Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_763 ID=scaffold_763-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5388
ACGTcount: A:0.25, C:0.14, G:0.13, T:0.22

Warning! 1449 characters in sequence are not A, C, G, or T


Found at i:3900 original size:31 final size:31

Alignment explanation


    Indices: 3864--3933  Score: 81
    Period size: 31  Copynumber: 2.3  Consensus size: 31

       3854 ACCGTTTCTA

                         *         *         
       3864 TGTGTGAACTAAAGGAAA-TGATCAGGCCTT-G
          1 TGTGTGAAC-AAACGAAATTGA-AAGGCCTTAG

                      *                    
       3895 TGTGTGAACACACGAAATTGAAAGGCCTTAG
          1 TGTGTGAACAAACGAAATTGAAAGGCCTTAG

                    
       3926 TGTGTGAA
          1 TGTGTGAA

       3934 GGGAACATTT


Statistics
Matches: 34,  Mismatches: 3, Indels: 4
        0.83            0.07        0.10

Matches are distributed among these distances:
  30   13  0.38
  31   21  0.62

ACGTcount: A:0.33, C:0.13, G:0.29, T:0.26


Consensus pattern (31 bp):   
TGTGTGAACAAACGAAATTGAAAGGCCTTAG
Done.