Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_797 ID=scaffold_797-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3620
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:819 original size:29 final size:29

Alignment explanation


    Indices: 777--836  Score: 120
    Period size: 29  Copynumber: 2.1  Consensus size: 29

        767 CCTCGATACA

                                         
        777 TAACTAATTAGTCTCGAGACAATTGCTCC
          1 TAACTAATTAGTCTCGAGACAATTGCTCC

                                         
        806 TAACTAATTAGTCTCGAGACAATTGCTCC
          1 TAACTAATTAGTCTCGAGACAATTGCTCC

              
        835 TA
          1 TA

        837 GGTTTCGGGA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32


Consensus pattern (29 bp):   
TAACTAATTAGTCTCGAGACAATTGCTCC

Found at i:3426 original size:5 final size:5

Alignment explanation


    Indices: 3416--3444  Score: 58
    Period size: 5  Copynumber: 5.8  Consensus size: 5

       3406 TTCTCTTACC

                                              
       3416 AAATA AAATA AAATA AAATA AAATA AAAT
          1 AAATA AAATA AAATA AAATA AAATA AAAT

       3445 CCCCTTACCT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21


Consensus pattern (5 bp):   
AAATA

Done.