Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60982465
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 868082 characters in sequence are not A, C, G, or T
File 56 of 204
Found at i:18185072 original size:37 final size:37
Alignment explanation
Indices: 18185022--18185095 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
18185012 TTGGAACATC
18185022 ACTGTAAGTTCCGTTTAACTATTGTTATTACTATCAT
1 ACTGTAAGTTCCGTTTAACTATTGTTATTACTATCAT
18185059 ACTGTAAGTTCCGTTTAACTATTGTTATTACTATCAT
1 ACTGTAAGTTCCGTTTAACTATTGTTATTACTATCAT
18185096 TATTAAAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (37 bp):
ACTGTAAGTTCCGTTTAACTATTGTTATTACTATCAT
Found at i:18196195 original size:41 final size:40
Alignment explanation
Indices: 18196086--18196198 Score: 142
Period size: 37 Copynumber: 2.9 Consensus size: 40
18196076 ATCAGATATT
**
18196086 TCGAAGTAATAATTTGACACCCAGTGTCTCATCGGCTAAA
1 TCGAAGTAATAATTTGACACCCAGTGTCTCATCGAATAAA
* * * *
18196126 TCGAAGT-A-AA-TTGGCACCCAATGCCTCATCGAATATA
1 TCGAAGTAATAATTTGACACCCAGTGTCTCATCGAATAAA
18196163 TCCGAAGTAATAATTTGACACCCAGTGTCTCATCGA
1 T-CGAAGTAATAATTTGACACCCAGTGTCTCATCGA
18196199 CTTGAAGTCG
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
37 22 0.37
38 8 0.13
39 2 0.03
40 9 0.15
41 19 0.32
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (40 bp):
TCGAAGTAATAATTTGACACCCAGTGTCTCATCGAATAAA
Found at i:18197071 original size:10 final size:10
Alignment explanation
Indices: 18197056--18197094 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
18197046 AACCCTAACA
18197056 TTTCTTTCTC
1 TTTCTTTCTC
18197066 TTTCTTTC-C
1 TTTCTTTCTC
*
18197075 TTTCCTTTCTG
1 TTT-CTTTCTC
18197086 TTTCTTTCT
1 TTTCTTTCT
18197095 TTCTCGTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 4 0.15
10 19 0.73
11 3 0.12
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69
Consensus pattern (10 bp):
TTTCTTTCTC
Found at i:18197084 original size:20 final size:19
Alignment explanation
Indices: 18197059--18197097 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
18197049 CCTAACATTT
18197059 CTTTCTCTTTCTTTCCTTTC
1 CTTTCTCTTTCTTT-CTTTC
*
18197079 CTTTCTGTTTCTTTCTTTC
1 CTTTCTCTTTCTTTCTTTC
18197098 TCGTTTGTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.00, C:0.31, G:0.03, T:0.67
Consensus pattern (19 bp):
CTTTCTCTTTCTTTCTTTC
Found at i:18197161 original size:9 final size:9
Alignment explanation
Indices: 18197149--18197173 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
18197139 TTATTATATA
18197149 ATATATAAT
1 ATATATAAT
18197158 ATATATAAT
1 ATATATAAT
18197167 ATATATA
1 ATATATA
18197174 CTTAATCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATATATAAT
Found at i:18202185 original size:44 final size:44
Alignment explanation
Indices: 18202032--18202190 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 44
18202022 AGCTCGTACA
* * *
18202032 ATGCCAACGTCCCAGACGT-GGTCTTACATGTAAA-CAAATAACG
1 ATGCCAATGTCCCAGACGTATGTCTTACACGTAAATCAAAT-ACG
* * * * *
18202075 ATGCCATTGTCCTAGAC-AATGTCTTACAC-AAAATCATATACG
1 ATGCCAATGTCCCAGACGTATGTCTTACACGTAAATCAAATACG
18202117 ATGCCAATGTCCCAG--GTATGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACGTAT-GTCTTACACGTAAA--TCAAATACG
18202161 ATGCCAATGTCCCAGACGTA-GTCTTACACG
1 ATGCCAATGTCCCAGACGTATGTCTTACACG
18202191 ATATCACATA
Statistics
Matches: 94, Mismatches: 13, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
41 2 0.02
42 28 0.30
43 29 0.31
44 27 0.29
45 5 0.05
46 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACGTATGTCTTACACGTAAATCAAATACG
Found at i:18206201 original size:4 final size:4
Alignment explanation
Indices: 18206192--18206218 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
18206182 AGTAAAATAA
18206192 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
18206219 ACTATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:18206303 original size:24 final size:25
Alignment explanation
Indices: 18206276--18206329 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
18206266 AAATATAACA
18206276 AAAATATATGT-ATATATGA-ATTAT
1 AAAATATATGTAATATAT-ATATTAT
18206300 AAAATATATGTACATATATATATTAT
1 AAAATATATGTA-ATATATATATTAT
18206326 AAAA
1 AAAA
18206330 ATGTATAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 11 0.41
25 1 0.04
26 15 0.56
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.39
Consensus pattern (25 bp):
AAAATATATGTAATATATATATTAT
Found at i:18206525 original size:23 final size:22
Alignment explanation
Indices: 18206498--18206542 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
18206488 TAAGATGATT
18206498 TATGAAGAAACTAAATATTAATA
1 TATGAAGAAACTAAATA-TAATA
*
18206521 TATGAAGAAACTTAATATAATA
1 TATGAAGAAACTAAATATAATA
18206543 ATACATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (22 bp):
TATGAAGAAACTAAATATAATA
Found at i:18220208 original size:2 final size:2
Alignment explanation
Indices: 18220201--18220237 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
18220191 CTAGGTCCTT
18220201 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18220238 TGCTTTTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:18227081 original size:22 final size:22
Alignment explanation
Indices: 18227019--18227090 Score: 117
Period size: 22 Copynumber: 3.3 Consensus size: 22
18227009 ATTGTTCAAA
* **
18227019 CATGAGAGCTTAGTACGTGAAA
1 CATGAGAGCTTAGTACGTTAGC
18227041 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
18227063 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
18227085 CATGAG
1 CATGAG
18227091 CCATTTGTCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (22 bp):
CATGAGAGCTTAGTACGTTAGC
Found at i:18227171 original size:51 final size:50
Alignment explanation
Indices: 18227090--18227261 Score: 272
Period size: 51 Copynumber: 3.4 Consensus size: 50
18227080 TTAGCCATGA
* *
18227090 GCCATTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTT
1 GCCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTT
* *
18227141 GCCACTTGTCACTAATCAGATAAGTGTAGCTAGGCTACCACTTATCACTT
1 GCCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTT
*
18227191 GTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTT
1 GCCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTT
*
18227242 GTCACTTGTCACTGATCAGA
1 GCCACTTGTCACTGATCAGA
18227262 AGTACTCAAA
Statistics
Matches: 113, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
50 46 0.41
51 67 0.59
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (50 bp):
GCCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTT
Found at i:18230996 original size:16 final size:15
Alignment explanation
Indices: 18230917--18230998 Score: 60
Period size: 16 Copynumber: 5.3 Consensus size: 15
18230907 CCAACGCGGA
*
18230917 ATATCCTTAGAATGGG
1 ATATCCCTA-AATGGG
* *
18230933 ATATCCCCAAACTGAG
1 ATATCCCTAAA-TGGG
**
18230949 ATATCCCTATTTGGG
1 ATATCCCTAAATGGG
18230964 ATAT--CTAAAATTGGG
1 ATATCCCT-AAA-TGGG
18230979 ATATCCCTGAAATGGG
1 ATATCCCT-AAATGGG
18230995 ATAT
1 ATAT
18230999 TCCCACTTAG
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
13 2 0.04
14 1 0.02
15 17 0.33
16 26 0.51
17 5 0.10
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (15 bp):
ATATCCCTAAATGGG
Found at i:18233580 original size:51 final size:50
Alignment explanation
Indices: 18233504--18233732 Score: 359
Period size: 51 Copynumber: 4.5 Consensus size: 50
18233494 TTTGAGTACT
18233504 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGC-TTAGCTACACTTA
*
18233555 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTA
* * *
18233605 TCTGATTAGTGACAAGTGGCAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTT-AGCTACACTTA
* * *
18233656 TCTGATCAGTGACAAATGGCAAGTGATAAGTGGTAGCTTAGCTATACTTA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTA
* *
18233706 TCTGATCAGGGACAAGTGATAAGTGAT
1 TCTGATCAGTGACAAGTGACAAGTGAT
18233733 CGTACGCAAG
Statistics
Matches: 164, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
50 80 0.49
51 84 0.51
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.28
Consensus pattern (50 bp):
TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:18233679 original size:101 final size:101
Alignment explanation
Indices: 18233504--18233732 Score: 368
Period size: 101 Copynumber: 2.3 Consensus size: 101
18233494 TTTGAGTACT
* *
18233504 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
*
18233569 AGTGACAAGTGATAAGTGGTAGCCTAGCTACACTTA
66 AATGACAAGTGATAAGTGGTAGCCTAGCTACACTTA
* *
18233605 TCTGATTAGTGACAAGTGGCAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
1 TCTGATCAGTGACAAGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* * *
18233670 AATGGCAAGTGATAAGTGGTAGCTTAGCTATACTTA
66 AATGACAAGTGATAAGTGGTAGCCTAGCTACACTTA
* *
18233706 TCTGATCAGGGACAAGTGATAAGTGAT
1 TCTGATCAGTGACAAGTGACAAGTGAT
18233733 CGTACGCAAG
Statistics
Matches: 116, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 116 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.28
Consensus pattern (101 bp):
TCTGATCAGTGACAAGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
AATGACAAGTGATAAGTGGTAGCCTAGCTACACTTA
Found at i:18236776 original size:26 final size:27
Alignment explanation
Indices: 18236747--18236799 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
18236737 TATAACTTTT
18236747 TTTATTTACCAAAATATAT-AAAAAAA
1 TTTATTTACCAAAATATATCAAAAAAA
18236773 TTTATTTACCAAAATATATCAAAAAAA
1 TTTATTTACCAAAATATATCAAAAAAA
18236800 CTGCAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (27 bp):
TTTATTTACCAAAATATATCAAAAAAA
Found at i:18236806 original size:11 final size:11
Alignment explanation
Indices: 18236792--18236820 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
18236782 CAAAATATAT
18236792 CAAAAAAACTG
1 CAAAAAAACTG
18236803 C-AAAAAACTG
1 CAAAAAAACTG
18236813 CAAAAAAA
1 CAAAAAAA
18236821 TCAGATCGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.69, C:0.17, G:0.07, T:0.07
Consensus pattern (11 bp):
CAAAAAAACTG
Found at i:18236817 original size:9 final size:10
Alignment explanation
Indices: 18236794--18236819 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
18236784 AAATATATCA
18236794 AAAAAACTGC
1 AAAAAACTGC
18236804 AAAAAACTGC
1 AAAAAACTGC
18236814 AAAAAA
1 AAAAAA
18236820 ATCAGATCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.69, C:0.15, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAAAACTGC
Found at i:18236880 original size:27 final size:27
Alignment explanation
Indices: 18236850--18236925 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
18236840 AACTGGTCAC
*
18236850 GCCAATGTAATTGGCGGCACCAAAGGT
1 GCCAATGTCATTGGCGGCACCAAAGGT
*** *
18236877 GCCAAAACCATTGGCGGCACCAATGGT
1 GCCAATGTCATTGGCGGCACCAAAGGT
18236904 GCCAATGTCATTGGCGGCACCA
1 GCCAATGTCATTGGCGGCACCA
18236926 CTCGTATTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.17
Consensus pattern (27 bp):
GCCAATGTCATTGGCGGCACCAAAGGT
Found at i:18237021 original size:11 final size:11
Alignment explanation
Indices: 18237005--18237040 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
18236995 GTTGGCGCGG
18237005 AAAAGAAGAGA
1 AAAAGAAGAGA
18237016 AAAAG-AGAGA
1 AAAAGAAGAGA
*
18237026 AAAAGAGGAGA
1 AAAAGAAGAGA
18237037 AAAA
1 AAAA
18237041 TGAGATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAGA
Found at i:18237024 original size:10 final size:10
Alignment explanation
Indices: 18237005--18237045 Score: 55
Period size: 11 Copynumber: 3.8 Consensus size: 10
18236995 GTTGGCGCGG
18237005 AAAAGAAGAGA
1 AAAAG-AGAGA
18237016 AAAAGAGAGA
1 AAAAGAGAGA
18237026 AAAAGAGGAGA
1 AAAAGA-GAGA
18237037 AAAATGAGA
1 AAAA-GAGA
18237046 TATTTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 11 0.39
11 15 0.54
12 2 0.07
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.02
Consensus pattern (10 bp):
AAAAGAGAGA
Found at i:18237031 original size:21 final size:22
Alignment explanation
Indices: 18237005--18237045 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
18236995 GTTGGCGCGG
18237005 AAAAGAAGAGAAAAA-GAGAGA
1 AAAAGAAGAGAAAAATGAGAGA
*
18237026 AAAAGAGGAGAAAAATGAGA
1 AAAAGAAGAGAAAAATGAGA
18237046 TATTTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.02
Consensus pattern (22 bp):
AAAAGAAGAGAAAAATGAGAGA
Found at i:18237112 original size:47 final size:47
Alignment explanation
Indices: 18237051--18237145 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
18237041 TGAGATATTT
18237051 TTTTAAAAATAATTGATTATATTGTTGTTATTATTTTGTATATTTTG
1 TTTTAAAAATAATTGATTATATTGTTGTTATTATTTTGTATATTTTG
18237098 TTTTAAAAATAATTGATTATATTGTTGTTATTATTTTGTATATTTTG
1 TTTTAAAAATAATTGATTATATTGTTGTTATTATTTTGTATATTTTG
18237145 T
1 T
18237146 AATATTTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.60
Consensus pattern (47 bp):
TTTTAAAAATAATTGATTATATTGTTGTTATTATTTTGTATATTTTG
Found at i:18237153 original size:19 final size:21
Alignment explanation
Indices: 18237068--18237153 Score: 61
Period size: 21 Copynumber: 4.0 Consensus size: 21
18237058 AATAATTGAT
*
18237068 TATATTGTTGTTATTATTTTG
1 TATATTGTTGTTAATATTTTG
* *
18237089 TATATT-TTGTTTTAAAAATAATTG
1 TATATTGTTG--TT-AATAT-TTTG
*
18237113 ATTATATTGTTGTTATTATTTTG
1 --TATATTGTTGTTAATATTTTG
18237136 TATATT-TTG-TAATATTTT
1 TATATTGTTGTTAATATTTT
18237154 TTGTTTTAGT
Statistics
Matches: 51, Mismatches: 7, Indels: 16
0.69 0.09 0.22
Matches are distributed among these distances:
19 8 0.16
20 6 0.12
21 12 0.24
22 2 0.04
23 6 0.12
24 6 0.12
25 2 0.04
26 6 0.12
27 3 0.06
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (21 bp):
TATATTGTTGTTAATATTTTG
Found at i:18237229 original size:3 final size:3
Alignment explanation
Indices: 18237223--18237248 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
18237213 ATTATTATTA
18237223 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
18237249 AGTATTAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:18237467 original size:26 final size:26
Alignment explanation
Indices: 18237438--18237490 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18237428 TTTTAGTGTG
*
18237438 TATTATTTTGAGTATAAAATTATTAA
1 TATTATTTTGAGTATAAAATTAATAA
18237464 TATTATTTTGAGTATAAAATTAATAA
1 TATTATTTTGAGTATAAAATTAATAA
18237490 T
1 T
18237491 TTTAGTGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (26 bp):
TATTATTTTGAGTATAAAATTAATAA
Found at i:18237513 original size:12 final size:12
Alignment explanation
Indices: 18237496--18237532 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
18237486 ATAATTTTAG
18237496 TGTGTATTATTT
1 TGTGTATTATTT
18237508 TGTGTATTATTT
1 TGTGTATTATTT
* *
18237520 TGAGTATAATTT
1 TGTGTATTATTT
18237532 T
1 T
18237533 TTTTAAGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (12 bp):
TGTGTATTATTT
Found at i:18240957 original size:16 final size:16
Alignment explanation
Indices: 18240936--18240985 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
18240926 CCAACGCGGA
18240936 ATATCCTTAGAATGGG
1 ATATCCTTAGAATGGG
* **
18240952 ATATCCCTA-TTTGGG
1 ATATCCTTAGAATGGG
*
18240967 ATAT-CTAAGAATGGG
1 ATATCCTTAGAATGGG
18240982 ATAT
1 ATAT
18240986 TCCCACTTGG
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
14 2 0.08
15 16 0.62
16 8 0.31
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.34
Consensus pattern (16 bp):
ATATCCTTAGAATGGG
Found at i:18244165 original size:19 final size:21
Alignment explanation
Indices: 18244127--18244165 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
18244117 AATAATTGAT
*
18244127 TATATTGTTGTCATTATTTTG
1 TATATTGTTGTCAATATTTTG
18244148 TATATT-TTGT-AATATTTT
1 TATATTGTTGTCAATATTTT
18244166 TTGTTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.64
Consensus pattern (21 bp):
TATATTGTTGTCAATATTTTG
Found at i:18244241 original size:3 final size:3
Alignment explanation
Indices: 18244235--18244263 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
18244225 ATTATTATTA
18244235 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
18244264 AGTATTAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:18244482 original size:26 final size:26
Alignment explanation
Indices: 18244453--18244505 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18244443 TTTTAGTGTG
*
18244453 TATTATTTTGAGTATAAAATTATTAA
1 TATTATTTTGAGTATAAAATTAATAA
18244479 TATTATTTTGAGTATAAAATTAATAA
1 TATTATTTTGAGTATAAAATTAATAA
18244505 T
1 T
18244506 TTTAGTGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (26 bp):
TATTATTTTGAGTATAAAATTAATAA
Found at i:18244501 original size:62 final size:62
Alignment explanation
Indices: 18244419--18244591 Score: 314
Period size: 62 Copynumber: 2.8 Consensus size: 62
18244409 GTTAGTTAGT
*
18244419 TATTATTTTTAG--TAAAATTAATAATTTTAGTGTGTATTATTTTGAGTATAAAATTATTAA
1 TATTATTTTGAGTATAAAATTAATAATTTTAGTGTGTATTATTTTGAGTATAAAATTATTAA
18244479 TATTATTTTGAGTATAAAATTAATAATTTTAGTGTGTATTATTTTGAGTATAAAATTATTAA
1 TATTATTTTGAGTATAAAATTAATAATTTTAGTGTGTATTATTTTGAGTATAAAATTATTAA
*
18244541 TATTATTTTGAGTATAAAATTAATAATTTTAGTGTGTATTATTTTGTGTAT
1 TATTATTTTGAGTATAAAATTAATAATTTTAGTGTGTATTATTTTGAGTAT
18244592 TATTTTGAGT
Statistics
Matches: 109, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
60 11 0.10
62 98 0.90
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (62 bp):
TATTATTTTGAGTATAAAATTAATAATTTTAGTGTGTATTATTTTGAGTATAAAATTATTAA
Found at i:18244526 original size:36 final size:36
Alignment explanation
Indices: 18244479--18244591 Score: 138
Period size: 36 Copynumber: 3.4 Consensus size: 36
18244469 AAATTATTAA
18244479 TATTATTTTGAGTATAAAATTAATAATTTTAGTGTG
1 TATTATTTTGAGTATAAAATTAATAATTTTAGTGTG
*
18244515 TATTATTTTGAGTATAAAA-T--T-A--TTA----A
1 TATTATTTTGAGTATAAAATTAATAATTTTAGTGTG
18244541 TATTATTTTGAGTATAAAATTAATAATTTTAGTGTG
1 TATTATTTTGAGTATAAAATTAATAATTTTAGTGTG
*
18244577 TATTATTTTGTGTAT
1 TATTATTTTGAGTAT
18244592 TATTTTGAGT
Statistics
Matches: 64, Mismatches: 3, Indels: 20
0.74 0.03 0.23
Matches are distributed among these distances:
26 19 0.30
27 1 0.02
29 1 0.02
30 4 0.06
32 4 0.06
33 1 0.02
35 1 0.02
36 33 0.52
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.52
Consensus pattern (36 bp):
TATTATTTTGAGTATAAAATTAATAATTTTAGTGTG
Found at i:18244544 original size:26 final size:26
Alignment explanation
Indices: 18244515--18244567 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18244505 TTTTAGTGTG
*
18244515 TATTATTTTGAGTATAAAATTATTAA
1 TATTATTTTGAGTATAAAATTAATAA
18244541 TATTATTTTGAGTATAAAATTAATAA
1 TATTATTTTGAGTATAAAATTAATAA
18244567 T
1 T
18244568 TTTAGTGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (26 bp):
TATTATTTTGAGTATAAAATTAATAA
Found at i:18244590 original size:12 final size:12
Alignment explanation
Indices: 18244573--18244609 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
18244563 ATAATTTTAG
18244573 TGTGTATTATTT
1 TGTGTATTATTT
18244585 TGTGTATTATTT
1 TGTGTATTATTT
* *
18244597 TGAGTATAATTT
1 TGTGTATTATTT
18244609 T
1 T
18244610 TTTTAAGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (12 bp):
TGTGTATTATTT
Found at i:18248190 original size:158 final size:158
Alignment explanation
Indices: 18247745--18248193 Score: 393
Period size: 160 Copynumber: 2.8 Consensus size: 158
18247735 AGTTGAAAAA
* * *
18247745 AAAAGTTAGTAAATAAATCTTACTTCGGCCATTTATTCGTATTTTTTTCTTCGCATGTTATTACT
1 AAAAGTTAGT-AATAACTCTTACTTCTGCCATTTATTCGTATTTTTTTC-TCGCATTTTATTACT
* *
18247810 TTAAAAAATATTAT-AATTTCTAATTTTATAATTTTACATTATTTCAGTGCATAATGTTTGAAAT
64 TT-AAAAATATTATAAACTTAT-ATTTTATAATTTTACATTATTTCAGTGCATAATGTTTGAAA-
* *
18247874 TTATTACTCTAGTGTGTTATTTAAATTAATTTGGTGT
126 -TATTACTCTAGTGTATTATTT--ATTAATTT-GTAT
* ** * * *
18247911 AAAA---A--AATAACCCTTACCCCTGCCCTTTACTCGTATTATTTTCTCG-ATTTTTATTACTT
1 AAAAGTTAGTAATAACTCTTACTTCTGCCATTTATTCGTATTTTTTTCTCGCA-TTTTATTACTT
* * * * * ** *
18247970 TAAATGAA-ATTATATTATTCTCATATTTTATTATTTTATATTATTTCAGTACATTTTCTTTGAA
65 TAAA--AATATTATA--A-ACTTATATTTTATAATTTTACATTATTTCAGTGCATAATGTTTGAA
* *
18248034 ATATT-TTGTA-T-TAATTATTT-TTGAATTT-TAT
125 ATATTACTCTAGTGT-ATTATTTATT-AATTTGTAT
*
18248065 AAAAGTTAGTAATACACTCTTACTTCTGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTACT
1 AAAAGTTAGTAATA-ACTCTTACTTCTGCCATTTATTCGTATTTTTTTCT-CGCATTTTATTACT
* *
18248130 TTAAAAATATTATAAACTTAGTCTTTTATAATTTTACATTATTTCAGTGCATCATGTTTGAAAT
64 TTAAAAATATTATAAACTTA-TATTTTATAATTTTACATTATTTCAGTGCATAATGTTTGAAAT
18248194 TTATTAATTT
Statistics
Matches: 225, Mismatches: 39, Indels: 46
0.73 0.13 0.15
Matches are distributed among these distances:
154 6 0.03
155 2 0.01
156 5 0.02
157 5 0.02
158 48 0.21
159 28 0.12
160 70 0.31
161 17 0.08
162 37 0.16
163 3 0.01
166 4 0.02
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.49
Consensus pattern (158 bp):
AAAAGTTAGTAATAACTCTTACTTCTGCCATTTATTCGTATTTTTTTCTCGCATTTTATTACTTT
AAAAATATTATAAACTTATATTTTATAATTTTACATTATTTCAGTGCATAATGTTTGAAATATTA
CTCTAGTGTATTATTTATTAATTTGTAT
Found at i:18249077 original size:39 final size:40
Alignment explanation
Indices: 18249034--18249159 Score: 141
Period size: 39 Copynumber: 3.1 Consensus size: 40
18249024 TTTTTTTTCC
18249034 TTCCTTCCCTCTTCTTC-TTCTTTTTTTTTCTCTTCTCCT
1 TTCCTTCCCTCTTCTTCTTTCTTTTTTTTTCTCTTCTCCT
** * *
18249073 TTCCTTTTCT-TTCCTTCTTTCTTTCTTTTT-TCTTCTCTT
1 TTCCTTCCCTCTT-CTTCTTTCTTTTTTTTTCTCTTCTCCT
*
18249112 TTCCTTCTCTTCTTCTTCTTTCTTTCTTTTTTTTCTCTTCTCCT
1 TTCCTTC-CCTCTTCTTCTTTC--T-TTTTTTTTCTCTTCTCCT
18249156 TTCC
1 TTCC
18249160 CTTTCTTTCC
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
38 2 0.03
39 26 0.37
40 20 0.29
41 2 0.03
42 1 0.01
43 7 0.10
44 12 0.17
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (40 bp):
TTCCTTCCCTCTTCTTCTTTCTTTTTTTTTCTCTTCTCCT
Found at i:18249094 original size:4 final size:4
Alignment explanation
Indices: 18249078--18249228 Score: 100
Period size: 4 Copynumber: 37.0 Consensus size: 4
18249068 CTCCTTTCCT
* *
18249078 TTTC TTTC CTTC TTTC TTTC TTT- TTTC TTCTC TTTTC CTTC TCTTC -TTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-TC -TTTC TTTC T-TTC TTTC
*
18249127 -TTC TTTC TTTC TTT- TTT- TTCTC TTCTCC TTTCCC TTTC TTTC CTTC
1 TTTC TTTC TTTC TTTC TTTC TT-TC TT-T-C TTT--C TTTC TTTC TTTC
* * * *
18249173 -TT- TTTC TTTC TTCCC TCTCC TTTC TTCC TTTC TTTC TCTC TTTC TTTC
1 TTTC TTTC TTTC TT-TC T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
18249221 TTTC TTTC
1 TTTC TTTC
18249229 CCTCTCCTTC
Statistics
Matches: 123, Mismatches: 11, Indels: 26
0.77 0.07 0.16
Matches are distributed among these distances:
3 18 0.15
4 77 0.63
5 17 0.14
6 11 0.09
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (4 bp):
TTTC
Found at i:18249114 original size:29 final size:28
Alignment explanation
Indices: 18249034--18249223 Score: 88
Period size: 29 Copynumber: 7.0 Consensus size: 28
18249024 TTTTTTTTCC
*
18249034 TTCCTTC-CCTCTTCTTC-TTCTTT-TT
1 TTCCTTCTCTTCTTCTTCTTTCTTTCTT
18249059 TT--TTCTCTTC-TC--CTTTCCTTT-TCT
1 TTCCTTCTCTTCTTCTTCTTT-CTTTCT-T
* *
18249083 TTCCTTCT-TTCTTTCTTTTTTCTTCTCTT
1 TTCCTTCTCTT-CTTCTTCTTTCTT-TCTT
18249112 TTCCTTCTCTTCTTCTTCTTTCTTTCTT
1 TTCCTTCTCTTCTTCTTCTTTCTTTCTT
** * **
18249140 TTTTTTCTCTTCTCCTT-TCCCTTTC-T
1 TTCCTTCTCTTCTTCTTCTTTCTTTCTT
* * *
18249166 TTCCTTCT-TT-TTCTTTCTTCCCTCTCCT
1 TTCCTTCTCTTCTTC-TTCTT-TCTTTCTT
18249194 TT-CTTC-CTTTCTTTCTCTCTTTCTTTCTT
1 TTCCTTCTC-TTC-TTCT-TCTTTCTTTCTT
18249223 T
1 T
18249224 CTTTCCCTCT
Statistics
Matches: 125, Mismatches: 18, Indels: 40
0.68 0.10 0.22
Matches are distributed among these distances:
21 1 0.01
22 2 0.02
23 10 0.08
24 8 0.06
25 8 0.06
26 12 0.10
27 17 0.14
28 26 0.21
29 31 0.25
30 10 0.08
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (28 bp):
TTCCTTCTCTTCTTCTTCTTTCTTTCTT
Found at i:18249117 original size:44 final size:42
Alignment explanation
Indices: 18249043--18249228 Score: 176
Period size: 40 Copynumber: 4.5 Consensus size: 42
18249033 CTTCCTTCCC
*
18249043 TCTTC-TTC-TTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTT
1 TCTTCTTTCTTTCTTTTTTCTTCTCTTCTCC-TTCCTTTTCTT
* *
18249084 TCCTTCTTTCTTTCTTTTTTCTTCTCTTTTCCTT-CTCTTC-T
1 T-CTTCTTTCTTTCTTTTTTCTTCTCTTCTCCTTCCTTTTCTT
*
18249125 TCTTCTTTCTTTCTTTTTT-TTCTCTTCTCCTTTCCCTTTCTT
1 TCTTCTTTCTTTCTTTTTTCTTCTCTTCTCC-TTCCTTTTCTT
* *
18249167 TCCTTC-TT-TTTCTTTCTTCCCTCTCCTT-T-CTTCC-TTTCTT
1 T-CTTCTTTCTTTCTTT-TTTCTTCT-CTTCTCCTTCCTTTTCTT
18249207 TCTCTCTTTCTTTCTTTCTTTC
1 TCT-TCTTTCTTTCTTT-TTTC
18249229 CCTCTCCTTC
Statistics
Matches: 123, Mismatches: 9, Indels: 25
0.78 0.06 0.16
Matches are distributed among these distances:
39 12 0.10
40 29 0.24
41 20 0.16
42 27 0.22
43 13 0.11
44 22 0.18
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (42 bp):
TCTTCTTTCTTTCTTTTTTCTTCTCTTCTCCTTCCTTTTCTT
Found at i:18249154 original size:83 final size:80
Alignment explanation
Indices: 18249017--18249223 Score: 251
Period size: 83 Copynumber: 2.5 Consensus size: 80
18249007 AAATTACCTT
* * *
18249017 TTTTTTCTT-TTTTTTCCTTCCTTCCCTCTTC-TTC-TTCTTTTTTTTTCTCTTCTCCTTTCCTT
1 TTTTTTCTTCTCTTTTCCTTCCTT-CTTCTTCTTTCTTTC-TTTTTTTTCTCTTCTCCTTTCCCT
18249079 TTCTTTCCTTCTTTCTTTC
64 TTCTTTCCTTC-TT-TTTC
18249098 TTTTTTCTTCTCTTTTCCTTCTCTTCTTCTTCTTTCTTTCTTTTTTTTCTCTTCTCCTTTCCCTT
1 TTTTTTCTTCTCTTTTCCTTC-CTTCTTCTTCTTTCTTTCTTTTTTTTCTCTTCTCCTTTCCCTT
18249163 TCTTTCCTTCTTTTTC
65 TCTTTCCTTCTTTTTC
* * *
18249179 TTTCTTCCCTCTCCTTT-CTTCCTTTCTTTCTCTCTTTCTTTCTTT
1 TTT-TTTCTTCTCTTTTCCTTCC-TTC-TTCT-TCTTTCTTTCTTT
18249224 CTTTCCCTCT
Statistics
Matches: 112, Mismatches: 6, Indels: 14
0.85 0.05 0.11
Matches are distributed among these distances:
80 1 0.01
81 23 0.21
82 32 0.29
83 53 0.47
84 3 0.03
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (80 bp):
TTTTTTCTTCTCTTTTCCTTCCTTCTTCTTCTTTCTTTCTTTTTTTTCTCTTCTCCTTTCCCTTT
CTTTCCTTCTTTTTC
Found at i:18249174 original size:39 final size:39
Alignment explanation
Indices: 18249047--18249219 Score: 167
Period size: 39 Copynumber: 4.3 Consensus size: 39
18249037 CTTCCCTCTT
*
18249047 CTTC-TTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
1 CTTCTTTC-TTTTTTTTCTCTTCTCCTTTCCCTTTCTTTC
*
18249086 CTTCTTTCTTTCTTTTT-TCTTCTCTTTTCCTTCTCTTCTTCTTC
1 CTTCTTTCTTT-TTTTTCTCTTCTCCTTTCC--CT-TTC-T-TTC
*
18249130 TTTCTTTCTTTTTTTTCTCTTCTCCTTTCCCTTTCTTTC
1 CTTCTTTCTTTTTTTTCTCTTCTCCTTTCCCTTTCTTTC
* *
18249169 CTTCTTT-TTCTTTCTTC-CCTCTCCTTTCTTCCTTTCTTT-
1 CTTCTTTCTT-TTTTTTCTCTTCTCCTTTC--CCTTTCTTTC
18249208 CTCTCTTTCTTT
1 CT-TCTTTCTTT
18249220 CTTTCTTTCC
Statistics
Matches: 114, Mismatches: 7, Indels: 25
0.78 0.05 0.17
Matches are distributed among these distances:
38 12 0.11
39 36 0.32
40 24 0.21
41 6 0.05
42 5 0.04
43 6 0.05
44 25 0.22
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (39 bp):
CTTCTTTCTTTTTTTTCTCTTCTCCTTTCCCTTTCTTTC
Found at i:18249195 original size:32 final size:34
Alignment explanation
Indices: 18249127--18249218 Score: 100
Period size: 35 Copynumber: 2.7 Consensus size: 34
18249117 TCTCTTCTTC
* * *
18249127 TTCTTTCTTTCTTTTTTTTCTCTTCTCCTTTCCCT
1 TTCTTTCCTTCTTTTTCTT-TCTTCTCCTCTCCCT
18249162 TTCTTTCCTTCTTTTTCTTTCTTC-CCTCT-CCT
1 TTCTTTCCTTCTTTTTCTTTCTTCTCCTCTCCCT
18249194 TTC-TTCCTTTCTTTCTCTCTTTCTT
1 TTCTTTCC-TTCTTT-T-TCTTTCTT
18249219 TCTTTCTTTC
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
31 4 0.08
32 12 0.24
33 5 0.10
34 13 0.25
35 17 0.33
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (34 bp):
TTCTTTCCTTCTTTTTCTTTCTTCTCCTCTCCCT
Found at i:18249348 original size:27 final size:27
Alignment explanation
Indices: 18249273--18249339 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
18249263 TATTACTAAC
18249273 TGGTGCCGCCAATGATATTGGCACCAT
1 TGGTGCCGCCAATGATATTGGCACCAT
* * *
18249300 TGGTGCCGCCAATGGTTTTGGCACCTT
1 TGGTGCCGCCAATGATATTGGCACCAT
18249327 TGGTGCCGCCAAT
1 TGGTGCCGCCAAT
18249340 CCCATTGGCG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.16, C:0.27, G:0.28, T:0.28
Consensus pattern (27 bp):
TGGTGCCGCCAATGATATTGGCACCAT
Found at i:18249431 original size:26 final size:26
Alignment explanation
Indices: 18249402--18249453 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18249392 TTTTTTTTGG
18249402 TTTTTTTATATATTTTGGTAAATAAA
1 TTTTTTTATATATTTTGGTAAATAAA
18249428 TTTTTTTATATATTTTGGTAAATAAA
1 TTTTTTTATATATTTTGGTAAATAAA
18249454 AAAAAGTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (26 bp):
TTTTTTTATATATTTTGGTAAATAAA
Found at i:18252318 original size:30 final size:30
Alignment explanation
Indices: 18252284--18252343 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
18252274 ATATTTGTAA
18252284 AAGGTTAGAATTAGAGGTTAAGGATTAAAT
1 AAGGTTAGAATTAGAGGTTAAGGATTAAAT
18252314 AAGGTTAGAATTAGAGGTTAAGGATTAAAT
1 AAGGTTAGAATTAGAGGTTAAGGATTAAAT
18252344 TAAAATCTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.30
Consensus pattern (30 bp):
AAGGTTAGAATTAGAGGTTAAGGATTAAAT
Found at i:18252344 original size:19 final size:19
Alignment explanation
Indices: 18252292--18252345 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
18252282 AAAAGGTTAG
18252292 AATTAGAGGTTAAGGATTA
1 AATTAGAGGTTAAGGATTA
18252311 AA-TA-AGGTT-A-G----
1 AATTAGAGGTTAAGGATTA
18252322 AATTAGAGGTTAAGGATTA
1 AATTAGAGGTTAAGGATTA
18252341 AATTA
1 AATTA
18252346 AAATCTGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 16
0.63 0.00 0.37
Matches are distributed among these distances:
11 2 0.07
12 2 0.07
13 5 0.19
14 1 0.04
15 2 0.07
16 1 0.04
17 5 0.19
18 2 0.07
19 7 0.26
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.31
Consensus pattern (19 bp):
AATTAGAGGTTAAGGATTA
Found at i:18254165 original size:45 final size:44
Alignment explanation
Indices: 18254069--18254172 Score: 154
Period size: 45 Copynumber: 2.3 Consensus size: 44
18254059 TTAATCCGCT
* * * *
18254069 CCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCACTAGCTTCAGTCTGCC
*
18254113 CCACTGCAACTTCAGGGAGATAAGACTCACTATCTTCAGTCTGCC
1 CCACTGCAACTTCAGGGAGATAAGA-TCACTAGCTTCAGTCTGCC
18254158 CCACTGCAACTTCAG
1 CCACTGCAACTTCAG
18254173 AAAGATGAGA
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 24 0.44
45 30 0.56
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATCACTAGCTTCAGTCTGCC
Found at i:18254267 original size:45 final size:45
Alignment explanation
Indices: 18254058--18254586 Score: 299
Period size: 44 Copynumber: 11.7 Consensus size: 45
18254048 AATTCATCGT
* * * *
18254058 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAG-TAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATC
* * * ***
18254102 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTCACTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATC
* * * ** * * *
18254147 TTCAGTCTGCCCCACTGCAACTTCAGAAAGATGAGATCTGTTATGATAGA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-T-T-AT--C
* * * * *
18254197 TTTAATCTGTTCCATTGAAATTTCAGGGAAATAAGATTTGTTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATC
* *** *
18254242 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCAT-
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATC
* * * * * *
18254286 TTTAATCCGCTCAACTGCAACTTCAGGGAGGTAGGATTAG-TAAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATC
* * * *
18254330 TTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTG-TATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATC
* * * *
18254374 TTCAA-CTTGCCCCACTACAACTTCATGGG-GATAAGGTTTGTTAT-
1 TTTAATC-TGCTCCACTGCAACTTCA-GGGAGATAAGATTTGTTATC
* * * * *
18254418 TTCAACCTGCTCTATTGCAACTTCAGAGAGATAA-AGTTTG--A--
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTGTTATC
* * * * ** * *
18254459 TATGATCTGCTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTA---T--C
* * * * *
18254509 TTTAATTTGTTCCACTGCAACTTCAGGGAAATACGATTTGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATC
**
18254554 TTTAATCTAATCCACTGCAACTTCAGGGAGATA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATA
18254587 GGATCCATCA
Statistics
Matches: 368, Mismatches: 94, Indels: 45
0.73 0.19 0.09
Matches are distributed among these distances:
41 30 0.08
42 2 0.01
43 5 0.01
44 159 0.43
45 105 0.29
47 4 0.01
48 3 0.01
49 1 0.00
50 59 0.16
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (45 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATC
Found at i:18254924 original size:44 final size:44
Alignment explanation
Indices: 18254787--18254925 Score: 115
Period size: 44 Copynumber: 3.1 Consensus size: 44
18254777 TCAGTTATTC
* *
18254787 CGCTGCAAACTCAGGGAGGTGAGGCTAGTGTCTTCGATCTGCTT
1 CGCTGTAAACTCAGAGAGGTGAGGCTAGTGTCTTCGATCTGCTT
* *** * * *
18254831 CGCTGCTAATAC-AAGA-AGACAAGATCTACTATCTTC-AGTCTG-TT
1 CGCTG-TAA-ACTCAGAGAGGTGAG-GCTAGTGTCTTCGA-TCTGCTT
*
18254875 CCGCTGTAAACTCAGAGAGGTGAGGCTGGTGTCTTCGATCTGCTT
1 -CGCTGTAAACTCAGAGAGGTGAGGCTAGTGTCTTCGATCTGCTT
18254920 CGCTGT
1 CGCTGT
18254926 CGGTACAGAA
Statistics
Matches: 69, Mismatches: 17, Indels: 18
0.66 0.16 0.17
Matches are distributed among these distances:
43 2 0.03
44 36 0.52
45 29 0.42
46 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.29
Consensus pattern (44 bp):
CGCTGTAAACTCAGAGAGGTGAGGCTAGTGTCTTCGATCTGCTT
Found at i:18255102 original size:44 final size:44
Alignment explanation
Indices: 18255054--18255369 Score: 164
Period size: 44 Copynumber: 7.1 Consensus size: 44
18255044 CAGTCTACTC
* *
18255054 CGCTGCAAACTTAGGGAGGCGAGGCTGGTGTCTTCGATCTGCTT
1 CGCTGCAAACTTAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTT
* * * * * *
18255098 CGCTGCTAA-TATAGGAAGACAAGGTCTGCTATCTT-TAGTCT-ATT
1 CGCTGCAAACT-TAGGAAGGCAAGG-CTGGTGTCTTCGA-TCTGCTT
* ** * *
18255142 CCGCTGCAAACTCAAGG-AGGTGAGGCTGGTGCCTTCGATCTACTT
1 -CGCTGCAAACT-TAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTT
* * * * *
18255187 CGCTGCTAATAC--AGGAAGACAAGATCTGCTATCTTCAATCTG-TT
1 CGCTGC-AA-ACTTAGGAAGGCAAG-GCTGGTGTCTTCGATCTGCTT
* * * *
18255231 CTGCTGCAAAATTAGGGAGGCGAGGTTGGTGTCTTCGATCTGCTT
1 C-GCTGCAAACTTAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTT
* * * * * * *
18255276 CACTGCTAATAC--AGGAAGACAAGATCTGTTATCTTCAATCTGCTC
1 CGCTGC-AA-ACTTAGGAAGGCAAG-GCTGGTGTCTTCGATCTGCTT
* * * *
18255321 CACTGTAAACTCAGGAAGGTAAGGCTGGTGTCTTCGATCTGCTT
1 CGCTGCAAACTTAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTT
18255365 CGCTG
1 CGCTG
18255370 TTAGTACAAG
Statistics
Matches: 195, Mismatches: 57, Indels: 40
0.67 0.20 0.14
Matches are distributed among these distances:
43 7 0.04
44 93 0.48
45 88 0.45
46 7 0.04
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (44 bp):
CGCTGCAAACTTAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTT
Found at i:18255180 original size:267 final size:266
Alignment explanation
Indices: 18254640--18255488 Score: 1032
Period size: 267 Copynumber: 3.2 Consensus size: 266
18254630 AGGATTAGTA
* * * * * ** *
18254640 TCTTCGATCTGCTTCGCTGTCGGTATAGCAAGATAATATCTGCTATCTTCAGTCTGCTCCACTAC
1 TCTTCGATCTACTTCGCTGTCGGTACAGAAAGACAAAATCTGCTATCTTCAGTCTGCTCTGCTGC
18254705 AAACTTAGGGAGGCGAGGCTGGTGTCTTTGATCTGCTTCGCTG-TCAATATAGGAAGACAAGATC
66 AAACTTAGGGAGGCGAGGC-GGTGTCTTTGATCTGCTTCGCTGCT-AATATAGGAAGACAAGATC
* * * *
18254769 TACTATTTTCAGT-TATTCCGCTGCAAACTCAGGGAGGTGAGGCTAGTGTCTTCGATCTGCTTCG
129 TTCTATCTTCAGTCTACTCCGCTGCAAACTCAGGGAGGTGAGGCTGGTGTCTTCGATCTGCTTCG
* * *
18254833 CTGCTAATACAAGAAGACAAGATCTACTATCTTCAGTCTGTTCCGCTGTAAACTC-AGAGAGGTG
194 CTGCTAATACAAGAAGACAAGGTCTGCTATCTTCAGTCTGTTCCGCTGCAAACTCAAG-GAGGTG
18254897 AGGCTGGTG
258 AGGCTGGTG
* * *
18254906 TCTTCGATCTGCTTCGCTGTCGGTACAGAAAGACAACATCTGCTATCTTCAGTCTGCTCTGCTGT
1 TCTTCGATCTACTTCGCTGTCGGTACAGAAAGACAAAATCTGCTATCTTCAGTCTGCTCTGCTGC
* * *
18254971 AAACTCAGGGAGGCGAGGCGAGTGTTTTTGATCTGCTTCGCTGCTAATATAGGATGACAAGATCT
66 AAACTTAGGGAGGCGAGGCG-GTGTCTTTGATCTGCTTCGCTGCTAATATAGGAAGACAAGATCT
* *
18255036 TCTATCTTCAGTCTACTCCGCTGCAAACTTAGGGAGGCGAGGCTGGTGTCTTCGATCTGCTTCGC
130 TCTATCTTCAGTCTACTCCGCTGCAAACTCAGGGAGGTGAGGCTGGTGTCTTCGATCTGCTTCGC
* * * *
18255101 TGCTAATATAGGAAGACAAGGTCTGCTATCTTTAGTCTATTCCGCTGCAAACTCAAGGAGGTGAG
195 TGCTAATACAAGAAGACAAGGTCTGCTATCTTCAGTCTGTTCCGCTGCAAACTCAAGGAGGTGAG
18255166 GCTGGTG
260 GCTGGTG
* ** * * * *
18255173 CCTTCGATCTACTTCGCTG-CTAATACAGGAAGACAAGATCTGCTATCTTCAATCTGTTCTGCTG
1 TCTTCGATCTACTTCGCTGTC-GGTACAGAAAGACAAAATCTGCTATCTTCAGTCTGCTCTGCTG
* * * * *
18255237 CAAAATTAGGGAGGCGAGGTTGGTGTCTTCGATCTGCTTCACTGCTAATACAGGAAGACAAGATC
65 CAAACTTAGGGAGGCGAGG-CGGTGTCTTTGATCTGCTTCGCTGCTAATATAGGAAGACAAGATC
* * * * * *
18255302 TGT-TATCTTCAATCTGCTCCACTGTAAACTCAGGAAGGTAAGGCTGGTGTCTTCGATCTGCTTC
129 T-TCTATCTTCAGTCTACTCCGCTGCAAACTCAGGGAGGTGAGGCTGGTGTCTTCGATCTGCTTC
* * * * * *
18255366 GCTGTTAGTACAAGAAGGC-AGGATCTGCTATCTTCAGTCTGCTCCACTGTC--AGT-ACAGGAA
193 GCTGCTAATACAAGAAGACAAGG-TCTGCTATCTTCAGTCTGTTCCGCTG-CAAACTCA-AGG-A
**
18255427 GGCAAGGCTGGTG
254 GGTGAGGCTGGTG
* * *
18255440 TCTTCGATCTACTTCGCTGTCGGTACAAAAAGGCAAAATATGCTATCTT
1 TCTTCGATCTACTTCGCTGTCGGTACAGAAAGACAAAATCTGCTATCTT
18255489 TGATCTGCTT
Statistics
Matches: 502, Mismatches: 69, Indels: 23
0.85 0.12 0.04
Matches are distributed among these distances:
265 2 0.00
266 134 0.27
267 360 0.72
268 6 0.01
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (266 bp):
TCTTCGATCTACTTCGCTGTCGGTACAGAAAGACAAAATCTGCTATCTTCAGTCTGCTCTGCTGC
AAACTTAGGGAGGCGAGGCGGTGTCTTTGATCTGCTTCGCTGCTAATATAGGAAGACAAGATCTT
CTATCTTCAGTCTACTCCGCTGCAAACTCAGGGAGGTGAGGCTGGTGTCTTCGATCTGCTTCGCT
GCTAATACAAGAAGACAAGGTCTGCTATCTTCAGTCTGTTCCGCTGCAAACTCAAGGAGGTGAGG
CTGGTG
Found at i:18255317 original size:45 final size:45
Alignment explanation
Indices: 18255174--18255566 Score: 185
Period size: 45 Copynumber: 8.8 Consensus size: 45
18255164 AGGCTGGTGC
* * * *
18255174 CTTCGATCTACTTCGCTGCTAATACAGGAAGACAAGATCTGCTAT
1 CTTCAATCTGCTTCACTGCTAATACAGGAAGGCAAGATCTGCTAT
* * * * * * * *
18255219 CTTCAATCTG-TTCTGCTGC-AAAATTAGGGAGGCGAGGT-TGGTGT
1 CTTCAATCTGCTTC-ACTGCTAATA-CAGGAAGGCAAGATCTGCTAT
* * *
18255263 CTTCGATCTGCTTCACTGCTAATACAGGAAGACAAGATCTGTTAT
1 CTTCAATCTGCTTCACTGCTAATACAGGAAGGCAAGATCTGCTAT
* * * * *
18255308 CTTCAATCTGCTCCACTG-TAA-ACTCAGGAAGGTAAG-GCTGGTGT
1 CTTCAATCTGCTTCACTGCTAATA--CAGGAAGGCAAGATCTGCTAT
* * * * * *
18255352 CTTCGATCTGCTTCGCTGTTAGTACAAGAAGGCAGGATCTGCTAT
1 CTTCAATCTGCTTCACTGCTAATACAGGAAGGCAAGATCTGCTAT
* * * * * *
18255397 CTTCAGTCTGCTCCACTG-TCAGTACAGGAAGGCAAG-GCTGGTGT
1 CTTCAATCTGCTTCACTGCT-AATACAGGAAGGCAAGATCTGCTAT
* * * ** ** * *
18255441 CTTCGATCTACTTCGCTG-TCGGTACAAAAAGGCAAAATATGCTAT
1 CTTCAATCTGCTTCACTGCT-AATACAGGAAGGCAAGATCTGCTAT
** * * *
18255486 CTTTGATCTGCTTCACTG-TCAGTACAAGAAGGCAAAATCTGCTAT
1 CTTCAATCTGCTTCACTGCT-AATACAGGAAGGCAAGATCTGCTAT
* * * * * *
18255531 CTTCAGTCTGCTCCGCTACCAGTACAGGAAGGCAAG
1 CTTCAATCTGCTTCACTGCTAATACAGGAAGGCAAG
18255567 GCTGGATATG
Statistics
Matches: 261, Mismatches: 74, Indels: 26
0.72 0.20 0.07
Matches are distributed among these distances:
43 1 0.00
44 97 0.37
45 162 0.62
46 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (45 bp):
CTTCAATCTGCTTCACTGCTAATACAGGAAGGCAAGATCTGCTAT
Found at i:18255415 original size:89 final size:89
Alignment explanation
Indices: 18254640--18255458 Score: 914
Period size: 89 Copynumber: 9.2 Consensus size: 89
18254630 AGGATTAGTA
** * * * * * *
18254640 TCTTCGATCTGCTTCGCTG-TCGGTATAGCAAGATAATATCTGCTATCTTCAGTCTGCTCCACTA
1 TCTTCGATCTGCTTCGCTGCT-AATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTG
*
18254704 CAAACTTAGGGAGGCGAGGCTGGTG
65 CAAACTCAGGGAGGCGAGGCTGGTG
* * * * **
18254729 TCTTTGATCTGCTTCGCTG-TCAATATAGGAAGACAAGATCTACTATTTTCAGT-TATTCCGCTG
1 TCTTCGATCTGCTTCGCTGCT-AATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTG
* *
18254792 CAAACTCAGGGAGGTGAGGCTAGTG
65 CAAACTCAGGGAGGCGAGGCTGGTG
* * * *
18254817 TCTTCGATCTGCTTCGCTGCTAATACAAGAAGACAAGATCTACTATCTTCAGTCTGTTCCGCTGT
1 TCTTCGATCTGCTTCGCTGCTAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGC
* *
18254882 AAACTCAGAGAGGTGAGGCTGGTG
66 AAACTCAGGGAGGCGAGGCTGGTG
** * * *
18254906 TCTTCGATCTGCTTCGCTG-TCGGTACAGAAAGACAACATCTGCTATCTTCAGTCTGCTCTGCTG
1 TCTTCGATCTGCTTCGCTGCT-AATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTG
*
18254970 TAAACTCAGGGAGGCGAGGC-GAGTG
65 CAAACTCAGGGAGGCGAGGCTG-GTG
* * * * * *
18254995 TTTTTGATCTGCTTCGCTGCTAATATAGGATGACAAGATCTTCTATCTTCAGTCTACTCCGCTGC
1 TCTTCGATCTGCTTCGCTGCTAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGC
*
18255060 AAACTTAGGGAGGCGAGGCTGGTG
66 AAACTCAGGGAGGCGAGGCTGGTG
* * * **
18255084 TCTTCGATCTGCTTCGCTGCTAATATAGGAAGACAAGGTCTGCTATCTTTAGTCTATTCCGCTGC
1 TCTTCGATCTGCTTCGCTGCTAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGC
* *
18255149 AAACTCAAGGAGGTGAGGCTGGTG
66 AAACTCAGGGAGGCGAGGCTGGTG
* * * * *
18255173 CCTTCGATCTACTTCGCTGCTAATACAGGAAGACAAGATCTGCTATCTTCAATCTGTTCTGCTGC
1 TCTTCGATCTGCTTCGCTGCTAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGC
* * *
18255238 AAAATTAGGGAGGCGAGGTTGGTG
66 AAACTCAGGGAGGCGAGGCTGGTG
* * * * *
18255262 TCTTCGATCTGCTTCACTGCTAATACAGGAAGACAAGATCTGTTATCTTCAATCTGCTCCACTGT
1 TCTTCGATCTGCTTCGCTGCTAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGC
* **
18255327 AAACTCAGGAAGGTAAGGCTGGTG
66 AAACTCAGGGAGGCGAGGCTGGTG
* * * * * *
18255351 TCTTCGATCTGCTTCGCTGTTAGTACAAGAAGGCAGGATCTGCTATCTTCAGTCTGCTCCACTGT
1 TCTTCGATCTGCTTCGCTGCTAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTG-
* * *
18255416 C--AGTACAGGAAGGCAAGGCTGGTG
65 CAAACT-CAGGGAGGCGAGGCTGGTG
*
18255440 TCTTCGATCTACTTCGCTG
1 TCTTCGATCTGCTTCGCTG
18255459 TCGGTACAAA
Statistics
Matches: 627, Mismatches: 95, Indels: 16
0.85 0.13 0.02
Matches are distributed among these distances:
88 79 0.13
89 546 0.87
90 2 0.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (89 bp):
TCTTCGATCTGCTTCGCTGCTAATACAGGAAGACAAGATCTGCTATCTTCAGTCTGCTCCGCTGC
AAACTCAGGGAGGCGAGGCTGGTG
Found at i:18263185 original size:18 final size:18
Alignment explanation
Indices: 18263159--18263206 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
18263149 AATAGTTACA
*
18263159 AATATTGATACAGATACG
1 AATACTGATACAGATACG
**
18263177 AATACTGATATTGATACG
1 AATACTGATACAGATACG
*
18263195 AATACAGATACA
1 AATACTGATACA
18263207 AATCCTACCT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (18 bp):
AATACTGATACAGATACG
Found at i:18265882 original size:43 final size:41
Alignment explanation
Indices: 18265816--18265950 Score: 153
Period size: 43 Copynumber: 3.2 Consensus size: 41
18265806 TTTTAAAAAT
18265816 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGA-CA-GACCTTTAGCGGCGCTTTTCCCAC
* *
18265859 AAACGCCGCTATAGATCGAGACCTTTAGCAGCGGTTTTCCCAC
1 AAACGCCGCTATAGA-C-AGACCTTTAGCGGCGCTTTTCCCAC
* * * * * *
18265902 AAGCGCCGCTATAGAACAAACCTTTAGCGACGCTTCTCGCAA
1 AAACGCCGCTATAG-ACAGACCTTTAGCGGCGCTTTTCCCAC
18265944 AAACGCC
1 AAACGCC
18265951 ACTGAAAACA
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
42 24 0.31
43 52 0.67
44 2 0.03
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (41 bp):
AAACGCCGCTATAGACAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:18267457 original size:5 final size:5
Alignment explanation
Indices: 18267447--18267477 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
18267437 ACTTGGTTTG
18267447 TATTT TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT TATTT T
18267478 CAAATTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:18270346 original size:15 final size:16
Alignment explanation
Indices: 18270293--18270405 Score: 52
Period size: 15 Copynumber: 6.3 Consensus size: 16
18270283 GAACACAAAT
18270293 TATTTTATTTAAACTAA
1 TATTTTATTTAAACT-A
*
18270310 TATTTAAATGTTTAAA-TA
1 TATTT---TATTTAAACTA
18270328 TATTTTATTTAAACTTA
1 TATTTTATTTAAAC-TA
18270345 TTTATTAATTCTATTTAAACTAA
1 --TA-T--TT-TATTTAAACT-A
*
18270368 TATTTAAATGTTTAAA-TA
1 TATTT---TATTTAAACTA
18270386 TATTTTATTTAAACT-
1 TATTTTATTTAAACTA
18270401 TATTT
1 TATTT
18270406 ATTAATTCTA
Statistics
Matches: 76, Mismatches: 5, Indels: 32
0.67 0.04 0.28
Matches are distributed among these distances:
15 19 0.25
16 1 0.01
17 7 0.09
18 14 0.18
19 4 0.05
20 16 0.21
21 2 0.03
22 3 0.04
23 10 0.13
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.55
Consensus pattern (16 bp):
TATTTTATTTAAACTA
Found at i:18270361 original size:58 final size:58
Alignment explanation
Indices: 18270298--18270434 Score: 258
Period size: 58 Copynumber: 2.4 Consensus size: 58
18270288 CAAATTATTT
18270298 TATTTAAACTAATATTTAAATGTTTAAATATATTTTATTTAAACTTATTTATTAATTC
1 TATTTAAACTAATATTTAAATGTTTAAATATATTTTATTTAAACTTATTTATTAATTC
18270356 TATTTAAACTAATATTTAAATGTTTAAATATATTTTATTTAAACTTATTTATTAATTC
1 TATTTAAACTAATATTTAAATGTTTAAATATATTTTATTTAAACTTATTTATTAATTC
18270414 TATTT-AACTTAATATTTAAAT
1 TATTTAAAC-TAATATTTAAAT
18270435 ATATCAAATG
Statistics
Matches: 78, Mismatches: 0, Indels: 2
0.98 0.00 0.03
Matches are distributed among these distances:
57 3 0.04
58 75 0.96
ACGTcount: A:0.40, C:0.05, G:0.01, T:0.53
Consensus pattern (58 bp):
TATTTAAACTAATATTTAAATGTTTAAATATATTTTATTTAAACTTATTTATTAATTC
Found at i:18270456 original size:58 final size:58
Alignment explanation
Indices: 18270298--18270456 Score: 196
Period size: 58 Copynumber: 2.7 Consensus size: 58
18270288 CAAATTATTT
* * * *
18270298 TATTTAAACTAATATTTAAATGTTTAAATATATTTTATTTAAACTTATTTATTAATTC
1 TATTTAAACTAATATTTAAATATATAAATATAGTTTAATTAAACTTATTTATTAATTC
* * * *
18270356 TATTTAAACTAATATTTAAATGTTTAAATATATTTTATTTAAACTTATTTATTAATTC
1 TATTTAAACTAATATTTAAATATATAAATATAGTTTAATTAAACTTATTTATTAATTC
* *
18270414 TATTT-AACTTAATATTTAAATATATCAA-ATGGTTTAGATTAAA
1 TATTTAAAC-TAATATTTAAATATATAAATATAGTTTA-ATTAAA
18270457 TTTTTTTTAA
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
57 9 0.10
58 84 0.90
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (58 bp):
TATTTAAACTAATATTTAAATATATAAATATAGTTTAATTAAACTTATTTATTAATTC
Found at i:18270753 original size:15 final size:15
Alignment explanation
Indices: 18270720--18270761 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
18270710 CCCTAACTCT
**
18270720 TAACCCCT-AACATC
1 TAACCCCTAAACCCC
18270734 TAACCCCTAAACCCC
1 TAACCCCTAAACCCC
*
18270749 TAACCCTTAAACC
1 TAACCCCTAAACC
18270762 ATAATCCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.36, C:0.45, G:0.00, T:0.19
Consensus pattern (15 bp):
TAACCCCTAAACCCC
Found at i:18270770 original size:7 final size:7
Alignment explanation
Indices: 18270760--18270793 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
18270750 AACCCTTAAA
18270760 CCATAAT
1 CCATAAT
18270767 CCATAAT
1 CCATAAT
18270774 CCATAAT
1 CCATAAT
*
18270781 CCCTAAAT
1 CCAT-AAT
18270789 CCATA
1 CCATA
18270794 CTCTCTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.26
Consensus pattern (7 bp):
CCATAAT
Found at i:18270802 original size:15 final size:15
Alignment explanation
Indices: 18270692--18270793 Score: 56
Period size: 14 Copynumber: 7.1 Consensus size: 15
18270682 TCGACCCCTG
*
18270692 AATCCCTAAA-CCTAA
1 AATCCCTAAATCC-AT
* *
18270707 AATCCCTAACT-CTT
1 AATCCCTAAATCCAT
*
18270721 AACCCCTAACAT-C-T
1 AATCCCTAA-ATCCAT
* * *
18270735 AACCCCTAAACCCCT
1 AATCCCTAAATCCAT
18270750 AA-CCCTTAAA-CCAT
1 AATCCC-TAAATCCAT
*
18270764 AATCCAT-AATCCAT
1 AATCCCTAAATCCAT
18270778 AATCCCTAAATCCAT
1 AATCCCTAAATCCAT
18270793 A
1 A
18270794 CTCTCTAAAC
Statistics
Matches: 70, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
13 3 0.04
14 38 0.54
15 29 0.41
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (15 bp):
AATCCCTAAATCCAT
Found at i:18271053 original size:7 final size:7
Alignment explanation
Indices: 18271041--18271074 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
18271031 AACAATTAAA
18271041 CCATAAT
1 CCATAAT
18271048 CCATAAT
1 CCATAAT
18271055 CCATAAT
1 CCATAAT
*
18271062 CCCTAAAT
1 CCAT-AAT
18271070 CCATA
1 CCATA
18271075 CTCCCTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.26
Consensus pattern (7 bp):
CCATAAT
Found at i:18271058 original size:14 final size:15
Alignment explanation
Indices: 18271037--18271074 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
18271027 TCCGAACAAT
18271037 TAAA-CCATAATCCA
1 TAAATCCATAATCCA
*
18271051 T-AATCCATAATCCC
1 TAAATCCATAATCCA
18271065 TAAATCCATA
1 TAAATCCATA
18271075 CTCCCTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCCA
Found at i:18271072 original size:15 final size:15
Alignment explanation
Indices: 18271037--18271083 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
18271027 TCCGAACAAT
*
18271037 TAAA-CCATAATCCA
1 TAAATCCATAATCCC
18271051 T-AATCCATAATCCC
1 TAAATCCATAATCCC
*
18271065 TAAATCCATACTCCC
1 TAAATCCATAATCCC
18271080 TAAA
1 TAAA
18271084 CCTTAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.38
15 16 0.55
ACGTcount: A:0.43, C:0.32, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:18271090 original size:22 final size:22
Alignment explanation
Indices: 18271037--18271090 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
18271027 TCCGAACAAT
18271037 TAAACCAT-AATCCATAATCCA
1 TAAACCATAAATCCATAATCCA
* * * *
18271058 TAATCCCTAAATCCATACTCCC
1 TAAACCATAAATCCATAATCCA
*
18271080 TAAACCTTAAA
1 TAAACCATAAA
18271091 ATAATAACTC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.43, C:0.31, G:0.00, T:0.26
Consensus pattern (22 bp):
TAAACCATAAATCCATAATCCA
Found at i:18271121 original size:281 final size:276
Alignment explanation
Indices: 18270622--18271156 Score: 767
Period size: 281 Copynumber: 1.9 Consensus size: 276
18270612 TTTCAATTAT
* * *
18270622 ATAAGAACATATTTAAAATATAAATTAAAAAAATAATTAATCTAAACCTAAAACCCTAGCTCGAC
1 ATAAGAACATATTTAAAATATAAATTAAAAAAATAATTAATATAAACCT-AAACCCTAACCCGAC
* *
18270687 CCCTGAATCCCTAAACCTAAAATCCCTAACTCTTAACCCCTAACATCTAACCCCTAAACCCCTAA
65 CCCTAAATCCCTAAACCTAAAATCCCTAACTCTTAACCCCTAACACCTAACCCCTAAACCCCTAA
*
18270752 CCCTTAAACCATAATCCATAATCCATAATCCCTAAATCCATACTCTCTAAACCTTAAAATATAAA
130 CCCTTAAACCATAATCCATAATCCATAATCCCTAAATCCATACTCCCTAAACCTTAAAATATAAA
* *
18270817 CTCCTAAACCGGCCTTAAATCTTAAATTAATCATATACCCTAAACTAAAAA-CCATAAACAAAAT
195 CTCCTAAACCGGCCTTAAATCTTAAATAAATCATATACCCTAAACCAAAAATCC-TAAACAAAAT
18270881 TATAATGATCTCTTTTAC
259 TATAATGATCTCTTTTAC
18270899 ATAAGAACATATTTAAAATATAAATT-AAAAAATAATTAATATAAACCCT-AACCCTAACCCGAC
1 ATAAGAACATATTTAAAATATAAATTAAAAAAATAATTAATATAAA-CCTAAACCCTAACCCGAC
** * ** * *
18270962 CCCTAAATCTTTAAACCTTAAATCCCTAACGTC-TAACGTCTAACCCCTAACCCCTAAA-CCTTA
65 CCCTAAATCCCTAAACCTAAAATCCCTAAC-TCTTAACCCCTAACACCTAACCCCTAAACCCCT-
18271025 AATCCGAACAATTAAACCATAATCCATAATCCATAATCCCTAAATCCATACTCCCTAAACCTTAA
128 AA-CC---C--TTAAACCATAATCCATAATCCATAATCCCTAAATCCATACTCCCTAAACCTTAA
* *
18271090 AATA-ATAACTCCTAAATCGGCCTTAAATCTTAAATAAATCATATACTCTAAACCAAAAATCCTA
187 AATATA-AACTCCTAAACCGGCCTTAAATCTTAAATAAATCATATACCCTAAACCAAAAATCCTA
18271154 AAC
251 AAC
18271157 TATAGTGATA
Statistics
Matches: 230, Mismatches: 17, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
274 3 0.01
275 61 0.27
276 22 0.10
277 29 0.13
279 1 0.00
280 1 0.00
281 111 0.48
282 2 0.01
ACGTcount: A:0.44, C:0.27, G:0.03, T:0.26
Consensus pattern (276 bp):
ATAAGAACATATTTAAAATATAAATTAAAAAAATAATTAATATAAACCTAAACCCTAACCCGACC
CCTAAATCCCTAAACCTAAAATCCCTAACTCTTAACCCCTAACACCTAACCCCTAAACCCCTAAC
CCTTAAACCATAATCCATAATCCATAATCCCTAAATCCATACTCCCTAAACCTTAAAATATAAAC
TCCTAAACCGGCCTTAAATCTTAAATAAATCATATACCCTAAACCAAAAATCCTAAACAAAATTA
TAATGATCTCTTTTAC
Found at i:18271633 original size:41 final size:41
Alignment explanation
Indices: 18271434--18271628 Score: 327
Period size: 41 Copynumber: 4.8 Consensus size: 41
18271424 TAAAAAGCTT
* *
18271434 TTAGCGGCGCTTTTTCAAAAACGCTGCTAAATCCTAGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCAGAGCA
*
18271475 TTAGCGGCGCTATTTCAAAAACGCCGCTAAATCCCAGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCAGAGCA
*
18271516 TTAGCGGCGCTATTTCAAAAACGCCGCTAAATCCCAGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCAGAGCA
* *
18271557 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCAGAGCA
*
18271598 TTAGCGGCGCTTTTTCAAAAATGCCGCTAAA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
18271629 GCCCCAAAAG
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 147 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCAGAGCA
Found at i:18272818 original size:30 final size:30
Alignment explanation
Indices: 18272784--18272886 Score: 102
Period size: 30 Copynumber: 3.4 Consensus size: 30
18272774 TTAATTACAT
*
18272784 TAATATTAAATGAATAAAATATTATATAGA
1 TAATATTAAATTAATAAAATATTATATAGA
** * *
18272814 TAATATTAAATTTAATTTAATA-TACCATA-T
1 TAATATTAAA-TTAATAAAATATTA-TATAGA
* *
18272844 TAATACTAAATTAATAAAATATTATCTAGA
1 TAATATTAAATTAATAAAATATTATATAGA
18272874 TAAATATTAAATT
1 T-AATATTAAATT
18272887 TAATTTAATA
Statistics
Matches: 56, Mismatches: 12, Indels: 9
0.73 0.16 0.12
Matches are distributed among these distances:
29 11 0.20
30 24 0.43
31 21 0.38
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (30 bp):
TAATATTAAATTAATAAAATATTATATAGA
Found at i:18272846 original size:60 final size:61
Alignment explanation
Indices: 18272782--18272897 Score: 198
Period size: 60 Copynumber: 1.9 Consensus size: 61
18272772 AATTAATTAC
*
18272782 ATTAATATTAAATGAATAAAATATTATATAGAT-AATATTAAATTTAATTTAATATACCAT
1 ATTAATACTAAATGAATAAAATATTATATAGATAAATATTAAATTTAATTTAATATACCAT
* *
18272842 ATTAATACTAAATTAATAAAATATTATCTAGATAAATATTAAATTTAATTTAATAT
1 ATTAATACTAAATGAATAAAATATTATATAGATAAATATTAAATTTAATTTAATAT
18272898 TAAATTCATT
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
60 30 0.58
61 22 0.42
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (61 bp):
ATTAATACTAAATGAATAAAATATTATATAGATAAATATTAAATTTAATTTAATATACCAT
Found at i:18275795 original size:39 final size:39
Alignment explanation
Indices: 18275736--18275814 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
18275726 TACTAATAAA
* * *
18275736 TTGCTTTTATTGATCCATATAGATATCAATGATGGATAG
1 TTGCTTTTATTAATCAATATAGATATCAATGATCGATAG
18275775 TTGCTTTTATTAATCAATATAGATATCAATGATCGATAG
1 TTGCTTTTATTAATCAATATAGATATCAATGATCGATAG
18275814 T
1 T
18275815 AAAACATTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (39 bp):
TTGCTTTTATTAATCAATATAGATATCAATGATCGATAG
Found at i:18278257 original size:2 final size:2
Alignment explanation
Indices: 18278250--18278284 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
18278240 AGCATTGTTT
18278250 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18278285 GTTGTAGAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:18282006 original size:30 final size:30
Alignment explanation
Indices: 18281950--18282014 Score: 71
Period size: 31 Copynumber: 2.2 Consensus size: 30
18281940 TAGAGGATTC
** *
18281950 ATTTTTTCTCACTTTATCTTTTTTTTTTGAA
1 ATTTTTTCTCACTTTATCTTAATTTTTAG-A
18281981 ATTTTTATCT-ACTTTAT-TTAATTTTTAGA
1 ATTTTT-TCTCACTTTATCTTAATTTTTAGA
18282010 ATTTT
1 ATTTT
18282015 CTAAATTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 6 0.20
30 8 0.27
31 13 0.43
32 3 0.10
ACGTcount: A:0.22, C:0.09, G:0.03, T:0.66
Consensus pattern (30 bp):
ATTTTTTCTCACTTTATCTTAATTTTTAGA
Found at i:18294408 original size:91 final size:91
Alignment explanation
Indices: 18294253--18294436 Score: 280
Period size: 91 Copynumber: 2.0 Consensus size: 91
18294243 GTATAAGATA
*
18294253 AAGATAATCTCAACAAATAAACCCTAAATCTCAAAAGAACAAAGTACTCTAAATAAAATCCAAAA
1 AAGATAATCTCAACAAATAAACCCTAAATCTCAAAAGAACAAAGTACTCTAAATAAAACCCAAAA
* *
18294318 TTCCCCAAAATTCACAGAATTCCCTT
66 TTCCCCAAAACTCACAAAATTCCCTT
* * *
18294344 AAGATAATCTCAACAAATAAA-TCTGAAATCTCGAAAGAACAAAGTACTCTAACTAAAACCCAAA
1 AAGATAATCTCAACAAATAAACCCT-AAATCTCAAAAGAACAAAGTACTCTAAATAAAACCCAAA
* *
18294408 ATTCCCCAGAACTCACAAAATTCTCTT
65 ATTCCCCAAAACTCACAAAATTCCCTT
18294435 AA
1 AA
18294437 TCTCATAGAT
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
90 2 0.02
91 82 0.98
ACGTcount: A:0.49, C:0.24, G:0.05, T:0.22
Consensus pattern (91 bp):
AAGATAATCTCAACAAATAAACCCTAAATCTCAAAAGAACAAAGTACTCTAAATAAAACCCAAAA
TTCCCCAAAACTCACAAAATTCCCTT
Found at i:18295994 original size:6 final size:6
Alignment explanation
Indices: 18295983--18296014 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
18295973 TTGCATCACC
18295983 CTGTCT CTGTCT CTGTCT CTGTCT CTGTCT CT
1 CTGTCT CTGTCT CTGTCT CTGTCT CTGTCT CT
18296015 CGCTTGCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.16, T:0.50
Consensus pattern (6 bp):
CTGTCT
Found at i:18301423 original size:22 final size:23
Alignment explanation
Indices: 18301392--18301467 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 23
18301382 AACTAATCTT
* *
18301392 CTCTCAAATTTCATCTCATTTTC
1 CTCTCAAATTTCATCTCAATTTA
*
18301415 CTCT-AAATTTCCTCTCAATTTA
1 CTCTCAAATTTCATCTCAATTTA
* *
18301437 CTCTCAAATTCCTTC-CAAATTT-
1 CTCTCAAATTTCATCTC-AATTTA
18301459 CTCTCAAAT
1 CTCTCAAAT
18301468 CCATATTTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
22 29 0.63
23 17 0.37
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.43
Consensus pattern (23 bp):
CTCTCAAATTTCATCTCAATTTA
Found at i:18301442 original size:33 final size:33
Alignment explanation
Indices: 18301390--18301465 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
18301380 CAAACTAATC
** *
18301390 TTCTCTCAAATTTCATCTCATTTTCC-TCTAAAT
1 TTCTCTC-AATTTCATCTCAAATTCCTTCCAAAT
18301423 TTCCTCTCAATTT-ACTCTCAAATTCCTTCCAAAT
1 TT-CTCTCAATTTCA-TCTCAAATTCCTTCCAAAT
18301457 TTCTCTCAA
1 TTCTCTCAA
18301466 ATCCATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
32 1 0.03
33 23 0.62
34 13 0.35
ACGTcount: A:0.25, C:0.30, G:0.00, T:0.45
Consensus pattern (33 bp):
TTCTCTCAATTTCATCTCAAATTCCTTCCAAAT
Found at i:18301466 original size:11 final size:11
Alignment explanation
Indices: 18301390--18301467 Score: 65
Period size: 11 Copynumber: 7.0 Consensus size: 11
18301380 CAAACTAATC
18301390 TTCTCTCAAAT
1 TTCTCTCAAAT
*
18301401 TTCATCTC-ATT
1 TTC-TCTCAAAT
18301412 TTC-CTCTAAAT
1 TTCTCTC-AAAT
18301423 TTCCTCTC-AAT
1 TT-CTCTCAAAT
18301434 TTACTCTCAAAT
1 TT-CTCTCAAAT
*
18301446 TCCT-TCCAAAT
1 TTCTCT-CAAAT
18301457 TTCTCTCAAAT
1 TTCTCTCAAAT
18301468 CCATATTTAA
Statistics
Matches: 54, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
9 3 0.06
10 1 0.02
11 37 0.69
12 10 0.19
13 3 0.06
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:18301485 original size:51 final size:51
Alignment explanation
Indices: 18301427--18301526 Score: 123
Period size: 51 Copynumber: 2.0 Consensus size: 51
18301417 CTAAATTTCC
18301427 TCTCAATTTACTCTCAAATTCCT-TCCAAATTTCTCTCAAA-TCCATATTTAA
1 TCTCAATTTACTCTCAAATTCCTCT-CAAATTTCTCTCAAATTCC-TATTTAA
* * * * *
18301478 TCTCAATTTGCTCTTAAGTTCCTCTTAAATTTCTCTTAAATTCCTATTT
1 TCTCAATTTACTCTCAAATTCCTCTCAAATTTCTCTCAAATTCCTATTT
18301527 TTAAATAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
51 38 0.90
52 4 0.10
ACGTcount: A:0.27, C:0.25, G:0.02, T:0.46
Consensus pattern (51 bp):
TCTCAATTTACTCTCAAATTCCTCTCAAATTTCTCTCAAATTCCTATTTAA
Found at i:18301502 original size:11 final size:11
Alignment explanation
Indices: 18301488--18301522 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
18301478 TCTCAATTTG
*
18301488 CTCTTAAGTTC
1 CTCTTAAATTC
*
18301499 CTCTTAAATTT
1 CTCTTAAATTC
18301510 CTCTTAAATTC
1 CTCTTAAATTC
18301521 CT
1 CT
18301523 ATTTTTAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.23, C:0.26, G:0.03, T:0.49
Consensus pattern (11 bp):
CTCTTAAATTC
Found at i:18302675 original size:7 final size:7
Alignment explanation
Indices: 18302663--18302688 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
18302653 TAGCCGATTG
18302663 GTATTTA
1 GTATTTA
18302670 GTATTTA
1 GTATTTA
18302677 GTATTTA
1 GTATTTA
18302684 GTATT
1 GTATT
18302689 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:18303142 original size:22 final size:22
Alignment explanation
Indices: 18303107--18303484 Score: 373
Period size: 21 Copynumber: 18.1 Consensus size: 22
18303097 NNNNNNNNNN
*
18303107 AAAA-CCTTAACCCTTAACTTA
1 AAAACCCTAAACCCTTAACTTA
18303128 AAAACCCTAAACCCTTAACTT-
1 AAAACCCTAAACCCTTAACTTA
*
18303149 AAAACCCTAAACCCTTAACCT-
1 AAAACCCTAAACCCTTAACTTA
18303170 --AA----AAACCCTTAACTTA
1 AAAACCCTAAACCCTTAACTTA
*
18303186 AAAACCCTA-ACACTTAACTTA
1 AAAACCCTAAACCCTTAACTTA
18303207 AAAACCCTAAACCCTTAACTTA
1 AAAACCCTAAACCCTTAACTTA
* **
18303229 AAAACCGT-AACCCTTAAAATA
1 AAAACCCTAAACCCTTAACTTA
* *
18303250 AATACCCTAAACCCTTAACTTT
1 AAAACCCTAAACCCTTAACTTA
*** * *
18303272 AAAATAGT-AACCCTTAAATAA
1 AAAACCCTAAACCCTTAACTTA
18303293 AAAACCCT-AACCCTTAACTTA
1 AAAACCCTAAACCCTTAACTTA
*
18303314 AAAACCCTTAACCCTTAACTTA
1 AAAACCCTAAACCCTTAACTTA
* *
18303336 AAAATCATAAACCCTTAACTT-
1 AAAACCCTAAACCCTTAACTTA
*
18303357 AAAACCCTAAATCCTTAACTTA
1 AAAACCCTAAACCCTTAACTTA
*
18303379 AAAACCCTAAATCCTTAACTT-
1 AAAACCCTAAACCCTTAACTTA
* *
18303400 --AACCTTAAACCCTTAACTTT
1 AAAACCCTAAACCCTTAACTTA
* * * *
18303420 AAAACCGT-AACTCTTAAATAA
1 AAAACCCTAAACCCTTAACTTA
*
18303441 AAAACCCT-AACACTTAACTTA
1 AAAACCCTAAACCCTTAACTTA
* *
18303462 AAAA-CCTTAACCCTAAACTTA
1 AAAACCCTAAACCCTTAACTTA
18303483 AA
1 AA
18303485 TATAATTTGA
Statistics
Matches: 297, Mismatches: 44, Indels: 32
0.80 0.12 0.09
Matches are distributed among these distances:
15 12 0.04
18 2 0.01
19 19 0.06
20 3 0.01
21 156 0.53
22 105 0.35
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (22 bp):
AAAACCCTAAACCCTTAACTTA
Found at i:18303167 original size:43 final size:42
Alignment explanation
Indices: 18303107--18303484 Score: 373
Period size: 43 Copynumber: 9.1 Consensus size: 42
18303097 NNNNNNNNNN
*
18303107 AAAACCTTAACCCTTAACTTAAAAACCCTAAACCCTTAACTT
1 AAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTT
* *
18303149 AAAACCCTAAACCCTTAACCTAAAAACCCTTAA--CTT-A---
1 AAAACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTT
*
18303186 AAAACCCTAACACTTAACTTAAAAACCCTAAACCCTTAACTT
1 AAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTT
* ** *
18303228 AAAAACCGTAACCCTTAAAATAAATACCCTAAACCCTTAACTTT
1 -AAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAAC-TT
*** * *
18303272 AAAATAGTAACCCTTAAATAAAAAACCCT-AACCCTTAACTT
1 AAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTT
* *
18303313 AAAAACCCTTAACCCTTAACTTAAAAATCATAAACCCTTAACTT
1 -AAAACCC-TAACCCTTAACTTAAAAACCCTAAACCCTTAACTT
* *
18303357 AAAACCCTAAATCCTTAACTTAAAAACCCTAAATCCTTAACTT
1 AAAACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTT
* * * * * *
18303400 --AACCTTAAACCCTTAACTTTAAAACCGT-AACTCTTAAATAA
1 AAAACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACT-T
* * *
18303441 AAAACCCTAACACTTAACTTAAAAA-CCTTAACCCTAAACTT
1 AAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTT
18303482 AAA
1 AAA
18303485 TATAATTTGA
Statistics
Matches: 276, Mismatches: 43, Indels: 35
0.78 0.12 0.10
Matches are distributed among these distances:
36 21 0.08
37 8 0.03
38 3 0.01
39 1 0.00
40 9 0.03
41 34 0.12
42 45 0.16
43 141 0.51
44 14 0.05
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (42 bp):
AAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTT
Found at i:18303176 original size:36 final size:36
Alignment explanation
Indices: 18303136--18303214 Score: 124
Period size: 36 Copynumber: 2.2 Consensus size: 36
18303126 TAAAAACCCT
*
18303136 AAACCCTTAACTT-AAAACCCTAAACCCTTAACCTAA
1 AAACCCTTAACTTAAAAACCCT-AACACTTAACCTAA
*
18303172 AAACCCTTAACTTAAAAACCCTAACACTTAACTTAA
1 AAACCCTTAACTTAAAAACCCTAACACTTAACCTAA
18303208 AAACCCT
1 AAACCCT
18303215 AAACCCTTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
36 32 0.80
37 8 0.20
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.23
Consensus pattern (36 bp):
AAACCCTTAACTTAAAAACCCTAACACTTAACCTAA
Found at i:18303196 original size:14 final size:15
Alignment explanation
Indices: 18303157--18303193 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
18303147 TTAAAACCCT
18303157 AAACCCTTAACCTAA
1 AAACCCTTAACCTAA
*
18303172 AAACCCTTAACTTAA
1 AAACCCTTAACCTAA
18303187 AAACCCT
1 AAACCCT
18303194 AACACTTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (15 bp):
AAACCCTTAACCTAA
Found at i:18303200 original size:16 final size:16
Alignment explanation
Indices: 18303157--18303202 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 16
18303147 TTAAAACCCT
18303157 AAACCCTTAAC-C-TAA
1 AAACCC-TAACACTTAA
*
18303172 AAACCCTTA-ACTTAA
1 AAACCCTAACACTTAA
18303187 AAACCCTAACACTTAA
1 AAACCCTAACACTTAA
18303203 CTTAAAAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 3 0.12
15 17 0.65
16 6 0.23
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (16 bp):
AAACCCTAACACTTAA
Found at i:18303211 original size:58 final size:58
Alignment explanation
Indices: 18303115--18303484 Score: 207
Period size: 65 Copynumber: 6.0 Consensus size: 58
18303105 NNAAAACCTT
*
18303115 AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAACCCTAAACCCTTAACCTAAA
1 AACCCTTAACTTAAAAACCCTAAACACTTAACTTAAAACCCTAAACCCTTAACCTAAA
*
18303173 AACCCTTAACTTAAAAACCCT-AACACTTAACTTAAAAACCCTAAACCCTTAACTTAAA
1 AACCCTTAACTTAAAAACCCTAAACACTTAACTT-AAAACCCTAAACCCTTAACCTAAA
* * *** *
18303231 AA-CCGTAACCCTTAAAATAAATACCCTAAACCCTTAACTTTAAAATAGT-AACCCTTAA-ATAA
1 AACCCTTAA--CTT---A-AAA-ACCCTAAACACTTAAC-TTAAAACCCTAAACCCTTAACCT--
18303293 AAAA
56 -AAA
* * * * *
18303297 CCCTAACCCTTAACTTAAAAACCCTTAACCCTTAACTTAAAAATCATAAACCCTTAACTTAAAAC
1 ----AACCCTTAACTTAAAAACCCTAAACACTTAACTT-AAAACCCTAAACCCTTAACCT--AA-
18303362 CCTA
58 ---A
* * *
18303366 AATCCTTAACTTAAAAACCCTAAATC-CTTAACTT--AACCTTAAACCCTTAACTTTAAAA
1 AACCCTTAACTTAAAAACCCTAAA-CACTTAACTTAAAACCCTAAACCCTTAAC-CT-AAA
* * * * * * *
18303424 CCGTAACTCTTAAATAAAAAACCCT-AACACTTAACTTAAAAACCTTAACCCTAAACTTAAA
1 ----AACCCTTAACTTAAAAACCCTAAACACTTAACTTAAAACCCTAAACCCTTAACCTAAA
18303485 TATAATTTGA
Statistics
Matches: 253, Mismatches: 25, Indels: 65
0.74 0.07 0.19
Matches are distributed among these distances:
57 16 0.06
58 47 0.19
59 3 0.01
60 1 0.00
61 13 0.05
62 38 0.15
63 21 0.08
64 35 0.14
65 60 0.24
66 8 0.03
69 4 0.02
70 2 0.01
71 5 0.02
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (58 bp):
AACCCTTAACTTAAAAACCCTAAACACTTAACTTAAAACCCTAAACCCTTAACCTAAA
Found at i:18306905 original size:126 final size:125
Alignment explanation
Indices: 18306637--18307079 Score: 545
Period size: 126 Copynumber: 3.5 Consensus size: 125
18306627 CCCAAACATG
* * * *
18306637 CTACTGTAGCAAAAGCGCATCCACGTGGGCGCGATTTCACAAATTATTCTCATAAAACATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTAC
* * * * ** *
18306702 TAGAAGC--GATTTTATACCATTTGCTTAGAAACGTCAGGTCGAAATTATTTTTCCAGGAC
66 TTGCAGCTTG-TTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
*
18306761 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTA
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTA
* *
18306825 CTTGCAGCATTGTTTTATACTATTGGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGAC
65 CTTGCAGC-TTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * * *
18306887 CTACTGTAACAAATGCGCGTTCACGTGGGTGCGATTTCACAAATTCTTCTCA-AATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTA
* *
18306951 CTTGCAGCGCTT-TTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTATTTCAGAAC
65 CTTGCA--GCTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * * * * *
18307013 CTACTGTAGCAAAAGCGCGTACACGTGGGCACGACTTCAAAAATCCTTCTGATAAATCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTAC
18307078 TT
66 TT
18307080 TGATTTTATC
Statistics
Matches: 277, Mismatches: 35, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
123 2 0.01
124 62 0.22
126 206 0.74
127 5 0.02
128 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTAC
TTGCAGCTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
Found at i:18308166 original size:23 final size:23
Alignment explanation
Indices: 18308131--18308187 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
18308121 AAATAAATAT
*
18308131 TTTATATTTAAAATAATTAATAAA
1 TTTATA-TAAAAATAATTAATAAA
* **
18308155 TTTATATAAAAATTATTTTTAAA
1 TTTATATAAAAATAATTAATAAA
18308178 TATTATATAA
1 T-TTATATAA
18308188 CATTTATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 14 0.50
24 14 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TTTATATAAAAATAATTAATAAA
Found at i:18308183 original size:24 final size:23
Alignment explanation
Indices: 18308151--18308196 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
18308141 AAATAATTAA
18308151 TAAATTTATATAAAAATTATTTT
1 TAAATTTATATAAAAATTATTTT
* *
18308174 TAAATATTATATAACATTTATTT
1 TAAAT-TTATATAAAAATTATTT
18308197 ATTTATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
TAAATTTATATAAAAATTATTTT
Found at i:18324381 original size:17 final size:17
Alignment explanation
Indices: 18324361--18324400 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
18324351 ATTTAAAGGA
18324361 TTCTCATTTGTTGCTTG
1 TTCTCATTTGTTGCTTG
18324378 TTCTCATTTGTTGCTTG
1 TTCTCATTTGTTGCTTG
18324395 TTCTCA
1 TTCTCA
18324401 ATTAAAGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.07, C:0.20, G:0.15, T:0.57
Consensus pattern (17 bp):
TTCTCATTTGTTGCTTG
Found at i:18325526 original size:2 final size:2
Alignment explanation
Indices: 18325519--18325560 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
18325509 AAACCTATTA
18325519 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18325561 GAAATAAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18327025 original size:7 final size:7
Alignment explanation
Indices: 18327013--18327039 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
18327003 CAGAGATAGA
18327013 GAGCATG
1 GAGCATG
18327020 GAGCATG
1 GAGCATG
18327027 GAGCATG
1 GAGCATG
18327034 GAGCAT
1 GAGCAT
18327040 AGAGGGCGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.41, T:0.15
Consensus pattern (7 bp):
GAGCATG
Found at i:18331866 original size:17 final size:17
Alignment explanation
Indices: 18331844--18331877 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18331834 AATAGCAAGC
*
18331844 AAAAAAAGGGAAAAAAG
1 AAAAAAAAGGAAAAAAG
*
18331861 AAAAAAAAGGAGAAAAG
1 AAAAAAAAGGAAAAAAG
18331878 GTTGTAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGGAAAAAAG
Found at i:18332678 original size:3 final size:3
Alignment explanation
Indices: 18332672--18332728 Score: 80
Period size: 3 Copynumber: 19.3 Consensus size: 3
18332662 TGTTATATTG
* **
18332672 TAT TAT TAT TAT T-G TAT TAT TAT TAT TAT TAT TAT TGC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
18332719 TAT TAT TAT T
1 TAT TAT TAT T
18332729 TCAATACATA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
2 1 0.02
3 46 0.98
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:18332922 original size:25 final size:23
Alignment explanation
Indices: 18332867--18332922 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 23
18332857 TATATATACG
18332867 TATATACATTTATATTTTTATAA
1 TATATACATTTATATTTTTATAA
18332890 TATTTATACATTT-TCCATATTTTATAA
1 TA--TATACATTTAT--AT-TTTTATAA
18332917 TATATA
1 TATATA
18332923 TATAGATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
23 2 0.07
24 1 0.04
25 13 0.46
26 2 0.07
27 10 0.36
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (23 bp):
TATATACATTTATATTTTTATAA
Found at i:18333544 original size:9 final size:9
Alignment explanation
Indices: 18333530--18333582 Score: 83
Period size: 9 Copynumber: 6.1 Consensus size: 9
18333520 TTTTGTTACA
18333530 ACAATTAAT
1 ACAATTAAT
18333539 ACAATTAAT
1 ACAATTAAT
*
18333548 TCAATT-A-
1 ACAATTAAT
18333555 ACAATTAAT
1 ACAATTAAT
18333564 ACAATTAAT
1 ACAATTAAT
18333573 ACAATTAAT
1 ACAATTAAT
18333582 A
1 A
18333583 ATTTGATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
7 5 0.12
8 2 0.05
9 33 0.82
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (9 bp):
ACAATTAAT
Found at i:18333563 original size:25 final size:25
Alignment explanation
Indices: 18333529--18333585 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
18333519 ATTTTGTTAC
*
18333529 AACAATTAATACAATTAATTCAATT
1 AACAATTAATACAATTAATACAATT
18333554 AACAATTAATACAATTAATACAATT
1 AACAATTAATACAATTAATACAATT
*
18333579 AATAATT
1 AACAATT
18333586 TGATAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (25 bp):
AACAATTAATACAATTAATACAATT
Found at i:18333676 original size:16 final size:16
Alignment explanation
Indices: 18333655--18333696 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
18333645 AATAATTTGA
*
18333655 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
18333671 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
18333687 TAGTTTTAAT
1 TAATTTTAAT
18333697 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:18333680 original size:22 final size:22
Alignment explanation
Indices: 18333670--18333730 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
18333660 TTACTAACAA
* * *
18333670 TTAATTTTAATAACAATTAGTT
1 TTAATTTTAATAAAAAATAATT
*
18333692 TTAATTTTATTAAAAAATAATT
1 TTAATTTTAATAAAAAATAATT
*
18333714 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
18333731 GGGCCGGGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
TTAATTTTAATAAAAAATAATT
Found at i:18335111 original size:30 final size:29
Alignment explanation
Indices: 18335075--18335132 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
18335065 TTTATAATAT
*
18335075 TAAAAATATAT-ATGTATATTTAAAAATTAA
1 TAAAAATATATAATG-ATA-ATAAAAATTAA
18335105 TAAAAATATATAATGATAATAAAAATTA
1 TAAAAATATATAATGATAATAAAAATTA
18335133 TATATAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 9 0.35
30 14 0.54
31 3 0.12
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (29 bp):
TAAAAATATATAATGATAATAAAAATTAA
Found at i:18344121 original size:33 final size:35
Alignment explanation
Indices: 18344030--18344122 Score: 90
Period size: 33 Copynumber: 2.8 Consensus size: 35
18344020 ATGCATATGG
18344030 AAAATATAAATACATGAAATCTAATTATTGAATAC
1 AAAATATAAATACATGAAATCTAATTATTGAATAC
** * *
18344065 TCAATATTCAATA-A--AAATATAATTA-T-AATTA-
1 AAAATA-TAAATACATGAAATCTAATTATTGAA-TAC
18344096 AAAATATAAATACATGAAATCTAATTA
1 AAAATATAAATACATGAAATCTAATTA
18344123 AATAACAAAC
Statistics
Matches: 45, Mismatches: 8, Indels: 12
0.69 0.12 0.18
Matches are distributed among these distances:
30 5 0.11
31 7 0.16
32 3 0.07
33 20 0.44
35 5 0.11
36 5 0.11
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (35 bp):
AAAATATAAATACATGAAATCTAATTATTGAATAC
Found at i:18347993 original size:28 final size:27
Alignment explanation
Indices: 18347935--18347990 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
18347925 AATATCCTAC
18347935 TTAATTAATTACTAATAAATTTTATTT
1 TTAATTAATTACTAATAAATTTTATTT
* *
18347962 TTAATTTAATTACTAGT-ATTTTTATTT
1 TTAA-TTAATTACTAATAAATTTTATTT
18347989 TT
1 TT
18347991 TAAAAATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 15 0.58
28 11 0.42
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (27 bp):
TTAATTAATTACTAATAAATTTTATTT
Found at i:18348826 original size:21 final size:21
Alignment explanation
Indices: 18348771--18348836 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
18348761 AAATATCAAT
18348771 TAACATGATTTTAATAATTAA
1 TAACATGATTTTAATAATTAA
* * * *
18348792 TAA-TTAATAATTAATAATAAA
1 TAACATGAT-TTTAATAATTAA
18348813 TAACATGATTTTAATAATTAA
1 TAACATGATTTTAATAATTAA
18348834 TAA
1 TAA
18348837 GACAAATTGG
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
20 3 0.09
21 29 0.83
22 3 0.09
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (21 bp):
TAACATGATTTTAATAATTAA
Found at i:18348835 original size:7 final size:7
Alignment explanation
Indices: 18348781--18348815 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
18348771 TAACATGATT
18348781 TTAATAA
1 TTAATAA
18348788 TTAATAA
1 TTAATAA
18348795 TTAATAA
1 TTAATAA
18348802 TTAATAA
1 TTAATAA
*
18348809 TAAATAA
1 TTAATAA
18348816 CATGATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
TTAATAA
Found at i:18358677 original size:22 final size:20
Alignment explanation
Indices: 18358647--18358691 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
18358637 GCTAAGGGTT
18358647 TTAAAGACTCAATTAAGGATAA
1 TTAAAGACTCAATT-A-GATAA
* *
18358669 TTAATGACTTAATTAGATAA
1 TTAAAGACTCAATTAGATAA
18358689 TTA
1 TTA
18358692 GGAATTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 8 0.38
21 1 0.05
22 12 0.57
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.36
Consensus pattern (20 bp):
TTAAAGACTCAATTAGATAA
Found at i:18366249 original size:26 final size:25
Alignment explanation
Indices: 18366213--18366313 Score: 105
Period size: 26 Copynumber: 3.9 Consensus size: 25
18366203 ACATATTTTC
*
18366213 TCAAAATTTTACTAGGGGTAAAATTG
1 TCAAAATTTTA-TAGGGGTAAAATCG
* *
18366239 TCAAAATTTTATTGAGAGTAAAATCG
1 TCAAAATTTTATAG-GGGTAAAATCG
* *
18366265 TTAAAA-TTTATCGGGGGTAAAATCG
1 TCAAAATTTTAT-AGGGGTAAAATCG
*
18366290 TCAAAATTTTACTAGGGATAAAAT
1 TCAAAATTTTA-TAGGGGTAAAAT
18366314 AGGGAAGAGA
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
25 22 0.35
26 39 0.63
27 1 0.02
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.34
Consensus pattern (25 bp):
TCAAAATTTTATAGGGGTAAAATCG
Found at i:18366284 original size:25 final size:25
Alignment explanation
Indices: 18366227--18366298 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
18366217 AATTTTACTA
* *
18366227 GGGGTAAAATTGTCAAAATTTTATTG
1 GGGGTAAAATCGTCAAAA-TTTATCG
* * *
18366253 AGAGTAAAATCGTTAAAATTTATCG
1 GGGGTAAAATCGTCAAAATTTATCG
18366278 GGGGTAAAATCGTCAAAATTT
1 GGGGTAAAATCGTCAAAATTT
18366299 TACTAGGGAT
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 24 0.63
26 14 0.37
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (25 bp):
GGGGTAAAATCGTCAAAATTTATCG
Found at i:18381447 original size:52 final size:52
Alignment explanation
Indices: 18381376--18381625 Score: 395
Period size: 52 Copynumber: 4.9 Consensus size: 52
18381366 ATCAAGTGAC
*
18381376 AAAGTGATAGGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
18381428 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
18381480 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
18381526 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
** *
18381578 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
18381626 AGTGATAAGT
Statistics
Matches: 184, Mismatches: 8, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
46 44 0.24
52 140 0.76
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:18381547 original size:46 final size:46
Alignment explanation
Indices: 18381480--18381673 Score: 226
Period size: 46 Copynumber: 4.3 Consensus size: 46
18381470 TGACAAGTGG
*
18381480 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
*
18381526 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
**
18381572 AAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
*
18381624 AAAGTG---A-T-A-AG--T-GGCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
18381661 AAAGTGATAAGTG
1 AAAGTGATAAGTG
18381674 GCTACACTTA
Statistics
Matches: 130, Mismatches: 7, Indels: 26
0.80 0.04 0.16
Matches are distributed among these distances:
37 29 0.22
38 1 0.01
40 3 0.02
41 2 0.02
42 1 0.01
43 1 0.01
46 50 0.38
52 43 0.33
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
Found at i:18381547 original size:98 final size:98
Alignment explanation
Indices: 18381368--18381636 Score: 421
Period size: 98 Copynumber: 2.7 Consensus size: 98
18381358 TACTTCTGAT
* *
18381368 CAAGTGACAAAGTGATAGGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGT
1 CAAGTGA-AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC------AAAGT
18381433 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
59 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
* *
18381473 CAAGTGGAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGT
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
18381538 GATAGCTTCGGCTACACTTATCTGATCAAGTGA
66 GATAGCTTCGGCTACACTTATCTGATCAAGTGA
**
18381571 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
18381636 G
66 G
18381637 GCTACACTTA
Statistics
Matches: 156, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
98 107 0.69
104 43 0.28
105 6 0.04
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.27
Consensus pattern (98 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
GATAGCTTCGGCTACACTTATCTGATCAAGTGA
Found at i:18381644 original size:37 final size:37
Alignment explanation
Indices: 18381600--18381708 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
18381590 GATAGCTTTA
18381600 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
18381637 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
18381674 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
18381709 ATCATACGTA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 12 0.17
36 4 0.06
37 53 0.77
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:18382414 original size:25 final size:25
Alignment explanation
Indices: 18382369--18382498 Score: 154
Period size: 25 Copynumber: 5.2 Consensus size: 25
18382359 ATAGATGTAT
* *
18382369 GCTCATACGAGCTGTA-AACGGGAA
1 GCTCATGCGAGCTGAATAACGGGAA
* *
18382393 GCTTATGCAAGCTGAATAACGGGAA
1 GCTCATGCGAGCTGAATAACGGGAA
18382418 GCTCATGCGAGCTGAATAACGGGAA
1 GCTCATGCGAGCTGAATAACGGGAA
* * *
18382443 GCTCATGCGAGCTGAGTATCGAGAA
1 GCTCATGCGAGCTGAATAACGGGAA
* * * *
18382468 GCTCATACGAGCTGAGTATCGGAAA
1 GCTCATGCGAGCTGAATAACGGGAA
18382493 GCTCAT
1 GCTCAT
18382499 AATAGCTGTT
Statistics
Matches: 93, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
24 12 0.13
25 81 0.87
ACGTcount: A:0.32, C:0.20, G:0.29, T:0.19
Consensus pattern (25 bp):
GCTCATGCGAGCTGAATAACGGGAA
Found at i:18384883 original size:44 final size:44
Alignment explanation
Indices: 18384819--18384909 Score: 155
Period size: 44 Copynumber: 2.1 Consensus size: 44
18384809 GTAGGTCAAA
*
18384819 TAATATTAAAATAACATACACTAATCAAAGTTTAAGTGGGAAAT
1 TAATATTAAAATAACATACACTAATCAAAGTTTAAATGGGAAAT
* *
18384863 TAATATTAAAATAACTTACACTAATCAGAGTTTAAATGGGAAAT
1 TAATATTAAAATAACATACACTAATCAAAGTTTAAATGGGAAAT
18384907 TAA
1 TAA
18384910 AAATATAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (44 bp):
TAATATTAAAATAACATACACTAATCAAAGTTTAAATGGGAAAT
Found at i:18398173 original size:167 final size:168
Alignment explanation
Indices: 18397863--18398182 Score: 471
Period size: 167 Copynumber: 1.9 Consensus size: 168
18397853 TGAGCCCTCA
* * * ***
18397863 AGGCCCAAAACATACATTAGAAACAATTCGAGGCTAAATTGGAAACTCAGAGAATTTTTTGTAAA
1 AGGCCCAAAACATACATTAGAAACAATTCGAGACTAAACTGAAAACTCAGAGAATTTTTCACAAA
* * *
18397928 ATCTCAAAATTTTTCTAAAATACAGGAGACACACGCCCGTATGGCTAAGCCGTATGGCTCACACG
66 ATCTCAAAATTTTTCTAAAATACAGGAGACACACACCCATATGGCCAAGCCGTATGGCTCACACG
*
18397993 GCCAAGTGACACACCCTTGTCTCTTATATAAACCATCG
131 GCCAAGTGACACACCCGTGTCTCTTATATAAACCATCG
* *
18398031 AGGCCCAAAACATATATTAGAAATAATTCGAGACTAAACTGAAAACTCAGAGAA-TTTTCACAAA
1 AGGCCCAAAACATACATTAGAAACAATTCGAGACTAAACTGAAAACTCAGAGAATTTTTCACAAA
* * * * * *
18398095 ATCTTAAAATTTTTCTAAAGTATAGGGGACACATACCCATATGGCCAAGCCGTGTGGCTCACACG
66 ATCTCAAAATTTTTCTAAAATACAGGAGACACACACCCATATGGCCAAGCCGTATGGCTCACACG
18398160 GCCAAGTGACACACCCGTGTCTC
131 GCCAAGTGACACACCCGTGTCTC
18398183 AGGCCGTGTG
Statistics
Matches: 134, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
167 85 0.63
168 49 0.37
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (168 bp):
AGGCCCAAAACATACATTAGAAACAATTCGAGACTAAACTGAAAACTCAGAGAATTTTTCACAAA
ATCTCAAAATTTTTCTAAAATACAGGAGACACACACCCATATGGCCAAGCCGTATGGCTCACACG
GCCAAGTGACACACCCGTGTCTCTTATATAAACCATCG
Found at i:18399423 original size:24 final size:24
Alignment explanation
Indices: 18399386--18399445 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
18399376 CTTATCCGGA
* * *
18399386 CAATATAACAGGTAGCTCTAAAGAG
1 CAAT-TAACGGGTAGCTCCAAAGAC
*
18399411 CAATTAACGGGTAGCTCCGAAGAC
1 CAATTAACGGGTAGCTCCAAAGAC
18399435 CAATTAACGGG
1 CAATTAACGGG
18399446 AAGCACCATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 27 0.87
25 4 0.13
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.18
Consensus pattern (24 bp):
CAATTAACGGGTAGCTCCAAAGAC
Found at i:18403876 original size:24 final size:24
Alignment explanation
Indices: 18403848--18403895 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
18403838 GGTTCTAGAT
18403848 GGAGTTGTTCAAGTCTATAGGCTC
1 GGAGTTGTTCAAGTCTATAGGCTC
*
18403872 GGAGTTGTTCAAGTCTATGGGCTC
1 GGAGTTGTTCAAGTCTATAGGCTC
18403896 AAACTTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.19, C:0.17, G:0.31, T:0.33
Consensus pattern (24 bp):
GGAGTTGTTCAAGTCTATAGGCTC
Found at i:18406224 original size:9 final size:9
Alignment explanation
Indices: 18406201--18406241 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
18406191 TACTTAATAA
18406201 ATTATTTTT
1 ATTATTTTT
* *
18406210 AATATTGTT
1 ATTATTTTT
18406219 ATTATTTTT
1 ATTATTTTT
*
18406228 AGTATTTTT
1 ATTATTTTT
18406237 ATTAT
1 ATTAT
18406242 AATTTAATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (9 bp):
ATTATTTTT
Found at i:18406224 original size:18 final size:18
Alignment explanation
Indices: 18406201--18406241 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
18406191 TACTTAATAA
18406201 ATTATTTTTAATATTGTT
1 ATTATTTTTAATATTGTT
* *
18406219 ATTATTTTTAGTATTTTT
1 ATTATTTTTAATATTGTT
18406237 ATTAT
1 ATTAT
18406242 AATTTAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
ATTATTTTTAATATTGTT
Done.