Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_824 ID=scaffold_824-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3388
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Found at i:282 original size:132 final size:132
Alignment explanation
Indices: 71--2670 Score: 3489
Period size: 132 Copynumber: 19.7 Consensus size: 132
61 AGTTAGCTTT
* *
71 CACTACTGCTTAGGGTTACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGCTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
136 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
*
201 TT
131 TC
* * * *
203 CACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCAATACTGCTTAGGGTGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * *
268 GACTAATGGTTTAAATCTGCTTCTCCACTGTATTGGGAAGATATGATTCACCATCGTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
333 TC
131 TC
* * *
335 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * * * * * **
400 GACTAGTAGCATAAATCTGCTTCTCCACTGCATTGGGAAAATAAGATTCATCATATTTAATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
*
465 TT
131 TC
* * * * * * *
467 CACTACTGCTTAGGGTAACAGAATCTGTAATCTTAAACCGACTCCACTACTTCTTAGGGAGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* *
532 GACAAATGGCTTAAATCTGCTTC-CCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTA
66 GACTAATGGCTTAAATCTGCTTCTCC-ACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTG
596 CTC
130 CTC
* *
599 CACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTACTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * * *
664 GACTAATGGCTTAAATCTGCTACTCCACTGTTTTGGGAAAATAAGATTCATCATATTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
*
729 TT
131 TC
* * * * * *
731 TACTACTGTTTAGGGTGACAGAATCTGCAATCATCAACCAATTCCACTA-TGGCTTAGGGAGATA
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATA
* * *
795 GGACTAATTGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCTA
65 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTG
*
860 TTC
130 CTC
* * *
863 CAAC-ACTGCTTATGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGAGA
1 C-ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
** * * * *
927 GGACTAATAACTTAAATCTGCTTCTCCACTGTATTGGGACGATAGGATTCACGATCGTCGATCTG
65 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTG
992 CTC
130 CTC
* * ** * * * *
995 CACTACTACTT-GGGTGGCAGAATCCCCAATCTTTAGCCTACTCTACTGCTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * ** *
1059 GACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACAAAATTCAATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
1124 TC
131 TC
* * *
1126 CACTACTGCTTAGGGTGACACAATCTACAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * * *
1191 GACTAATGGCTTAAATCTGCTTCTCAACTATATTGGGAAGATAAGATTCACCATCATCTATCTAC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
1256 TC
131 TC
* *
1258 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTAGTACTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * *
1323 GACTAATGACTTAAATCCGCTTCTCCACTGTATT-GGAAGATAAGATATC-CCATCTTCGATTTG
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT-TCACCATCTTCGATCTG
1386 CTC
130 CTC
* * * * *
1389 CACTAATGCTTAGGGTGAGAGAATCTGTAATCTTTAACCTACTCCACTACTGCTTTGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* *** * *
1454 GACTAATGGCTT-ATTCAAATATCTCCACTGTATTGGGAA-AGTAAGATTCATCATATTCGATCT
66 GACTAATGGCTTAAATCTGCT-TCTCCACTGTATTGGGAAGA-TAAGATTCACCATCTTCGATCT
*
1517 GCTT
129 GCTC
* * * * *
1521 CACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCAATTGCACTA-TGGCTTAGGGAGATA
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATA
* *
1585 GGACAAATGGCTTAAAGT-TGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCT
65 GGACTAATGGCTTAAA-TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCT
*
1649 ACTC
129 GCTC
* * * * *
1653 CACTACAGCTCAGGGTGACAGAATCTGCAATCTTCAGCCTACTCTACTGCTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* *
1718 GACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATATTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
1783 TC
131 TC
* *
1785 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGTGTGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * *
1850 GACTAATGGCTTAAATCTGGTTCTCCACTGT-TTGGGAAGATAAGATTCACCATCATCGATCCGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
1914 TC
131 TC
* * ** * * * *
1916 CACTACTTCCTAGGGTGACAGAATCTATAATCTTCAACCTATTCCTCTACTGCTTAGGGAGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * ** * *
1981 GACTAATGGCTCAAATCTGCTTCTCCACTATCTTAAGAAGATAAGAATCACCATCTTCGATCCGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
2046 TC
131 TC
* *
2048 CACTACTGCTTAGGGTGACAGAATTTGCAATCTTTAACCTACTCCACTACTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * *
2113 GACTAATGGCTTAAATCTGCTTTTCCAGTGTATTGGGTAGATAAGATTCACCATCTTCGATCTAC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
2178 TC
131 TC
* * * * *
2180 CACTACTGGTTAGGGTGATAGAATCTACAATCTTCAACCGACTCCAATACTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * *
2245 GACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGATATGATTCACCATCGTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
2310 TC
131 TC
* * *
2312 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * * * **
2377 GACTAATAGCTTAAATTTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
*
2442 TT
131 TC
*
2444 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * *
2509 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA-ATTGATATTCATCATATTCGATCTG
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA-TAAGATTCACCATCTTCGATCTG
*
2573 CTT
130 CTC
* * * *
2576 CACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCAATTCCACTA-TGGCTTAGGGAGATA
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATA
* * *
2640 GGACAAATGGCTTAAATCTGTTTCACCACTG
65 GGACTAATGGCTTAAATCTGCTTCTCCACTG
2671 CAATCTTTAA
Statistics
Matches: 2149, Mismatches: 298, Indels: 42
0.86 0.12 0.02
Matches are distributed among these distances:
130 4 0.00
131 346 0.16
132 1789 0.83
133 9 0.00
134 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
TC
Found at i:1286 original size:527 final size:526
Alignment explanation
Indices: 71--2670 Score: 3514
Period size: 527 Copynumber: 4.9 Consensus size: 526
61 AGTTAGCTTT
* *
71 CACTACTGCTTAGGGTTACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGCTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
*
136 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCATCGATCTGC
* * * *
201 TTCACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCAATACTGCTTAGGGTGAT
131 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGAT
* * * *
266 TGGACTAATGGTTTAAATCTGCTTCTCCACTGTATTGGGAAGATATGATTCACCATCGTCGATCT
196 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCT
* * *
331 GCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACGTACTCCACTACTGCTTTGGGTG
261 GCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* * * * **
396 ATAGGACTAGTAGCATAAATCTGCTTCTCCACTGCATTGGGAAAATAAGATTCATCATATTTAAT
326 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGG-AAATAAGATTCATCATATTCGAT
* * * * *
461 CTGCTTCACTACTGCTTAGGGTAACAGAATCTGTAATCTTAAACCGACTCCACTACTTCTTAGGG
390 CTGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACT-CTGCTTAGGG
*
526 AGATTGGACAAATGGCTTAAATCTGCTTC-CCTACTGTATTGGGAAGATAAGATTCACCATCTTC
454 AGATAGGACAAATGGCTTAAATCTGCTTCTCC-ACTGTATTGGGAAGATAAGATTCACCATCTTC
590 GATCTACTC
518 GATCTACTC
* *
599 CACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTACTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * *
664 GACTAATGGCTTAAATCTGCTACTCCACTGTTTTGGGAAAATAAGATTCATCAT-ATTCGATCTG
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCA-TCGATCTG
** * * * * *
728 CTTTACTACTGTTTAGGGTGACAGAATCTGCAATCATCAACCAATTCCACTA-TGGCTTAGGGAG
130 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTG
* *
792 ATAGGACTAATTGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGAT
194 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
** * *
857 CTATTCCAAC-ACTGCTTATGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGG
259 CTGCTCC-ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
* ** * * **
921 GTGAGAGGACTAATAACTTAAATCTGCTTCTCCACTGTATTGGGACGATAGGATTCA-CGATCGT
323 GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA-AATAAGATTCATC-ATATT
* * * ** * * * *
985 CGATCTGCTCCACTACTACTT-GGGTGGCAGAATCCCCAATCTTTAGCCTACTCTACTGCTGCTT
386 CGATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACT-CTGCTT
* * * * **
1049 AGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACAAAA
450 AGGGAGATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC
* *
1114 TTCAATCTGCTC
515 TTCGATCTACTC
* * *
1126 CACTACTGCTTAGGGTGACACAATCTACAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * *
1191 GACTAATGGCTTAAATCTGCTTCTCAACTATATTGGGAAGATAAGATTCACCATCATCTATCTAC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCATCGATCTGC
* *
1256 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTAGTACTTAGGGTGAT
131 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGAT
* * *
1321 AGGACTAATGACTTAAATCCGCTTCTCCACTGTATT-GGAAGATAAGATATC-CCATCTTCGATT
196 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT-TCACCATCTTCGATC
* * * * *
1384 TGCTCCACTAATGCTTAGGGTGAGAGAATCTGTAATCTTTAACCTACTCCACTACTGCTTTGGGT
260 TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
* ***
1449 GATAGGACTAATGGCTT-ATTCAAATATCTCCACTGTATTGGGAAAGTAAGATTCATCATATTCG
325 GATAGGACTAATGGCTTAAATCTGCT-TCTCCACTGTATTGGGAAA-TAAGATTCATCATATTCG
* * * *
1513 ATCTGCTTCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCAATTGCACTATGGCTTAG
388 ATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTCT-GCTTAG
*
1578 GGAGATAGGACAAATGGCTTAAAGT-TGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCT
452 GGAGATAGGACAAATGGCTTAAA-TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
1642 TCGATCTACTC
516 TCGATCTACTC
* * * * *
1653 CACTACAGCTCAGGGTGACAGAATCTGCAATCTTCAGCCTACTCTACTGCTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
*
1718 GACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCAT-ATTCGATCTG
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCA-TCGATCTG
*
1782 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGTGTGA
130 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * *
1847 TTGGACTAATGGCTTAAATCTGGTTCTCCACTGT-TTGGGAAGATAAGATTCACCATCATCGATC
195 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
* * * ** * * *
1911 CGCTCCACTACTTCCTAGGGTGACAGAATCTATAATCTTCAACCTATTCCTCTACTGCTTAGGGA
260 TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
* * * * ** * * *
1976 GATTGGACTAATGGCTCAAATCTGCTTCTCCACTATCTTAAGAAGATAAGAATCACCATCTTCGA
325 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA-ATAAGATTCATCATATTCGA
* * * * *
2041 TCCGCTCCACTACTGCTTAGGGTGACAGAATTTGCAATCTTTAACCTACTCCACTACTGCTTAGG
389 TCTGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACT-CTGCTTAGG
* * * * *
2106 GTGATAGGACTAATGGCTTAAATCTGCTTTTCCAGTGTATTGGGTAGATAAGATTCACCATCTTC
453 GAGATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
2171 GATCTACTC
518 GATCTACTC
* * * * *
2180 CACTACTGGTTAGGGTGATAGAATCTACAATCTTCAACCGACTCCAATACTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * *
2245 GACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGATATGATTCACCATCGTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCATCGATCTGC
* * *
2310 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGAT
131 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGAT
* * * * * **
2375 AGGACTAATAGCTTAAATTTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTTAATCT
196 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCT
* *
2440 GCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTG
261 GCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
* *
2505 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAATTGATATTCATCATATTCGAT
326 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAA-TAAGATTCATCATATTCGAT
* * *
2570 CTGCTTCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCAATTCCACTATGGCTTAGGG
390 CTGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTCT-GCTTAGGG
* *
2635 AGATAGGACAAATGGCTTAAATCTGTTTCACCACTG
454 AGATAGGACAAATGGCTTAAATCTGCTTCTCCACTG
2671 CAATCTTTAA
Statistics
Matches: 1793, Mismatches: 252, Indels: 54
0.85 0.12 0.03
Matches are distributed among these distances:
525 7 0.00
526 142 0.08
527 1059 0.59
528 583 0.33
529 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (526 bp):
CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCATCGATCTGC
TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGAT
AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCT
GCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAATAAGATTCATCATATTCGATC
TGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTCTGCTTAGGGAG
ATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
CTACTC
Found at i:2709 original size:68 final size:68
Alignment explanation
Indices: 2600--2738 Score: 172
Period size: 68 Copynumber: 2.0 Consensus size: 68
2590 GTGACAGAAT
* * *
2600 CTGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCTTAAATCTGTTTCA
1 CTGCAATCTTCAACCAACTCCACTATGGCTTAGGGAGATAGGACAAATAGCTTAAATCTGCTTCA
2665 CCA
66 CCA
* ** * * *
2668 CTGCAATCTTTAACGTACTCCACTACT-GCTTTGGGTGATAGGACTAATAGCTTAAATCTGCTTC
1 CTGCAATCTTCAACCAACTCCACTA-TGGCTTAGGGAGATAGGACAAATAGCTTAAATCTGCTTC
*
2732 TCCA
65 ACCA
2736 CTG
1 CTG
2739 TATTGGGAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
68 59 0.98
69 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (68 bp):
CTGCAATCTTCAACCAACTCCACTATGGCTTAGGGAGATAGGACAAATAGCTTAAATCTGCTTCA
CCA
Found at i:2811 original size:200 final size:200
Alignment explanation
Indices: 2468--2868 Score: 624
Period size: 200 Copynumber: 2.0 Consensus size: 200
2458 GTGACAGAAT
*
2468 CTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCT
1 CTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCT
* * * * *
2533 CCACTGTATTGGGAAATTGATATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAGA
66 CCACTGTATTGGGAAAATAAGATTCATCATATTCAATCTGCTTCACTACTGCTTAGGGTGACAGA
* * *
2598 ATCTGCAATCTTCAACCAATTCCACTA-TGGCTTAGGGAGATAGGACAAATGGCTTAAATCTGTT
131 ATCTACAATCTTCAACCAACTCCACTACT-GCTTAGGGAGATAGGACAAATGGCTTAAATCTGCT
2662 TCACCA
195 TCACCA
* * * *
2668 CTGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCTGCTTCT
1 CTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCT
*
2733 CCACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGACAGA
66 CCACTGTATTGGGAAAATAAGATTCATCATATTCAATCTGCTTCACTACTGCTTAGGGTGACAGA
* * *
2798 ATCTACAATCTTCAACCGACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTT
131 ATCTACAATCTTCAACCAACTCCACTACTGCTTAGGGAGATAGGACAAATGGCTTAAATCTGCTT
*
2863 CTCCA
196 CACCA
2868 C
1 C
2869 CGTATTTGGA
Statistics
Matches: 182, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
200 181 0.99
201 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (200 bp):
CTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCT
CCACTGTATTGGGAAAATAAGATTCATCATATTCAATCTGCTTCACTACTGCTTAGGGTGACAGA
ATCTACAATCTTCAACCAACTCCACTACTGCTTAGGGAGATAGGACAAATGGCTTAAATCTGCTT
CACCA
Found at i:2912 original size:132 final size:131
Alignment explanation
Indices: 2668--3336 Score: 858
Period size: 132 Copynumber: 5.1 Consensus size: 131
2658 TGTTTCACCA
* * * * *
2668 CTGCAATCTTTAA-CGTACTCCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCTGCTTC
1 CTGCAATCTTCAACCG-ACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTC
* ** *
2732 TCCACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGACAG
65 TCCACTGTATTGGGAAAATAAGATTCA-CATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAG
2797 AAT
129 AAT
*
2800 CTACAATCTTCAACCGACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCT
1 CTGCAATCTTCAACCGACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCT
* * ** * *
2865 CCACCGTATTTGGAAGGTAAGATTCAGCATCTTCGATCTACTCCACTACTGCTTAGTGTGACAGA
66 CCACTGTATTGGGAAAATAAGATTCA-CATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGA
2930 AT
130 AT
* * * * * * *
2932 CTGTAATCTTCAACCTACTCAACTGCTACTTAGGGTGATTGGACTAATGGCTTAAATTTGCTTCT
1 CTGCAATCTTCAACCGACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCT
* * *
2997 CCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAGA
66 CCACTGTATTGGGAAAATAAGATTCA-CATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGA
3062 AT
130 AT
* * * * * *
3064 CTGTAATCTTTAACCAATTCCACTA-TGGCTTAGGGAGATAGGGCTAATGGCTTAAATCTGCTTC
1 CTGCAATCTTCAACCGACTCCACTACT-GCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTC
* *
3128 TCCACTGTATTGGGAAAATAAGATTCACTATCTTCGATCTACTCCAATACTGCTTAGGGTGACAG
65 TCCACTGTATTGGGAAAATAAGATTCAC-ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAG
3193 AAT
129 AAT
* * * *
3196 CTGCAATCTTCAACCTACTCCTCTACTGCTTAGGGAGATTAGACTAATGGC-TCAATCTGCTTCT
1 CTGCAATCTTCAACCGACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCT
* * * * * *
3260 CCACTATCTTGAGAAGATAAGAATCACTATCTTCGATCTGCTCCACTACTGCTTAGGGTTACAGA
66 CCACTGTATTGGGAAAATAAGATTCAC-ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGA
3325 AT
130 AT
3327 CTGCAATCTT
1 CTGCAATCTT
3337 AAATCTGCTT
Statistics
Matches: 466, Mismatches: 67, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
131 83 0.18
132 380 0.82
133 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (131 bp):
CTGCAATCTTCAACCGACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCT
CCACTGTATTGGGAAAATAAGATTCACATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAA
T
Found at i:2942 original size:332 final size:332
Alignment explanation
Indices: 2336--2946 Score: 1051
Period size: 332 Copynumber: 1.8 Consensus size: 332
2326 GTGACAGAAT
*
2336 CTGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATTTGCTTCT
1 CTGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCTGCTTCT
2401 CCACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGACAGA
66 CCACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGACAGA
* * *
2466 ATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
131 ATCTACAATCTTCAACCGACTCCACTACTACTTAGGGAGATAGGACTAATGGCTTAAATCTGCTT
* * * * * * * *
2531 CTCCACTGTATTGGGAAATTGATATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACA
196 CTCCACCGTATTGGGAAAGTAAGATTCAGCATATTCGATCTACTCCACTACTGCTTAGGGTGACA
2596 GAATCTGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCTTAAATCTGT
261 GAATCTGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCTTAAATCTGT
2661 TTCACCA
326 TTCACCA
2668 CTGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCTGCTTCT
1 CTGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCTGCTTCT
2733 CCACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGACAGA
66 CCACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGACAGA
* *
2798 ATCTACAATCTTCAACCGACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTT
131 ATCTACAATCTTCAACCGACTCCACTACTACTTAGGGAGATAGGACTAATGGCTTAAATCTGCTT
* * * *
2863 CTCCACCGTATTTGGAAGGTAAGATTCAGCATCTTCGATCTACTCCACTACTGCTTAGTGTGACA
196 CTCCACCGTATTGGGAAAGTAAGATTCAGCATATTCGATCTACTCCACTACTGCTTAGGGTGACA
*
2928 GAATCTGTAATCTTCAACC
261 GAATCTGCAATCTTCAACC
2947 TACTCAACTG
Statistics
Matches: 260, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
332 260 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (332 bp):
CTGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCTGCTTCT
CCACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGACAGA
ATCTACAATCTTCAACCGACTCCACTACTACTTAGGGAGATAGGACTAATGGCTTAAATCTGCTT
CTCCACCGTATTGGGAAAGTAAGATTCAGCATATTCGATCTACTCCACTACTGCTTAGGGTGACA
GAATCTGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCTTAAATCTGT
TTCACCA
Found at i:3081 original size:464 final size:464
Alignment explanation
Indices: 2207--3134 Score: 1421
Period size: 464 Copynumber: 2.0 Consensus size: 464
2197 ATAGAATCTA
2207 CAATCTTCAACCGACTCCAATACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCA
1 CAATCTTCAACCGACTCCAATACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCA
* * * *
2272 CTGTATTGGGAAGATATGATTCACCATCGTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
66 CTGTATTGGGAAAATAAGATTCACCATAGTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATC
* * * * *
2337 TGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATTTGCTTCTC
131 TACAATCTTCAACGTACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGCTTCTC
* * * * *
2402 CACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGACAGAA
196 CACCGTATTGGGAAAATAAGATTCAGCATATTCAATCTACTCCACTACTGCTTAGGGTGACAGAA
*
2467 TCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTC
261 TCTGCAATCTTCAACCTACTCAACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTC
* * *
2532 TCCACTGTATTGGGAAATTGATATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAG
326 TCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAG
*
2597 AATCTGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCTTAAATCTGTT
391 AATCTGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCTTAAATCTGCT
2662 TCACCACTG
456 TCACCACTG
* * *
2671 CAATCTTTAA-CGTACTCCACTACTGCTTTGGGTGATAGGACTAAT-AGCTTAAATCTGCTTCTC
1 CAATCTTCAACCG-ACTCCAATACTGCTTAGGGTGATAGGACTAATGA-CTTAAATCTGCTTCTC
* * * *
2734 CACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGACAGAA
64 CACTGTATTGGGAAAATAAGATTCACCATAGTCAATCTGCTCCACTACTGCTTAGGGTGACAGAA
* *
2799 TCTACAATCTTCAACCG-ACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTT
129 TCTACAATCTTCAA-CGTACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGCTT
* ** * * *
2863 CTCCACCGTATTTGGAAGGTAAGATTCAGCATCTTCGATCTACTCCACTACTGCTTAGTGTGACA
193 CTCCACCGTATTGGGAAAATAAGATTCAGCATATTCAATCTACTCCACTACTGCTTAGGGTGACA
* * * *
2928 GAATCTGTAATCTTCAACCTACTCAACTGCTACTTAGGGTGATTGGACTAATGGCTTAAATTTGC
258 GAATCTGCAATCTTCAACCTACTCAACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGC
2993 TTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGA
323 TTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGA
* * * *
3058 CAGAATCTGTAATCTTTAACCAATTCCACTATGGCTTAGGGAGATAGGGCTAATGGCTTAAATCT
388 CAGAATCTGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCTTAAATCT
*
3123 GCTTCTCCACTG
453 GCTTCACCACTG
3135 TATTGGGAAA
Statistics
Matches: 418, Mismatches: 43, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
463 3 0.01
464 413 0.99
465 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (464 bp):
CAATCTTCAACCGACTCCAATACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCA
CTGTATTGGGAAAATAAGATTCACCATAGTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATC
TACAATCTTCAACGTACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGCTTCTC
CACCGTATTGGGAAAATAAGATTCAGCATATTCAATCTACTCCACTACTGCTTAGGGTGACAGAA
TCTGCAATCTTCAACCTACTCAACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTC
TCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAG
AATCTGCAATCTTCAACCAATTCCACTATGGCTTAGGGAGATAGGACAAATGGCTTAAATCTGCT
TCACCACTG
Found at i:3205 original size:596 final size:595
Alignment explanation
Indices: 2073--3264 Score: 1762
Period size: 596 Copynumber: 2.0 Consensus size: 595
2063 TGACAGAATT
* *
2073 TGCAATCTTTAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTTTC
1 TGCAATCTTTAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTC
* * * * * * *
2138 CAGTGTATTGGGTAGATAAGATTCACCATCTTCGATCTACTCCACTACTGGTTAGGGTGATAGAA
66 CACTGTATTGGGAAAATAAGATTCACCATATTCAATCTACTCCACTACTGCTTAGGGTGACAGAA
*
2203 TCTACAATCTTCAACCGACTCCAATACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTC
131 TCTACAATCTTCAACCGACTCCAATACTGCTTAGGGAGATAGGACTAATGACTTAAATCTGCTTC
* * *
2268 TCCACTGTATTGGGAAGATATGATTCACCATCGTCGATCTGCTCCACTACTGCTTAGGGTGACAG
196 TCCACCGTATTGGGAAGATAAGATTCACCATCGTCGATCTACTCCACTACTGCTTAGGGTGACAG
* * * * *
2333 AATCTGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATTTGCT
261 AATCTGCAATCTTCAACCTACTCAACTACTACTTAGGGTGATAGGACTAATAGCTTAAATTTGCT
*
2398 TCTCCACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGAC
326 TCTCCACTGTATTGGGAAAATAAGATTCATCATATTCAATCTGCTTCACTACTGCTTAGGGTGAC
* *
2463 AGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTG
391 AGAATCTGCAATCTTCAACCAACTCCACTACTACTTAGGGAGATAGGACTAATGGCTTAAATCTG
* * * * * * *
2528 CTTCTCCACTGTATTGGGAAATTGATATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTG
456 CTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTACTCCAATACTGCTTAGGGTG
*
2593 ACAGAATCTGCAATCTTCAACCAATTCCACTA-TGGCTTAGGGAGA-TAGGACAAATGGCTTAAA
521 ACAGAATCTGCAATCTTCAACCAACTCCACTACT-GCTTAGGGAGATTA-GACAAATGGC-TAAA
*
2656 TCTGTTTCACCAC
583 TCTGCTTCACCAC
* *
2669 TGCAATCTTTAACGTACTCCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCTGCTTCTC
1 TGCAATCTTTAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTC
* * * *
2734 CACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGACAGAA
66 CACTGTATTGGGAAAATAAGATTCACCATATTCAATCTACTCCACTACTGCTTAGGGTGACAGAA
* * *
2799 TCTACAATCTTCAACCGACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTC
131 TCTACAATCTTCAACCGACTCCAATACTGCTTAGGGAGATAGGACTAATGACTTAAATCTGCTTC
* * * * *
2864 TCCACCGTATTTGGAAGGTAAGATTCAGCATCTTCGATCTACTCCACTACTGCTTAGTGTGACAG
196 TCCACCGTATTGGGAAGATAAGATTCACCATCGTCGATCTACTCCACTACTGCTTAGGGTGACAG
* * * *
2929 AATCTGTAATCTTCAACCTACTCAACTGCTACTTAGGGTGATTGGACTAATGGCTTAAATTTGCT
261 AATCTGCAATCTTCAACCTACTCAACTACTACTTAGGGTGATAGGACTAATAGCTTAAATTTGCT
* *
2994 TCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGAC
326 TCTCCACTGTATTGGGAAAATAAGATTCATCATATTCAATCTGCTTCACTACTGCTTAGGGTGAC
* * * * *
3059 AGAATCTGTAATCTTTAACCAATTCCACTA-TGGCTTAGGGAGATAGGGCTAATGGCTTAAATCT
391 AGAATCTGCAATCTTCAACCAACTCCACTACT-ACTTAGGGAGATAGGACTAATGGCTTAAATCT
*
3123 GCTTCTCCACTGTATTGGGAAAATAAGATTCA-CTATCTTCGATCTACTCCAATACTGCTTAGGG
455 GCTTCTCCACTGTATTGGGAAAATAAGATTCATC-ATATTCGATCTACTCCAATACTGCTTAGGG
* * * *
3187 TGACAGAATCTGCAATCTTCAACCTACTCCTCTACTGCTTAGGGAGATTAGACTAATGGCTCAAT
519 TGACAGAATCTGCAATCTTCAACCAACTCCACTACTGCTTAGGGAGATTAGACAAATGGCTAAAT
*
3252 CTGCTTCTCCAC
584 CTGCTTCACCAC
3264 T
1 T
3265 ATCTTGAGAA
Statistics
Matches: 531, Mismatches: 61, Indels: 9
0.88 0.10 0.01
Matches are distributed among these distances:
595 17 0.03
596 511 0.96
597 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (595 bp):
TGCAATCTTTAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTC
CACTGTATTGGGAAAATAAGATTCACCATATTCAATCTACTCCACTACTGCTTAGGGTGACAGAA
TCTACAATCTTCAACCGACTCCAATACTGCTTAGGGAGATAGGACTAATGACTTAAATCTGCTTC
TCCACCGTATTGGGAAGATAAGATTCACCATCGTCGATCTACTCCACTACTGCTTAGGGTGACAG
AATCTGCAATCTTCAACCTACTCAACTACTACTTAGGGTGATAGGACTAATAGCTTAAATTTGCT
TCTCCACTGTATTGGGAAAATAAGATTCATCATATTCAATCTGCTTCACTACTGCTTAGGGTGAC
AGAATCTGCAATCTTCAACCAACTCCACTACTACTTAGGGAGATAGGACTAATGGCTTAAATCTG
CTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTACTCCAATACTGCTTAGGGTG
ACAGAATCTGCAATCTTCAACCAACTCCACTACTGCTTAGGGAGATTAGACAAATGGCTAAATCT
GCTTCACCAC
Found at i:3300 original size:45 final size:45
Alignment explanation
Indices: 3250--3388 Score: 117
Period size: 45 Copynumber: 3.1 Consensus size: 45
3240 TAATGGCTCA
*
3250 ATCTGCTTCTCCACTATCTTGAGAAGATAAGAATCACTATCTTCG
1 ATCTGCTTCTCCACTATCTTGAGAAGATAAGAATCACAATCTTCG
* * * **
3295 ATCTG---CTCCACTACTGCTT-AG-GGTTACAGAATCTGCAATCTTAA
1 ATCTGCTTCTCCACTA-T-CTTGAGAAGATA-AGAATC-ACAATCTTCG
* * * *
3339 ATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCG
1 ATCTGCTTCTCCACTATCTTGAGAAGATAAGAATCACAATCTTCG
3384 ATCTG
1 ATCTG
Statistics
Matches: 70, Mismatches: 15, Indels: 18
0.68 0.15 0.17
Matches are distributed among these distances:
42 11 0.16
43 9 0.13
44 14 0.20
45 18 0.26
46 7 0.10
47 11 0.16
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.33
Consensus pattern (45 bp):
ATCTGCTTCTCCACTATCTTGAGAAGATAAGAATCACAATCTTCG
Done.