Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_722 ID=scaffold_722-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4283
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34


Found at i:3138 original size:44 final size:44

Alignment explanation


    Indices: 3075--3166  Score: 175
    Period size: 44  Copynumber: 2.1  Consensus size: 44

       3065 ATTTGTAAAT

                                                        
       3075 GAATTTTTGAAGATAGCCTTGCCAATGACAAAGTTGTTGCATAA
          1 GAATTTTTGAAGATAGCCTTGCCAATGACAAAGTTGTTGCATAA

                    *                                   
       3119 GAATTTTTTAAGATAGCCTTGCCAATGACAAAGTTGTTGCATAA
          1 GAATTTTTGAAGATAGCCTTGCCAATGACAAAGTTGTTGCATAA

                
       3163 GAAT
          1 GAAT

       3167 GTTCAGTTCG


Statistics
Matches: 47,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  44   47  1.00

ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33


Consensus pattern (44 bp):   
GAATTTTTGAAGATAGCCTTGCCAATGACAAAGTTGTTGCATAA
Done.