Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60982465
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 868082 characters in sequence are not A, C, G, or T
File 3 of 204
Found at i:1023227 original size:29 final size:29
Alignment explanation
Indices: 1023195--1023259 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 29
1023185 ATACTTGAGG
* * **
1023195 TTTTTTTTGTTCCAATTTGGTACCTTTTT
1 TTTTTTTTATCCCAATTAAGTACCTTTTT
1023224 TTTTTCTTTATCCCAATTAAGTACCTTTTT
1 TTTTT-TTTATCCCAATTAAGTACCTTTTT
1023254 TTTTTT
1 TTTTTT
1023260 ACTAAAGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 6 0.19
30 25 0.81
ACGTcount: A:0.14, C:0.15, G:0.06, T:0.65
Consensus pattern (29 bp):
TTTTTTTTATCCCAATTAAGTACCTTTTT
Found at i:1027472 original size:29 final size:28
Alignment explanation
Indices: 1027439--1027495 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
1027429 TTAGATTTTT
1027439 TTTAATAGTATAA-GAACTAAATTGATCCA
1 TTTAATA--ATAATGAACTAAATTGATCCA
* *
1027468 TTTAATAATAATGGACTAATTTGATCCA
1 TTTAATAATAATGAACTAAATTGATCCA
1027496 ATCCCTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 4 0.16
28 14 0.56
29 7 0.28
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (28 bp):
TTTAATAATAATGAACTAAATTGATCCA
Found at i:1037722 original size:26 final size:26
Alignment explanation
Indices: 1037668--1037722 Score: 60
Period size: 26 Copynumber: 2.1 Consensus size: 26
1037658 AGGACTAGTT
**
1037668 TTTAACAATAAAAATAAATATTTTTC
1 TTTAACAATAAAAATAAATATTTACC
1037694 TTTAACAA-AAATAAT-AATAATTTACC
1 TTTAACAATAAA-AATAAAT-ATTTACC
1037720 TTT
1 TTT
1037723 CAATCTAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (26 bp):
TTTAACAATAAAAATAAATATTTACC
Found at i:1044695 original size:25 final size:25
Alignment explanation
Indices: 1044653--1044710 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
1044643 AAGTTCTATA
*
1044653 CAGAGAGCACAAATGTGCTAATAAT
1 CAGAGAGCACAAACGTGCTAATAAT
* *
1044678 CATAGAGCACTAACGTGCTAATAAT
1 CAGAGAGCACAAACGTGCTAATAAT
1044703 CAGAGAGC
1 CAGAGAGC
1044711 GCGCTAAGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (25 bp):
CAGAGAGCACAAACGTGCTAATAAT
Found at i:1052303 original size:49 final size:48
Alignment explanation
Indices: 1052201--1052402 Score: 246
Period size: 48 Copynumber: 4.2 Consensus size: 48
1052191 TAAAAATTTT
*
1052201 AAAAAAAAATTTTGGGTGCTGGCTTGTCAATGGCCAGCACCAGTATACG
1 AAAAAAAAATTTT-GGTGCTGGCCTGTCAATGGCCAGCACCAGTATACG
*
1052250 AAAAAAAAATTTTGGTGCT-GCCTTGTCAATGGCCGGCACCAGTATACG
1 AAAAAAAAATTTTGGTGCTGGCC-TGTCAATGGCCAGCACCAGTATACG
* * * **
1052298 AAAAAAAAATTTGGGCTGTTGGCCTGTCAATGGCCGGCACCAACAATACG
1 AAAAAAAAATTTTGG-TGCTGGCCTGTCAATGGCCAGCACC-AGTATACG
** * * *
1052348 -AAAAAAAATTTAAGTGTTGGCCTGTCAATGACCAGCACCAATATACG
1 AAAAAAAAATTTTGGTGCTGGCCTGTCAATGGCCAGCACCAGTATACG
1052395 AAAAAAAA
1 AAAAAAAA
1052403 TAATTTTGAG
Statistics
Matches: 136, Mismatches: 12, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
47 8 0.06
48 74 0.54
49 45 0.33
50 9 0.07
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.22
Consensus pattern (48 bp):
AAAAAAAAATTTTGGTGCTGGCCTGTCAATGGCCAGCACCAGTATACG
Found at i:1052374 original size:97 final size:97
Alignment explanation
Indices: 1052201--1052402 Score: 257
Period size: 97 Copynumber: 2.1 Consensus size: 97
1052191 TAAAAATTTT
* ** **
1052201 AAAAAAAAATTTTGGGTGCTGGCTTGTCAATGGCCAGCACCAGTATACGAAAAAAAAATTTTGGT
1 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCAGCACCACAATACGAAAAAAAAATTTAAGT
* * *
1052266 GCTGCCTTGTCAATGGCCGGCACCAGTATACG
66 GCTGCCTTGTCAATGACCAGCACCAATATACG
* *
1052298 AAAAAAAAA-TTTGGGCTGTTGGCCTGTCAATGGCCGGCACCAACAATACG-AAAAAAAATTTAA
1 AAAAAAAAATTTTGGG-TGCTGGCCTGTCAATGGCCAGCACC-ACAATACGAAAAAAAAATTTAA
*
1052361 GTGTTGGCC-TGTCAATGACCAGCACCAATATACG
64 GTGCT-GCCTTGTCAATGACCAGCACCAATATACG
1052395 AAAAAAAA
1 AAAAAAAA
1052403 TAATTTTGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
96 6 0.07
97 76 0.84
98 9 0.10
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.22
Consensus pattern (97 bp):
AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCAGCACCACAATACGAAAAAAAAATTTAAGT
GCTGCCTTGTCAATGACCAGCACCAATATACG
Found at i:1055370 original size:33 final size:33
Alignment explanation
Indices: 1055325--1055431 Score: 133
Period size: 33 Copynumber: 3.2 Consensus size: 33
1055315 GTGATCGACG
* *
1055325 GTCGTCGTTGGTGGTTGAGGGTGAATAGCGGCA
1 GTCGTCGGTGGTGGTTGAGGGTGAACAGCGGCA
* *
1055358 GTCGTCGGTGGTGGTTAAGGGTGAACAGTGGCA
1 GTCGTCGGTGGTGGTTGAGGGTGAACAGCGGCA
* * * **
1055391 GTCGTCGGCGGTGGTTGAGAGTGAACCGCGGTG
1 GTCGTCGGTGGTGGTTGAGGGTGAACAGCGGCA
1055424 GTCGTCGG
1 GTCGTCGG
1055432 GGTTGCCTAT
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.14, C:0.15, G:0.47, T:0.24
Consensus pattern (33 bp):
GTCGTCGGTGGTGGTTGAGGGTGAACAGCGGCA
Found at i:1055608 original size:22 final size:21
Alignment explanation
Indices: 1055583--1055641 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
1055573 CAACCCTTTT
1055583 TTTCATTCAAAATTTATTTTAA
1 TTTCATT-AAAATTTATTTTAA
*** *
1055605 TTTCATTACTTTTTATTTTAG
1 TTTCATTAAAATTTATTTTAA
1055626 TTTCATTTAAAATTTA
1 TTTCA-TTAAAATTTA
1055642 AAGCTAATTT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTCATTAAAATTTATTTTAA
Found at i:1055766 original size:14 final size:13
Alignment explanation
Indices: 1055725--1055760 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
1055715 TAATTTCTTT
1055725 TTTTCATTTAATA
1 TTTTCATTTAATA
1055738 TTTT-ATTTAAATA
1 TTTTCATTT-AATA
1055751 TTTTCATTTA
1 TTTTCATTTA
1055761 TTTATTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 4 0.19
13 13 0.62
14 4 0.19
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTCATTTAATA
Found at i:1056014 original size:11 final size:11
Alignment explanation
Indices: 1055987--1056080 Score: 81
Period size: 11 Copynumber: 8.8 Consensus size: 11
1055977 CTCTTTTTTT
1055987 TTTTCATTTCA
1 TTTTCATTTCA
1055998 --TTCATTTCA
1 TTTTCATTTCA
1056007 TTTTCATTTCA
1 TTTTCATTTCA
*
1056018 TTTT-ATTT-T
1 TTTTCATTTCA
1056027 TATTTCATTTCA
1 T-TTTCATTTCA
* *
1056039 TTCTAATTTCA
1 TTTTCATTTCA
*
1056050 TTTCCATTTCCA
1 TTTTCATTT-CA
* *
1056062 TTTCCCTTTCA
1 TTTTCATTTCA
1056073 -TTTCATTT
1 TTTTCATTT
1056081 AAAAAATATA
Statistics
Matches: 67, Mismatches: 10, Indels: 13
0.74 0.11 0.14
Matches are distributed among these distances:
9 10 0.15
10 13 0.19
11 33 0.49
12 11 0.16
ACGTcount: A:0.18, C:0.20, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTCATTTCA
Found at i:1056019 original size:16 final size:16
Alignment explanation
Indices: 1055988--1056080 Score: 93
Period size: 16 Copynumber: 5.9 Consensus size: 16
1055978 TCTTTTTTTT
1055988 TTTCA-TTTCA-TTCA
1 TTTCATTTTCATTTCA
1056002 TTTCATTTTCATTTCA
1 TTTCATTTTCATTTCA
* *
1056018 TTTTATTTTTATTTCA
1 TTTCATTTTCATTTCA
* *
1056034 TTTCATTCTAATTTCA
1 TTTCATTTTCATTTCA
* *
1056050 TTTCCATTTCCATTTCCC
1 TTT-CATTTTCATTT-CA
1056068 TTTCA-TTTCATTT
1 TTTCATTTTCATTT
1056081 AAAAAATATA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
14 5 0.08
15 5 0.08
16 41 0.63
17 10 0.15
18 4 0.06
ACGTcount: A:0.18, C:0.20, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTCATTTTCATTTCA
Found at i:1056065 original size:6 final size:5
Alignment explanation
Indices: 1055988--1056080 Score: 89
Period size: 5 Copynumber: 17.6 Consensus size: 5
1055978 TCTTTTTTTT
* *
1055988 TTTCA TTTCA -TTCA TTTCA TTTTCA TTTCA TTTTA TTTTTA TTTCA TTTCA
1 TTTCA TTTCA TTTCA TTTCA -TTTCA TTTCA TTTCA -TTTCA TTTCA TTTCA
* *
1056039 TTCTAA TTTCA TTTCCA TTTCCA TTTCCC TTTCA TTTCA TTT
1 TT-TCA TTTCA TTT-CA TTT-CA TTT-CA TTTCA TTTCA TTT
1056081 AAAAAATATA
Statistics
Matches: 77, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
4 4 0.05
5 43 0.56
6 30 0.39
ACGTcount: A:0.18, C:0.20, G:0.00, T:0.61
Consensus pattern (5 bp):
TTTCA
Found at i:1056253 original size:27 final size:26
Alignment explanation
Indices: 1056170--1056249 Score: 72
Period size: 26 Copynumber: 3.0 Consensus size: 26
1056160 TCCGAATTTC
*
1056170 ATTTAAATTTTCTATTTTCAATGCAA
1 ATTTAAATTTTCTATTTTCAATTCAA
* ** * * *
1056196 TTTTATTTTTTTCTCA-TTTCATTTTAT
1 ATTTA-AATTTTCT-ATTTTCAATTCAA
1056223 ATTTAAATTTTCTATTTTCAATTCAA
1 ATTTAAATTTTCTATTTTCAATTCAA
1056249 A
1 A
1056250 ATTTTTCTCA
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
25 1 0.03
26 19 0.50
27 17 0.45
28 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.01, T:0.59
Consensus pattern (26 bp):
ATTTAAATTTTCTATTTTCAATTCAA
Found at i:1056267 original size:48 final size:50
Alignment explanation
Indices: 1056170--1056267 Score: 128
Period size: 53 Copynumber: 1.9 Consensus size: 50
1056160 TCCGAATTTC
* *
1056170 ATTTAAATTTTCTATTTTCAATGCAATTTTATTTTTTTCTCATTTCATTTTAT
1 ATTTAAATTTTCTATTTTCAATGCAA---TATATTTTTCTCATTACATTTTAT
*
1056223 ATTTAAATTTTCTATTTTCAATTCAA-A-ATTTTTCTCATTACATTT
1 ATTTAAATTTTCTATTTTCAATGCAATATATTTTTCTCATTACATTT
1056268 AAATTATCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
48 16 0.38
49 1 0.02
53 25 0.60
ACGTcount: A:0.28, C:0.12, G:0.01, T:0.59
Consensus pattern (50 bp):
ATTTAAATTTTCTATTTTCAATGCAATATATTTTTCTCATTACATTTTAT
Found at i:1059169 original size:45 final size:47
Alignment explanation
Indices: 1059097--1059266 Score: 166
Period size: 51 Copynumber: 3.6 Consensus size: 47
1059087 TTGATAAATT
* * *
1059097 TGGTGCCGGCCATTAACAAGCCTGCACC-AAATTTTTTTCGTAC-GC
1 TGGTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTCGTACTGC
* *
1059142 TGGTGCCGGCCATTGACAGGTCAGCACCCAAAAATTAATTTTTTCGT-CTAC
1 TGGTGCCGGCCATTGACAGGCCAGCA-CC-AAAA-T--TTTTTTCGTACTGC
* * * *
1059193 TGGTGCAGACCATTGACAGACCGGCACCAAAATTTTTTTCGTACTGC
1 TGGTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTCGTACTGC
** *
1059240 TGGTGCCATCCATTGACAGGCTAGCAC
1 TGGTGCCGGCCATTGACAGGCCAGCAC
1059267 TCGAATTTTT
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
45 22 0.22
46 11 0.11
47 24 0.24
48 4 0.04
49 5 0.05
50 3 0.03
51 31 0.31
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (47 bp):
TGGTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTCGTACTGC
Found at i:1061723 original size:50 final size:49
Alignment explanation
Indices: 1061620--1061945 Score: 333
Period size: 50 Copynumber: 6.6 Consensus size: 49
1061610 GGATATTACA
** * *
1061620 ATTGACAAACTAGCACCCCAAAATTTTTTTTCGTA--GACTGGTGCCGCCC
1 ATTGACAGGCTAGCA-CCCAAATTTTTTTTTCGTACTG-CTGGTGCCGACC
* * *
1061669 ATTGACAGGCTAGCACCCAAATTTTTTTTTTCGTACTGCTGGTGCTGGCG
1 ATTGACAGGCTAGCACCCAAA-TTTTTTTTTCGTACTGCTGGTGCCGACC
* * * *
1061719 ATTGACAGGCCAGCACCCCAAATTTTTTTTTCATACAGGTGGTGCCGACC
1 ATTGACAGGCTAGCA-CCCAAATTTTTTTTTCGTACTGCTGGTGCCGACC
*
1061769 ATTGACAGGCTAGCA-CCAAATTTTTTTTTC-TAACTGGTGGTGCCGACC
1 ATTGACAGGCTAGCACCCAAATTTTTTTTTCGT-ACTGCTGGTGCCGACC
* ** * * *
1061817 ATTGACAGACAGGTAG-A-GAAAATATTTTTTTCGTACTGCTGGTGTCGAAC
1 ATTGACAG---GCTAGCACCCAAATTTTTTTTTCGTACTGCTGGTGCCGACC
* *
1061867 ATTGATAGG-TCAGCACCCAAATTTTTTTTTCGTACTGGTGGTGCCGACC
1 ATTGACAGGCT-AGCACCCAAATTTTTTTTTCGTACTGCTGGTGCCGACC
*
1061916 ATTGACAGGCCAGCACCCAAATTTTTTTTT
1 ATTGACAGGCTAGCACCCAAATTTTTTTTT
1061946 AATTTTTTGT
Statistics
Matches: 233, Mismatches: 31, Indels: 26
0.80 0.11 0.09
Matches are distributed among these distances:
46 1 0.00
47 4 0.02
48 45 0.19
49 79 0.34
50 92 0.39
51 12 0.05
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.33
Consensus pattern (49 bp):
ATTGACAGGCTAGCACCCAAATTTTTTTTTCGTACTGCTGGTGCCGACC
Found at i:1061734 original size:99 final size:97
Alignment explanation
Indices: 1061631--1061945 Score: 343
Period size: 99 Copynumber: 3.2 Consensus size: 97
1061621 TTGACAAACT
*
1061631 AGCACCCCAAAATTTTTTTTCGTAGACTGGTGCCGCCCATTGACAGGCTAGCACCCAAATTTTTT
1 AGCA-CCCAAAATTTTTTTTCGTAGACTGGTGCCGACCATTGACAGGCTAGCACCCAAA-TTTTT
* * * *
1061696 TTTTCGTACTGCTGGTGCTGGCGATTGACAGGCC
64 TTTTCGTACTGGTGGTGCCGACCATTGACAGGCC
* * * *
1061730 AGCACCCCAAATTTTTTTTTCATACAGGTGGTGCCGACCATTGACAGGCTAGCA-CCAAATTTTT
1 AGCA-CCCAAAATTTTTTTTCGTAGA-CTGGTGCCGACCATTGACAGGCTAGCACCCAAATTTTT
*
1061794 TTTTC-TAACTGGTGGTGCCGACCATTGACA-GAC
64 TTTTCGT-ACTGGTGGTGCCGACCATTGACAGGCC
* *** * * *
1061827 AGGTAGAGAAAATATTTTTTTCGTACTG-CTGGTGTCGAACATTGATAGG-TCAGCACCCAAATT
1 A-GCACCCAAAAT-TTTTTTTCGTA--GACTGGTGCCGACCATTGACAGGCT-AGCACCCAAATT
1061890 TTTTTTTCGTACTGGTGGTGCCGACCATTGACAGGCC
61 TTTTTTTCGTACTGGTGGTGCCGACCATTGACAGGCC
*
1061927 AGCACCCAAATTTTTTTTT
1 AGCACCCAAAATTTTTTTT
1061946 AATTTTTTGT
Statistics
Matches: 179, Mismatches: 27, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
97 9 0.05
98 69 0.39
99 72 0.40
100 29 0.16
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (97 bp):
AGCACCCAAAATTTTTTTTCGTAGACTGGTGCCGACCATTGACAGGCTAGCACCCAAATTTTTTT
TTCGTACTGGTGGTGCCGACCATTGACAGGCC
Found at i:1061820 original size:148 final size:148
Alignment explanation
Indices: 1061658--1061945 Score: 386
Period size: 148 Copynumber: 1.9 Consensus size: 148
1061648 TTTCGTAGAC
* * * * * *
1061658 TGGTGCCGCCCATTGACAGGCTA-GCACCCAAATTTTTTTTTTCGTACTGCTGGTG-CTG-GCGA
1 TGGTGCCGACCATTGACAGAC-AGGCACACAAAATATTTTTTTCGTACTGCTGGTGTC-GAAC-A
*
1061720 TTGACAGGCCAGCACCCCAAATTTTTTTTTCATACAGGTGGTGCCGACCATTGACAGGCTAGCA-
63 TTGACAGGCCAGCA-CCCAAATTTTTTTTTCATACAGGTGGTGCCGACCATTGACAGGCCAGCAC
1061784 CCAAATTTTTTTTTCTAACTGG
127 CCAAATTTTTTTTTCTAACTGG
* * *
1061806 TGGTGCCGACCATTGACAGACAGGTAGAGAAAATATTTTTTTCGTACTGCTGGTGTCGAACATTG
1 TGGTGCCGACCATTGACAGACAGGCACACAAAATATTTTTTTCGTACTGCTGGTGTCGAACATTG
* * * *
1061871 ATAGGTCAGCACCCAAATTTTTTTTTCGTACTGGTGGTGCCGACCATTGACAGGCCAGCACCCAA
66 ACAGGCCAGCACCCAAATTTTTTTTTCATACAGGTGGTGCCGACCATTGACAGGCCAGCACCCAA
1061936 ATTTTTTTTT
131 ATTTTTTTTT
1061946 AATTTTTTGT
Statistics
Matches: 122, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
147 47 0.39
148 73 0.60
149 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.33
Consensus pattern (148 bp):
TGGTGCCGACCATTGACAGACAGGCACACAAAATATTTTTTTCGTACTGCTGGTGTCGAACATTG
ACAGGCCAGCACCCAAATTTTTTTTTCATACAGGTGGTGCCGACCATTGACAGGCCAGCACCCAA
ATTTTTTTTTCTAACTGG
Found at i:1061845 original size:98 final size:98
Alignment explanation
Indices: 1061620--1061945 Score: 313
Period size: 98 Copynumber: 3.3 Consensus size: 98
1061610 GGATATTACA
* * * * *
1061620 ATTGACAAACTAGCACCCCAAAAT-TTTTTTTCGTAGA-CTGGTGCCGCCCATTGACAGGCTAGC
1 ATTGACAGAC-AGCA-CACAAAATATTTTTTTCATACAGCTGGTGCCGACCATTGACAGGCTAGC
* * * *
1061683 ACCCAAATTTTTTTTTTCGTACTGCTGGTGCTGGCG
64 ACCCAAA-TTTTTTTTTCGTACTGGTGGTGCCGACC
* * * * *
1061719 ATTGACAGGCCAGCACCCCAAATTTTTTTTTCATACAGGTGGTGCCGACCATTGACAGGCTAGCA
1 ATTGACA-GACAGCACACAAAATATTTTTTTCATACAGCTGGTGCCGACCATTGACAGGCTAGCA
1061784 -CCAAATTTTTTTTTC-TAACTGGTGGTGCCGACC
65 CCCAAATTTTTTTTTCGT-ACTGGTGGTGCCGACC
* * * * * * * *
1061817 ATTGACAGACAGGTAGAGAAAATATTTTTTTCGTACTGCTGGTGTCGAACATTGATAGG-TCAGC
1 ATTGACAGACA-GCACACAAAATATTTTTTTCATACAGCTGGTGCCGACCATTGACAGGCT-AGC
1061881 ACCCAAATTTTTTTTTCGTACTGGTGGTGCCGACC
64 ACCCAAATTTTTTTTTCGTACTGGTGGTGCCGACC
* * *
1061916 ATTGACAGGCCAGCAC-CCAAATTTTTTTTT
1 ATTGACA-GACAGCACACAAAATATTTTTTT
1061946 AATTTTTTGT
Statistics
Matches: 188, Mismatches: 30, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
97 5 0.03
98 86 0.46
99 67 0.36
100 30 0.16
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.33
Consensus pattern (98 bp):
ATTGACAGACAGCACACAAAATATTTTTTTCATACAGCTGGTGCCGACCATTGACAGGCTAGCAC
CCAAATTTTTTTTTCGTACTGGTGGTGCCGACC
Found at i:1079093 original size:2 final size:2
Alignment explanation
Indices: 1079086--1079138 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
1079076 GACCAAAAAG
1079086 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1079128 AT AT AT AT AT A
1 AT AT AT AT AT A
1079139 ATAAAATTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1080044 original size:16 final size:17
Alignment explanation
Indices: 1080013--1080057 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
1080003 AATTTAAAAT
1080013 AATATATATAAAAATCA
1 AATATATATAAAAATCA
*
1080030 AATATA-ATCAAAATCA
1 AATATATATAAAAATCA
*
1080046 AGTAT-TATAAAA
1 AATATATATAAAA
1080058 CACAAAATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (17 bp):
AATATATATAAAAATCA
Found at i:1082615 original size:20 final size:21
Alignment explanation
Indices: 1082566--1082617 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
1082556 AAATCATTGC
1082566 AATATATGT-AAAAATAATTT
1 AATATATGTAAAAAATAATTT
* *
1082586 AA-A-ATATAAAAAATTA-TT
1 AATATATGTAAAAAATAATTT
1082604 AATATATGTAAAAA
1 AATATATGTAAAAA
1082618 CAACTTTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
18 7 0.27
19 9 0.35
20 10 0.38
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (21 bp):
AATATATGTAAAAAATAATTT
Found at i:1082616 original size:18 final size:19
Alignment explanation
Indices: 1082566--1082616 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
1082556 AAATCATTGC
1082566 AATATATGTAAAAATAATTT
1 AATATATGT-AAAATAATTT
* ** *
1082586 AAAATATAAAAAATTA-TT
1 AATATATGTAAAATAATTT
1082604 AATATATGTAAAA
1 AATATATGTAAAA
1082617 ACAACTTTTT
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
18 12 0.50
19 6 0.25
20 6 0.25
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
AATATATGTAAAATAATTT
Found at i:1082667 original size:32 final size:33
Alignment explanation
Indices: 1082630--1082715 Score: 93
Period size: 33 Copynumber: 2.6 Consensus size: 33
1082620 ACTTTTTCGA
* *
1082630 AAAATATTTT-CAGAAAATCTACCAAACAGCAG
1 AAAATATTTTACAGAAAATCAACCAAACACCAG
* * * *
1082662 AAAATATTTTACACAGATTCAATCAAACACCAG
1 AAAATATTTTACAGAAAATCAACCAAACACCAG
* *
1082695 AAAATATTTTCCAGTAAATCA
1 AAAATATTTTACAGAAAATCA
1082716 TTTTACAGAA
Statistics
Matches: 42, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
32 10 0.24
33 32 0.76
ACGTcount: A:0.49, C:0.19, G:0.07, T:0.26
Consensus pattern (33 bp):
AAAATATTTTACAGAAAATCAACCAAACACCAG
Found at i:1082713 original size:14 final size:15
Alignment explanation
Indices: 1082691--1082767 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
1082681 CAATCAAACA
1082691 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
1082705 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
1082720 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
*
1082740 CTA-AAAATCATTTT
1 CCAGAAAATCATTTT
*
1082754 ACAGAAAA-CATTTT
1 CCAGAAAATCATTTT
1082768 ACTGGCAATA
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
14 21 0.43
15 15 0.31
16 1 0.02
18 1 0.02
19 4 0.08
20 7 0.14
ACGTcount: A:0.45, C:0.14, G:0.06, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:1083564 original size:31 final size:31
Alignment explanation
Indices: 1083529--1083598 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 31
1083519 GACAAAAAAA
1083529 TTCAAACCT-TAATATAAAAACAATTGTCAAG
1 TTCAAACCTCT-ATATAAAAACAATTGTCAAG
* ** *
1083560 TTC-AACCTCCTATGTGGAAACACTTGTCAAG
1 TTCAAACCT-CTATATAAAAACAATTGTCAAG
1083591 TTCAAACC
1 TTCAAACC
1083599 CCAAATAATG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
30 5 0.16
31 22 0.69
32 5 0.16
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (31 bp):
TTCAAACCTCTATATAAAAACAATTGTCAAG
Found at i:1086174 original size:54 final size:53
Alignment explanation
Indices: 1086093--1086199 Score: 196
Period size: 54 Copynumber: 2.0 Consensus size: 53
1086083 TGGCTTCTTC
*
1086093 CTTGTTAGGCTTAACATTTTAGACTTATGTTAGGCCTGTTTTATACTTTTATA
1 CTTGTTAGGCTTAACATTTAAGACTTATGTTAGGCCTGTTTTATACTTTTATA
1086146 CTTGTTAGGCTTCAACATTTAAGACTTATGTTAGGCCTGTTTTATACTTTTATA
1 CTTGTTAGGCTT-AACATTTAAGACTTATGTTAGGCCTGTTTTATACTTTTATA
1086200 ATATGGACGG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 12 0.23
54 40 0.77
ACGTcount: A:0.23, C:0.14, G:0.15, T:0.48
Consensus pattern (53 bp):
CTTGTTAGGCTTAACATTTAAGACTTATGTTAGGCCTGTTTTATACTTTTATA
Found at i:1086987 original size:113 final size:113
Alignment explanation
Indices: 1086801--1087008 Score: 330
Period size: 113 Copynumber: 1.8 Consensus size: 113
1086791 GACGTGAGCT
* *
1086801 AGAACCCCACTAGGGCGAGACGCTCATGTCCCCTTGATGGGTGGTTGTGTGCCAATGTACGGTCG
1 AGAACCCCACCAGGGCGAGACGCTCATGTCCCCTTGATGGGTGGTTGTGTGCCAATGTACGGTCA
* *
1086866 AGGTACTCTCAATTTTGTAAACCAAGCCCTCACAAAGGGATGTGGGCG
66 AGGTACTCTCAATTCTGTAAACCAAACCCTCACAAAGGGATGTGGGCG
* *
1086914 AGAACCCCACCAGGGGCGAGATGCTCATGTCCCCTTGGTGGGTGG-TGTGTGCTC-ATGTACGGT
1 AGAACCCCACCA-GGGCGAGACGCTCATGTCCCCTTGATGGGTGGTTGTGTGC-CAATGTACGGT
1086977 CAAGGTACTCTCAATTCTGTAAACCAAACCCT
64 CAAGGTACTCTCAATTCTGTAAACCAAACCCT
1087009 TAAGGCAACT
Statistics
Matches: 87, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
113 56 0.64
114 31 0.36
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (113 bp):
AGAACCCCACCAGGGCGAGACGCTCATGTCCCCTTGATGGGTGGTTGTGTGCCAATGTACGGTCA
AGGTACTCTCAATTCTGTAAACCAAACCCTCACAAAGGGATGTGGGCG
Found at i:1088262 original size:38 final size:38
Alignment explanation
Indices: 1088162--1088263 Score: 98
Period size: 39 Copynumber: 2.7 Consensus size: 38
1088152 TGTAGATAAT
* * * * *
1088162 GTATGGATTTGAA-ATTTAGAATTTATATTAAGTTTTAG
1 GTATGAATTT-AAGATTTAGAATTTACATCAAATTTTAA
* * * *
1088200 GTTTAGAGTTTAAGGTTTAAAATTTACATCAAATTTTAA
1 GTAT-GAATTTAAGATTTAGAATTTACATCAAATTTTAA
1088239 GTATGAATTTAAGATTTAGAATTTA
1 GTATGAATTTAAGATTTAGAATTTA
1088264 GGGTTTATAT
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
38 23 0.47
39 26 0.53
ACGTcount: A:0.37, C:0.02, G:0.16, T:0.45
Consensus pattern (38 bp):
GTATGAATTTAAGATTTAGAATTTACATCAAATTTTAA
Found at i:1090048 original size:12 final size:12
Alignment explanation
Indices: 1090031--1090056 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1090021 TCTCTCCTAA
1090031 AATTTTTCATTT
1 AATTTTTCATTT
1090043 AATTTTTCATTT
1 AATTTTTCATTT
1090055 AA
1 AA
1090057 GCCCGTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (12 bp):
AATTTTTCATTT
Found at i:1097756 original size:26 final size:27
Alignment explanation
Indices: 1097726--1097783 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
1097716 CTTTAACAGG
1097726 TTCTTGCAAAGTTTG-TTTCCCCATTT
1 TTCTTGCAAAGTTTGTTTTCCCCATTT
*
1097752 TTCTTGCCAAGTTTGTTTTCCCCATTT
1 TTCTTGCAAAGTTTGTTTTCCCCATTT
1097779 TTCTT
1 TTCTT
1097784 TGTTGAATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.12, C:0.24, G:0.10, T:0.53
Consensus pattern (27 bp):
TTCTTGCAAAGTTTGTTTTCCCCATTT
Found at i:1100832 original size:28 final size:29
Alignment explanation
Indices: 1100786--1100840 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
1100776 GAATTTTAAG
* *
1100786 TTATTTTCATTATTTTAAATATAAAATAT
1 TTATTTTCATTATTATAAAAATAAAATAT
*
1100815 TTATTTTTA-TATTATAAAAATAAAAT
1 TTATTTTCATTATTATAAAAATAAAAT
1100841 TACTTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (29 bp):
TTATTTTCATTATTATAAAAATAAAATAT
Found at i:1100847 original size:29 final size:29
Alignment explanation
Indices: 1100786--1100847 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
1100776 GAATTTTAAG
* * *
1100786 TTATTTTCATTATTTTAAATATAAAATAT
1 TTATTTTCATTATTATAAAAATAAAATAC
*
1100815 TTATTTTTA-TATTATAAAAATAAAATTAC
1 TTATTTTCATTATTATAAAAATAAAA-TAC
1100844 TTAT
1 TTAT
1100848 AAATTAAAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 14 0.50
29 14 0.50
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (29 bp):
TTATTTTCATTATTATAAAAATAAAATAC
Found at i:1107173 original size:20 final size:20
Alignment explanation
Indices: 1107145--1107183 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1107135 AAGCCTATAG
1107145 TATCAATACTTGCCCCAAGA
1 TATCAATACTTGCCCCAAGA
*
1107165 TATCGATACTTGCCCCAAG
1 TATCAATACTTGCCCCAAG
1107184 GCATCAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.26
Consensus pattern (20 bp):
TATCAATACTTGCCCCAAGA
Found at i:1124161 original size:236 final size:231
Alignment explanation
Indices: 1123659--1124339 Score: 768
Period size: 236 Copynumber: 2.9 Consensus size: 231
1123649 AAATTTTCAC
* * * *
1123659 CCCCATCACGATACATAAGGAAACTAAGACATGGATCATGAAAACCAGTCATTTCTCCTAGAACC
1 CCCCAACATGATACA-AAGGAAACTAAGTCATGGATCATGAAAACCAGTTATTTCTCCTAGAA--
* * *
1123724 TTATGGAGCCAAAAGAGAAAGAAAACGGAGTAACAGTAAAGAATCTGAGCATGCCATTAAA-CGA
63 GTATGAAGCCAAAAGAGAAAGAAAACAGAGTAACAGTAAAGAATCTGAGCATGCCATTAAACCGA
* * * ** * ***
1123788 AATTACTCTCTGATAATCATGAAAATGCAGGTA-GA-C-AGGATCC-TAAT--C-ATCCCTCCAA
128 AATTACT-TCTGCTAATCAAGAAAATGCAGATAGGATCTAACATCCATGATGACTATGTATCCAA
1123846 ATCTCGAGCATAAAGCACATGTTAAAATTATTTCATGCAT
192 ATCTCGAGCATAAAGCACATGTTAAAATTATTTCATGCAT
* * * * *
1123886 CCCCAACATGATATAAAGAAAACCAAGTCATGGATCATGAAAACCAGTTATTCCTCCCAGATAGG
1 CCCCAACATGATACAAAGGAAACTAAGTCATGGATCATGAAAACCAGTTATTTCTCCTAGA-A-G
* *
1123951 TATGAAGCCAAAAGAGAAAGGAAACAGAGTAACAGTAAAGAATCCGAGCATGCCATTAAACCGAA
64 TATGAAGCCAAAAGAGAAAGAAAACAGAGTAACAGTAAAGAATCTGAGCATGCCATTAAACCGAA
*
1124016 ATTACTATCTGCTAATCAAGAAAATGCAGATAGGATCTTAATCATCCATGATGACTATGTATCCT
129 ATTACT-TCTGCTAATCAAGAAAATGCAGATAGGATC-TAA-CATCCATGATGACTATGTATCCA
* * *
1124081 AATCTCGAGCATAAAGCGCATGTTACAATTATTTCGTGCAT
191 AATCTCGAGCATAAAGCACATGTTAAAATTATTTCATGCAT
* * * * *
1124122 TCCCGACATGCTACAAAGGAAACTAAGTCATGGATCATGAAAATCAATTATTTCTCCTAGAGCAG
1 CCCCAACATGATACAAAGGAAACTAAGTCATGGATCATGAAAACCAGTTATTTCTCCTAGA--AG
* * * *
1124187 TATGAAGCCAAAAGAGAAAGAAAACACAGCAACAGTAAAGAATCTAAGTATGCCATTAAACCGAA
64 TATGAAGCCAAAAGAGAAAGAAAACAGAGTAACAGTAAAGAATCTGAGCATGCCATTAAACCGAA
* * * *
1124252 ATTAC-TCTGCTAATCAAGAAAGTGCAGGTAGATAGAATCCTAACTATCCATGACGATTATGTAT
129 ATTACTTCTGCTAATCAAGAAAATGC----AGATAGGAT-CTAAC-ATCCATGATGACTATGTAT
* *
1124316 CCGAATCTCAAGCATAAAGCACAT
188 CCAAATCTCGAGCATAAAGCACAT
1124340 CTTGCAAAAT
Statistics
Matches: 383, Mismatches: 53, Indels: 25
0.83 0.11 0.05
Matches are distributed among these distances:
226 96 0.25
227 45 0.12
228 2 0.01
229 1 0.00
231 1 0.00
232 4 0.01
233 3 0.01
234 19 0.05
235 1 0.00
236 159 0.42
237 2 0.01
238 49 0.13
239 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.23
Consensus pattern (231 bp):
CCCCAACATGATACAAAGGAAACTAAGTCATGGATCATGAAAACCAGTTATTTCTCCTAGAAGTA
TGAAGCCAAAAGAGAAAGAAAACAGAGTAACAGTAAAGAATCTGAGCATGCCATTAAACCGAAAT
TACTTCTGCTAATCAAGAAAATGCAGATAGGATCTAACATCCATGATGACTATGTATCCAAATCT
CGAGCATAAAGCACATGTTAAAATTATTTCATGCAT
Found at i:1134381 original size:12 final size:11
Alignment explanation
Indices: 1134362--1134391 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
1134352 GGTATACAAC
1134362 ATAATTATAAT
1 ATAATTATAAT
1134373 ATGAATTATAAT
1 AT-AATTATAAT
1134385 ATAATTA
1 ATAATTA
1134392 GGGTGGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (11 bp):
ATAATTATAAT
Found at i:1135471 original size:18 final size:19
Alignment explanation
Indices: 1135445--1135491 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
1135435 TTTAACCATT
*
1135445 TAAAATATTATAAA-AATA
1 TAAATTATTATAAATAATA
1135463 TAAATTATTA-AAATAATA
1 TAAATTATTATAAATAATA
1135481 -AAATTA-TATAA
1 TAAATTATTATAA
1135492 CTTAATTTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 2 0.08
17 11 0.42
18 13 0.50
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAATTATTATAAATAATA
Found at i:1135475 original size:15 final size:17
Alignment explanation
Indices: 1135451--1135488 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
1135441 CATTTAAAAT
1135451 ATTATAAAAAT-AT-AA
1 ATTATAAAAATAATAAA
*
1135466 ATTATTAAAATAATAAA
1 ATTATAAAAATAATAAA
1135483 ATTATA
1 ATTATA
1135489 TAACTTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 10 0.53
16 2 0.11
17 7 0.37
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
ATTATAAAAATAATAAA
Found at i:1140652 original size:43 final size:43
Alignment explanation
Indices: 1140530--1140693 Score: 163
Period size: 43 Copynumber: 3.9 Consensus size: 43
1140520 TAGCGTTACC
* * *
1140530 GAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAT
1 GAGATTTCGTGTAAGACCATGTCTGGGCTATTGGCATCGATAT
* * *
1140572 GAGACTTCGTGTAAGACTATGTCTAGGAC-ATTGGCATCGATAT
1 GAGATTTCGTGTAAGACCATGTCT-GGGCTATTGGCATCGATAT
* * * *
1140615 GTGATTTCGTGTAAGACCATGGCTGGGCTATTAGCATCGATAC
1 GAGATTTCGTGTAAGACCATGTCTGGGCTATTGGCATCGATAT
* * * * *
1140658 AAGATTACATGTAAGACCATATCTGGGATA-TGGCAT
1 GAGATTTCGTGTAAGACCATGTCTGGGCTATTGGCAT
1140694 TGTTACGGTA
Statistics
Matches: 98, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 29 0.30
43 69 0.70
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (43 bp):
GAGATTTCGTGTAAGACCATGTCTGGGCTATTGGCATCGATAT
Found at i:1145275 original size:24 final size:24
Alignment explanation
Indices: 1145240--1145289 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
1145230 TCGTCTATCG
1145240 ATTTAATTAAAT-AAATAATTAAAA
1 ATTTAATTAAATAAAAT-ATTAAAA
1145264 ATTT-ATTAAAATAAAATATTAAAA
1 ATTTAATT-AAATAAAATATTAAAA
1145288 AT
1 AT
1145290 CGGTTAATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 3 0.12
24 17 0.71
25 4 0.17
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
ATTTAATTAAATAAAATATTAAAA
Found at i:1145389 original size:25 final size:28
Alignment explanation
Indices: 1145365--1145420 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
1145355 AAAAAAGCCT
*
1145365 TTTTTTTATTTATCGAAATGGGCCTATTA
1 TTTTATTATTTATCGAAATGGGCC-ATTA
* *
1145394 TTTTATTATTTATCGGAATGGTCCATT
1 TTTTATTATTTATCGAAATGGGCCATT
1145421 TTCCCCTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 3 0.12
29 21 0.88
ACGTcount: A:0.23, C:0.11, G:0.14, T:0.52
Consensus pattern (28 bp):
TTTTATTATTTATCGAAATGGGCCATTA
Found at i:1145661 original size:11 final size:11
Alignment explanation
Indices: 1145639--1145687 Score: 71
Period size: 11 Copynumber: 4.4 Consensus size: 11
1145629 GACTAATCAT
1145639 CTCTCAAATTTC
1 CTCTC-AATTTC
1145651 CTCTCAATTTC
1 CTCTCAATTTC
*
1145662 CTCTCAATTTA
1 CTCTCAATTTC
*
1145673 CTCTCAATTTG
1 CTCTCAATTTC
1145684 CTCT
1 CTCT
1145688 TAAATTTCTC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
11 30 0.86
12 5 0.14
ACGTcount: A:0.20, C:0.33, G:0.02, T:0.45
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:1145676 original size:22 final size:23
Alignment explanation
Indices: 1145639--1145698 Score: 79
Period size: 22 Copynumber: 2.7 Consensus size: 23
1145629 GACTAATCAT
*
1145639 CTCTCAAATTTCCTCTCAATTTC
1 CTCTCAAATTTACTCTCAATTTC
*
1145662 CTCTC-AATTTACTCTCAATTTG
1 CTCTCAAATTTACTCTCAATTTC
*
1145684 CTCTTAAATTT-CTCT
1 CTCTCAAATTTACTCT
1145699 GAAATCTCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 23 0.70
23 10 0.30
ACGTcount: A:0.22, C:0.30, G:0.02, T:0.47
Consensus pattern (23 bp):
CTCTCAAATTTACTCTCAATTTC
Found at i:1151114 original size:14 final size:15
Alignment explanation
Indices: 1151095--1151137 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
1151085 TTGATTGCCA
1151095 GTAAAATGTTTTAC-
1 GTAAAATGTTTTACT
*
1151109 GTAAAATGATTT-CT
1 GTAAAATGTTTTACT
*
1151123 GGAAAATGTTTTACT
1 GTAAAATGTTTTACT
1151138 TTTCTGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 1 0.04
14 21 0.88
15 2 0.08
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (15 bp):
GTAAAATGTTTTACT
Found at i:1151143 original size:20 final size:20
Alignment explanation
Indices: 1151118--1151157 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
1151108 CGTAAAATGA
*
1151118 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
1151138 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
1151158 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:1152159 original size:31 final size:32
Alignment explanation
Indices: 1152099--1152163 Score: 96
Period size: 31 Copynumber: 2.0 Consensus size: 32
1152089 TGCAATCGTT
1152099 AGGGTGAAGAGAGTGAAAAGAGGAGCTGTGGAA
1 AGGGTGAAGAGAGTG-AAAGAGGAGCTGTGGAA
* *
1152132 AGGGTGAAGAGAGTG-GAGATGAGCTGTGGAA
1 AGGGTGAAGAGAGTGAAAGAGGAGCTGTGGAA
1152163 A
1 A
1152164 ATGTCTTACC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 15 0.50
33 15 0.50
ACGTcount: A:0.37, C:0.03, G:0.46, T:0.14
Consensus pattern (32 bp):
AGGGTGAAGAGAGTGAAAGAGGAGCTGTGGAA
Found at i:1155948 original size:18 final size:18
Alignment explanation
Indices: 1155927--1155967 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
1155917 TGAGCGTGAT
1155927 CGTGACCATGATAGAGAC
1 CGTGACCATGATAGAGAC
* *
1155945 CGTGATCGTGATAGAGAC
1 CGTGACCATGATAGAGAC
1155963 CGTGA
1 CGTGA
1155968 GCGTTATAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.32, T:0.20
Consensus pattern (18 bp):
CGTGACCATGATAGAGAC
Found at i:1155976 original size:18 final size:18
Alignment explanation
Indices: 1155935--1155976 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
1155925 ATCGTGACCA
*
1155935 TGATAGAGACCGTGATCG
1 TGATAGAGACCGTGAGCG
1155953 TGATAGAGACCGTGAGCG
1 TGATAGAGACCGTGAGCG
*
1155971 TTATAG
1 TGATAG
1155977 GGAGAGGGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.24
Consensus pattern (18 bp):
TGATAGAGACCGTGAGCG
Found at i:1156024 original size:24 final size:24
Alignment explanation
Indices: 1155963--1156057 Score: 64
Period size: 24 Copynumber: 4.0 Consensus size: 24
1155953 TGATAGAGAC
* * * *
1155963 CGTGAGCGTTATAGGGAGAGGGAG
1 CGTGAGCGTTATCGAGAGCGTGAG
* **
1155987 CGGGAGCGGGATCGAGAGCGTGAG
1 CGTGAGCGTTATCGAGAGCGTGAG
* * * *
1156011 CGTGAGCGTTATCGTGATCCTGAT
1 CGTGAGCGTTATCGAGAGCGTGAG
* * *
1156035 CGTGACCATTATCGAGAACGTGA
1 CGTGAGCGTTATCGAGAGCGTGA
1156058 CCGCAACCGT
Statistics
Matches: 52, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.23, C:0.17, G:0.40, T:0.20
Consensus pattern (24 bp):
CGTGAGCGTTATCGAGAGCGTGAG
Found at i:1161114 original size:4 final size:4
Alignment explanation
Indices: 1161105--1161134 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
1161095 TCCGATTCCT
1161105 AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
1161135 GCTCATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:1164401 original size:18 final size:18
Alignment explanation
Indices: 1164380--1164420 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
1164370 TGAGCGTGAT
*
1164380 CGTGACCATGATAGAGAG
1 CGTGACCATGATAGAGAC
* *
1164398 CGTGATCGTGATAGAGAC
1 CGTGACCATGATAGAGAC
1164416 CGTGA
1 CGTGA
1164421 GCGCTATAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.34, T:0.20
Consensus pattern (18 bp):
CGTGACCATGATAGAGAC
Found at i:1164429 original size:18 final size:18
Alignment explanation
Indices: 1164388--1164450 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 18
1164378 ATCGTGACCA
* *
1164388 TGATAGAGAGCGTGATCG
1 TGATAGAGACCGTGAGCG
1164406 TGATAGAGACCGTGAGCG
1 TGATAGAGACCGTGAGCG
* * *
1164424 CT-ATAGGGAGCGGGAGCG
1 -TGATAGAGACCGTGAGCG
*
1164442 TGATCGAGA
1 TGATAGAGA
1164451 GCGGGATATT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
17 1 0.03
18 34 0.94
19 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.41, T:0.17
Consensus pattern (18 bp):
TGATAGAGACCGTGAGCG
Found at i:1174725 original size:4 final size:4
Alignment explanation
Indices: 1174718--1174757 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 4
1174708 TTTCTCCTTC
*
1174718 CTTT CTTT CCTT -TTT CTTTT CTTT CTTT CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT C-TTT CTTT CTTT CTTT CTTT CTTT
1174758 TTATTTATTC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 2 0.06
4 26 0.81
5 4 0.12
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
CTTT
Found at i:1179295 original size:2 final size:2
Alignment explanation
Indices: 1179288--1179327 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1179278 CCAACTAACA
1179288 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1179328 TCCTTCGCCG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1181013 original size:2 final size:2
Alignment explanation
Indices: 1181006--1181041 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1180996 AATTGAATCA
1181006 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1181042 TGNNNNNNNN
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1183685 original size:16 final size:16
Alignment explanation
Indices: 1183664--1183700 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
1183654 TTAGATTGAA
1183664 AGCTTTGTATGAGAGG
1 AGCTTTGTATGAGAGG
1183680 AGCTTTGTATGAGAGG
1 AGCTTTGTATGAGAGG
1183696 AGCTT
1 AGCTT
1183701 CAGGGCCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.08, G:0.35, T:0.32
Consensus pattern (16 bp):
AGCTTTGTATGAGAGG
Found at i:1185349 original size:16 final size:16
Alignment explanation
Indices: 1185330--1185362 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
1185320 TTGATGTATG
*
1185330 TACATTTCTATTCCAT
1 TACATTTCTACTCCAT
1185346 TACATTTCTACTCCAT
1 TACATTTCTACTCCAT
1185362 T
1 T
1185363 TCAGTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.48
Consensus pattern (16 bp):
TACATTTCTACTCCAT
Found at i:1190353 original size:31 final size:32
Alignment explanation
Indices: 1190304--1190365 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
1190294 ACAACCCAAT
*
1190304 GACTTAAATAAAAAAACTTTTGAATAATTTACC
1 GACTTAAAT-AAAAAACTTTCGAATAATTTACC
*
1190337 GACTTAAAT-AAAAACTTTCGAATAGTTTA
1 GACTTAAATAAAAAACTTTCGAATAATTTA
1190366 GTGATGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 18 0.67
33 9 0.33
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (32 bp):
GACTTAAATAAAAAACTTTCGAATAATTTACC
Found at i:1195070 original size:20 final size:20
Alignment explanation
Indices: 1195047--1195110 Score: 69
Period size: 21 Copynumber: 3.2 Consensus size: 20
1195037 TATATTTTTT
*
1195047 AAAAAATTATAAAATT-TCAA
1 AAAAAATTAAAAAATTAT-AA
*
1195067 AAAAAACTAAAAAATATATAA
1 AAAAAATTAAAAAAT-TATAA
*
1195088 AGAAAATTAAAAAATTA-AA
1 AAAAAATTAAAAAATTATAA
1195107 AAAA
1 AAAA
1195111 TTAGATTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
19 5 0.14
20 15 0.41
21 16 0.43
22 1 0.03
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.22
Consensus pattern (20 bp):
AAAAAATTAAAAAATTATAA
Found at i:1195110 original size:9 final size:9
Alignment explanation
Indices: 1195047--1195113 Score: 55
Period size: 9 Copynumber: 7.0 Consensus size: 9
1195037 TATATTTTTT
1195047 AAAAAATTA
1 AAAAAATTA
* *
1195056 TAAAATTTCAA
1 AAAAAATT--A
*
1195067 AAAAAACTA
1 AAAAAATTA
1195076 AAAAATATATA
1 AAAAA-AT-TA
1195087 AAGAAAATT-
1 AA-AAAATTA
1195096 AAAAAATTA
1 AAAAAATTA
1195105 AAAAAATTA
1 AAAAAATTA
1195114 GATTAATAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
8 6 0.13
9 23 0.50
10 2 0.04
11 12 0.26
12 3 0.07
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (9 bp):
AAAAAATTA
Found at i:1199866 original size:17 final size:18
Alignment explanation
Indices: 1199832--1199869 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
1199822 AAATCCATTT
1199832 AAAAGAGTAAAAAGAAGA
1 AAAAGAGTAAAAAGAAGA
1199850 AAAAGAG-AAAGAA-AAGA
1 AAAAGAGTAAA-AAGAAGA
1199867 AAA
1 AAA
1199870 CCCCACAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (18 bp):
AAAAGAGTAAAAAGAAGA
Found at i:1206420 original size:28 final size:28
Alignment explanation
Indices: 1206379--1206444 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
1206369 TTAATGAAAA
1206379 AAAATTTAATAAAA-TTTGAGAG-TCTAATT
1 AAAATTT--TAAAATTTTGAGAGCT-TAATT
*
1206408 AAAACTTTTAAAATTTTGTGAGCTTAATT
1 AAAA-TTTTAAAATTTTGAGAGCTTAATT
1206437 AAAATTTT
1 AAAATTTT
1206445 CAGGAAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
28 9 0.27
29 20 0.61
30 4 0.12
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (28 bp):
AAAATTTTAAAATTTTGAGAGCTTAATT
Found at i:1214176 original size:24 final size:23
Alignment explanation
Indices: 1214121--1214184 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
1214111 GAGAAGAAAG
1214121 AAAGAAA-AAGAAAAGGAAAGGA
1 AAAGAAAGAAGAAAAGGAAAGGA
* * *
1214143 AAGGAGAAGAAGAAGAGGGAAGGAA
1 AAAGA-AAGAAGAAAAGGAAAGG-A
1214168 AAAGAAAGAAAGAAAAG
1 AAAGAAAG-AAGAAAAG
1214185 AAGTAAAGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
22 4 0.12
23 2 0.06
24 15 0.45
25 12 0.36
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (23 bp):
AAAGAAAGAAGAAAAGGAAAGGA
Found at i:1214984 original size:22 final size:21
Alignment explanation
Indices: 1214946--1214989 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
1214936 TATTAATCTT
*
1214946 ACTAACTAACAATAATAACTAA
1 ACTAACTAACAAAAATAA-TAA
1214968 ACTAAC-AACAAAAAATAATAA
1 ACTAACTAAC-AAAAATAATAA
1214989 A
1 A
1214990 AATTATACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.18
Consensus pattern (21 bp):
ACTAACTAACAAAAATAATAA
Found at i:1221791 original size:2 final size:2
Alignment explanation
Indices: 1221780--1221814 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
1221770 TGGTAGTTTA
1221780 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1221815 CCAATCGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:1222571 original size:22 final size:22
Alignment explanation
Indices: 1222543--1222585 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
1222533 TATATTGCTA
1222543 ACGTACTAAGCTCTCATGTTTC
1 ACGTACTAAGCTCTCATGTTTC
1222565 ACGTACTAAGCTCTCATGTTT
1 ACGTACTAAGCTCTCATGTTT
1222586 GAACAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (22 bp):
ACGTACTAAGCTCTCATGTTTC
Found at i:1229052 original size:19 final size:20
Alignment explanation
Indices: 1229009--1229052 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
1228999 TACAAGTGTC
* *
1229009 AATTTTTAAGGATAAAAATT
1 AATTTTTAAGCATAAAAAAT
*
1229029 TATTTTTAA-CATAAAAAAT
1 AATTTTTAAGCATAAAAAAT
1229048 AATTT
1 AATTT
1229053 ACTATTTTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (20 bp):
AATTTTTAAGCATAAAAAAT
Found at i:1253379 original size:19 final size:19
Alignment explanation
Indices: 1253352--1253394 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
1253342 ATATTTTCCG
1253352 TTTTCTCATTTATT-TAATAA
1 TTTTCTCATTT-TTCTAAT-A
1253372 TTTT-TCATTTTTCTAATA
1 TTTTCTCATTTTTCTAATA
1253390 TTTTC
1 TTTTC
1253395 AAGTATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 7 0.33
19 10 0.48
20 4 0.19
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTCTCATTTTTCTAATA
Found at i:1275806 original size:2 final size:2
Alignment explanation
Indices: 1275794--1275833 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
1275784 AAGTGGATGT
*
1275794 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1275834 GGCATAAATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:1280453 original size:16 final size:16
Alignment explanation
Indices: 1280432--1280467 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
1280422 ATATTATTCC
1280432 TAAATAATTATAATTT
1 TAAATAATTATAATTT
1280448 TAAATAATTATAATTT
1 TAAATAATTATAATTT
1280464 TAAA
1 TAAA
1280468 GCTTTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAAATAATTATAATTT
Found at i:1296743 original size:19 final size:19
Alignment explanation
Indices: 1296716--1296775 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
1296706 TTTAAATCAA
*
1296716 TAAAATTTATAAATATTAT
1 TAAATTTTATAAATATTAT
*
1296735 TAAATTTTAATAAAAATT-T
1 TAAATTTT-ATAAATATTAT
* * *
1296754 CAAATATTAAAAAT-TTAT
1 TAAATTTTATAAATATTAT
1296772 TAAA
1 TAAA
1296776 AATTAGAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
17 2 0.06
18 8 0.25
19 14 0.44
20 8 0.25
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
TAAATTTTATAAATATTAT
Found at i:1296793 original size:18 final size:18
Alignment explanation
Indices: 1296772--1296812 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
1296762 AAAAATTTAT
*
1296772 TAAAAATTAGAAAAAATA
1 TAAAAATCAGAAAAAATA
*
1296790 TAAAAATCATAAAAAATA
1 TAAAAATCAGAAAAAATA
1296808 TAAAA
1 TAAAA
1296813 TTTTGTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (18 bp):
TAAAAATCAGAAAAAATA
Found at i:1296824 original size:56 final size:55
Alignment explanation
Indices: 1296761--1296934 Score: 133
Period size: 56 Copynumber: 3.1 Consensus size: 55
1296751 TTTCAAATAT
*
1296761 TAAAAATTTATTAAAAATTAG-AAAAAATATAAAA-ATCATAAAAAATATAAAATTTTG
1 TAAAATTTTA-TAAAAA-TAGTAAAAAATATAAAATAT-AT-AAAAATATAAAATTTTG
* * * *** *
1296818 TAAAATTTTATAAAAATCGTAAAAAATATTAAATATATAGAAATATAAAAAAGTA
1 TAAAATTTTATAAAAATAGTAAAAAATATAAAATATATAAAAATATAAAATTTTG
* * *
1296873 TAAAATTTTAT-AAAGTCGTAAGAAAATTATATAAA-ATGTAAAGAA-ATATAAATTTTG
1 TAAAATTTTATAAAAATAGTAA-AAAA-TATA-AAATATATAAA-AATATA-AAATTTTG
1296930 TAAAA
1 TAAAA
1296935 AAATAATAAA
Statistics
Matches: 94, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
54 9 0.10
55 29 0.31
56 31 0.33
57 25 0.27
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (55 bp):
TAAAATTTTATAAAAATAGTAAAAAATATAAAATATATAAAAATATAAAATTTTG
Found at i:1296856 original size:27 final size:27
Alignment explanation
Indices: 1296826--1296878 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
1296816 TGTAAAATTT
* *
1296826 TATAAAAATCGTAAAAAA-TATTAAATA
1 TATAAAAAT-ATAAAAAAGTATAAAATA
*
1296853 TATAGAAATATAAAAAAGTATAAAAT
1 TATAAAAATATAAAAAAGTATAAAAT
1296879 TTTATAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (27 bp):
TATAAAAATATAAAAAAGTATAAAATA
Found at i:1296877 original size:55 final size:58
Alignment explanation
Indices: 1296783--1296924 Score: 152
Period size: 55 Copynumber: 2.5 Consensus size: 58
1296773 AAAAATTAGA
* *** *
1296783 AAAAATATA-AAAATCATAAA-AAATATAAAATTTTGTAAAATTTTATAAAAATCGTAA-
1 AAAATTATATAAAAT-ATAAAGAAATATAAAAAAGTATAAAATTTTAT-AAAATCGTAAG
* *
1296840 AAAA-TAT-T-AAATATATAGAAATATAAAAAAGTATAAAATTTTATAAAGTCGTAAG
1 AAAATTATATAAAATATAAAGAAATATAAAAAAGTATAAAATTTTATAAAATCGTAAG
*
1296895 AAAATTATATAAAATGTAAAGAAATATAAA
1 AAAATTATATAAAATATAAAGAAATATAAA
1296925 TTTTGTAAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
54 13 0.18
55 30 0.42
56 6 0.08
57 5 0.07
58 17 0.24
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.30
Consensus pattern (58 bp):
AAAATTATATAAAATATAAAGAAATATAAAAAAGTATAAAATTTTATAAAATCGTAAG
Found at i:1296909 original size:65 final size:65
Alignment explanation
Indices: 1296787--1296909 Score: 142
Period size: 65 Copynumber: 1.9 Consensus size: 65
1296777 ATTAGAAAAA
* ** *
1296787 ATATAAAAATCATAAAAAATATAAAATTTTGTAAAATTTTATAAAAATCGTAAAAAATATTAAAT
1 ATATAAAAATCATAAAAAATATAAAATTTTATAAAATCGTATAAAAATCATAAAAAATATTAAAT
* * * *
1296852 ATATAGAAAT-ATAAAAAAGTATAAAATTTTATAAAGTCGTA-AGAAAATTATATAAAAT
1 ATATAAAAATCATAAAAAA-TATAAAATTTTATAAAATCGTATA-AAAATCATAAAAAAT
1296910 GTAAAGAAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
64 9 0.19
65 39 0.81
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (65 bp):
ATATAAAAATCATAAAAAATATAAAATTTTATAAAATCGTATAAAAATCATAAAAAATATTAAAT
Found at i:1296916 original size:21 final size:21
Alignment explanation
Indices: 1296874--1296918 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1296864 AAAAAAGTAT
* *
1296874 AAAATTTTATAAAGTCGTAAG
1 AAAATTATATAAAATCGTAAG
1296895 AAAATTATATAAAAT-GTAAAG
1 AAAATTATATAAAATCGT-AAG
1296916 AAA
1 AAA
1296919 TATAAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.29
Consensus pattern (21 bp):
AAAATTATATAAAATCGTAAG
Found at i:1297471 original size:91 final size:91
Alignment explanation
Indices: 1297361--1297550 Score: 285
Period size: 91 Copynumber: 2.1 Consensus size: 91
1297351 TTTTTTTAAG
* * * *
1297361 AAGTTTGAGGGCCTTTTTGATGGATTTTGAAAGTTTAAGTGCTTAATTGAGTATAAAAAAAATGA
1 AAGTTTGAGGGCCTTTTTGATGGATTTTAAAAGTTCAAGTGCTCAATTGAGTACAAAAAAAA--A
1297426 GGGGCTTAATTGC-TT-CTTCTTTTTTT
64 GGGGCTTAATTGCTTTACTTCTTTTTTT
* *
1297452 AAGTTTGAGGGCCTTTTTGATGTATTTTAAAAGTTCAAGTGCTCAATTGAGTGCAAAAAAAAAGG
1 AAGTTTGAGGGCCTTTTTGATGGATTTTAAAAGTTCAAGTGCTCAATTGAGTACAAAAAAAAAGG
*
1297517 GGCTTAATTGCTTTATTTCTTTTTTT
66 GGCTTAATTGCTTTACTTCTTTTTTT
1297543 AAGTTTGA
1 AAGTTTGA
1297551 AGACTTTTTA
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
89 14 0.16
90 2 0.02
91 74 0.82
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.42
Consensus pattern (91 bp):
AAGTTTGAGGGCCTTTTTGATGGATTTTAAAAGTTCAAGTGCTCAATTGAGTACAAAAAAAAAGG
GGCTTAATTGCTTTACTTCTTTTTTT
Found at i:1301204 original size:20 final size:21
Alignment explanation
Indices: 1301160--1301211 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
1301150 AAATCTAAAT
1301160 TTTTTATTT-T-AATATCATA
1 TTTTTATTTCTAAATATCATA
*
1301179 -TGTTATTTCTAAATA-CATA
1 TTTTTATTTCTAAATATCATA
1301198 TTTTTA-TTCTAAAT
1 TTTTTATTTCTAAAT
1301212 TTATGATCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 7 0.25
19 13 0.46
20 8 0.29
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTTATTTCTAAATATCATA
Found at i:1309769 original size:15 final size:15
Alignment explanation
Indices: 1309749--1309778 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1309739 TTCCTTTTTT
1309749 TTTTTCCTAGCCTGC
1 TTTTTCCTAGCCTGC
1309764 TTTTTCCTAGCCTGC
1 TTTTTCCTAGCCTGC
1309779 AAAACTGTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.33, G:0.13, T:0.47
Consensus pattern (15 bp):
TTTTTCCTAGCCTGC
Found at i:1320886 original size:12 final size:12
Alignment explanation
Indices: 1320869--1320894 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1320859 CGCAAGGATC
1320869 AATGGGAAAACG
1 AATGGGAAAACG
1320881 AATGGGAAAACG
1 AATGGGAAAACG
1320893 AA
1 AA
1320895 GAAAATCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.31, T:0.08
Consensus pattern (12 bp):
AATGGGAAAACG
Found at i:1331194 original size:18 final size:19
Alignment explanation
Indices: 1331168--1331212 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
1331158 TATTTATCAA
*
1331168 TTAAA-ATTATTTTAT-TT
1 TTAAATATTATATTATCTT
*
1331185 TTAAATATTATATTGTCTT
1 TTAAATATTATATTATCTT
1331204 TTAAATATT
1 TTAAATATT
1331213 CTACATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 5 0.21
18 8 0.33
19 11 0.46
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (19 bp):
TTAAATATTATATTATCTT
Found at i:1337028 original size:30 final size:31
Alignment explanation
Indices: 1336994--1337054 Score: 106
Period size: 30 Copynumber: 2.0 Consensus size: 31
1336984 TTTAAAATAC
1336994 TTTAAAAATATTTTTTA-TTTTATTTTTAAT
1 TTTAAAAATATTTTTTATTTTTATTTTTAAT
1337024 TTTAAAAATATTTTTTATTTTTTATTTTTAA
1 TTTAAAAATATTTTTTA-TTTTTATTTTTAA
1337055 AATATTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 17 0.59
32 12 0.41
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (31 bp):
TTTAAAAATATTTTTTATTTTTATTTTTAAT
Found at i:1337065 original size:26 final size:25
Alignment explanation
Indices: 1337011--1337064 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
1337001 ATATTTTTTA
1337011 TTTTATTTTTAATTTTAAAAATATT
1 TTTTATTTTTAATTTTAAAAATATT
* *
1337036 TTTTATTTTTTATTTTTAAAATATT
1 TTTTATTTTTAATTTTAAAAATATT
1337061 TTTT
1 TTTT
1337065 TGTGTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (25 bp):
TTTTATTTTTAATTTTAAAAATATT
Found at i:1337072 original size:25 final size:25
Alignment explanation
Indices: 1337011--1337074 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
1337001 ATATTTTTTA
1337011 TTTTATT-TTTAATTTTAAAAATATT
1 TTTTATTGTTT-ATTTTAAAAATATT
* *
1337036 TTTTATTTTTTATTTTTAAAATATT
1 TTTTATTGTTTATTTTAAAAATATT
1337061 TTTT-TGTGTTTATT
1 TTTTAT-TGTTTATT
1337075 AAAAATCAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 1 0.03
25 31 0.89
26 3 0.09
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (25 bp):
TTTTATTGTTTATTTTAAAAATATT
Found at i:1340014 original size:14 final size:14
Alignment explanation
Indices: 1339978--1340027 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
1339968 ATATCCAAAC
1339978 AATAACAACAA-AA
1 AATAACAACAAGAA
* *
1339991 TAGTAGCAACAATGAA
1 -AATAACAACAA-GAA
1340007 AA-AACAACAAGAA
1 AATAACAACAAGAA
1340020 AATAACAA
1 AATAACAA
1340028 AAAAACAGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
13 5 0.17
14 21 0.72
15 1 0.03
16 2 0.07
ACGTcount: A:0.68, C:0.14, G:0.08, T:0.10
Consensus pattern (14 bp):
AATAACAACAAGAA
Found at i:1340721 original size:18 final size:17
Alignment explanation
Indices: 1340698--1340736 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 17
1340688 AAAGACTTAT
1340698 ATTTTAATTATGTGTTA
1 ATTTTAATTATGTGTTA
1340715 CATTTTAATTATGTGTTA
1 -ATTTTAATTATGTGTTA
1340733 ATTT
1 ATTT
1340737 CAATACTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (17 bp):
ATTTTAATTATGTGTTA
Found at i:1340812 original size:9 final size:9
Alignment explanation
Indices: 1340798--1340830 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
1340788 ATGTAGTGAT
1340798 TTAATTCGG
1 TTAATTCGG
1340807 TTAATTCAGG
1 TTAATTC-GG
1340817 -TAATTCGG
1 TTAATTCGG
1340825 TTAATT
1 TTAATT
1340831 TTTAACCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.09
9 18 0.82
10 2 0.09
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.45
Consensus pattern (9 bp):
TTAATTCGG
Found at i:1344509 original size:22 final size:22
Alignment explanation
Indices: 1344484--1344533 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
1344474 AACTTGGTAA
*
1344484 GTTAACAGGGTAAACTTAAGCT
1 GTTAACAGAGTAAACTTAAGCT
*
1344506 GTTAACAGAGTAAACTTCAGCT
1 GTTAACAGAGTAAACTTAAGCT
1344528 GTTAAC
1 GTTAAC
1344534 TTACCATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (22 bp):
GTTAACAGAGTAAACTTAAGCT
Found at i:1358290 original size:15 final size:15
Alignment explanation
Indices: 1358265--1358326 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 15
1358255 GAATTTTATC
1358265 AATATAAAATATAATA
1 AATA-AAAATATAATA
**
1358281 AATAAAAATATTCTA
1 AATAAAAATATAATA
*
1358296 AATAAAAATATTATA
1 AATAAAAATATAATA
*
1358311 TA-AAAAAT-TAA-A
1 AATAAAAATATAATA
1358323 AATA
1 AATA
1358327 CTTTCAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
12 2 0.05
13 3 0.08
14 6 0.15
15 24 0.62
16 4 0.10
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (15 bp):
AATAAAAATATAATA
Found at i:1360091 original size:25 final size:25
Alignment explanation
Indices: 1360063--1360111 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
1360053 AGTGGCCAAA
1360063 ACAA-TCTTAAAAAATAAAAAACAAC
1 ACAACTCTTAAAAAA-AAAAAACAAC
*
1360088 ACAAGCTGTTAAAAAAAAAAAACA
1 ACAA-CTCTTAAAAAAAAAAAACA
1360112 TGTTTTTGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 4 0.19
26 8 0.38
27 9 0.43
ACGTcount: A:0.67, C:0.14, G:0.04, T:0.14
Consensus pattern (25 bp):
ACAACTCTTAAAAAAAAAAAACAAC
Found at i:1364290 original size:15 final size:16
Alignment explanation
Indices: 1364270--1364314 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
1364260 GTTTAAATTT
1364270 ATTATAAAATTAAT-A
1 ATTATAAAATTAATAA
1364285 ATTATAAAAATATAATAA
1 ATTAT-AAAAT-TAATAA
1364303 ATT-T-AAATTAAT
1 ATTATAAAATTAAT
1364315 TAACCTATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 4 0.15
15 9 0.33
16 5 0.19
17 5 0.19
18 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATTATAAAATTAATAA
Found at i:1368020 original size:44 final size:43
Alignment explanation
Indices: 1367955--1368047 Score: 177
Period size: 44 Copynumber: 2.1 Consensus size: 43
1367945 ACCCTGTCTG
1367955 CGTGTCTTTTTTTTTTGGAAGTAGCATAATATGTTACTATCTA
1 CGTGTCTTTTTTTTTTGGAAGTAGCATAATATGTTACTATCTA
1367998 CGTGTCTTTTTTTTTTTGGAAGTAGCATAATATGTTACTATCTA
1 CGTGTC-TTTTTTTTTTGGAAGTAGCATAATATGTTACTATCTA
1368042 CGTGTC
1 CGTGTC
1368048 CTTAAGTAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 6 0.12
44 43 0.88
ACGTcount: A:0.22, C:0.13, G:0.17, T:0.48
Consensus pattern (43 bp):
CGTGTCTTTTTTTTTTGGAAGTAGCATAATATGTTACTATCTA
Found at i:1373762 original size:18 final size:17
Alignment explanation
Indices: 1373713--1373762 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
1373703 TATGCTCGAC
*
1373713 CTATATTTTAAACTAAGT
1 CTAT-TTTTAAATTAAGT
*
1373731 CTAATTTTTTAATTAAGT
1 CT-ATTTTTAAATTAAGT
1373749 CTATTTTTCAAATT
1 CTATTTTT-AAATT
1373763 TAATATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 6 0.22
18 19 0.70
19 2 0.07
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.52
Consensus pattern (17 bp):
CTATTTTTAAATTAAGT
Found at i:1387309 original size:24 final size:24
Alignment explanation
Indices: 1387252--1387310 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
1387242 AGGAGTAGAA
1387252 GATGCTCCAAAAGCAGGACTGCTT
1 GATGCTCCAAAAGCAGGACTGCTT
* **
1387276 GAAG-TGCCAAAAGCAGGTGTGCTT
1 GATGCT-CCAAAAGCAGGACTGCTT
1387300 GATGCTCCAAA
1 GATGCTCCAAA
1387311 TGTGCCTTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.03
24 27 0.93
25 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (24 bp):
GATGCTCCAAAAGCAGGACTGCTT
Found at i:1387424 original size:24 final size:24
Alignment explanation
Indices: 1387392--1387518 Score: 139
Period size: 24 Copynumber: 5.3 Consensus size: 24
1387382 TTCCAGTTGA
* *
1387392 ACCAAAGGCCGGAGTGCTGGTAGC
1 ACCAAAGGCAGGAGTGCTGGTGGC
* *
1387416 ACCAAAGGCAGG-GATGCTTGTGGA
1 ACCAAAGGCAGGAG-TGCTGGTGGC
* * *
1387440 ACCAAAGGCCGGGGTGCTGGTAGC
1 ACCAAAGGCAGGAGTGCTGGTGGC
* * *
1387464 ACCAAAGGCAGGGGTGCTTGTGGA
1 ACCAAAGGCAGGAGTGCTGGTGGC
*
1387488 ACCAAAGGCAGGAGTGCTCGTGGC
1 ACCAAAGGCAGGAGTGCTGGTGGC
1387512 ACCAAAG
1 ACCAAAG
1387519 CTACCAAATG
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
23 1 0.01
24 84 0.98
25 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.38, T:0.13
Consensus pattern (24 bp):
ACCAAAGGCAGGAGTGCTGGTGGC
Found at i:1387461 original size:48 final size:48
Alignment explanation
Indices: 1387390--1387518 Score: 213
Period size: 48 Copynumber: 2.7 Consensus size: 48
1387380 ACTTCCAGTT
1387390 GAACCAAAGGCCGGAGTGCTGGTAGCACCAAAGGCAGGGATGCTTGTG
1 GAACCAAAGGCCGGAGTGCTGGTAGCACCAAAGGCAGGGATGCTTGTG
* *
1387438 GAACCAAAGGCCGGGGTGCTGGTAGCACCAAAGGCAGGGGTGCTTGTG
1 GAACCAAAGGCCGGAGTGCTGGTAGCACCAAAGGCAGGGATGCTTGTG
* * *
1387486 GAACCAAAGGCAGGAGTGCTCGTGGCACCAAAG
1 GAACCAAAGGCCGGAGTGCTGGTAGCACCAAAG
1387519 CTACCAAATG
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.27, C:0.22, G:0.38, T:0.13
Consensus pattern (48 bp):
GAACCAAAGGCCGGAGTGCTGGTAGCACCAAAGGCAGGGATGCTTGTG
Found at i:1387660 original size:24 final size:24
Alignment explanation
Indices: 1387582--1387661 Score: 81
Period size: 24 Copynumber: 3.3 Consensus size: 24
1387572 ACTTGAAGAT
1387582 GCTCCAAAAGCAGGAGTGCTCGAA
1 GCTCCAAAAGCAGGAGTGCTCGAA
* * * *
1387606 CCCCCAAATGCAGGAGTGCTGGAA
1 GCTCCAAAAGCAGGAGTGCTCGAA
* * *
1387630 G-TGCCAAAAGCAGGTGTGCTTGAT
1 GCT-CCAAAAGCAGGAGTGCTCGAA
1387654 GCTCCAAA
1 GCTCCAAA
1387662 TGTGCCACCT
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
24 43 0.98
25 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.29, T:0.16
Consensus pattern (24 bp):
GCTCCAAAAGCAGGAGTGCTCGAA
Found at i:1387770 original size:24 final size:24
Alignment explanation
Indices: 1387743--1387952 Score: 240
Period size: 24 Copynumber: 8.8 Consensus size: 24
1387733 TTCCAGTTGA
* *
1387743 ACCAAAGGCAGGGGTGCTTGTGGC
1 ACCAAAGGCAGGGGTACTCGTGGC
* * * *
1387767 ACCAAAGGCTGGAGTACTCATGGA
1 ACCAAAGGCAGGGGTACTCGTGGC
* *
1387791 ACCAAAGGCAGGGGTACTTGTGCC
1 ACCAAAGGCAGGGGTACTCGTGGC
* *
1387815 ACCAAAAGCAGGGGCACTCGTGGC
1 ACCAAAGGCAGGGGTACTCGTGGC
* *
1387839 ACCAAAAGAAGGGGTACTCGTGGC
1 ACCAAAGGCAGGGGTACTCGTGGC
* *
1387863 ACCAAAAGCAGGGGCACTCGTGGC
1 ACCAAAGGCAGGGGTACTCGTGGC
*
1387887 ACCAAAGGCAGGGGTACTTGTGGC
1 ACCAAAGGCAGGGGTACTCGTGGC
* * *
1387911 ACCAAAAGCAGAGGTGCTCGTGGC
1 ACCAAAGGCAGGGGTACTCGTGGC
* *
1387935 ACCGAAGGCAGGAGTACT
1 ACCAAAGGCAGGGGTACT
1387953 GGAACCAAAA
Statistics
Matches: 154, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 154 1.00
ACGTcount: A:0.29, C:0.24, G:0.34, T:0.13
Consensus pattern (24 bp):
ACCAAAGGCAGGGGTACTCGTGGC
Found at i:1387917 original size:48 final size:48
Alignment explanation
Indices: 1387743--1387952 Score: 276
Period size: 48 Copynumber: 4.4 Consensus size: 48
1387733 TTCCAGTTGA
* * * * * * *
1387743 ACCAAAGGCAGGGGTGCTTGTGGCACCAAAGGCTGGAGTACTCATGGA
1 ACCAAAGGCAGGGGTACTTGTGGCACCAAAAGCAGGGGCACTCGTGGC
*
1387791 ACCAAAGGCAGGGGTACTTGTGCCACCAAAAGCAGGGGCACTCGTGGC
1 ACCAAAGGCAGGGGTACTTGTGGCACCAAAAGCAGGGGCACTCGTGGC
* * *
1387839 ACCAAAAGAAGGGGTACTCGTGGCACCAAAAGCAGGGGCACTCGTGGC
1 ACCAAAGGCAGGGGTACTTGTGGCACCAAAAGCAGGGGCACTCGTGGC
* **
1387887 ACCAAAGGCAGGGGTACTTGTGGCACCAAAAGCAGAGGTGCTCGTGGC
1 ACCAAAGGCAGGGGTACTTGTGGCACCAAAAGCAGGGGCACTCGTGGC
* *
1387935 ACCGAAGGCAGGAGTACT
1 ACCAAAGGCAGGGGTACT
1387953 GGAACCAAAA
Statistics
Matches: 142, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 142 1.00
ACGTcount: A:0.29, C:0.24, G:0.34, T:0.13
Consensus pattern (48 bp):
ACCAAAGGCAGGGGTACTTGTGGCACCAAAAGCAGGGGCACTCGTGGC
Found at i:1390258 original size:16 final size:17
Alignment explanation
Indices: 1390187--1390264 Score: 83
Period size: 16 Copynumber: 4.8 Consensus size: 17
1390177 GATTAAATAA
*
1390187 ATTTATAAATAATTATA
1 ATTTATAAATAATTATG
1390204 ATTTATAAATAATT-TG
1 ATTTATAAATAATTATG
* *
1390220 ATTT-TCAAT-TTTATCG
1 ATTTATAAATAATTAT-G
1390236 ATTTATAAATAATT-TG
1 ATTTATAAATAATTATG
*
1390252 ATCTATAAATAAT
1 ATTTATAAATAAT
1390265 CTTACATCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
14 2 0.04
15 5 0.10
16 23 0.45
17 19 0.37
18 2 0.04
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.49
Consensus pattern (17 bp):
ATTTATAAATAATTATG
Found at i:1394522 original size:2 final size:2
Alignment explanation
Indices: 1394517--1394541 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1394507 ATATCTTATT
1394517 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1394542 TTTGTTGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1399665 original size:2 final size:2
Alignment explanation
Indices: 1399658--1399688 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1399648 TGGTGGTCGG
*
1399658 TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1399689 GTTAAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:1402257 original size:15 final size:14
Alignment explanation
Indices: 1402237--1402271 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 14
1402227 TAACAGAAAA
1402237 TATTTTATTATTTT
1 TATTTTATTATTTT
1402251 GTATTTTATTATTTT
1 -TATTTTATTATTTT
1402266 TATTTT
1 TATTTT
1402272 CGGTTATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (14 bp):
TATTTTATTATTTT
Found at i:1403027 original size:2 final size:2
Alignment explanation
Indices: 1403016--1403065 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
1403006 ATATGCATTT
1403016 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1403057 TA TA TA TA T
1 TA TA TA TA T
1403066 TAACGCTTAT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1403375 original size:21 final size:21
Alignment explanation
Indices: 1403333--1403375 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1403323 CTTTTGAATC
**
1403333 ATTTTATTATTTTATTTATAT
1 ATTTTATTATTTTATACATAT
*
1403354 ATTTTATTATTTTATACGTAT
1 ATTTTATTATTTTATACATAT
1403375 A
1 A
1403376 CCTTTTTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (21 bp):
ATTTTATTATTTTATACATAT
Found at i:1407431 original size:2 final size:2
Alignment explanation
Indices: 1407424--1407456 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1407414 GATCTTGAGG
1407424 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1407457 TCAATTTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1409830 original size:13 final size:13
Alignment explanation
Indices: 1409812--1409837 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1409802 TCTACTTAAA
1409812 ATCTTAACATAAG
1 ATCTTAACATAAG
1409825 ATCTTAACATAAG
1 ATCTTAACATAAG
1409838 GAAATAGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
ATCTTAACATAAG
Found at i:1410758 original size:23 final size:25
Alignment explanation
Indices: 1410720--1410779 Score: 79
Period size: 23 Copynumber: 2.5 Consensus size: 25
1410710 GGAAAAAAAA
1410720 CCAACAGGCCCAACAGCCTAGCAGG
1 CCAACAGGCCCAACAGCCTAGCAGG
* *
1410745 CCAACA-G-CCAACAGCTTGGCAGG
1 CCAACAGGCCCAACAGCCTAGCAGG
*
1410768 CCAGCAGGCCCA
1 CCAACAGGCCCA
1410780 TCACAGCAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 19 0.63
24 2 0.07
25 9 0.30
ACGTcount: A:0.30, C:0.40, G:0.25, T:0.05
Consensus pattern (25 bp):
CCAACAGGCCCAACAGCCTAGCAGG
Found at i:1410881 original size:7 final size:7
Alignment explanation
Indices: 1410865--1410918 Score: 56
Period size: 7 Copynumber: 7.3 Consensus size: 7
1410855 CAGTCCAGAA
1410865 AAAAAGAG
1 AAAAA-AG
1410873 AAAAAAG
1 AAAAAAG
1410880 AAAAAAG
1 AAAAAAG
1410887 AGAAAAA-
1 A-AAAAAG
*
1410894 AGAAAAGG
1 A-AAAAAG
1410902 AAAAAAAG
1 -AAAAAAG
1410910 AAAAAAG
1 AAAAAAG
1410917 AA
1 AA
1410919 GCCCGAATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
7 25 0.61
8 15 0.37
9 1 0.02
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:1410885 original size:16 final size:16
Alignment explanation
Indices: 1410864--1410917 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
1410854 CCAGTCCAGA
1410864 AAAAAAGAGAAAAAAG
1 AAAAAAGAGAAAAAAG
1410880 AAAAAAGAGAAAAAAG
1 AAAAAAGAGAAAAAAG
*
1410896 -AAAAGGA-AAAAAAG
1 AAAAAAGAGAAAAAAG
1410910 AAAAAAGA
1 AAAAAAGA
1410918 AGCCCGAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
14 7 0.20
15 12 0.34
16 16 0.46
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AAAAAAGAGAAAAAAG
Found at i:1410905 original size:21 final size:21
Alignment explanation
Indices: 1410875--1410918 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
1410865 AAAAAGAGAA
*
1410875 AAAAGAAAAAAGAGAAAAAAG
1 AAAAGAAAAAAAAGAAAAAAG
*
1410896 AAAAGGAAAAAAAGAAAAAAG
1 AAAAGAAAAAAAAGAAAAAAG
1410917 AA
1 AA
1410919 GCCCGAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (21 bp):
AAAAGAAAAAAAAGAAAAAAG
Found at i:1410908 original size:9 final size:8
Alignment explanation
Indices: 1410861--1410915 Score: 62
Period size: 8 Copynumber: 7.0 Consensus size: 8
1410851 AGCCCAGTCC
1410861 AGAAAAAA
1 AGAAAAAA
1410869 AGAGAAAAA
1 AGA-AAAAA
1410878 AG-AAAAA
1 AGAAAAAA
1410885 AGAGAAAAA
1 AGA-AAAAA
1410894 AG--AAAA
1 AGAAAAAA
*
1410900 GGAAAAAA
1 AGAAAAAA
1410908 AGAAAAAA
1 AGAAAAAA
1410916 GAAGCCCGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
6 5 0.12
7 7 0.17
8 14 0.35
9 14 0.35
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (8 bp):
AGAAAAAA
Found at i:1411100 original size:32 final size:32
Alignment explanation
Indices: 1411040--1411100 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
1411030 ATATTCTTGT
* * *
1411040 TTTTTTTAAGCATTTTTTTATTTTGTATTAGG
1 TTTTTTAAAGCATTTTTTTATGTCGTATTAGG
1411072 TTTTTTAAAGCA-TTTTTTATAGTCGTATT
1 TTTTTTAAAGCATTTTTTTAT-GTCGTATT
1411101 TAATTTCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 8 0.32
32 17 0.68
ACGTcount: A:0.21, C:0.05, G:0.11, T:0.62
Consensus pattern (32 bp):
TTTTTTAAAGCATTTTTTTATGTCGTATTAGG
Found at i:1411362 original size:19 final size:19
Alignment explanation
Indices: 1411321--1411480 Score: 93
Period size: 17 Copynumber: 8.4 Consensus size: 19
1411311 TAAAAAAAAT
*
1411321 AAAAATTCTCGTG-TTTC-
1 AAAAATTTTCGTGTTTTCA
*
1411338 AAAAATTTTCATGTTTTCAA
1 AAAAATTTTCGTGTTTTC-A
1411358 AAAATATTTTCGTGTTTTCAAAA
1 AAAA-ATTTTCGTGTTTTC---A
*
1411381 AAAAATTTCTCGTATTTT--
1 AAAAATTT-TCGTGTTTTCA
* *
1411399 ACAGATTTTCGTGTTTT-A
1 AAAAATTTTCGTGTTTTCA
*
1411417 AAAAATTTTCGT-ATTTC-
1 AAAAATTTTCGTGTTTTCA
* * * *
1411434 TAAGATTCTT-GTATTTCTAA
1 AAAAATT-TTCGTGTTT-TCA
1411454 AAAAATTTTCCGTGTTTTCA
1 AAAAATTTT-CGTGTTTTCA
1411474 AAAAATT
1 AAAAATT
1411481 CCCGTGTTTC
Statistics
Matches: 110, Mismatches: 18, Indels: 27
0.71 0.12 0.17
Matches are distributed among these distances:
17 29 0.26
18 24 0.22
19 3 0.03
20 18 0.16
21 18 0.16
22 4 0.04
23 14 0.13
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (19 bp):
AAAAATTTTCGTGTTTTCA
Found at i:1411389 original size:21 final size:21
Alignment explanation
Indices: 1411338--1411389 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
1411328 CTCGTGTTTC
1411338 AAAAATTTTCATGTTTTCAAA
1 AAAAATTTTCATGTTTTCAAA
* *
1411359 AAATATTTTCGTGTTTTCAAA
1 AAAAATTTTCATGTTTTCAAA
*
1411380 AAAAAATTTC
1 AAAAATTTTC
1411390 TCGTATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (21 bp):
AAAAATTTTCATGTTTTCAAA
Found at i:1411429 original size:35 final size:37
Alignment explanation
Indices: 1411379--1411463 Score: 106
Period size: 35 Copynumber: 2.3 Consensus size: 37
1411369 GTGTTTTCAA
*
1411379 AAAAAAATTTCTCGTATTT-TACAGATT-TTCGTGTTT-T
1 AAAAAAATTT-TCGTATTTCTA-AGATTCTT-GTATTTCT
1411416 -AAAAAATTTTCGTATTTCTAAGATTCTTGTATTTCT
1 AAAAAAATTTTCGTATTTCTAAGATTCTTGTATTTCT
1411452 AAAAAAATTTTC
1 AAAAAAATTTTC
1411464 CGTGTTTTCA
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
35 18 0.42
36 14 0.33
37 11 0.26
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (37 bp):
AAAAAAATTTTCGTATTTCTAAGATTCTTGTATTTCT
Found at i:1411492 original size:18 final size:20
Alignment explanation
Indices: 1411453--1411489 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
1411443 TGTATTTCTA
*
1411453 AAAAAATTTTCCGTGTTTTC
1 AAAAAATTTCCCGTGTTTTC
1411473 AAAAAA-TTCCCGTGTTT
1 AAAAAATTTCCCGTGTTT
1411490 CAATCGGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (20 bp):
AAAAAATTTCCCGTGTTTTC
Found at i:1417429 original size:23 final size:22
Alignment explanation
Indices: 1417397--1417440 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
1417387 GAAAAATAAA
*
1417397 GTATAATAATTGTAATATCTAT
1 GTATAATAATTATAATATCTAT
1417419 GTATAAATAATTATAATATCTA
1 GTAT-AATAATTATAATATCTA
1417441 ATACAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (22 bp):
GTATAATAATTATAATATCTAT
Found at i:1420393 original size:30 final size:30
Alignment explanation
Indices: 1420359--1420419 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
1420349 AGTATGAAAC
1420359 AACAAAAGTGACATAATAATATTAATTATA
1 AACAAAAGTGACATAATAATATTAATTATA
1420389 AACAAAAGTGACATAATAATATTAATTATA
1 AACAAAAGTGACATAATAATATTAATTATA
1420419 A
1 A
1420420 TTTAAAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (30 bp):
AACAAAAGTGACATAATAATATTAATTATA
Done.