Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_809 ID=scaffold_809-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5134
ACGTcount: A:0.23, C:0.11, G:0.14, T:0.21

Warning! 1621 characters in sequence are not A, C, G, or T


Found at i:3274 original size:23 final size:23

Alignment explanation


    Indices: 3177--3267  Score: 148
    Period size: 23  Copynumber: 4.0  Consensus size: 23

       3167 GTATTATTGA

                                *  
       3177 TCAGTGGTAGCTTCGGCTACGTT
          1 TCAGTGGTAGCTTCGGCTACATT

                                   
       3200 TCAGTGGTAGCTTCGGCTACATT
          1 TCAGTGGTAGCTTCGGCTACATT

                                   *
       3223 TCAGTGGTAGCTTCGGCTACATAA
          1 TCAGTGGTAGCTTCGGCTACAT-T

                                  
       3247 T-AGTGGTAGCTTCGGCTACAT
          1 TCAGTGGTAGCTTCGGCTACAT

       3268 ATTAGTGTTG


Statistics
Matches: 65,  Mismatches: 2, Indels: 2
        0.94            0.03        0.03

Matches are distributed among these distances:
  23   64  0.98
  24    1  0.02

ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33


Consensus pattern (23 bp):   
TCAGTGGTAGCTTCGGCTACATT
Done.