Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_815 ID=scaffold_815-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5143
ACGTcount: A:0.19, C:0.11, G:0.12, T:0.26

Warning! 1680 characters in sequence are not A, C, G, or T


Found at i:1740 original size:16 final size:16

Alignment explanation


    Indices: 1719--1751  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1709 CAGCTGTAAG

                            
       1719 TGTTCTTAACAATTCT
          1 TGTTCTTAACAATTCT

                            
       1735 TGTTCTTAACAATTCT
          1 TGTTCTTAACAATTCT

             
       1751 T
          1 T

       1752 TGCTTCTCTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.24, C:0.18, G:0.06, T:0.52


Consensus pattern (16 bp):   
TGTTCTTAACAATTCT
Done.