Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_732 ID=scaffold_732-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4199
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Found at i:856 original size:132 final size:132
Alignment explanation
Indices: 667--1034 Score: 601
Period size: 132 Copynumber: 2.8 Consensus size: 132
657 GAGATAGGAA
* * * **
667 TACTGGCTTCAATGGACTCTACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCC
1 TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCC
732 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAACCTATTCCGCTGCTGTCCAGGGAAGTAGA
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAACCTATTCCGCTGCTGTCCAGGGAAGTAGA
797 AT
131 AT
* * *
799 TACTGGCTTCAATGTACTCCACTATAACCACATGGAGGTAAAATCTGCCATCTTTGATCTGCCCC
1 TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCC
* * * *
864 ACTACTGTTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTCTAGGGAAGTAGA
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAACCTATTCCGCTGCTGTCCAGGGAAGTAGA
929 AT
131 AT
* *
931 TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCATCGATCTGCTCC
1 TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCC
*
996 ACTACTACTTAGGGAGACAAGATCTGAAATCTTCAACCT
66 ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAACCT
1035 GCTCCACTGT
Statistics
Matches: 215, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 215 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
TACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCC
ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAACCTATTCCGCTGCTGTCCAGGGAAGTAGA
AT
Done.