Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_733 ID=scaffold_733-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4796
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.23
Warning! 611 characters in sequence are not A, C, G, or T
Found at i:497 original size:132 final size:132
Alignment explanation
Indices: 1--1424 Score: 1932
Period size: 132 Copynumber: 10.7 Consensus size: 132
* * *
1 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCA
1 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
* * * * *
66 AGTGTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCATGCCTTTGTCCTCCCTCGAGC
66 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAG-CATTGT-CTCCCT-GAGC
131 AGCGAG
128 AGC-AG
* * **
137 CGGAGTGGGTAGAAAATTGGTAGATCTTCTCTCCCTAAGCACAAGTGGAGCAGATCGAAGACGAC
1 CGGAGTGGGTTGAAAATT-GTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAC
* **
202 AAATTTTATCTTTCCAACTTAGTGGGAAGCAGATTTTAAGTCACCAAGCATTGTCTCCCTGAGCA
65 AAATCTTATCTTTCCAAGATAGTGGGAAGCAGA-TTTAAGTCACCAAGCATTGTCTCCCTGAGCA
267 GCAG
129 GCAG
* * **
271 CGGAATGGGTTGAAAATTGTAGATCTTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGT
1 CGGAGTGGGTTGAAAATTGTAGATC-TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAC
* * * * * **
336 AAATTTTATTTTTACAAGATAATGGGAAGCAAATTTCGGTCACCAAGCATTGTCTCCCTGAGCAG
65 AAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAG
*
401 CTG
130 CAG
* **
404 CAGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTA
1 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
** * * *
469 AATCTGCTCTTTCCAGGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGC
66 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGC
534 AG
131 AG
*
536 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTTGTGGAGCAGATCGAAGACGACA
1 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
* * * * *
601 AATATTATATTTCCAAGATAGTGGGAAGTAGATTTATGTCACCAAGCATTGTCTCCCTAAGCAGC
66 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGC
666 AG
131 AG
** * *
668 CGGAGTGGGTCAAAAATTGTAAATCTTATCTCCCTAAGCAGTAGTCGAGCAGATCGAAGACGACA
1 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
* * * *
733 AATCTTATCTTTTCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCTCTGAGCA-C
66 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGC
797 TAG
131 -AG
* * ** * * *
800 CGGAGTAGGTTGAAAATTTTAGATCTTATCTCCCTAAGTTGTAGTGGAGCAGATCGAATATGGCA
1 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
* * ** *
865 AATCTTATTTTTCCAAGATAATGGGAAGCAGATTTCGGTCACCGAGCATTGTCTCCCTGAGCAGC
66 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGC
*
930 TG
131 AG
* * * * * * * *
932 CAGAGTGGGTTAAAAATTGTTGATGTTATCTCCCTTAGCAGTAGTAGAACAGATCGAAGACAACA
1 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
* * * *
997 AATCTTATCTTTCCAAGATAGTGGGAAGAAGATTTAAGTCACCAAGCCTTGTCTCCCTAAGCAGT
66 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGC
1062 AG
131 AG
* *
1064 CAGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAGACGACA
1 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
* * *
1129 AATCTTATCTTTCCACGATAGTGGGAAACAGATTTAAGTCACCAAGCATTGTCTCTCTGAGCAGC
66 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGC
1194 AG
131 AG
* * * *
1196 CGGAGTGGGTTGAAATTTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGCA
1 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
* * * *
1261 AGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGG
66 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGC
1326 AG
131 AG
* * *
1328 CGGAGTGGGTTGAAAATTGTAGATCTTCTCTCCCTAAGCACTAGTGGAGCAGATCGAAGAAGACA
1 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
* **
1393 AATTTTATCTTTCCAACTTAGTGGGAAGCAGA
66 AATCTTATCTTTCCAAGATAGTGGGAAGCAGA
1425 NNNNNNNNNN
Statistics
Matches: 1123, Mismatches: 160, Indels: 14
0.87 0.12 0.01
Matches are distributed among these distances:
131 1 0.00
132 865 0.77
133 63 0.06
134 78 0.07
135 7 0.01
136 23 0.02
137 74 0.07
138 12 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGC
AG
Found at i:2177 original size:132 final size:132
Alignment explanation
Indices: 1842--2567 Score: 1030
Period size: 131 Copynumber: 5.5 Consensus size: 132
1832 NNNNNNNNNN
* * *
1842 TCCCTGAGCAGCAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTATGCCGTAGTGGAGCA
1 TCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* * * *
1907 GATCGAAGACGGCAAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTG
66 GATCGAAGACGACAAATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATTG
1972 TC
131 TC
* * *
1974 T-CCTGAGCAGGAGCGGAGTGGGTTGAAAATTGTAGATCTTCTCTCCCTAAGCACTAGTGGAGCA
1 TCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* * *
2038 GATCGAAGAAGACAAATTTTATCTTTCCAACTTAGTGGGAAGCAGATTTAAGTCACCAAGCATTG
66 GATCGAAGACGACAAATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATTG
2103 TC
131 TC
* * *
2105 TCCCTGAGCTGCAGTGGAATGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
1 TCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* *
2170 GATCGAAGACGACAAATCTTATCTTTCCAACATAGCGGGAAGCCGATTTAAGTCACCAAGCATTG
66 GATCGAAGACGACAAATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATTG
2235 TC
131 TC
* * * * * *
2237 TCCCTTAG-AGAAGCGGAGCGGGTTGAAAGTTCTAGATCTTATCTCCCTAAGCAGTAGTGGAGCT
1 TCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* * * * * * * *
2301 GATCGAAGACGACAAATCTTATATTTGCAAGATAG-GGGAAAGTAAATTTAAGCCACCTAGCCTT
66 GATCGAAGACGACAAATCTTATCTTTCCAACATAGTGGG-AAGCAGATTTAAGTCACCAAGCATT
2365 GTC
130 GTC
* * *
2368 CCCCTGAGCAGC-GCCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGTAGTAGTGGAGC
1 TCCCTGAGCAGCAG-CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGC
* *
2432 AGACCGAAGACGGCAAATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATT
65 AGATCGAAGACGACAAATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATT
2497 GTC
130 GTC
* * * *
2500 CCCCTTA-CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCGGTAGTGGAGCA
1 TCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
2564 GATC
66 GATC
2568 NNNNNNNNNN
Statistics
Matches: 521, Mismatches: 67, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
130 3 0.01
131 282 0.54
132 233 0.45
133 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (132 bp):
TCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
GATCGAAGACGACAAATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATTG
TC
Found at i:2309 original size:263 final size:263
Alignment explanation
Indices: 1842--2567 Score: 1046
Period size: 263 Copynumber: 2.8 Consensus size: 263
1832 NNNNNNNNNN
* * *
1842 TCCCTGAGCAGCAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTATGCCGTAGTGGAGCA
1 TCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* * *
1907 GATCGAAGACGGCAAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTG
66 GATCGAAGACGGCAAATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATTG
* * * *
1972 TCT-CCTGAGCAGGAGCGGAGTGGGTTGAAAATTGTAGATCTTCTCTCCCTAAGCACTAGTGGAG
131 TCTCCCTTAG-AGAAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAG
* * * * *
2036 CAGATCGAAGAAGACAAATTTTATCTTTCCAACTTAGTGGG-AAGCAGATTTAAGTCACCAAGCA
195 CAGATCGAAGAAGACAAATCTTATATTTCCAACATAG-GGGAAAGCAAATTTAAGCCACCAAGCA
2100 TTGTC
259 TTGTC
* * *
2105 TCCCTGAGCTGCAGTGGAATGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
1 TCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* * *
2170 GATCGAAGACGACAAATCTTATCTTTCCAACATAGCGGGAAGCCGATTTAAGTCACCAAGCATTG
66 GATCGAAGACGGCAAATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATTG
* * *
2235 TCTCCCTTAGAGAAGCGGAGCGGGTTGAAAGTTCTAGATCTTATCTCCCTAAGCAGTAGTGGAGC
131 TCTCCCTTAGAGAAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGC
* * * * * * *
2300 TGATCGAAGACGACAAATCTTATATTTGCAAGATAGGGGAAAGTAAATTTAAGCCACCTAGCCTT
196 AGATCGAAGAAGACAAATCTTATATTTCCAACATAGGGGAAAGCAAATTTAAGCCACCAAGCATT
2365 GTC
261 GTC
* * *
2368 CCCCTGAGCAGC-GCCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGTAGTAGTGGAGC
1 TCCCTGAGCAGCAG-CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGC
*
2432 AGACCGAAGACGGCAAATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATT
65 AGATCGAAGACGGCAAATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATT
* * *
2497 GTCCCCCTTACAGCAA-CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCGGTAGTGGA
130 GTCTCCCTTAGAG-AAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGA
2561 GCAGATC
194 GCAGATC
2568 NNNNNNNNNN
Statistics
Matches: 411, Mismatches: 48, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
262 4 0.01
263 400 0.97
264 7 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (263 bp):
TCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
GATCGAAGACGGCAAATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATTG
TCTCCCTTAGAGAAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGC
AGATCGAAGAAGACAAATCTTATATTTCCAACATAGGGGAAAGCAAATTTAAGCCACCAAGCATT
GTC
Found at i:2980 original size:44 final size:44
Alignment explanation
Indices: 2931--3247 Score: 128
Period size: 44 Copynumber: 7.2 Consensus size: 44
2921 AAAATTTTAG
2931 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
* * * * * **
2975 GTCTTATCTTTCC-AA-TA-TAGTGGGAAGCAGATCTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAGACGGCAA
** * * * * ** * * * ** ***
3019 GCCTTGTCTCCCTAAGCAGCAGCGAAGTGGGTAGAAAATTGTTG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
*
3063 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
* * * ** * * *
3107 ATCTTATCTTTCCT-TG-A-TAGTGGGAAGCATATTTAAGTC-ACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAGACGGCAA
* * * * * * ** *
3150 ACCTTTGTCTCCCTAAGCAGCAGCGGAG-TGAGTCGAAAATTGTAA
1 ATC-TTATCTCCCTAAGCAGTAGTGGAGCAGA-TCGAAGACGGCAA
*
3195 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
3239 ATCTTATCT
1 ATCTTATCT
3248 TTTCAAGATA
Statistics
Matches: 180, Mismatches: 77, Indels: 32
0.62 0.27 0.11
Matches are distributed among these distances:
42 8 0.04
43 18 0.10
44 133 0.74
45 17 0.09
46 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
Found at i:4430 original size:44 final size:44
Alignment explanation
Indices: 4382--4566 Score: 115
Period size: 44 Copynumber: 4.2 Consensus size: 44
4372 AAAATTTTAG
4382 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * * **
4426 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCAA
** * * * * ** * * ** * *
4470 GCCTTGTCTCCCTGAGCAGGAGCGGAGTGGGTTGAAAATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * * *
4514 ATCTTCTCTCCCTAAGCACTAGTGGAGCAGATCGAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
4558 ATCTTATCT
1 ATCTTATCT
4567 TTCCAAGATA
Statistics
Matches: 94, Mismatches: 41, Indels: 12
0.64 0.28 0.08
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 76 0.81
45 6 0.06
46 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
Found at i:4796 original size:132 final size:132
Alignment explanation
Indices: 2766--4793 Score: 3044
Period size: 132 Copynumber: 15.4 Consensus size: 132
2756 NNNNNNCTCA
* **
2766 CTGAGCAGCAGCGGAGTCGGTTGAAAATTGTAGATCTTATCTCCCTAAGTTGTAGTGGAGCAGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
*
2831 CGAAGACAACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG-CTACCAAGCCTTGTC
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTC-ACCAAGCCTTGTC
2895 TCC
130 TCC
* * *
2898 CTGAGCAGCAGTGTAGTGGGTTGAAAATTTTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * * * *
2963 CGAAGACGGCAAGTCTTATCTTTCCAATATAGTGGGAAGCAGATCTAAGCCACCAAGCCTTGTCT
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCT
3028 CC
131 CC
* * * * *
3030 CTAAGCAGCAGCGAAGTGGGTAGAAAATTGTTGATCTTATCTCCCTAAGCAGTAGTGGAGTAGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* ** *
3095 CGAAGACGGCAAATCTTATCTTTCCTTGATAGTGGGAAGCATATTTAAGTCACCAA-CCTTTGTC
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCC-TTGTC
3159 TCC
130 TCC
* * * *
3162 CTAAGCAGCAGCGGAGTGAGTCGAAAATTGTAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* *
3227 CGAAGACGACAAATCTTATCTTTTCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCT
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCT
*
3292 CT
131 CC
* *
3294 CTGAGCAGCAGCGGAGTGGGTTGAAAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * * *
3359 CGAAGACGACAAATCTTATATTTCCAAGATAG-GGGAAAGCAAATTTAAGCCACCTAGCCTTGTC
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGG-AAGCAGATTTAAGTCACCAAGCCTTGTC
*
3423 CCC
130 TCC
* *
3426 CTGAGCAGC-GCCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCTGTAGTGGAGCAGA
1 CTGAGCAGCAG-CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* ** * * *
3490 CCGAAGACGGTAATTCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAA-CCATGTT
65 TCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTG-T
*
3554 CCCC
129 CTCC
* *
3558 CT-AACAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * ** * * *
3622 CGTAGACGGCAAATCTGCTCTTTCCAGGATAGTGGGAAACAGATTTAAGCCACCAAGCCTTGTCT
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCT
3687 CC
131 CC
* *
3689 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCCCTAAGTAGTAGTGGAGCAGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * * *
3754 CGAAGACGGCAAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTTT
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCT
3819 CC
131 CC
*
3821 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCACAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
** * * * *
3886 TAAAGGCGGCAAATCTTATCTTTTCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGACT
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCT
3951 CC
131 CC
* * *
3953 CTGAGCAGCAGCGGAGTGGGTTGAAATTTGTAGATCTTACCTCCCTAAGCAGTAGTGGAGCCGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * *
4018 CGAAGATGACAAATCTTATCTTTCCAAGATAGGGGGAAGTAGATTTAA-TCAACCAAGCCTTGTC
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTC-ACCAAGCCTTGTC
4082 TCC
130 TCC
* * *
4085 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCGTATGTCCCTAAGCAGTAGTGGAGCTGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * * *
4150 CGAAGACGACAAATCTTATATTTTCGAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCT
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCT
4215 CC
131 CC
* *
4217 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTCTCTCCCTAAGCACTAGTGGAGCAGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
*
4282 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCT
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCT
4347 CC
131 CC
* *
4349 ATGAGCAGCAGCGGAGTGGGTTGAAAATTTTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * *
4414 TGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCT
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCT
4479 CC
131 CC
* * *
4481 CTGAGCAGGAGCGGAGTGGGTTGAAAATTGTAGATCTTCTCTCCCTAAGCACTAGTGGAGCAGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* *
4546 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATATAAGTCACCAAGCATTGTCT
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCT
*
4611 CA
131 CC
* * *
4613 CTGAGCAGTAGCGGAGTGGGTTGAAAATTGAAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGAT
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * * *
4678 CGAAGACAACAAATCTTATCTTTCCAAGACAGTGGGAAGCAGGTTTAAGTCACCAAGCATTGTCT
66 CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCT
4743 CC
131 CC
*
4745 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGAAGATCTTATCTCCCTAAG
1 CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
4794 TAG
Statistics
Matches: 1717, Mismatches: 167, Indels: 24
0.90 0.09 0.01
Matches are distributed among these distances:
131 121 0.07
132 1589 0.93
133 7 0.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (132 bp):
CTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
CGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCT
CC
Done.