Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_723 ID=scaffold_723-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4279
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Found at i:573 original size:252 final size:252
Alignment explanation
Indices: 120--605 Score: 670
Period size: 252 Copynumber: 1.9 Consensus size: 252
110 GAGCCGCATT
* * *
120 TGCGATAAGTGCCAACCTTTATATGAATAGATTGCACAAGAGTTGATGGGTGCGATCATACTAGC
1 TGCGATAAGGGCCAACCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACCAGC
* * * *
185 ACTAATGCATCGGATCCCATCAGAACTCCACAGTTAAGTGCGTTTGGGCGAGAGTAGTACGAGGA
66 ACTAATGCACCGGATCCCATCAGAACTCCACAGTGAAGCGCGCTTGGGCGAGAGTAGTACGAGGA
* *
250 TGGGTGACCTCCTGGGAAGTCCTCGCGTGGAACCCTTCCCATTTTATTTCATATAATATTTTTTG
131 TGGGTGACATCCTGGGAAGTCCTCGCGTGGAACCCATCCCATTTTATTTCATATAATATTTTTTG
* * *
315 TAGTTGCATTTTCTTCACGTGGTGTAACTAATTCCTTATATGAATGGATTGCGCAAG
196 TAGTTGCATTTTCTCCACGTGGTCTAACTAATTCATTATATGAATGGATTGCGCAAG
* * * * * *
372 TGCGATAAGGGGCAGCCTTTATATGAATGGATTGCGCAAGAGTTGACGGGTGCTATCATACCAGG
1 TGCGATAAGGGCCAACCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACCAGC
* * * * *
437 ACTAATGCACCGGATCCTATTCA-AA-TGCCGCAGTGAAGCGTGCTTGGGCGAGAGTATTACTAG
66 ACTAATGCACCGGATCCCA-TCAGAACT-CCACAGTGAAGCGCGCTTGGGCGAGAGTAGTACGAG
* * * * *
500 GGTGGGTGACATCCTGGGAAGTCCTCGTGTTGCACCCATCCCATTTTATTTCATATAATGTTTTT
129 GATGGGTGACATCCTGGGAAGTCCTCGCGTGGAACCCATCCCATTTTATTTCATATAATATTTTT
* *
565 TTTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCATTAT
194 TGTAGTTGCATTTTCTCCACGTGGTCTAACTAATTCATTAT
606 TTGCGTTTTG
Statistics
Matches: 202, Mismatches: 30, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
251 1 0.00
252 198 0.98
253 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (252 bp):
TGCGATAAGGGCCAACCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACCAGC
ACTAATGCACCGGATCCCATCAGAACTCCACAGTGAAGCGCGCTTGGGCGAGAGTAGTACGAGGA
TGGGTGACATCCTGGGAAGTCCTCGCGTGGAACCCATCCCATTTTATTTCATATAATATTTTTTG
TAGTTGCATTTTCTCCACGTGGTCTAACTAATTCATTATATGAATGGATTGCGCAAG
Found at i:2116 original size:908 final size:907
Alignment explanation
Indices: 365--4279 Score: 5476
Period size: 908 Copynumber: 4.3 Consensus size: 907
355 TGAATGGATT
* *
365 GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATGGATTGCGCAAGAGTTGACGGGTGCTATCA
1 GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * * *
430 TACCAGGACTAATGCACCGGATCCTATTCA-AA-TGCCGCAGTGAAGCGTGCTTGGGCGAGAGTA
66 TACCAGCACTAATGCACCGGATCCCA-TCAGAACT-CCGCAGTCAAGCGTGCCTGGGCGAGAGTA
* * * *
493 TTACTAGGGTGGGTGACATCCTGGGAAGTCCTCGTGTTGCACCCATCCCATTTTATTTCATATAA
129 GTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATAT-A
* * *
558 TGTTTTTTTTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCATTATTTGCGTTTTGCGATATA
193 TGTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATA
* * *
623 AATAATTTGAAACAATATTTGGACGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAA-GGGC
258 AATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGC
* * * * * * * *
687 AGCCTTTATATTAATAGATTGCGCTAGAGTTGACGGGTACGATCATACCAGCACTAATGCACTGC
323 AACCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGG
* *
752 ATCCCATCTGAACTCCGTAGTCAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT
388 ATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT
*
817 -GGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAAT-TTTTTTTCGTTGCATTTTCT
453 GGGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTTGCATTTTCT
*
880 CCACGTGGAGTAACTCATTCGTTATTTGAGTTTTGCGAAATAAATAATTTGAAACGATATTTGGT
518 CCACGTGGAGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGT
* ** *
945 CCAATTTGCATTAAAATTCGAGGCGCATTTACGATAAGGGGCAACCTTTATATGAATAGATTGCA
583 CGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGAATAGATTGCA
* * * *
1010 CAAGAGTTGACGAGTGCGATGATACTAGCACTAATGCA-TGGTATCCCATCAGAACTCCGCATTG
648 CAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGG-ATCCCATCAGAACTCCGCATTG
* *
1074 AAGCGTGCTTGGGTGAGAGTAGTACGAGGATGGGTGACAC-CCTGGGAAGTCCTCGTGCTGCACC
712 AAGCGTGCTTGGGCGAGAGTAGTACGAGGATGGGTGAC-CTCCTGGGAAGTCCTCGTGTTGCACC
*
1138 CATCCCATTTTATTTCATATAATGTTTTTTTCAGTTGCATTTTCTCCACGTGGTGTAACTCATTC
776 CATCCCATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTC
* * *
1203 GTTATTTGCGTTGTGCGAAATAAATAATTTGAAATGATATTTGGTCGAAATTACATTGAAATTCG
841 GTTATTTGCGTTGTGCGAAATAAATAATTTGAAATGATATTTGGTCGAATTTGCATTCAAATTCG
1268 AG
906 AG
*
1270 GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCA
1 GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * * * * * *
1335 TACTAGCACTAATGCACCGGATCCCATTCA-AACGCCGCAGTTAAACGTGCTTGGCCGATAGTAG
66 TACCAGCACTAATGCACCGGATCCCA-TCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAG
* * * *
1399 TACTAGGATAGGTGACCTCCTGGGAAGTCCTCGTGGTGCACTCCTCCCATTTTATTTCAGATCAT
130 TACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATAT-AT
* * ** * *
1464 GTTTTTTGTTAGTTGCATTTTCTCCATGTGGTCTAACTCATTTATTATTTGCGTTATGTGAAATA
194 GTTTTTT-TTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATA
* *
1529 AATAATTTGAAACGATATTCGGTCGAATTTGCATTAAAATTCGAGGCACAAGTGCGATAAGGGGC
258 AATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGC
* ** * * * *
1594 AGCCTTTATATGAATAGATTGCGGAAGAGTTGACTGGTGCGATCATACAAGCACTACTGTACCGG
323 AACCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGG
* * * *
1659 ATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTACTAGGCTAGGTAATCTCCT
388 ATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT
* *
1724 GGGAAGTCCTCGTATTGCACCCTTCCCATTTTATTTCATATAAT-TTTTTTTAGTTGCAATTTCT
453 GGGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTTGCATTTTCT
* * *
1788 TCACGTGGTGTAACTCGTTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGT
518 CCACGTGGAGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGT
* ** *
1853 CGAATTTGCATTAAAATTCGAGGTGCATTTGCGATAAGGGGCAACCTTTATATGAATAGATAGCA
583 CGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGAATAGATTGCA
* * *
1918 CAAGAGTTGACGGGTGCAATCATACTAGCACTAATGCATCGGATCCCATCAGAACTCCGCATTGA
648 CAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCATTGA
* *
1983 AGCGTGCTTGGGCGAGAGTAGTACGAGGATGGGTGACCTCCTGCGAAGTCCTCGTGTTGCACCCC
713 AGCGTGCTTGGGCGAGAGTAGTACGAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCA
*
2048 TCCCATTTTATTTCATATAATATTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGT
778 TCCCATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGT
2113 TATTTGCGTTGTGCGAAATAAATAATTTGAAATGATATTTGGTCGAATTTGCATTCAAATTCGAG
843 TATTTGCGTTGTGCGAAATAAATAATTTGAAATGATATTTGGTCGAATTTGCATTCAAATTCGAG
* * * * *
2178 GCGAAAGTGCG--AACGGGCAGCCTTTATATTAATAGATTGCGCTAGAGTTGACGGGTACGATCA
1 GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* ** * *
2241 TACCAGCACTAATGCAGCGGATCCCATCAGAACTATGCAGTCAAGCATGCCTGGGCAAGAGTAGT
66 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGT
* * * * * * * * *
2306 ACTTGTATGGGTGACCTTCTGGGAAGTCCACATATTGCACCCCACCCATTTTATTTCATGTA-AT
131 ACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATATGT
* *
2370 TTTTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGGGAAATAAAT
196 TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAAT
* * * * **
2435 AATTTGAAATGATATTTGGTCAAATTTACATTAAAATTTGAGGCGCATTTGCGATAAGGGGCAAC
261 AATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAAC
* * *
2500 CTTTATATGAGTAGATTGCACAAGGGTTGACGGGTGCGATCATACTAGCACTAATGCA-TGGTAT
326 CTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGG-AT
* * * * * *
2564 CCCATCAGAACTCCGCATTAAAGCGTGCTTGGGCGAGAGTAGTACCAAGATGGGTGACCCCCTGG
390 CCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGG
* * * * *
2629 GAAGTCATCGTGTTACACCCCTCCCATTTTAGTTCATATAATATTTTTTTAGTTACATTTTCTCC
455 GAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTTGCATTTTCTCC
* * *
2694 ACGTGGAGTAACTCATTCGTGATTTGCGTTGTGCGAAATAAATAATTTGAAATGATATTTGGTCG
520 ACGTGGAGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCG
* * * * * *
2759 AATTTGCATTCAAATTCGAGGCGCAAGTGCG--AACGGGCAGCCTTTATATTAATAGATTGCGCT
585 AATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGAATAGATTGCACA
** * * * *
2822 AGAGTTGACGGGTATGATCATACCAGCAGTAATGCACCGGATCCAATCAGAACTCCGCAGTCAAG
650 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCATTGAAG
* * * *
2887 CGTGCCTGGGCGAGTGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
715 CGTGCTTGGGCGAGAGTAGTACGAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCATC
* *
2952 CCATTTTATTTCATATAATGGTTTTTGTTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCGTT
780 CCATTTTATTTCATATAAT-GTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTT
** ** * *
3017 ATTTGCGTTACGCGAAATAAATAATTTGAAATGATATTCAGTCCAATTTGCATTAAAATTCGAG
844 ATTTGCGTTGTGCGAAATAAATAATTTGAAATGATATTTGGTCGAATTTGCATTCAAATTCGAG
* * * *
3081 GCACAAGTGCGATAAGGGACAGCCTTTATATGAATAGATTGCGGAAGAGTTGA-GCAGTGCGATC
1 GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACG-GGTGCGATC
* * *
3145 ATACAAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTGAAGTGTGCCTGGGCGAGAGTAG
65 ATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAG
* * * * * *
3210 TATTAGGCTAGGTAACCTCCTGGGAAGTCCTCGTGTTACACCCCTCCCACTTTATTTCATATAAT
130 TACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATAT-AT
3275 GTTTTTTGTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATA
194 GTTTTTT-TTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATA
* **
3340 AATAATTTGAAACGATATTTGGTCAAATTTGCATTAAAATTCGAGGCGCATTTGCGATAAGGGGC
258 AATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGC
* * * *
3405 AACCTTTATATGAATAGATAGCACAAGAGTTGACGGGTGCAATCATACTTGCACTAATGCATCGG
323 AACCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGG
* * * *
3470 ATCCCATCAGAACTCCGCATTGAAGCGTGCTTGGGCGAGAGTAGTACGAGGATGGGTGACCTCCT
388 ATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT
* * * * *
3535 AGAAAGTCCCCGTGTTGCACCCCTCTCATTTTATTTCATATAATATTTTTTTAGTTGCATTTTCT
453 GGGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTTGCATTTTCT
* * * *
3600 CTACGTGGTGTAACTCATTCGTTATATGCGTTTTGCGAAATAAATAATTTGAAACGGTATTTGGT
518 CCACGTGGAGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGT
* * * * * * * *
3665 CGAATTTGCAGTCAAATTCGAAGCGCAAGTGCGATATGGGGCAGCCGTTATATGAATGGATTGCG
583 CGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGAATAGATTGCA
* * *
3730 CAAGAGTTGACAGGTGCGATCATACCAGCACTAATGCACCGGATCCCATTCA-AACGCCACAGTT
648 CAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCA-TCAGAACTCCGCA-TT
* * * *
3794 -AAGCGTGCTTGGGCGAGAGTATTACTAGGGTGGGTGACATCCTGGGAAGTCCTCGTGTTGCACC
711 GAAGCGTGCTTGGGCGAGAGTAGTACGAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
*
3858 CATCCCATTGTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTC
776 CATCCCATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTC
* * * **
3923 GTTATTTTCATTCTGCGAAATAAATAATTTGAAACAATATTTGGTCGAATTTGCATTCAAATTCG
841 GTTATTTGCGTTGTGCGAAATAAATAATTTGAAATGATATTTGGTCGAATTTGCATTCAAATTCG
3988 AG
906 AG
* * * * *
3990 GCGCAAGTGCGATAA-GGGCTGCCTTTATATTAATAGATTGTGCTAGAGTTGACGGGTACGATCA
1 GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* ** * *
4054 TACCAGCACTAATGCACCAGATCCCATCAGAACTATGCAGTCAAGCATGCCTGGGCAAGAGTAGT
66 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGT
* * * * * * * *
4119 ACTTGTATGGGTGACCTTCTGGGAAGTCCACATATTGCACCCCACCCATTTTATTTCATATA-AT
131 ACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATATGT
* *
4183 TTTTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAGT
196 TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAAT
*
4248 AATTTGAAACGATATTTGGTCGAATTTACATT
261 AATTTGAAACGATATTTGGTCGAATTTGCATT
Statistics
Matches: 2675, Mismatches: 313, Indels: 44
0.88 0.10 0.01
Matches are distributed among these distances:
902 164 0.06
903 362 0.14
904 113 0.04
905 419 0.16
906 259 0.10
907 126 0.05
908 958 0.36
909 116 0.04
910 154 0.06
911 4 0.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (907 bp):
GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGT
ACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATATGT
TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAAT
AATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAAC
CTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGGATC
CCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGG
AAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTAGTTGCATTTTCTCCA
CGTGGAGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGGTCGA
ATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGAATAGATTGCACAA
GAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCATTGAAGC
GTGCTTGGGCGAGAGTAGTACGAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCATCC
CATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTAT
TTGCGTTGTGCGAAATAAATAATTTGAAATGATATTTGGTCGAATTTGCATTCAAATTCGAG
Found at i:2424 original size:602 final size:602
Alignment explanation
Indices: 365--4279 Score: 5330
Period size: 602 Copynumber: 6.5 Consensus size: 602
355 TGAATGGATT
* *
365 GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATGGATTGCGCAAGAGTTGACGGGTGCTATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * * *
430 TACCAGGACTAATGCACCGGATCCTATTCA-AA-TGCCGCAGTGAAGCGTGCTTGGGCGAGAGTA
65 TACCAGCACTAATGCACCGGATCCCA-TCAGAACT-CCGCAGTCAAGCGTGCCTGGGCGAGAGTA
* * *
493 TTACTAGGGTGGGTGACATCCTGGGAAGTCCTCGTGTTGCA-CCCATCCCATTTTATTTCATATA
128 GTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCA-CCCATTTTATTTCATATA
* * * *
557 ATGTTTTTTTTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCATTATTTGCGTTTTGCGATAT
192 A--TTTTTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAAT
* * *
622 AAATAATTTGAAACAATATTTGGACGAATTTGCATTCAAATTCGAGGCGCAAGTGCGATAA-GGG
255 AAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * * * *
686 CAGCCTTTATATTAATAGATTGCGCTAGAGTTGACGGGTACGATCATACCAGCACTAATGCACTG
320 CAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCG
* * * * *
751 CATCCCATCTGAACTCCGTAGTCAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCC
385 GATCCCATCAGAACTCCGCA-TTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCC
* *
816 T-GGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATAT-A-ATTTTTTTTCGTTGCATTTT
449 TGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTTAGTTGCATTTT
* * *
878 CTCCACGTGGAGTAACTCATTCGTTATTTGAGTTTTGCGAAATAAATAATTTGAAACGATATTTG
514 CTCCACGTGGTGTAACTCATTCGTTATTTGCGTTGTGCGAAATAAATAATTTGAAACGATATTTG
*
943 GTCCAATTTGCATTAAAATTCGAG
579 GTCGAATTTGCATTAAAATTCGAG
** * * * * *
967 GCGCATTTACGATAAGGGGCAACCTTTATATGAATAGATTGCACAAGAGTTGACGAGTGCGATGA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * * * * *
1032 TACTAGCACTAATGCA-TGGTATCCCATCAGAACTCCGCATTGAAGCGTGCTTGGGTGAGAGTAG
65 TACCAGCACTAATGCACCGG-ATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAG
* *
1096 TACGAGGATGGGTGACAC-CCTGGGAAGTCCTCGTGCTGCA-CCCATCCCATTTTATTTCATATA
129 TACTAGGATGGGTGAC-CTCCTGGGAAGTCCTCGTGTTGCACCCCA-CCCATTTTATTTCATATA
* *
1159 ATGTTTTTTTCAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTGTGCGAAAT
192 AT-TTTTTTT-AGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAAT
* * * *
1224 AAATAATTTGAAATGATATTTGGTCGAAATTACATTGAAATTCGAGGCGCAAGTGCGATAAGGGG
255 AAATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGG
1289 CAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCG
320 CAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCG
* * * * *
1354 GATCCCATTCA-AACGCCGCAGTTAAACGTGCTTGGCCGATAGTAGTACTAGGATAGGTGACCTC
385 GATCCCA-TCAGAACTCCGCA-TTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTC
* * * * *
1418 CTGGGAAGTCCTCGTGGTGCACTCCTCCCATTTTATTTCAGATCATGTTTTTTGTTAGTTGCATT
448 CTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTT-TTAGTTGCATT
* * ** * *
1483 TTCTCCATGTGGTCTAACTCATTTATTATTTGCGTTATGTGAAATAAATAATTTGAAACGATATT
512 TTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTGTGCGAAATAAATAATTTGAAACGATATT
*
1548 CGGTCGAATTTGCATTAAAATTCGAG
577 TGGTCGAATTTGCATTAAAATTCGAG
* * *
1574 GCACAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGGAAGAGTTGACTGGTGCGATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * *
1639 TACAAGCACTACTGTACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGT
65 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGT
* * * * * **
1704 ACTAGGCTAGGTAATCTCCTGGGAAGTCCTCGTATTGCACCCTTCCCATTTTATTTCATATAATT
130 ACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCACCCATTTTATTTCATATAATT
* *
1769 TTTTTTAGTTGCAATTTCTTCACGTGGTGTAACTCGTTCGTTATTTGCGTTTTGCGAAATAAATA
195 TTTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATA
* ** *
1834 ATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGTGCATTTGCGATAAGGGGCAACC
260 ATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCC
* * *
1899 TTTATATGAATAGATAGCACAAGAGTTGACGGGTGCAATCATACTAGCACTAATGCATCGGATCC
325 TTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGGATCC
* *
1964 CATCAGAACTCCGCATTGAAGCGTGCTTGGGCGAGAGTAGTACGAGGATGGGTGACCTCCTGCGA
390 CATCAGAACTCCGCATT-AAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGA
2029 AGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTTAGTTGCATTTTCTCCA
454 AGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTTAGTTGCATTTTCTCCA
*
2094 CGTGGTGTAACTCATTCGTTATTTGCGTTGTGCGAAATAAATAATTTGAAATGATATTTGGTCGA
519 CGTGGTGTAACTCATTCGTTATTTGCGTTGTGCGAAATAAATAATTTGAAACGATATTTGGTCGA
*
2159 ATTTGCATTCAAATTCGAG
584 ATTTGCATTAAAATTCGAG
* * * * *
2178 GCGAAAGTGCG-AACGGGCAGCCTTTATATTAATAGATTGCGCTAGAGTTGACGGGTACGATCAT
1 GCGCAAGTGCGAAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
* ** * *
2242 ACCAGCACTAATGCAGCGGATCCCATCAGAACTATGCAGTCAAGCATGCCTGGGCAAGAGTAGTA
66 ACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTA
* * * * * * *
2307 CTTGTATGGGTGACCTTCTGGGAAGTCCACATATTGCACCCCACCCATTTTATTTCATGTAATTT
131 CTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCACCCATTTTATTTCATATAATTT
*
2372 TTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGGGAAATAAATAA
196 TTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAA
* * * * ** *
2437 TTTGAAATGATATTTGGTCAAATTTACATTAAAATTTGAGGCGCATTTGCGATAAGGGGCAACCT
261 TTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCT
* * *
2502 TTATATGAGTAGATTGCACAAGGGTTGACGGGTGCGATCATACTAGCACTAATGCA-TGGTATCC
326 TTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGG-ATCC
* * *
2566 CATCAGAACTCCGCATTAAAGCGTGCTTGGGCGAGAGTAGTACCAAGATGGGTGACCCCCTGGGA
390 CATCAGAACTCCGCATT-AAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGA
* * * *
2631 AGTCATCGTGTTACACCCCTCCCATTTTAGTTCATATAATA-TTTTTTTAGTTACATTTTCTCCA
454 AGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTTAGTTGCATTTTCTCCA
* * *
2695 CGTGGAGTAACTCATTCGTGATTTGCGTTGTGCGAAATAAATAATTTGAAATGATATTTGGTCGA
519 CGTGGTGTAACTCATTCGTTATTTGCGTTGTGCGAAATAAATAATTTGAAACGATATTTGGTCGA
*
2760 ATTTGCATTCAAATTCGAG
584 ATTTGCATTAAAATTCGAG
* * * **
2779 GCGCAAGTGCG-AACGGGCAGCCTTTATATTAATAGATTGCGCTAGAGTTGACGGGTATGATCAT
1 GCGCAAGTGCGAAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
* * *
2843 ACCAGCAGTAATGCACCGGATCCAATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGTGTAGTA
66 ACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTA
*
2908 CTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGG
131 CTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCACCCATTTTATTTCATATAAT--
* * **
2973 TTTTTGTTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCGTTATTTGCGTTACGCGAAATAAA
194 TTTTT-TTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAA
* ** * * *
3038 TAATTTGAAATGATATTCAGTCCAATTTGCATTAAAATTCGAGGCACAAGTGCGATAAGGGACAG
258 TAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAG
** * *
3103 CCTTTATATGAATAGATTGCGGAAGAGTTGA-GCAGTGCGATCATACAAGCACTAATGCACCGGA
323 CCTTTATATGAATAGATTGCACAAGAGTTGACG-GGTGCGATCATACTAGCACTAATGCACCGGA
* * * * * * *
3167 TCCCATCAGAACTCCGCAGTGAAGTGTGCCTGGGCGAGAGTAGTATTAGGCTAGGTAACCTCCTG
387 TCCCATCAGAACTCCGCA-TTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTG
* * *
3232 GGAAGTCCTCGTGTTACACCCCTCCCACTTTATTTCATATAATGTTTTTTGTTAGTTGCATTTTC
451 GGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTT-TTAGTTGCATTTTC
*
3297 TCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAATTTGAAACGATATTTGG
515 TCCACGTGGTGTAACTCATTCGTTATTTGCGTTGTGCGAAATAAATAATTTGAAACGATATTTGG
*
3362 TCAAATTTGCATTAAAATTCGAG
580 TCGAATTTGCATTAAAATTCGAG
** * * * *
3385 GCGCATTTGCGATAAGGGGCAACCTTTATATGAATAGATAGCACAAGAGTTGACGGGTGCAATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
** * * * *
3450 TACTTGCACTAATGCATCGGATCCCATCAGAACTCCGCATTGAAGCGTGCTTGGGCGAGAGTAGT
65 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGT
* * * * * *
3515 ACGAGGATGGGTGACCTCCTAGAAAGTCCCCGTGTTGCACCCCTCTCATTTTATTTCATATAATA
130 ACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCACCCATTTTATTTCATATAAT-
*
3580 TTTTTTTAGTTGCATTTTC-TCTACGTGGTGTAACTCATTCGTTATATGCGTTTTGCGAAATAAA
194 TTTTTTTAGTTGCATTTTCTTC-ACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAA
* * * * *
3644 TAATTTGAAACGGTATTTGGTCGAATTTGCAGTCAAATTCGAAGCGCAAGTGCGATATGGGGCAG
258 TAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAG
* * * * *
3709 CCGTTATATGAATGGATTGCGCAAGAGTTGACAGGTGCGATCATACCAGCACTAATGCACCGGAT
323 CCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGGAT
* * * * *
3774 CCCATTCA-AACGCCACAGTTAAGCGTGCTTGGGCGAGAGTATTACTAGGGTGGGTGACATCCTG
388 CCCA-TCAGAACTCCGCA-TTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTG
* * *
3838 GGAAGTCCTCGTGTTGCACCCATCCCATTGTATTTCATATAATGTTTTTTTTAGTTGCATTTTCT
451 GGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTTAGTTGCATTTTCT
* * * *
3903 CCACGTGGTGTAACTCATTCGTTATTTTCATTCTGCGAAATAAATAATTTGAAACAATATTTGGT
516 CCACGTGGTGTAACTCATTCGTTATTTGCGTTGTGCGAAATAAATAATTTGAAACGATATTTGGT
*
3968 CGAATTTGCATTCAAATTCGAG
581 CGAATTTGCATTAAAATTCGAG
* * * * *
3990 GCGCAAGTGCGATAA-GGGCTGCCTTTATATTAATAGATTGTGCTAGAGTTGACGGGTACGATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* ** * *
4054 TACCAGCACTAATGCACCAGATCCCATCAGAACTATGCAGTCAAGCATGCCTGGGCAAGAGTAGT
65 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGT
* * * * * *
4119 ACTTGTATGGGTGACCTTCTGGGAAGTCCACATATTGCACCCCACCCATTTTATTTCATATAATT
130 ACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCACCCATTTTATTTCATATAATT
*
4184 TTTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAGTA
195 TTTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATA
*
4249 ATTTGAAACGATATTTGGTCGAATTTACATT
260 ATTTGAAACGATATTTGGTCGAATTTGCATT
Statistics
Matches: 2936, Mismatches: 345, Indels: 63
0.88 0.10 0.02
Matches are distributed among these distances:
600 1 0.00
601 292 0.10
602 701 0.24
603 211 0.07
604 548 0.19
605 386 0.13
606 377 0.13
607 258 0.09
608 162 0.06
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (602 bp):
GCGCAAGTGCGAAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
ACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGTA
CTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCACCCATTTTATTTCATATAATTT
TTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAA
TTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCT
TTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGGATCCC
ATCAGAACTCCGCATTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
TCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATATTTTTTTTAGTTGCATTTTCTCCACG
TGGTGTAACTCATTCGTTATTTGCGTTGTGCGAAATAAATAATTTGAAACGATATTTGGTCGAAT
TTGCATTAAAATTCGAG
Found at i:3049 original size:302 final size:300
Alignment explanation
Indices: 365--4279 Score: 5264
Period size: 302 Copynumber: 13.0 Consensus size: 300
355 TGAATGGATT
* *
365 GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATGGATTGCGCAAGAGTTGACGGGTGCTATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * *
430 TACCAGGACTAATGCACCGGATCCTATTCA-AA-TGCCGCAGTGAAGCGTGCTTGGGCGAGAGTA
65 TACCAGCACTAATGCACCGGATCCCA-TCAGAACT-CCGCAGTCAAGCGTGCTTGGGCGAGAGTA
* * * *
493 TTACTAGGGTGGGTGACATCCTGGGAAGTCCTCGTGTTGCACCCATCCCATTTTATTTCATATAA
128 GTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAA
* * *
558 TGTTTTTTTTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCATTATTTGCGTTTTGCGATATA
193 --TTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATA
* * *
623 AATAATTTGAAACAATATTTGGACGAATTTGCATTCAAATTCGAG
256 AATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
* * *
668 GCGCAAGTGCGATAA-GGGCAGCCTTTATATTAATAGATTGCGCTAGAGTTGACGGGTACGATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * * * *
732 TACCAGCACTAATGCACTGCATCCCATCTGAACTCCGTAGTCAAGCGTGCCTGGGCGAGAGTAGT
65 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGT
*
797 ACTAGGATGGGTGACCTCCT-GGAAGTCCTCGTATTGCACCCCTCCCATTTTATTTCATATAATT
130 ACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATT
* * *
861 TTTTTTCGTTGCATTTTCTCCACGTGGAGTAACTCATTCGTTATTTGAGTTTTGCGAAATAAATA
195 TTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATA
*
926 ATTTGAAACGATATTTGGTCCAATTTGCATTAAAATTCGAG
260 ATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
** * * * * *
967 GCGCATTTACGATAAGGGGCAACCTTTATATGAATAGATTGCACAAGAGTTGACGAGTGCGATGA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * * * *
1032 TACTAGCACTAATGCA-TGGTATCCCATCAGAACTCCGCATTGAAGCGTGCTTGGGTGAGAGTAG
65 TACCAGCACTAATGCACCGG-ATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAG
* * *
1096 TACGAGGATGGGTGACAC-CCTGGGAAGTCCTCGTGCTGCACCCATCCCATTTTATTTCATATAA
129 TACTAGGATGGGTGAC-CTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAA
*
1160 TGTTTTTTTCAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTGTGCGAAATA
193 T-TTTTTTT-AGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATA
* * * *
1225 AATAATTTGAAATGATATTTGGTCGAAATTACATTGAAATTCGAG
256 AATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
*
1270 GCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCACAAGAGTTGACGGGTGCGATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * * * * *
1335 TACTAGCACTAATGCACCGGATCCCATTCA-AACGCCGCAGTTAAACGTGCTTGGCCGATAGTAG
65 TACCAGCACTAATGCACCGGATCCCA-TCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAG
* * * *
1399 TACTAGGATAGGTGACCTCCTGGGAAGTCCTCGTGGTGCACTCCTCCCATTTTATTTCAGATCAT
129 TACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATAT-A-
* * * ** * *
1464 GTTTTTTGTTAGTTGCATTTTCTCCATGTGGTCTAACTCATTTATTATTTGCGTTATGTGAAATA
192 ATTTTTT-TTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATA
*
1529 AATAATTTGAAACGATATTCGGTCGAATTTGCATTAAAATTCGAG
256 AATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
* * *
1574 GCACAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGGAAGAGTTGACTGGTGCGATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * * *
1639 TACAAGCACTACTGTACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGAGTAGT
65 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGT
* * * * * *
1704 ACTAGGCTAGGTAATCTCCTGGGAAGTCCTCGTATTGCACCCTTCCCATTTTATTTCATATAATT
130 ACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATT
* * *
1769 TTTTTTAGTTGCAATTTCTTCACGTGGTGTAACTCGTTCGTTATTTGCGTTTTGCGAAATAAATA
195 TTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATA
1834 ATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
260 ATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
* ** * * * *
1875 GTGCATTTGCGATAAGGGGCAACCTTTATATGAATAGATAGCACAAGAGTTGACGGGTGCAATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * * *
1940 TACTAGCACTAATGCATCGGATCCCATCAGAACTCCGCATTGAAGCGTGCTTGGGCGAGAGTAGT
65 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGT
* *
2005 ACGAGGATGGGTGACCTCCTGCGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATA
130 ACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATAT-A-A
*
2070 TTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTGTGCGAAATAAA
193 TTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAA
* *
2135 TAATTTGAAATGATATTTGGTCGAATTTGCATTCAAATTCGAG
258 TAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
* * * * *
2178 GCGAAAGTGCG-AACGGGCAGCCTTTATATTAATAGATTGCGCTAGAGTTGACGGGTACGATCAT
1 GCGCAAGTGCGAAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
* ** * * *
2242 ACCAGCACTAATGCAGCGGATCCCATCAGAACTATGCAGTCAAGCATGCCTGGGCAAGAGTAGTA
66 ACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTA
* * * * * * * *
2307 CTTGTATGGGTGACCTTCTGGGAAGTCCACATATTGCACCCCACCCATTTTATTTCATGTAATTT
131 CTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATTT
* *
2372 TTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGGGAAATAAATAA
196 TTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAA
* * * *
2437 TTTGAAATGATATTTGGTCAAATTTACATTAAAATTTGAG
261 TTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
** * * * *
2477 GCGCATTTGCGATAAGGGGCAACCTTTATATGAGTAGATTGCACAAGGGTTGACGGGTGCGATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * * *
2542 TACTAGCACTAATGCA-TGGTATCCCATCAGAACTCCGCATTAAAGCGTGCTTGGGCGAGAGTAG
65 TACCAGCACTAATGCACCGG-ATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAG
* * * * * *
2606 TACCAAGATGGGTGACCCCCTGGGAAGTCATCGTGTTACACCCCTCCCATTTTAGTTCATATAAT
129 TACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAAT
* * * *
2671 ATTTTTTTAGTTACATTTTCTCCACGTGGAGTAACTCATTCGTGATTTGCGTTGTGCGAAATAAA
194 -TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAA
* *
2736 TAATTTGAAATGATATTTGGTCGAATTTGCATTCAAATTCGAG
258 TAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
* * * **
2779 GCGCAAGTGCG-AACGGGCAGCCTTTATATTAATAGATTGCGCTAGAGTTGACGGGTATGATCAT
1 GCGCAAGTGCGAAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
* * * *
2843 ACCAGCAGTAATGCACCGGATCCAATCAGAACTCCGCAGTCAAGCGTGCCTGGGCGAGTGTAGTA
66 ACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTA
2908 CTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGG
131 CTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAAT--
* **
2973 TTTTTGTTAGTTGCATTTTCTCCACGTGGTCTAACTCATTCGTTATTTGCGTTACGCGAAATAAA
194 TTTTT-TTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAA
* ** *
3038 TAATTTGAAATGATATTCAGTCCAATTTGCATTAAAATTCGAG
258 TAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
* * * *
3081 GCACAAGTGCGATAAGGGACAGCCTTTATATGAATAGATTGCGGAAGAGTTGA-GCAGTGCGATC
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACG-GGTGCGATC
* * * *
3145 ATACAAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTGAAGTGTGCCTGGGCGAGAGTAG
64 ATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAG
* * * * * *
3210 TATTAGGCTAGGTAACCTCCTGGGAAGTCCTCGTGTTACACCCCTCCCACTTTATTTCATATAAT
129 TACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAA-
3275 GTTTTTTGTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATA
193 -TTTTTT-TTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATA
*
3340 AATAATTTGAAACGATATTTGGTCAAATTTGCATTAAAATTCGAG
256 AATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
** * * * *
3385 GCGCATTTGCGATAAGGGGCAACCTTTATATGAATAGATAGCACAAGAGTTGACGGGTGCAATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
** * * *
3450 TACTTGCACTAATGCATCGGATCCCATCAGAACTCCGCATTGAAGCGTGCTTGGGCGAGAGTAGT
65 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGT
* * * * *
3515 ACGAGGATGGGTGACCTCCTAGAAAGTCCCCGTGTTGCACCCCTCTCATTTTATTTCATATAATA
130 ACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAAT-
* *
3580 TTTTTTTAGTTGCATTTTCTCTACGTGGTGTAACTCATTCGTTATATGCGTTTTGCGAAATAAAT
194 TTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAAT
* * * *
3645 AATTTGAAACGGTATTTGGTCGAATTTGCAGTCAAATTCGAA
259 AATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
* * * *
3687 GCGCAAGTGCGATATGGGGCAGCCGTTATATGAATGGATTGCGCAAGAGTTGACAGGTGCGATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* * * *
3752 TACCAGCACTAATGCACCGGATCCCATTCA-AACGCCACAGTTAAGCGTGCTTGGGCGAGAGTAT
65 TACCAGCACTAATGCACCGGATCCCA-TCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAG
* * * *
3816 TACTAGGGTGGGTGACATCCTGGGAAGTCCTCGTGTTGCACCCATCCCATTGTATTTCATATAAT
129 TACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAA-
* * *
3881 GTTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTTCATTCTGCGAAATAA
193 -TTTTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAA
* *
3946 ATAATTTGAAACAATATTTGGTCGAATTTGCATTCAAATTCGAG
257 ATAATTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
* * * * *
3990 GCGCAAGTGCGATAA-GGGCTGCCTTTATATTAATAGATTGTGCTAGAGTTGACGGGTACGATCA
1 GCGCAAGTGCGA-AAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCA
* ** * * *
4054 TACCAGCACTAATGCACCAGATCCCATCAGAACTATGCAGTCAAGCATGCCTGGGCAAGAGTAGT
65 TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGT
* * * * * * *
4119 ACTTGTATGGGTGACCTTCTGGGAAGTCCACATATTGCACCCCACCCATTTTATTTCATATAATT
130 ACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATT
* *
4184 TTTTTTAGTTGCATTTTCTTCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAGTA
195 TTTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATA
*
4249 ATTTGAAACGATATTTGGTCGAATTTACATT
260 ATTTGAAACGATATTTGGTCGAATTTGCATT
Statistics
Matches: 3170, Mismatches: 407, Indels: 73
0.87 0.11 0.02
Matches are distributed among these distances:
299 222 0.07
300 362 0.11
301 649 0.20
302 738 0.23
303 504 0.16
304 690 0.22
305 4 0.00
306 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (300 bp):
GCGCAAGTGCGAAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
ACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTA
CTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATTT
TTTTTAGTTGCATTTTCTCCACGTGGTGTAACTCATTCGTTATTTGCGTTTTGCGAAATAAATAA
TTTGAAACGATATTTGGTCGAATTTGCATTAAAATTCGAG
Done.