Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_755 ID=scaffold_755-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4552
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.31

Warning! 518 characters in sequence are not A, C, G, or T


Found at i:125 original size:31 final size:31

Alignment explanation


    Indices: 90--152  Score: 126
    Period size: 31  Copynumber: 2.0  Consensus size: 31

         80 ATGTCTGTTA

                                           
         90 TATCTTTATTTATTCCTAGTTTGTGTGGCTT
          1 TATCTTTATTTATTCCTAGTTTGTGTGGCTT

                                           
        121 TATCTTTATTTATTCCTAGTTTGTGTGGCTT
          1 TATCTTTATTTATTCCTAGTTTGTGTGGCTT

             
        152 T
          1 T

        153 CTTTATACTA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.13, C:0.13, G:0.16, T:0.59


Consensus pattern (31 bp):   
TATCTTTATTTATTCCTAGTTTGTGTGGCTT
Done.