Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_822 ID=scaffold_822-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3406
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31


Found at i:2632 original size:16 final size:16

Alignment explanation


    Indices: 2611--2641  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       2601 CCACATGGAA

                            
       2611 TCTCTTTATTTCGAAC
          1 TCTCTTTATTTCGAAC

                           
       2627 TCTCTTTATTTCGAA
          1 TCTCTTTATTTCGAA

       2642 ACCTCGCTAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.19, C:0.23, G:0.06, T:0.52


Consensus pattern (16 bp):   
TCTCTTTATTTCGAAC
Done.