Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_808 ID=scaffold_808-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4068
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.26

Warning! 496 characters in sequence are not A, C, G, or T


Found at i:3130 original size:30 final size:30

Alignment explanation


    Indices: 3094--3153  Score: 95
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       3084 GTATATGTAA

                                 *         
       3094 AATATCCGTTTTAT-CTAAAGCGATTTGTTT
          1 AATATCCGTTTTATGC-AAAGAGATTTGTTT

                                          
       3124 AATATCCGTTTTATGCAAAGAGATTTGTTT
          1 AATATCCGTTTTATGCAAAGAGATTTGTTT

       3154 TCTAGTAAAG


Statistics
Matches: 28,  Mismatches: 1, Indels: 2
        0.90            0.03        0.06

Matches are distributed among these distances:
  30   27  0.96
  31    1  0.04

ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45


Consensus pattern (30 bp):   
AATATCCGTTTTATGCAAAGAGATTTGTTT
Done.