Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_794 ID=scaffold_794-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4988
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.20
Warning! 1314 characters in sequence are not A, C, G, or T
Found at i:373 original size:132 final size:132
Alignment explanation
Indices: 107--2459 Score: 3262
Period size: 132 Copynumber: 17.7 Consensus size: 132
97 CAAAAGCAAT
* * *
107 TAGTGGGAGTAGGGTTGAAAGATTACAAGATTCTGTCATCCTAAAACAGTAAGTGGAGCAGATCG
1 TAGT-GGAGTA-GGTTG-AAGATTGC-AGATTCTGTCACCCT-AAGCAGT-AGTGGAGCAGATCG
* * * *
172 AAATATGATGAATCTTATTCTTTCCCAAATACAATGGAGAAGCAGATTTAAGCCCTTTAGTCCTA
60 -AAGATGGTGAATCTTA-TC-TTCCC-AATACAGTGGAGAAGCAGATTTAAG-CCATTAGTCCTA
237 TCACCCTAAGCAG
120 TCACCCTAAGCAG
* *
250 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCCCCCTAAGCAGTAGTGGAGCAGATCCAAGATG
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* * * *
315 GTGAATCTTATCTTCCCAATATAGTAGAGAAGCAGATTTAAGCCATTAGTCCTTTCACCCAAAGC
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
380 AG
131 AG
* * * *
382 TACTGGTGTAGGTTGAAGATTGCAGATTCTGTCACTCTAAGCAGTAGTGAAGCAGATCGAAGATG
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* *
447 GTGAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGCCATTAGTTCTATCACCCTAAGC
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
512 AG
131 AG
*
514 TACG-GGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTACGCAGTAGTGGAGCAGATCGAAGAT
1 TA-GTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
* *
578 GGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCAATCATCCTAAG
65 GGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAG
*
643 CAA
130 CAG
* * * * * *
646 TAGCGGAGTCGGTTGAAGATTGCAGATTCTTTCACCCTAACCAGTAGTGATAG-TGATCGAAGAT
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG-GAGCAGATCGAAGAT
* * *
710 GGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAA-CTCATTGGTCCTATCTCCCTAA
65 GGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC-CATTAGTCCTATCACCCTAA
774 GCAG
129 GCAG
* * *
778 TAGTGGAGTAGGTTCAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATT
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* * *
843 GTGAATGTTATCTTCCCAATACAGTGGAGAAGCTGATTTAAGTCATTAGTCCTATCACCCTAAGC
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
908 AG
131 AG
** * * * *
910 TAGTGGAGTAGGTTGAAGATTATAGATTCTGTCGCCCTAAACAGTAGTGGAGCAGAACGAATATG
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* * * * * *
975 ATAAATCTTATCTTCCCAATACAGTGGAGAAGGAGATTTAAACCATTAGTCCAATTACCCTAAGC
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
1040 AG
131 AG
* * * *
1042 TACTGGAGTAGGTTGAAGATTGCAGATTCTATCACCCTAAGCAGTAATGGAGCTGATCGAAGATG
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* * *
1107 GTGAATCATATCTTCCCAATACAGTGGAGAAACAGATTTAAGTCATTAGTCCTATCACCCTAAGC
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
*
1172 AA
131 AG
* * * *
1174 TAGTGGAGTAGGTTGAAGATTGCAGATTTTGTCACCCTAAGCAGTTGTGCAGCGGATCGAAGAT-
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* * * * * * * * *
1238 GTCGAATCATATCTTCTCAAGATAGTGGAGAAGCAGATGTAAGCCATTAGTTCAATCTCTCTAAG
66 GT-GAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAG
1303 CAG
130 CAG
* * * * *
1306 TAGTGGAGTAGGTTGAAGATTGAAGATTTTGTCACCCTAAGCAGTAATGAAGTAGATCGAAGATG
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* * * * * * *
1371 GTGAATCTTATCCTCCCAATACAGTAGAGAAGCAGATTTAAGCCGTTAGACCTATCTCCCAAAGT
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
1436 AG
131 AG
* * *
1438 TAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATCGAATATG
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* *
1503 ATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTATGC
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
1568 AG
131 AG
* * *
1570 TAGTGGAGTAGGTTAAAGAGTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGATG
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
*
1635 GTGAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
1700 AG
131 AG
* * *
1702 TACTGGTGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGATG
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* *
1767 GTGAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTACGCCATTAGTCCTATCACCCTAAGC
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
1832 AG
131 AG
* *
1834 TACG-AGAGTAGGTTGAAGATTCCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 TA-GTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
* * * *
1898 GGTGAATCTTATCTTCCCAATACAGTCGAGAAGCAGATTTAAGCCATTAATCTTATCATCCTAAG
65 GGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAG
*
1963 CAA
130 CAG
* * * * * *
1966 TAGTGGAGTCGGTTGAAGATTACAGATTCTGTCACCATAACCAGTAG-GGATGGAGATCAAAGAT
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGAT
* * *
2030 GGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAA-CTCATTGGTCCTATCTCCCTAA
65 GGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC-CATTAGTCCTATCACCCTAA
2094 GCAG
129 GCAG
* *
2098 TAGTGGAGTAGGTTCAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* * *
2163 GTGAATGTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGTCATTAGTCCTACCACCCTAAGC
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
2228 AG
131 AG
* * * * *
2230 TAGTGGAGTAGGTTGAAGATTGCAGATTTTGTCACCCTAAGTAGTTGTGCAGCATATCGAAGATG
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* * * * * * * * *
2295 GTGAATCATATCTTCTCAAGATAGTGGAGAAGCAGATGTAAGCCTTTAGTTCAATCTCCCTAAGC
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
2360 AG
131 AG
* * *
2362 TAGTGGAGTAGGTTAAAGTTTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATG
1 TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* *
2427 GTCAATCTTATCTTCCCAATACAGTAGAGAAGC
66 GTGAATCTTATCTTCCCAATACAGTGGAGAAGC
2460 NNNNNNNNNN
Statistics
Matches: 1956, Mismatches: 240, Indels: 39
0.88 0.11 0.02
Matches are distributed among these distances:
131 11 0.01
132 1841 0.94
133 29 0.01
134 5 0.00
135 2 0.00
136 14 0.01
137 13 0.01
138 6 0.00
139 13 0.01
140 7 0.00
141 5 0.00
142 6 0.00
143 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
TAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
GTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGC
AG
Found at i:4364 original size:399 final size:396
Alignment explanation
Indices: 3607--4472 Score: 1150
Period size: 399 Copynumber: 2.2 Consensus size: 396
3597 NNNTGGAGCG
* * * *
3607 GATCGAAGATGGTGAATCATT-TC-CCCTCAAAATAGTGGAGAATCAGATTTAAGCCATTAGTCC
1 GATCGAAGATGGTGAATC-TTATCTTCC-CAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
* * *
3670 TATCACCCTAAGCAGTACTGGTGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGA
64 TATCTCCCTAAGCAGTACTGGAGTAGGTTCAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGA
* * * *
3735 AGCAGATCGAGGATGGTGAATCTTATCTTCCTAATATAGTGGAGAAGCAGATTTACGCCATTAGT
129 AGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGT
*
3800 CCTATCACCCTAAGCAGTACGGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGT
194 CCTATCACCCTAAGCAGTACGGGAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGT
** * * * *
3865 GGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAAATTTAAGCCATTA
259 ACAGCAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTGGAGAAGCAAATGTAAGCCATTA
* ** * *
3930 GTCTTATCATCCTAAGGGGGAGTGGAGTCGGTTGAAGGGGGAGAAAGATTCTGTCACCCTAACCA
324 GTCTAATCATCCTAAGCAGGAATGGAGTAGGTTGAA--GGGAG-AAGATTCTGTCACCCTAACCA
3995 GTAGT-GATGGA
386 GTAGTGGA-GGA
* * *
4006 GATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAAGTCATTGGTCCTA
1 GATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTA
* * *
4071 TCTCCCTAAGCAGTAGTGGAGTTGGTTCAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
66 TCTCCCTAAGCAGTACTGGAGTAGGTTCAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAG
* * *
4136 CAGATCGAAGATGGTGAATGTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGTCATTAGTTC
131 CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
* *
4201 TATCACCCTAAGCAGTA-GTGGAATAGGTTGAAGATTGCAGATTTTGTCACCCTAAGCAGTTGTA
196 TATCACCCTAAGCAGTACG-GGAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTA
* * * * *
4265 CAGCATATCGAAGATTGTGAATCATATCTTCTCAAGATAGTGGAGAAGCAGATGTAAGCCATTAG
260 CAGCAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTGGAGAAGCAAATGTAAGCCATTAG
* *** * *
4330 T-TCAATC-TCCCTAAGCAGTAATGGAGTAGGTTGAAGTTTGTAGATTCTGTCACCCTAAGCAGT
325 TCT-AATCAT-CCTAAGCAGGAATGGAGTAGGTTGAAGGGAGAAGATTCTGTCACCCTAACCAGT
*
4393 AGTGGAGTA
388 AGTGGAGGA
* * * * *
4402 GATCGAAGATGGTCAATCTTATCTTCCTAATACAGTAGAGAAGTAGATTTAAGCCATTAGACCTA
1 GATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTA
4467 TCTCCC
66 TCTCCC
4473 AAAGTANNNN
Statistics
Matches: 407, Mismatches: 54, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
396 89 0.22
397 4 0.01
398 5 0.01
399 307 0.75
400 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (396 bp):
GATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTA
TCTCCCTAAGCAGTACTGGAGTAGGTTCAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAG
CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
TATCACCCTAAGCAGTACGGGAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTAC
AGCAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTGGAGAAGCAAATGTAAGCCATTAGT
CTAATCATCCTAAGCAGGAATGGAGTAGGTTGAAGGGAGAAGATTCTGTCACCCTAACCAGTAGT
GGAGGA
Found at i:4470 original size:132 final size:132
Alignment explanation
Indices: 3600--4472 Score: 1108
Period size: 132 Copynumber: 6.6 Consensus size: 132
3590 NNNNNNNNNN
* * * * *
3600 TGGAGCGGATCGAAGATGGTGAATCATT-TC-CCCTCAAAATAGTGGAGAATCAGATTTAAGCCA
1 TGGAGCAGATCGAAGATGGTGAATC-TTATCTTCC-CAATACAGTGGAGAAGCAGATTTAAGCCA
* * *
3663 TTAGTCCTATCACCCTAAGCAGTACTGGTGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
64 TTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
3728 GTAG
129 GTAG
* * * * *
3732 TGAAGCAGATCGAGGATGGTGAATCTTATCTTCCTAATATAGTGGAGAAGCAGATTTACGCCATT
1 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATT
*
3797 AGTCCTATCACCCTAAGCAGTACG-GGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAG
66 AGTCCTATCTCCCTAAGCAGTA-GTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAG
3861 TAG
130 TAG
* *
3864 TGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAAATTTAAGCCATT
1 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATT
* ** * * *** * *
3929 AGTCTTATCAT-CCTAAGGGGGAGTGGAGTCGGTTGAAGGGGGAGAAAGATTCTGTCACCCTAAC
66 AGTCCTATC-TCCCTAAGCAGTAGTGGAGTAGGTTGAA--GATTG-CAGATTCTGTCACCCTAAG
3993 CAGTAG
127 CAGTAG
* * *
3999 T-GATGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAAGTCAT
1 TGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCAT
* * *
4063 TGGTCCTATCTCCCTAAGCAGTAGTGGAGTTGGTTCAAGATTGCAGATTCTGTCACCCTAAGCAG
65 TAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAG
4128 TAG
130 TAG
* *
4131 TGGAGCAGATCGAAGATGGTGAATGTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGTCATT
1 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATT
* * * *
4196 AGTTCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGATTTTGTCACCCTAAGCAGT
66 AGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGT
*
4261 TG
131 AG
** * * * * * * *
4263 TACAGCATATCGAAGATTGTGAATCATATCTTCTCAAGATAGTGGAGAAGCAGATGTAAGCCATT
1 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATT
* * * * *
4328 AGTTCAATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGTTTGTAGATTCTGTCACCCTAAGCAGT
66 AGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGT
4393 AG
131 AG
* * * * *
4395 TGGAGTAGATCGAAGATGGTCAATCTTATCTTCCTAATACAGTAGAGAAGTAGATTTAAGCCATT
1 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATT
*
4460 AGACCTATCTCCC
66 AGTCCTATCTCCC
4473 AAAGTANNNN
Statistics
Matches: 639, Mismatches: 91, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
131 3 0.00
132 516 0.81
133 6 0.01
134 5 0.01
135 109 0.17
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (132 bp):
TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATT
AGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGT
AG
Found at i:4892 original size:132 final size:132
Alignment explanation
Indices: 4655--4988 Score: 560
Period size: 132 Copynumber: 2.5 Consensus size: 132
4645 NNNNNNNNCT
*
4655 GTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAAGAAGATTTAAGC
1 GTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGC
* * *
4720 CATTAGTCCTATCACCCTAAGCAGTACTGGTGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTACGGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAG
4785 CA
131 CA
* * *
4787 GTAGTGAAGCAGATCGAAGATGGTAAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGC
*
4852 CATTAGTCCTATCACCCTAAGCAGTACGGGAGTAGGTTGAAGATTACAGATTCTGTCACTCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTACGGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAG
4917 CA
131 CA
** * *
4919 GTAGTGGAGCAGATCAAACTTGGTGAATCTTATCTTCCCTATACAGTGGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGC
4984 CATTA
66 CATTA
Statistics
Matches: 187, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 187 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
GTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGC
CATTAGTCCTATCACCCTAAGCAGTACGGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAG
CA
Done.