Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_828 ID=scaffold_828-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4846
ACGTcount: A:0.22, C:0.13, G:0.16, T:0.19
Warning! 1479 characters in sequence are not A, C, G, or T
Found at i:600 original size:132 final size:132
Alignment explanation
Indices: 1--588 Score: 811
Period size: 132 Copynumber: 4.5 Consensus size: 132
* * * *
1 CCAATACAGTAGAGAAGCAGATTTAAGCCATTAGACCTATCTCCCTAAGGAGTAGTGGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
** * ** * * *
66 TGAAGATTATAGATTATGTCACCCTAAATAGTAGTGGAGCAGATCGAATATGATAAATCTTATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
131 TC
131 TC
* * * *
133 CCAAGACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTACTTGAATAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* *
198 TGAAGACTGCACATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT-T
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
262 TCC
131 T-C
* * * * *
265 CCAATATAGTGGATAA-CTAGATTTCAGCCATTAGTCCTATCACCCTACGCAGTAGTGGAGTGGG
1 CCAATACAGTGGAGAAGC-AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGG
* *
329 TTGAGGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATA
65 TTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC
394 TTC
130 TTC
* *
397 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGTAGTAGTAGAGTAGGT
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
* * * *
462 TGAAGATTGCAGACTCTATCACCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAATCATATCT
66 TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
527 TC
131 TC
* * * * * *
529 TCAAAATAGTGGAGCAGCAGATGTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGGAG
1 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
589 CAGATCGAAG
Statistics
Matches: 401, Mismatches: 51, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
131 3 0.01
132 395 0.99
133 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (132 bp):
CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
TGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
TC
Found at i:607 original size:220 final size:220
Alignment explanation
Indices: 348--807 Score: 706
Period size: 220 Copynumber: 2.1 Consensus size: 220
338 GCAGATTCTG
*
348 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATATTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATATTCCCAATACAGTAGAGAA
* * *
413 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGTAGTAGTAGAGTAGGTTGAAGATTGCAGACTC
66 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTAGAGTAGGATGAAGATTGCAGACTC
* * * * * * *
478 TATCACCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAATCATATCTTCTCAAAATAGTGGAG
131 TATCACCCTAAACAGTAGCGGAGCAGATCAAAGATGATGAATCATATCTTCCCAAAACAGTGGAG
*
543 CAGCAG-ATGTAAGCCATTAATCCTA
196 AAGCAGAAT-TAAGCCATTAATCCTA
* *
568 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATCCAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATATTCCCAATACAGTAGAGAA
* *
633 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGATGAAGATTGCAGATTC
66 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTAGAGTAGGATGAAGATTGCAGACTC
* * * *
698 TCTCACCCTAAACAGTAGCGGAGCAGATCAAATATGATGAATCTTATCTTCCCAATACAGTGGAG
131 TATCACCCTAAACAGTAGCGGAGCAGATCAAAGATGATGAATCATATCTTCCCAAAACAGTGGAG
* *
763 AAGTAGAATTAAGCCATTAGTCCTA
196 AAGCAGAATTAAGCCATTAATCCTA
788 TCACCCTAAGCAGTAGTGGA
1 TCACCCTAAGCAGTAGTGGA
808 ATAGGTTGAA
Statistics
Matches: 217, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
220 215 0.99
221 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (220 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATATTCCCAATACAGTAGAGAA
ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTAGAGTAGGATGAAGATTGCAGACTC
TATCACCCTAAACAGTAGCGGAGCAGATCAAAGATGATGAATCATATCTTCCCAAAACAGTGGAG
AAGCAGAATTAAGCCATTAATCCTA
Found at i:638 original size:88 final size:88
Alignment explanation
Indices: 477--676 Score: 301
Period size: 88 Copynumber: 2.3 Consensus size: 88
467 ATTGCAGACT
* * * *
477 CTATCACCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAATCATATCTTCTCAAAATAGTGGA
1 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCATATCTTCCCAAAACAGTAGA
* *
542 GCAGCAGATGTAAGCCATTAATC
66 GAAACAGATGTAAGCCATTAATC
* **
565 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATCCAGTAGA
1 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCATATCTTCCCAAAACAGTAGA
* *
630 GAAACAGATTTAAGCCATTAGTC
66 GAAACAGATGTAAGCCATTAATC
653 CTATCACCCTAAGCAGTAGTGGAG
1 CTATCACCCTAAGCAGTAGTGGAG
677 TAGGATGAAG
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 101 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.24
Consensus pattern (88 bp):
CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCATATCTTCCCAAAACAGTAGA
GAAACAGATGTAAGCCATTAATC
Found at i:704 original size:132 final size:132
Alignment explanation
Indices: 568--1128 Score: 883
Period size: 132 Copynumber: 4.2 Consensus size: 132
558 ATTAATCCTA
* *
568 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATCCAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTAGAGAA
* *
633 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGATGAAGATTGCAGATTC
66 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGATTC
*
698 TC
131 TG
* * * * *
700 TCACCCTAAACAGTAGCGGAGCAGATCAAATATGATGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTAGAGAA
** *
765 GTAGAATTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGATTC
66 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGATTC
830 TG
131 TG
*
832 TCACCCTAAGCAGTACTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTAGAGAA
* * *
897 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTC
66 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGATTC
962 TG
131 TG
* *
964 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGAT-AATTCTTATTTTCCCAATACAGTGGA-A
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAA-TCTTATCTTCCCAATACAGTAGAGA
* * *
1027 AAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTCGAATAGGTTGAAGATTGCAGAT
65 AA-CAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGAT
1092 TCTG
129 TCTG
*
1096 TCACCCTAAGCAGTAGTGGAGTAGATCGAAGAT
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1129 NNNNNNNNNN
Statistics
Matches: 394, Mismatches: 33, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
131 4 0.01
132 390 0.99
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (132 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTAGAGAA
ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGATTC
TG
Found at i:741 original size:352 final size:352
Alignment explanation
Indices: 216--940 Score: 1114
Period size: 352 Copynumber: 2.1 Consensus size: 352
206 GCACATTCTG
*
216 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATTTCCCCAATATAGTGGATAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATTTCCCCAATACAGTGGATAA
* * * * *
281 CTAGATTTCAGCCATTAGTCCTATCACCCTACGCAGTAGTGGAGTGGGTTGAGGATTGCAGATTC
66 CTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGATGAAGATTGCAGATTC
* * * * *
346 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATATTCCCAATACAGTGGAG
131 TCTCACCCTAAACAGTAGCGGAGCAGATCAAAGATGATGAATCTTATATTCCCAATACAGTGGAG
* * *
411 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGTAGTAGTAGAGTAGGTTGAAGATTGCAGAC
196 AAGCAGAATTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTAGAATAGGTTGAAGATTGCAGAC
* * * * * *
476 TCTATCACCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAATCATATCTTCTCAAAATAGTGG
261 TCTATCACCCTAAGCAGTACTGGAGCAGATCGAAGATGATGAATCATATCTTCCCAAAACAGTAG
*
541 AGCAGCAGATGTAAGCCATTAATCCTA
326 AGAAGCAGATGTAAGCCATTAATCCTA
*
568 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTT-CCCAATCCAGTAGAGA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT-TTCCCCAATACAGT-G-GA
632 -AAC-AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGATGAAGATTGCAGA
63 TAACTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGATGAAGATTGCAGA
* *
695 TTCTCTCACCCTAAACAGTAGCGGAGCAGATCAAATATGATGAATCTTATCTTCCCAATACAGTG
128 TTCTCTCACCCTAAACAGTAGCGGAGCAGATCAAAGATGATGAATCTTATATTCCCAATACAGTG
* *
760 GAGAAGTAGAATTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCA
193 GAGAAGCAGAATTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTAGAATAGGTTGAAGATTGCA
* * * *
825 GATTCTGTCACCCTAAGCAGTACTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAG
258 GACTCTATCACCCTAAGCAGTACTGGAGCAGATCGAAGATGATGAATCATATCTTCCCAAAACAG
* *
890 TAGAGAAGCAGATTTAAGCCATTAGTCCTA
323 TAGAGAAGCAGATGTAAGCCATTAATCCTA
920 TCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
941 TAGGTTGAAG
Statistics
Matches: 338, Mismatches: 32, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
352 330 0.98
353 6 0.02
354 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (352 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATTTCCCCAATACAGTGGATAA
CTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGATGAAGATTGCAGATTC
TCTCACCCTAAACAGTAGCGGAGCAGATCAAAGATGATGAATCTTATATTCCCAATACAGTGGAG
AAGCAGAATTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTAGAATAGGTTGAAGATTGCAGAC
TCTATCACCCTAAGCAGTACTGGAGCAGATCGAAGATGATGAATCATATCTTCCCAAAACAGTAG
AGAAGCAGATGTAAGCCATTAATCCTA
Found at i:993 original size:484 final size:484
Alignment explanation
Indices: 84--1068 Score: 1470
Period size: 484 Copynumber: 2.0 Consensus size: 484
74 ATAGATTATG
** * *
84 TCACCCTAAATAGTAGTGGAGCAGATCGAATATGATAAATCTTATCTTCCCAAGACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATAAATCTTATCTTCCCAAGACAGTAGAGAA
* * *
149 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTACTTGAATAGGTTGAAGACTGCACATTC
66 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTACTGGAATAGGATGAAGACTGCACATTC
* * * * * * *
214 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATTTCCCCAATATAGTGGAT
131 TCTCACCCTAAACAGTAGCGGAGCAGATCAAAGATGATGAATCTTATTTCCCCAATACAGTGGAG
* * * * * *
279 AACTAGATTTCAGCCATTAGTCCTATCACCCTACGCAGTAGTGGAGTGGGTTGAGGATTGCAGAT
196 AACTAGAATTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGAT
* * *
344 TCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATATTCCCAATACAGTGG
261 TCTGTCACCCTAAGCAGTACTGGAGCAGATCGAAGATGATGAATCTTATATTCCCAATACAGTAG
*
409 AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGTAGTAGTAGAGTAGGTTGAAGATTGCAG
326 AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTAGAGTAGGTTGAAGATTGCAG
* * * *
474 ACTCTATCACCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAA-TCATATCTTCTCAAAATAG
391 ACTCTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGAT-AATTCATATCTTCCCAAAACAG
** *
538 TGGAGCAGCAGATGTAAGCCATTAATCCTA
455 TGGAAAAGAAGATGTAAGCCATTAATCCTA
* * **
568 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATCCAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATAAATCTTATCTTCCCAAGACAGTAGAGAA
* * * *
633 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGATGAAGATTGCAGATTC
66 ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTACTGGAATAGGATGAAGACTGCACATTC
*
698 TCTCACCCTAAACAGTAGCGGAGCAGATCAAATATGATGAATCTTATCTT-CCCAATACAGTGGA
131 TCTCACCCTAAACAGTAGCGGAGCAGATCAAAGATGATGAATCTTAT-TTCCCCAATACAGTGGA
*
762 GAAGTAGAATTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGA
195 GAACTAGAATTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGA
*
827 TTCTGTCACCCTAAGCAGTACTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTA
260 TTCTGTCACCCTAAGCAGTACTGGAGCAGATCGAAGATGATGAATCTTATATTCCCAATACAGTA
* *
892 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTA
325 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTAGAGTAGGTTGAAGATTGCA
* * * * *
957 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATAATTCTTATTTTCCCAATACAG
390 GACTCTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATAATTCATATCTTCCCAAAACAG
* *
1022 TGGAAAAGAAGATTTAAGCCATTAGTCCTA
455 TGGAAAAGAAGATGTAAGCCATTAATCCTA
*
1052 TCTCCCTAAGCAGTAGT
1 TCACCCTAAGCAGTAGT
1069 CGAATAGGTT
Statistics
Matches: 447, Mismatches: 52, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
483 2 0.00
484 443 0.99
485 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (484 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATAAATCTTATCTTCCCAAGACAGTAGAGAA
ACAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTACTGGAATAGGATGAAGACTGCACATTC
TCTCACCCTAAACAGTAGCGGAGCAGATCAAAGATGATGAATCTTATTTCCCCAATACAGTGGAG
AACTAGAATTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGAT
TCTGTCACCCTAAGCAGTACTGGAGCAGATCGAAGATGATGAATCTTATATTCCCAATACAGTAG
AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTAGAGTAGGTTGAAGATTGCAG
ACTCTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATAATTCATATCTTCCCAAAACAGT
GGAAAAGAAGATGTAAGCCATTAATCCTA
Found at i:995 original size:44 final size:44
Alignment explanation
Indices: 301--996 Score: 207
Period size: 44 Copynumber: 15.8 Consensus size: 44
291 GCCATTAGTC
* ** * * *
301 CTATCACCCTACGCAGTAGTGGAGTGGGTTGAGGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATT
* * * *
345 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGT-GAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATT
* * * * * *
388 CTTAT-ATTCCC-AATACAGTGGAGAAGCAGATTTAAGCCA-T-TAG-TC
1 C-TATCA--CCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATT
* * * * * *
433 CTATCACCCTAAGTAGTAGTAGAGTAGGTTGAAGATTGCAGACT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATT
* * * *
477 CTATCACCCTAAGCAGTAGTGGAGCGGATCGAAGATGGT-GAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATT
** * * *
520 CATATC-TTCTCAA--AATAGTGGAGCAGCAGATGTAAGCCA-T-TA-ATC
1 C-TATCACCCT-AAGCAGTAGTGGAGCAG-A-TTG-AAG--ATTGTAGATT
* * *
565 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGT-GAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATT
* * * * * * *
608 CTTATCTTCCC-AATCCAGTAGAGAAACAGATTTAAGCCA-T-TAG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATT
* *
653 CTATCACCCTAAGCAGTAGTGGAGTAGGA-TGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCA-GATTGAAGATTGTAGATT
* * * * *
697 CTCTCACCCTAAACAGTAGCGGAGCAGA-TCAA-ATATG-ATGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT-TGTA-GATT
* * * * * * *
740 CTTATCTTCCC-AATACAGTGGAGAAGTAGAATT-AAGCCA-T-TAG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAG-ATTGAAG--ATTGTAGATT
** * *
785 CTATCACCCTAAGCAGTAGTGGAATAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATT
* * * *
829 CTGTCACCCTAAGCAGTACTGGAGCAGATCGAAGA-TG-ATGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTA-GATT
* * * * * *
872 CTTATCTTCCC-AATACAGTAGAGAAGCAGATTTAAGCCA-T-TAG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATT
* *
917 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATT
* *
961 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT
997 GATAATTCTT
Statistics
Matches: 459, Mismatches: 129, Indels: 128
0.64 0.18 0.18
Matches are distributed among these distances:
41 5 0.01
42 21 0.05
43 111 0.24
44 206 0.45
45 87 0.19
46 19 0.04
47 9 0.02
49 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (44 bp):
CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATT
Found at i:2852 original size:132 final size:132
Alignment explanation
Indices: 2615--4842 Score: 3136
Period size: 132 Copynumber: 16.9 Consensus size: 132
2605 NNNTAGAGTT
* *
2615 GAGAAGCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * * *
2680 GATTCTGTCACCCTCAGCAGTAGTGCAGCGGATCGAAGATGGTGAAGCTTATCTACCCAATACAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
2745 TG
131 TG
* * * * *
2747 GAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGTAGTAGTGGATTCGGTTGAAGATTGTA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* *
2812 GATTCTGTCACCCTAACCAGTAGTGATAG-AGATCGAAGATGGTGAAT-TGTATCTTCCCAATAC
66 GATTCTGTCACCCTAAGCAGTAGTG-GAGCAGATCGAAGATGGTGAATCT-TATCTTCCCAATAC
2875 AGTG
129 AGTG
* * * * *
2879 GAGAAGCAGATTTAAGTCATTAGTCGTATCGCCCTAAGCAGTAGTGGAGTAGGTTGACGATTACA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* *
2944 GATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTCTCTTCCCAATACAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
3009 TG
131 TG
*
3011 GAGAAGCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * * * * **
3076 GATTCTGTCACGCTAAGCAGTTGTGCAGCAGATCGAAGATGGTGAATCATATCTTCTCAAGATTG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
3141 TG
131 TG
* * * * * * * *
3143 GAGAAGCAGATGTAAGTCATTAGTTCAATCTCTCTAAGCAGTAGTGGAGTAGGTTAAAGTTTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * *
3208 GATTCTGTCACCCTAAGCAATAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATATAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
*
3273 TA
131 TG
* * * * *
3275 GAGAAGTAGCTTTAAGCCATTAGACCTATC-TCCTAAAGCAGTAGTGGAGTAGGTTGAAGATTAC
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT-AAGCAGTAGTGGAGTAGGTTGAAGATTGC
* * * * * *
3339 AGAATCTGTCACCCTAAACAGTAGTGGAGGAGATCAAATATGATGAATCTTATCTTCCCAATACA
65 AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
3404 GTG
130 GTG
* *
3407 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGGAGTAGTGGAGAAGGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * *
3472 GTTTCTGTCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATATAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
3537 TG
131 TG
* ** *
3539 GATAAGTTGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* *
3604 GATTCTGTCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGCGAATCTTATCTTCCCAATACA
66 GATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
3668 GTG
130 GTG
* *
3671 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAATAGTGGAGTACGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
*
3736 GATTTTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
*
3801 TA
131 TG
* * *
3803 GAGAAGAAGATTTAAGCCATTAGTCCTATCACCCTAAGGAGTAGTGGAGTAGGTTGAAGAGTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
*
3868 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
3933 TG
131 TG
3935 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * *
4000 GATTCTGTCACCTTTAGGAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
4065 TG
131 TG
* * * *
4067 GAGAAGCAGATTTCAGCCATTAGTCTTATCATCCTAAGCA-TAGTGGAGTCGGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* *
4131 GATTCTGTCACCCTAACCAGTAGT-GATGCAGATCAAAGATGGTGAATCTTATCTTCCCAATACA
66 GATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
4195 GTG
130 GTG
** * * *
4198 GAGAAGCAGATTTAAGCCATTAAACCTATCACCCTAAGCAGTAGTGGAGTACGTTGAGGGATTGA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGA-AGATTGC
* * * * * * * *
4263 AGCTTCTATCAACCTAAGTAATACTGGAGGAGATCGAAGATGGTGAATCTTATCTTTCCAATACA
65 AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
4328 GTG
130 GTG
**
4331 GAGAATTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * *
4396 GATTCTGTCACCTTAAGCAGTAGTGGAGTAGATCGAAGATCGTGAATCTTATCTTCCCAATACAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
4461 TG
131 TG
* *
4463 GAGAAGCAGATTTAAGTCGTTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* ** * * * * * ** * **
4528 TATTAAGTCACTCTAAGCAGTAGTGCAGCGGATCAAAGATGGTGAATCATATCTTTTCAAGATTG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
4593 TG
131 TG
* * * * *
4595 GAGAAGCAGATGTAAGCCATTAGTCCAATCTCCCTATGCAGTAGTGGAGTAGCTTGAAGATTGCA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * *
4660 GATTCTATCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCATCCCAATACAG
66 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
*
4725 TA
131 TG
* * * * * **
4727 GAGAAGCAAATTTAAGCCATTAGACCTATCTCCCTAAGCTGTAGTGTAGTAGGTTGAAGATAACA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * *
4792 GATTTTGTCACCTTAATGCAGTAGTGGAGCAGATCGAATATGATGAATCTT
66 GATTCTGTCACCCTAA-GCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
4843 TATC
Statistics
Matches: 1849, Mismatches: 234, Indels: 25
0.88 0.11 0.01
Matches are distributed among these distances:
130 2 0.00
131 123 0.07
132 1571 0.85
133 151 0.08
134 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG
TG
Found at i:3774 original size:44 final size:43
Alignment explanation
Indices: 2638--4525 Score: 253
Period size: 44 Copynumber: 42.9 Consensus size: 43
2628 AAGTCATTAG
* *
2638 TCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGA
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGA
* * * * * *
2682 TTCTGTCACCCTCAGCAGTAGTGCAGCGGATCGAAGATGGTGA-A
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGAGA
* * * * * * *
2726 GCTTATCTACCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGA
* * * *
2770 TCCTATCATCCTAAGTAGTAGTGGATTC-GGTTGAAGATTGTAGA
1 TCCTATCACCCTAAGCAGTAGTGGA-GCAGATTGAAGATTG-AGA
* * * * *
2814 TTCTGTCACCCTAACCAGTAGTGATAG-AGATCGAAGATGGTGA-A
1 TCCTATCACCCTAAGCAGTAGTG-GAGCAGATTGAAGAT--TGAGA
** * * * * * *
2858 TTGTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGTCATT-AG-
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGA
* * * * * *
2902 TCGTATCGCCCTAAGCAGTAGTGGAGTAGGTTGACGATTACAGA
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATT-GAGA
* * * *
2946 TTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGA-A
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGAGA
* * * * * * * *
2990 TCTTCTCTTCCC-AATACAGTGGAGAAGCAGATTTAAGTCATT-AG-
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGA
* *
3034 TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGA
* * * * * *
3078 TTCTGTCACGCTAAGCAGTTGTGCAGCAGATCGAAGATGGTGA-A
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGAGA
* ** *
3122 TCATATC-TTCTCAAG-A-TTGTGGAGAAGCAGA-TGTAAGTCATT-AG-
1 TCCTATCACCCT-AAGCAGTAGT-G-G-AGCAGATTG-AAG--ATTGAGA
* * * * * * * *
3166 TTCAATCTCTCTAAGCAGTAGTGGAGTAGGTTAAAGTTTGCAGA
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGA
* * * * *
3210 TTCTGTCACCCTAAGCAATAGTGGAGTAGATCGAAGATGGTGA-A
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGAGA
* * ** * * * * *
3254 TCTTATCTTCCC-AATATAGTAGAGAAGTAGCTTTAAGCCATT-AGA
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGA
* * * *
3299 -CCTATC-TCCTAAAGCAGTAGTGGAGTAGGTTGAAGATTACAGAA
1 TCCTATCACCCT-AAGCAGTAGTGGAGCAGATTGAAGATT-GAG-A
* * * *
3343 T-CTGTCACCCTAAACAGTAGTGGAGGAGA-TCAA-ATATGATGAA
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT-TGA-G-A
* * * * * * *
3386 TCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGA
* * * *
3430 TCCTATCACCCTAAGGAGTAGTGGAGAAGGTTGAAGATTGCAGT
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGA
* * * *
3474 TTCTGTCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGA-A
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGAGA
* * * ** *
3518 TCTTATCTTCCC-AA-TA-TAGTGGATAAGTTGATTTAAGCCATT-AG-
1 TCCTATC-ACCCTAAGCAGTAGTGG---AGCAGATTGAAG--ATTGAGA
*
3562 TCCTATCACCCTAAGCAGTAGTGGAGTC-GGTTGAAGATTGCAGA
1 TCCTATCACCCTAAGCAGTAGTGGAG-CAGATTGAAGATTG-AGA
* * * * * *
3606 TTCTGTCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGCGAA
1 TCCTATCACCCTAAGCAGTAGTGGA-GCAGATTGAAGATTGAG-A
* * * * * * *
3650 TCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGA
* *
3694 TCCTATCACCCTAAGCAATAGTGGAGTACG-TTGAAGATTGCAGA
1 TCCTATCACCCTAAGCAGTAGTGGAGCA-GATTGAAGATTG-AGA
** * *
3738 TTTTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA-A
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGAGA
* * * * * * *
3782 TCTTATCTTCCC-AATACAGTAGAGAAGAAGATTTAAGCCATT-AG-
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGA
* * * *
3826 TCCTATCACCCTAAGGAGTAGTGGAGTAGGTTGAAGAGTGCAGA
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGA
* * * *
3870 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAA
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGAG-A
* * * * * * *
3914 TCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGA
* *
3958 TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGA
* * * * * * *
4002 TTCTGTCACCTTTAGGAGTAGTGGAGCAGATCGAAGATTGTGAA
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGAG-A
* * * * * * **
4046 TCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTCAGCCATT-AG-
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGA
* * *
4090 TCTTATCATCCTAAGCA-TAGTGGAGTC-GGTTGAAGATTGCAGA
1 TCCTATCACCCTAAGCAGTAGTGGAG-CAGATTGAAGATTG-AGA
* * * **
4133 TTCTGTCACCCTAACCAGTAGT-GATGCAGATCAAAGATGGTGA-A
1 TCCTATCACCCTAAGCAGTAGTGGA-GCAGATTGAAGAT--TGAGA
* * * * * * *
4177 TCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-A-A
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGA
* * * *
4221 ACCTATCACCCTAAGCAGTAGTGGAGTACG-TTGAGGGATTGAAGC
1 TCCTATCACCCTAAGCAGTAGTGGAGCA-GATTGA-AGATTG-AGA
* * * * * * *
4266 TTCTATCAACCTAAGTAATACTGGAGGAGATCGAAGATGGTGA-A
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGAGA
* ** * * * * ** *
4310 TCTTATCTTTCC-AATACAGTGGAGAATTAGATTTAAGCCATT-AG-
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGA
* *
4354 TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGA
* * * * *
4398 TTCTGTCACCTTAAGCAGTAGTGGAGTAGATCGAAGATCGTGA-A
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGAGA
* * * * * * * *
4442 TCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAG-TCGTTAG-
1 TCCTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAGAT--TGAGA
* *
4486 TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
1 TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG
4526 CATATTAAGT
Statistics
Matches: 1275, Mismatches: 393, Indels: 354
0.63 0.19 0.18
Matches are distributed among these distances:
40 3 0.00
41 31 0.02
42 31 0.02
43 266 0.21
44 598 0.47
45 279 0.22
46 37 0.03
47 27 0.02
48 1 0.00
49 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
TCCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGAGA
Done.