Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_751 ID=scaffold_751-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4064
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Found at i:3065 original size:143 final size:143
Alignment explanation
Indices: 2807--3091 Score: 552
Period size: 143 Copynumber: 2.0 Consensus size: 143
2797 TGCTCTAATA
2807 TATTGGGCTGCAATTTTTTCATCTGACATAAACAATTGAATATCTTTTTAAATTTTATTGCACGA
1 TATTGGGCTGCAATTTTTTCATCTGACATAAACAATTGAATATCTTTTTAAATTTTATTGCACGA
*
2872 GTTTTTAGATAAAGCTCATTTTTGAGGAGGTGAAAAATCATGCCCTAACTCATTGGGTATGATAT
66 GTTTTTAGACAAAGCTCATTTTTGAGGAGGTGAAAAATCATGCCCTAACTCATTGGGTATGATAT
2937 TTTCTCTCTCTAT
131 TTTCTCTCTCTAT
*
2950 TATTGGGCTGCAATTTTTTCATCTGACATAAACAATTGAATATCTTTTTAAATTTTATTGCATGA
1 TATTGGGCTGCAATTTTTTCATCTGACATAAACAATTGAATATCTTTTTAAATTTTATTGCACGA
3015 GTTTTTAGACAAAGCTCATTTTTGAGGAGGTGAAAAATCATGCCCTAACTCATTGGGTATGATAT
66 GTTTTTAGACAAAGCTCATTTTTGAGGAGGTGAAAAATCATGCCCTAACTCATTGGGTATGATAT
3080 TTTCTCTCTCTA
131 TTTCTCTCTCTA
3092 AAAGGAGAAG
Statistics
Matches: 140, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 140 1.00
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (143 bp):
TATTGGGCTGCAATTTTTTCATCTGACATAAACAATTGAATATCTTTTTAAATTTTATTGCACGA
GTTTTTAGACAAAGCTCATTTTTGAGGAGGTGAAAAATCATGCCCTAACTCATTGGGTATGATAT
TTTCTCTCTCTAT
Done.