTAAAAATTTAAAAAA
Found at i:58439438 original size:39 final size:41
Alignment explanation
Indices: 58439394--58439500 Score: 125
Period size: 39 Copynumber: 2.7 Consensus size: 41
58439384 AATAAATACC
*
58439394 AAAAAATTATTTTAAAA-A-TTTAAAAAAAGTTTAAAA-TT
1 AAAAAAATATTTTAAAAGATTTTAAAAAAAGTTTAAAATTT
* *
58439432 AAAAAAA-A-TTAAAAAGTATTTTAAAAAAATTTTAAAATTT
1 AAAAAAATATTTTAAAAG-ATTTTAAAAAAAGTTTAAAATTT
58439472 AAAAAAAGTATTTTAAAAGTATTTTAAAA
1 AAAAAAA-TATTTTAAAAG-ATTTTAAAA
58439501 TTAAAAAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 9
0.82 0.06 0.13
Matches are distributed among these distances:
36 6 0.10
37 1 0.02
38 7 0.12
39 17 0.29
40 9 0.16
42 1 0.02
43 17 0.29
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (41 bp):
AAAAAAATATTTTAAAAGATTTTAAAAAAAGTTTAAAATTT
Found at i:58439457 original size:11 final size:11
Alignment explanation
Indices: 58439443--58439500 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 11
58439433 AAAAAAATTA
58439443 AAAAGTATTTT
1 AAAAGTATTTT
**
58439454 AAAAAAATTTT
1 AAAAGTATTTT
**
58439465 AAAA-T-TTAAA
1 AAAAGTATT-TT
58439475 AAAAGTATTTT
1 AAAAGTATTTT
58439486 AAAAGTATTTT
1 AAAAGTATTTT
58439497 AAAA
1 AAAA
58439501 TTAAAAAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
9 2 0.05
10 4 0.11
11 29 0.78
12 2 0.05
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:58439483 original size:32 final size:32
Alignment explanation
Indices: 58439442--58439510 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
58439432 AAAAAAAATT
*
58439442 AAAAAGTATTTTAAAAAAATTTTAAAATTTAA
1 AAAAAGTATTTTAAAAAAATTTTAAAATTAAA
**
58439474 AAAAAGTATTTTAAAAGTATTTTAAAATTAAA
1 AAAAAGTATTTTAAAAAAATTTTAAAATTAAA
58439506 AAAAA
1 AAAAA
58439511 TAAAAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (32 bp):
AAAAAGTATTTTAAAAAAATTTTAAAATTAAA
Found at i:58439484 original size:21 final size:19
Alignment explanation
Indices: 58439402--58439489 Score: 81
Period size: 21 Copynumber: 4.5 Consensus size: 19
58439392 CCAAAAAATT
58439402 ATTTTAAAAATTT-AAAAAA
1 ATTTT-AAAATTTAAAAAAA
*
58439421 AGTTTAAAA-TTAAAAAAA
1 ATTTTAAAATTTAAAAAAA
** *
58439439 ATTAAAAAGTATTTTAAAAAA
1 ATTTTAAA--ATTTAAAAAAA
58439460 ATTTTAAAATTTAAAAAAA
1 ATTTTAAAATTTAAAAAAA
58439479 GTATTTTAAAA
1 --ATTTTAAAA
58439490 GTATTTTAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
17 2 0.04
18 15 0.27
19 14 0.25
20 1 0.02
21 23 0.42
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
ATTTTAAAATTTAAAAAAA
Found at i:58444204 original size:15 final size:16
Alignment explanation
Indices: 58444184--58444218 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
58444174 GTGTATTAAA
*
58444184 ATATTTAAAA-AATAT
1 ATATTTAAAAGAAAAT
58444199 ATATTTAAAAGAAAAT
1 ATATTTAAAAGAAAAT
58444215 ATAT
1 ATAT
58444219 GACAAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (16 bp):
ATATTTAAAAGAAAAT
Found at i:58445025 original size:31 final size:30
Alignment explanation
Indices: 58444958--58445026 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
58444948 AAATTAAATC
* *
58444958 AAATTAAAATTTCACTTTTAAAATTATTCA
1 AAATTAAAATTTCACATATAAAATTATTCA
*
58444988 AAATTAAAATTT-AGATATAAAATTATATCTA
1 AAATTAAAATTTCACATATAAAATTAT-TC-A
58445019 AAATTAAA
1 AAATTAAA
58445027 TTCATATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 11 0.32
30 14 0.41
31 9 0.26
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.39
Consensus pattern (30 bp):
AAATTAAAATTTCACATATAAAATTATTCA
Found at i:58445028 original size:30 final size:29
Alignment explanation
Indices: 58444958--58445037 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 29
58444948 AAATTAAATC
** *
58444958 AAATTAAAATTTCACTTTTAAAATTATTCA
1 AAATTAAAA-TTCAGATATAAAATTATTCA
*
58444988 AAATTAAAATTTAGATATAAAATTATATCTA
1 AAATTAAAATTCAGATATAAAATTAT-TC-A
*
58445019 AAATT-AAATTCATATATAA
1 AAATTAAAATTCAGATATAA
58445038 TTTTGAGAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
29 13 0.31
30 23 0.55
31 6 0.14
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (29 bp):
AAATTAAAATTCAGATATAAAATTATTCA
Found at i:58445625 original size:14 final size:15
Alignment explanation
Indices: 58445606--58445643 Score: 60
Period size: 14 Copynumber: 2.5 Consensus size: 15
58445596 TTATTTTTGG
58445606 TAAAAAATAATTT-T
1 TAAAAAATAATTTAT
58445620 TAAAAAATAATTTAAT
1 TAAAAAATAATTT-AT
58445636 TAAAAAAT
1 TAAAAAAT
58445644 GCCCCTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 13 0.59
16 9 0.41
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAAAAATAATTTAT
Found at i:58448693 original size:218 final size:215
Alignment explanation
Indices: 58448180--58449197 Score: 880
Period size: 218 Copynumber: 4.7 Consensus size: 215
58448170 TGGGTGCTTA
* * * *
58448180 TATATATCATTGTTTTGAGTGATGTAATT-TGTAAAGAATCTATGCTTTTTAGAGGCTTATGATG
1 TATATAGCTTTGTTTTGAGTGATGTAATTAT-TAATGAATCTACGC-TTTTAGAGGCTTATGATG
* * **
58448244 ATTAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGACAACAAAAACTACAAATCTGAGGCC
64 ATTAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAAAATAAAAGTTACAAATCTGAGGCC
* *** * * *
58448309 -CAAGTCAATGGTCGTAACTTAAAAACTTATTTTTTGCTGGTGGACCAACCAATTTCATTTTCTC
129 TAAAGTTGCTGGTCATAACTT-AAAACTTA-TTTGTGATGGT-GACCAACCAATTTCATTTTCTC
* * * *
58448373 CT-TA-T-ATCATGCTTGTACTCTG
191 CTACATTAAACATGCATGTAGTCTG
* * * ** *
58448395 TGTATTGCTTTGTTTTGAGTGATGTAATTAGTGAA-GAGCCTATGCTTTTAGAGGCTTATGATGA
1 TATATAGCTTTGTTTTGAGTGATGTAATTA-TTAATGAATCTACGCTTTTAGAGGCTTATGATGA
* * *
58448459 TTAAGAATTGCCTACATTGTCGGACCTTTAGTCTGATGAAAATAGAAA-TTGCAAATCTGAGGCC
65 TTAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAAAATA-AAAGTTACAAATCTGAGGCC
* * * *
58448523 TAAAGCTGCCGGTCATAACATAAAACTTATTTGTGATGGTGAACGAACCAATTTCATTTTCTCCC
129 TAAAGTTGCTGGTCATAACTTAAAACTTATTTGTGATGGTG-ACCAACCAATTTCATTTTCT-CC
58448588 TACATTAAAGCATGCATGTAGTCTG
192 TACATTAAA-CATGCATGTAGTCTG
*
58448613 TATATAGCTTTGTTTTGAGTGATGTAATTATTAATTAATCTACGCTTTTAGAGGCTTATGATGAT
1 TATATAGCTTTGTTTTGAGTGATGTAATTATTAATGAATCTACGCTTTTAGAGGCTTATGATGAT
* * *
58448678 TAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAGATTAAAACTTACAAATCTGAGGCCTA
66 TAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAAAATAAAAGTTACAAATCTGAGGCCTA
** * **** * * ** * *
58448743 AAGTTTTTGGTC--AAGTTATTTGTGATGGTGGTGGTCATGCTTGTTGGGCATGGACC-A-TCCG
131 AAGTTGCTGGTCATAACTTAAAACTTAT--T--T-GTGATG---G-TGACCA---ACCAATTTCA
** *
58448804 TTTTCTCCCTATGTTAAAACATGCGTGTAGTCTG
184 TTTTCT-CCTACATT-AAACATGCATGTAGTCTG
* * * * * *
58448838 TATTTGGCTTTGTTTTGAGTGATGTAACTATTAATGAATCTACAGATTTAAGAGGCTCATGATGA
1 TATATAGCTTTGTTTTGAGTGATGTAATTATTAATGAATCTAC-GCTTTTAGAGGCTTATGATGA
*
58448903 TTAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAAATTAAAAGTTACAAATCTGAGGCCT
65 TTAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAAAATAAAAGTTACAAATCTGAGGCCT
** * *
58448968 AAAGTTGCTGGTTGTAACTTAAAAC----------TCG-GACCAGCCAATTTCATTTTCTCCTA-
130 AAAGTTGCTGGTCATAACTTAAAACTTATTTGTGATGGTGACCAACCAATTTCATTTTCTCCTAC
58449021 ATGGTAAA-A--CA--T-G-CTG
195 AT--TAAACATGCATGTAGTCTG
** * *
58449037 TATATAGCTTTGTTTCCAGTGA--TAATTCTTAATGAATCTACTCTTTTAGAGGCTTATGATGAT
1 TATATAGCTTTGTTTTGAGTGATGTAATTATTAATGAATCTACGCTTTTAGAGGCTTATGATGAT
* * **
58449100 TAAGAATTGCCTACATTGTCAGATCTGT--GCTCTGATGACAATAAAAGAAACAAAATCTGAGGC
66 TAAGAATTGCCTACATTGTCAGACCT-TCAG-TCTGATGAAAATAAAAGTTAC-AAATCTGAGGC
58449163 CTAAAGTTGCTGGTCATAACTTAAAAACTTATTTG
128 CTAAAGTTGCTGGTCATAACTT-AAAACTTATTTG
58449198 CAACGGACAT
Statistics
Matches: 658, Mismatches: 102, Indels: 96
0.77 0.12 0.11
Matches are distributed among these distances:
195 1 0.00
196 60 0.09
197 49 0.07
198 5 0.01
199 21 0.03
200 1 0.00
201 1 0.00
203 1 0.00
205 4 0.01
206 8 0.01
207 9 0.01
208 3 0.00
210 1 0.00
212 1 0.00
213 29 0.04
214 84 0.13
215 49 0.07
216 10 0.02
217 8 0.01
218 132 0.20
220 1 0.00
221 5 0.01
224 2 0.00
225 70 0.11
226 95 0.14
227 3 0.00
228 5 0.01
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (215 bp):
TATATAGCTTTGTTTTGAGTGATGTAATTATTAATGAATCTACGCTTTTAGAGGCTTATGATGAT
TAAGAATTGCCTACATTGTCAGACCTTCAGTCTGATGAAAATAAAAGTTACAAATCTGAGGCCTA
AAGTTGCTGGTCATAACTTAAAACTTATTTGTGATGGTGACCAACCAATTTCATTTTCTCCTACA
TTAAACATGCATGTAGTCTG
Found at i:58474803 original size:29 final size:30
Alignment explanation
Indices: 58474756--58474815 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
58474746 ATTTGTTTTT
* *
58474756 TTTAATAGTATAGGGACTAAATTGA-TATA
1 TTTAATAGTAAAGGAACTAAATTGATTATA
* *
58474785 TTTAATAGTAAATGAACTAATTTGATTATA
1 TTTAATAGTAAAGGAACTAAATTGATTATA
58474815 T
1 T
58474816 CTCTATAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (30 bp):
TTTAATAGTAAAGGAACTAAATTGATTATA
Found at i:58475913 original size:2 final size:2
Alignment explanation
Indices: 58475906--58475956 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
58475896 AATGATATTA
58475906 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58475948 AT AT AT AT A
1 AT AT AT AT A
58475957 CTATTTCTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:58476221 original size:19 final size:19
Alignment explanation
Indices: 58476197--58476239 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
58476187 TGTGAAGTTT
58476197 ATTGATGAATA-TTTATATA
1 ATTGATGAATACTTT-TATA
*
58476216 ATTGATTAATACTTTTATA
1 ATTGATGAATACTTTTATA
*
58476235 TTTGA
1 ATTGA
58476240 AACTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.51
Consensus pattern (19 bp):
ATTGATGAATACTTTTATA
Found at i:58485197 original size:48 final size:50
Alignment explanation
Indices: 58485105--58485202 Score: 128
Period size: 54 Copynumber: 1.9 Consensus size: 50
58485095 ATGACAACTG
* *
58485105 TACTTTGCCAAGTTTCTAAGTTTGGTATTTGTTCTTACTTTCATGACTTTTATT
1 TACTTTGCCAAGTTACTAAGTTTGGTATTTG----TACTCTCATGACTTTTATT
58485159 TACTTTGCCAAGTTACTAAGTTTGGTATTTG-A-TCTCATGACTTT
1 TACTTTGCCAAGTTACTAAGTTTGGTATTTGTACTCTCATGACTTT
58485203 ACCATTTGTC
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
48 11 0.26
49 1 0.02
54 30 0.71
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.50
Consensus pattern (50 bp):
TACTTTGCCAAGTTACTAAGTTTGGTATTTGTACTCTCATGACTTTTATT
Found at i:58486170 original size:15 final size:15
Alignment explanation
Indices: 58486150--58486183 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
58486140 TTTTAGTTTC
58486150 TTAAATAAATAGATG
1 TTAAATAAATAGATG
* *
58486165 TTAAATTAATAGATT
1 TTAAATAAATAGATG
58486180 TTAA
1 TTAA
58486184 GGTTAGATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (15 bp):
TTAAATAAATAGATG
Found at i:58491092 original size:21 final size:21
Alignment explanation
Indices: 58491050--58491092 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
58491040 TCCCTTATAG
*
58491050 TCAATTTAATTTTCATTTTTT
1 TCAATTTAATTTTCATTCTTT
58491071 TCAATTTAATTTTC-TATCTTT
1 TCAATTTAATTTTCAT-TCTTT
58491092 T
1 T
58491093 GGAAGAGTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (21 bp):
TCAATTTAATTTTCATTCTTT
Found at i:58491958 original size:2 final size:2
Alignment explanation
Indices: 58491951--58491995 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
58491941 TTTTAACGTG
58491951 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58491993 TA T
1 TA T
58491996 CTAAAGTTCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:58492697 original size:5 final size:6
Alignment explanation
Indices: 58492682--58492724 Score: 50
Period size: 6 Copynumber: 6.7 Consensus size: 6
58492672 TATGCTTTCT
*
58492682 TTTTTA TTTTTA TTTTTA TTTTTA GTTGTTTTG TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA --T-TTTTA TTTTTA TTTT
58492725 GTAGGCTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 26 0.81
7 1 0.03
8 1 0.03
9 4 0.12
ACGTcount: A:0.12, C:0.00, G:0.07, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:58499605 original size:13 final size:15
Alignment explanation
Indices: 58499575--58499606 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
58499565 ATATTTCATG
58499575 CATTTCATCAATAAT
1 CATTTCATCAATAAT
58499590 CATTTCAT-AA-AAT
1 CATTTCATCAATAAT
58499603 CATT
1 CATT
58499607 ATTTCATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (15 bp):
CATTTCATCAATAAT
Found at i:58500175 original size:57 final size:57
Alignment explanation
Indices: 58500107--58500236 Score: 208
Period size: 57 Copynumber: 2.3 Consensus size: 57
58500097 CCAGTAAATA
* *
58500107 GTAATCAGTAAC-GATAGCAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCT
1 GTAA-CAGTAACAG-TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCG
*
58500165 GTAACAGTAACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCG
1 GTAACAGTAACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCG
58500222 GTAACAGTAACAGTA
1 GTAACAGTAACAGTA
58500237 TTCGACACAC
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
57 63 0.93
58 5 0.07
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (57 bp):
GTAACAGTAACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCG
Found at i:58500176 original size:6 final size:6
Alignment explanation
Indices: 58500165--58500197 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
58500155 TGCTGAATCT
58500165 GTAACA GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTA
58500198 TTCGACACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:58500237 original size:39 final size:39
Alignment explanation
Indices: 58500183--58500314 Score: 246
Period size: 39 Copynumber: 3.4 Consensus size: 39
58500173 AACAGTAACA
*
58500183 GTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCG
1 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
58500222 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
*
58500261 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCA
1 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
58500300 GTAACAGTAACAGTA
1 GTAACAGTAACAGTA
58500315 ACAGTAGTCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 91 1.00
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.19
Consensus pattern (39 bp):
GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
Found at i:58507190 original size:3 final size:3
Alignment explanation
Indices: 58507182--58507206 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
58507172 AACAATTTAC
58507182 CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT C
58507207 GTAACGCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:58521033 original size:66 final size:65
Alignment explanation
Indices: 58520927--58521082 Score: 206
Period size: 66 Copynumber: 2.4 Consensus size: 65
58520917 AGCAAATTAC
* * * * *
58520927 ACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGTGGTTCAA-AAAAGATATGAAGAACTCCAG
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCAG
58520991 CT
65 -T
*
58520993 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCAGT
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGT
* *
58521058 AGCAGCTTAAAGCAGATGCGGCAGC
1 A-CAACTTAAAGCAGATGCAGCAGC
58521083 AAGAAAAACA
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
65 2 0.03
66 74 0.93
67 4 0.05
ACGTcount: A:0.39, C:0.19, G:0.26, T:0.15
Consensus pattern (65 bp):
ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGT
Found at i:58521179 original size:21 final size:21
Alignment explanation
Indices: 58521091--58521179 Score: 106
Period size: 21 Copynumber: 4.2 Consensus size: 21
58521081 GCAAGAAAAA
* *
58521091 CAGAGGCGGCAGCGAGAGAAG
1 CAGAGGCTGCAGCGAGGGAAG
* *
58521112 TAAAGGCTGCAGCGAGGGAAG
1 CAGAGGCTGCAGCGAGGGAAG
* **
58521133 CAGACGCTATAGCGAGGGAAG
1 CAGAGGCTGCAGCGAGGGAAG
*
58521154 TAGAGGCTGCAGCGAGGGAAG
1 CAGAGGCTGCAGCGAGGGAAG
58521175 CAGAG
1 CAGAG
58521180 CAGCGTCAAA
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.33, C:0.17, G:0.44, T:0.07
Consensus pattern (21 bp):
CAGAGGCTGCAGCGAGGGAAG
Found at i:58521541 original size:44 final size:43
Alignment explanation
Indices: 58521487--58521695 Score: 231
Period size: 43 Copynumber: 4.8 Consensus size: 43
58521477 ATCTGCCAAA
* * * *
58521487 TTTAGTGGCGTTTTTTGGTAAAAGCGCCGCTAAAGATAAGGGTC
1 TTTAGCGGCG-TTTGTGGGAAAAGCGCCGCTAAAGATCAGGGTC
* * * *
58521531 TTTAGCGGCGTTTGTGGAAAAAAGAGCCACTAAAGATCATGGTC
1 TTTAGCGGCGTTTGTGG-GAAAAGCGCCGCTAAAGATCAGGGTC
* * *
58521575 TTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGATC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCAGGGTC
* *** * *
58521618 TTTAGTGGCGTTTGTGGTCGAGGCGCCGCTATAGATCAGGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCAGGGTC
58521661 TTTTA-CGGCGTTTGTGGGAAAAGCGCCGCTAAAGA
1 -TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGA
58521696 CCCTAATCTT
Statistics
Matches: 135, Mismatches: 28, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
43 84 0.62
44 51 0.38
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCAGGGTC
Found at i:58521688 original size:86 final size:87
Alignment explanation
Indices: 58521487--58521695 Score: 251
Period size: 87 Copynumber: 2.4 Consensus size: 87
58521477 ATCTGCCAAA
* * * *
58521487 TTTAGTGGCGTTTTTTGGTAAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGGAAAA
1 TTTAGCGGCG-TTTGTGGGAAAAGCGCCGCTAAAGATAAGGATCTTTAGCGGCGTTTGTGGAAAA
*
58521552 AAGAGCCACTAAAGATCATGGTC
65 AAGAGCCACTAAAGATCAGGGTC
* * * ***
58521575 TTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGATCTTTAGTGGCGTTTGTGG-TCGA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATAAGGATCTTTAGCGGCGTTTGTGGAAAAA
* * * *
58521639 GGCGCCGCTATAGATCAGGGTC
66 AGAGCCACTAAAGATCAGGGTC
58521661 TTTTA-CGGCGTTTGTGGGAAAAGCGCCGCTAAAGA
1 -TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGA
58521696 CCCTAATCTT
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
86 47 0.45
87 48 0.46
88 9 0.09
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (87 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATAAGGATCTTTAGCGGCGTTTGTGGAAAAA
AGAGCCACTAAAGATCAGGGTC
Found at i:58521706 original size:43 final size:44
Alignment explanation
Indices: 58521659--58521798 Score: 146
Period size: 43 Copynumber: 3.3 Consensus size: 44
58521649 TAGATCAGGG
* * * *
58521659 TCTTTTA-CGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCCTAA
1 TCTTTTAGCGGCGCTTGTCGCAAAAACGCCGCTAAAGACCCTAA
* *
58521702 TC-TTTAGCGGCGCTTGTCGCAAAAACGCCGTTAAAGACCCTGA
1 TCTTTTAGCGGCGCTTGTCGCAAAAACGCCGCTAAAGACCCTAA
* * * *
58521745 TC-TTTAGCGGCGAC-TCTCGAAAAAACGCCACTAAAGACCCTGA
1 TCTTTTAGCGGCG-CTTGTCGCAAAAACGCCGCTAAAGACCCTAA
58521788 TC-TTTAGCGGC
1 TCTTTTAGCGGC
58521799 ACTTCCACTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 4 0.05
43 80 0.94
44 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (44 bp):
TCTTTTAGCGGCGCTTGTCGCAAAAACGCCGCTAAAGACCCTAA
Found at i:58521731 original size:86 final size:85
Alignment explanation
Indices: 58521487--58521756 Score: 233
Period size: 86 Copynumber: 3.1 Consensus size: 85
58521477 ATCTGCCAAA
* * * * *
58521487 TTTAGTGGCGTTTTTTGGTAAAAGCGCCGCTAAAGA-TAAGGGTCTTTAGCGGCGTTTGTGGAAA
1 TTTAGCGGCG-TTTGTGGGAAAAGCGCCGCTAAAGACT-A-GATCTTTAGCGGCGTTTGTGGCAA
* * *
58521551 AAAGAGCCACTAAAGATCATGGTC
63 AAA-CGCCGCTAAAGATCAGGGTC
* * * *
58521575 TTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGATCTTTAGTGGCGTTTGTGGTC-GA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACTA-GATCTTTAGCGGCGTTTGTGG-CAAA
** *
58521639 GGCGCCGCTATAGATCAGGGTC
64 AACGCCGCTAAAGATCAGGGTC
* *
58521661 TTTTA-CGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCCTA-ATCTTTAGCGGCGCTTGTCGCAA
1 -TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGA--CTAGATCTTTAGCGGCGTTTGTGGCAA
* * ** *
58521724 AAACGCCGTTAAAGACCCTGATC
63 AAACGCCGCTAAAGATCAGGGTC
58521747 TTTAGCGGCG
1 TTTAGCGGCG
58521757 ACTCTCGAAA
Statistics
Matches: 147, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
85 5 0.03
86 82 0.56
87 48 0.33
88 12 0.08
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (85 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACTAGATCTTTAGCGGCGTTTGTGGCAAAAA
CGCCGCTAAAGATCAGGGTC
Found at i:58528928 original size:21 final size:21
Alignment explanation
Indices: 58528899--58528939 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
58528889 ATTCCAAATA
*
58528899 TTTACATATAGTAATTGCATC
1 TTTAAATATAGTAATTGCATC
58528920 TTTAAATATAGTAATTGCAT
1 TTTAAATATAGTAATTGCAT
58528940 TTGTTATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (21 bp):
TTTAAATATAGTAATTGCATC
Found at i:58530364 original size:32 final size:31
Alignment explanation
Indices: 58530301--58530366 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
58530291 CTTACTAATT
* *
58530301 ATAATAAATATCTTTTACTTAGTAATAATAA
1 ATAATAAATATATTTTACTAAGTAATAATAA
*
58530332 ATAATAAATATATATTTACTAATTAA-ATATAA
1 ATAATAAATATAT-TTTACTAAGTAATA-ATAA
58530364 ATA
1 ATA
58530367 TTACAAATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 13 0.43
32 17 0.57
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.41
Consensus pattern (31 bp):
ATAATAAATATATTTTACTAAGTAATAATAA
Found at i:58535340 original size:14 final size:14
Alignment explanation
Indices: 58535321--58535347 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
58535311 CCCAAAATGA
58535321 ACAGAGGCCCAAAT
1 ACAGAGGCCCAAAT
58535335 ACAGAGGCCCAAA
1 ACAGAGGCCCAAA
58535348 ACGAATGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.30, G:0.22, T:0.04
Consensus pattern (14 bp):
ACAGAGGCCCAAAT
Found at i:58537189 original size:23 final size:25
Alignment explanation
Indices: 58537163--58537215 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 25
58537153 ATACCTACAC
58537163 TTAC-TAATTA-TAATAAATATCTT
1 TTACTTAATTACTAATAAATATCTT
*
58537186 TTACTTATTTATCTAATAAATATCTT
1 TTACTTAATTA-CTAATAAATATCTT
58537212 TTAC
1 TTAC
58537216 ACAGTAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 4 0.15
24 5 0.19
26 17 0.65
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (25 bp):
TTACTTAATTACTAATAAATATCTT
Found at i:58539461 original size:19 final size:18
Alignment explanation
Indices: 58539437--58539483 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
58539427 TCGAATCGAT
58539437 TTTTTATATATTTTTAATA
1 TTTTTATATATTTTTAA-A
* *
58539456 TTTTTAAAAATTTTTAAA
1 TTTTTATATATTTTTAAA
*
58539474 ATTTTATATA
1 TTTTTATATA
58539484 ATTGAATCGA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTATATATTTTTAAA
Found at i:58542069 original size:49 final size:49
Alignment explanation
Indices: 58542016--58542122 Score: 144
Period size: 49 Copynumber: 2.2 Consensus size: 49
58542006 CATGAAGATG
* * *
58542016 ATTTTTAAACACCGTGTTAATTGTTTATGGGC-CATCATGTTTGACGATA
1 ATTTTTAAACACCGTGTTAATTGTATAT-AGCACATCATGTTTGACAATA
* *
58542065 ATTTTTAAATACTGTGTTAATTGTATATAGCACATCATGTTTGACAATA
1 ATTTTTAAACACCGTGTTAATTGTATATAGCACATCATGTTTGACAATA
*
58542114 AATTTTAAA
1 ATTTTTAAA
58542123 GACTTTTAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
48 2 0.04
49 49 0.96
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (49 bp):
ATTTTTAAACACCGTGTTAATTGTATATAGCACATCATGTTTGACAATA
Found at i:58542915 original size:20 final size:19
Alignment explanation
Indices: 58542869--58542915 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
58542859 AGCCCTTTTT
*
58542869 CCTAATTTCTCTTAATTAAG
1 CCTAA-TTCACTTAATTAAG
58542889 -CTAAATTCACTTAATTAAAG
1 CCT-AATTCACTTAATT-AAG
58542909 CCTAATT
1 CCTAATT
58542916 AAACACACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 12 0.52
20 9 0.39
21 2 0.09
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.40
Consensus pattern (19 bp):
CCTAATTCACTTAATTAAG
Found at i:58545639 original size:20 final size:20
Alignment explanation
Indices: 58545585--58545640 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 20
58545575 AATTTAACCC
58545585 TTAATATTTATATT-TTTTTAA
1 TTAA-ATTTA-ATTCTTTTTAA
** *
58545606 TTTGATTCTTATTCTTTTTAA
1 TTAAATT-TAATTCTTTTTAA
58545627 TTAAATTTAATTCT
1 TTAAATTTAATTCT
58545641 CTATCTTTTG
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (20 bp):
TTAAATTTAATTCTTTTTAA
Found at i:58546040 original size:39 final size:39
Alignment explanation
Indices: 58545997--58546075 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
58545987 AAAAGAACAG
*
58545997 AGGCCAATTTGGCAGAAAAATGTAAATATCGAGGACTAA
1 AGGCCAATTTGACAGAAAAATGTAAATATCGAGGACTAA
*
58546036 AGGCCAATTTGATAGAAAAATGTAAATATCGAGGACTAA
1 AGGCCAATTTGACAGAAAAATGTAAATATCGAGGACTAA
58546075 A
1 A
58546076 TTTATCATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.22
Consensus pattern (39 bp):
AGGCCAATTTGACAGAAAAATGTAAATATCGAGGACTAA
Found at i:58551469 original size:2 final size:2
Alignment explanation
Indices: 58551462--58551499 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
58551452 NNNNNNNTAC
58551462 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
58551500 TTACGTTTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:58556045 original size:21 final size:21
Alignment explanation
Indices: 58556019--58556071 Score: 90
Period size: 21 Copynumber: 2.5 Consensus size: 21
58556009 CGACACATAA
58556019 GTGCCTGAAATGACACACGAG
1 GTGCCTGAAATGACACACGAG
58556040 GTGCCT-AATATGACACACGAG
1 GTGCCTGAA-ATGACACACGAG
58556061 GTGCCTGAAAT
1 GTGCCTGAAAT
58556072 ACGCAAAGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 2 0.07
21 26 0.87
22 2 0.07
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (21 bp):
GTGCCTGAAATGACACACGAG
Found at i:58556188 original size:17 final size:18
Alignment explanation
Indices: 58556156--58556189 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
58556146 TAATAGGGTA
58556156 TTTCAATTCTCAATTCAC
1 TTTCAATTCTCAATTCAC
*
58556174 TTTCATTTC-CAATTCA
1 TTTCAATTCTCAATTCA
58556190 ATATCACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTCAATTCTCAATTCAC
Found at i:58556201 original size:24 final size:22
Alignment explanation
Indices: 58556165--58556211 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
58556155 ATTTCAATTC
* *
58556165 TCAATTCACTTTCATTTCCAAT
1 TCAATTCACTTTCAATTACAAT
58556187 TCAATATCACTTTTCAATTACAAT
1 TCAAT-TCAC-TTTCAATTACAAT
58556211 T
1 T
58556212 TCTCATTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 4 0.19
24 12 0.57
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (22 bp):
TCAATTCACTTTCAATTACAAT
Found at i:58556277 original size:16 final size:17
Alignment explanation
Indices: 58556251--58556284 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
58556241 GTACATACAC
58556251 ATTCATCATTCAATTCA
1 ATTCATCATTCAATTCA
*
58556268 ATTC-TCATTCATTTCA
1 ATTCATCATTCAATTCA
58556284 A
1 A
58556285 AATCAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTCATCATTCAATTCA
Found at i:58556973 original size:17 final size:18
Alignment explanation
Indices: 58556945--58556978 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
58556935 AATTTCTATT
58556945 CAATTTATATCCTAATTC
1 CAATTTATATCCTAATTC
58556963 CAATTTA-ATCCTAATT
1 CAATTTATATCCTAATT
58556979 AACTCATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44
Consensus pattern (18 bp):
CAATTTATATCCTAATTC
Found at i:58557424 original size:14 final size:15
Alignment explanation
Indices: 58557400--58557428 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
58557390 GAATGGCTTC
58557400 TGCTATTCTTTCTTT
1 TGCTATTCTTTCTTT
58557415 TGCT-TTCTTTCTTT
1 TGCTATTCTTTCTTT
58557429 ATTTCATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.03, C:0.21, G:0.07, T:0.69
Consensus pattern (15 bp):
TGCTATTCTTTCTTT
Found at i:58557480 original size:9 final size:9
Alignment explanation
Indices: 58557468--58557492 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
58557458 TAATATTAGT
58557468 TAATAATGA
1 TAATAATGA
58557477 TAATAATGA
1 TAATAATGA
58557486 TAATAAT
1 TAATAAT
58557493 AATTATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (9 bp):
TAATAATGA
Found at i:58562726 original size:27 final size:28
Alignment explanation
Indices: 58562696--58562748 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
58562686 ATTTATGTAT
* *
58562696 ATATATATATATTATA-AAATATAAAAA
1 ATATATAAATATAATAGAAATATAAAAA
58562723 ATATATAAATATAATAGAAATATAAA
1 ATATATAAATATAATAGAAATATAAA
58562749 TGTATATACG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (28 bp):
ATATATAAATATAATAGAAATATAAAAA
Found at i:58562734 original size:17 final size:18
Alignment explanation
Indices: 58562708--58562748 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 18
58562698 ATATATATAT
58562708 TATAAAATATAA-A-AAA
1 TATAAAATATAATAGAAA
58562724 TATATAAATATAATAGAAA
1 TATA-AAATATAATAGAAA
58562743 TATAAA
1 TATAAA
58562749 TGTATATACG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 4 0.18
17 8 0.36
18 3 0.14
19 7 0.32
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (18 bp):
TATAAAATATAATAGAAA
Found at i:58562755 original size:29 final size:30
Alignment explanation
Indices: 58562690--58562775 Score: 79
Period size: 27 Copynumber: 2.8 Consensus size: 30
58562680 ATATCTATTT
*
58562690 ATGTATATATATATATATTATAAAATATAA
1 ATGTATATATATATATATAATAAAATATAA
* *
58562720 A---AAATATATAAATATAATAGAAATATAA
1 ATGTATATATATATATATAATA-AAATATAA
*
58562748 ATGTATATACGTATATATGTATATAAAA
1 ATGTATATA--TATATATATA-ATAAAA
58562776 GCTAAAAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
27 15 0.35
28 9 0.21
30 1 0.02
31 4 0.09
33 11 0.26
34 3 0.07
ACGTcount: A:0.56, C:0.01, G:0.06, T:0.37
Consensus pattern (30 bp):
ATGTATATATATATATATAATAAAATATAA
Found at i:58562914 original size:3 final size:3
Alignment explanation
Indices: 58562885--58562930 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
58562875 ATATGTAAGT
* *
58562885 ATA ATT ATA ATA CTA TATA AT- ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
58562930 A
1 A
58562931 CAAAAACTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.89
4 2 0.05
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:58564482 original size:45 final size:45
Alignment explanation
Indices: 58564426--58564680 Score: 157
Period size: 45 Copynumber: 5.7 Consensus size: 45
58564416 GCCAATACAT
*
58564426 GAAGACAAGATCTACTTTTTTTGGCCTACTTCGCCACCTGTATGG
1 GAAGACAAGATCTACTTTTTTTGACCTACTTCGCCACCTGTATGG
** * * * **
58564471 GAAGACAAGATCTACCATCTTTGACCTGCTTCACGCCA-ATACAT--
1 GAAGACAAGATCTACTTTTTTTGACCTACTT--CGCCACCTGTATGG
* * * * **
58564515 GAAGACAATATCTGCTTTCTTCGGTCTACTTCGCCACCTGTATGG
1 GAAGACAAGATCTACTTTTTTTGACCTACTTCGCCACCTGTATGG
* * ** * * **
58564560 GAAGACAAGATCT-GTTTTCCTCAATCTACTTCATGCCA-ATACAT--
1 GAAGACAAGATCTACTTTT-TTTGACCTACTTC--GCCACCTGTATGG
* *
58564604 GAAGATAAGATCT-GTTTTCTTTGACCTACTTCGCCACCTGTATGG
1 GAAGACAAGATCTACTTTT-TTTGACCTACTTCGCCACCTGTATGG
** *
58564649 GAAGACAAGATCTACCATCTTTGACCTACTTC
1 GAAGACAAGATCTACTTTTTTTGACCTACTTC
58564681 ACGCCAATAC
Statistics
Matches: 157, Mismatches: 41, Indels: 24
0.71 0.18 0.11
Matches are distributed among these distances:
42 9 0.06
43 6 0.04
44 53 0.34
45 73 0.46
46 7 0.04
47 9 0.06
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (45 bp):
GAAGACAAGATCTACTTTTTTTGACCTACTTCGCCACCTGTATGG
Found at i:58564544 original size:89 final size:89
Alignment explanation
Indices: 58564401--58564714 Score: 439
Period size: 89 Copynumber: 3.5 Consensus size: 89
58564391 ATCTGCTGTA
* * * *
58564401 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTTTTTGGCCTACTTCGCCACCTG
1 TTTGACCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGGCCTACTTCGCCACCTG
58564466 TATGGGAAGACAAGATCTACCATC
66 TATGGGAAGACAAGATCTACCATC
* * *
58564490 TTTGACCTGCTTCACGCCAATACATGAAGACAATATCTGCTTTCTTCGGTCTACTTCGCCACCTG
1 TTTGACCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGGCCTACTTCGCCACCTG
****
58564555 TATGGGAAGACAAGATCTGTTTTC
66 TATGGGAAGACAAGATCTACCATC
* ** * * * * * *
58564579 CTCAATCTACTTCATGCCAATACATGAAGATAAGATCTGTTTTCTTTGACCTACTTCGCCACCTG
1 TTTGACCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGGCCTACTTCGCCACCTG
58564644 TATGGGAAGACAAGATCTACCATC
66 TATGGGAAGACAAGATCTACCATC
*
58564668 TTTGACCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTCTTC
1 TTTGACCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTC
58564715 CAACCTGCTC
Statistics
Matches: 189, Mismatches: 36, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
89 189 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (89 bp):
TTTGACCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGGCCTACTTCGCCACCTG
TATGGGAAGACAAGATCTACCATC
Found at i:58571349 original size:3 final size:3
Alignment explanation
Indices: 58571320--58571374 Score: 60
Period size: 3 Copynumber: 18.3 Consensus size: 3
58571310 ATATGTAAGT
* *
58571320 ATA ATT ATA ATA CTA TATA AT- ATA ATA ATA ATA ATA GA-A ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
58571365 ATA ATA ATA A
1 ATA ATA ATA A
58571375 CAAAAACTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
2 3 0.07
3 38 0.86
4 3 0.07
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:58574729 original size:16 final size:17
Alignment explanation
Indices: 58574710--58574746 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
58574700 TTATTCGCTT
*
58574710 TAAAAATTATA-AATTA
1 TAAAAATTATATAATAA
58574726 T-AAAATTATATAATAA
1 TAAAAATTATATAATAA
58574742 TAAAA
1 TAAAA
58574747 TTACGCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 9 0.50
16 6 0.33
17 3 0.17
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAAATTATATAATAA
Found at i:58574732 original size:15 final size:16
Alignment explanation
Indices: 58574712--58574749 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
58574702 ATTCGCTTTA
*
58574712 AAAATTATA-AATTAT
1 AAAATTATATAATAAT
58574727 AAAATTATATAATAAT
1 AAAATTATATAATAAT
58574743 AAAATTA
1 AAAATTA
58574750 CGCTTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAAATTATATAATAAT
Found at i:58574733 original size:8 final size:8
Alignment explanation
Indices: 58574712--58574749 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
58574702 ATTCGCTTTA
58574712 AAAATTAT
1 AAAATTAT
58574720 -AAATTAT
1 AAAATTAT
58574727 AAAATTAT
1 AAAATTAT
* *
58574735 ATAATAAT
1 AAAATTAT
58574743 AAAATTA
1 AAAATTA
58574750 CGCTTTTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
AAAATTAT
Found at i:58582224 original size:18 final size:18
Alignment explanation
Indices: 58582201--58582236 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
58582191 GAAGAGTGTG
58582201 CTAAGAAGCACAAAGCTA
1 CTAAGAAGCACAAAGCTA
58582219 CTAAGAAGCACAAAGCTA
1 CTAAGAAGCACAAAGCTA
58582237 TGTCATGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.22, G:0.17, T:0.11
Consensus pattern (18 bp):
CTAAGAAGCACAAAGCTA
Found at i:58587929 original size:124 final size:123
Alignment explanation
Indices: 58587716--58588326 Score: 839
Period size: 124 Copynumber: 4.9 Consensus size: 123
58587706 GGTCCGGGAC
* * * * * *
58587716 GAAATAATTTTGAGTTGACGTTTATGATCAAACAGTATAAAATCGCTTC-AAATAGGATGCTATT
1 GAAATAATTTT--TTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTCTAGA-AGGATGCTATT
* * * *
58587780 TGAGAAAAATTTGTGAAATTGCGGCCTCGTGGACGCGCTATTACTACAGTAGGTCATGGAT
63 TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTATTGCTACAGTAGGTCATGGAT
*
58587841 GAAATAATTTTTTTTAACGTTTCTGAGCAAATAGTATAAAATCTCTTCTAGAAGGATGCTATTTG
1 GAAATAA-TTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTCTAGAAGGATGCTATTTG
* * * * *
58587906 AGAAGAATTTGTGAAATCACGGCCTCATGGACGCGATATTGCTACAGTAGCTCATGGAT
65 AGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTATTGCTACAGTAGGTCATGGAT
* * *
58587965 GAAATATTTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTCTAGCACGATGCTATTTG
1 GAAATA-ATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTCTAGAAGGATGCTATTTG
* ** *
58588030 AGAAGAATTTGTAAAATCGCGCCCTCGTGGACATGCTATTGCTACAGTAGGTCATAGAT
65 AGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTATTGCTACAGTAGGTCATGGAT
*
58588089 GAAATAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATATCTTCTAGCAA-GATGCTATTTG
1 GAAATAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTCTAG-AAGGATGCTATTTG
* * *
58588153 AGAAGAATTTGTAAAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCATGGAT
65 AGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTATTGCTACAGTAGGTCATGGAT
* * *
58588212 GAAATAATTTTTTTGACGTTTCTGACCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGA
1 GAAATAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTCTAGAAGGATGCTATTTGA
* * * *
58588277 AAAGAATTTGTGAAAATCGCGCCCTCGTGGACGCGTTTTTGCTAGAGTAG
66 GAAGAATTTGTG-AAATCGCGCCCTCGTGGACGCGCTATTGCTACAGTAG
58588327 CATGTTTGGG
Statistics
Matches: 438, Mismatches: 42, Indels: 13
0.89 0.09 0.03
Matches are distributed among these distances:
122 1 0.00
123 178 0.41
124 246 0.56
125 9 0.02
126 4 0.01
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (123 bp):
GAAATAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTCTAGAAGGATGCTATTTGA
GAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTATTGCTACAGTAGGTCATGGAT
Done.