Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_832 ID=scaffold_832-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3342
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28


Found at i:667 original size:1 final size:1

Alignment explanation


    Indices: 621--651  Score: 62
    Period size: 1  Copynumber: 31.0  Consensus size: 1

        611 TAAGAAAGTT

                                           
        621 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

        652 TTATTACGCT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   30  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:2301 original size:17 final size:17

Alignment explanation


    Indices: 2279--2319  Score: 82
    Period size: 17  Copynumber: 2.4  Consensus size: 17

       2269 CCGGCGGCCG

                             
       2279 AGGGCCCCCTAGGCGCC
          1 AGGGCCCCCTAGGCGCC

                             
       2296 AGGGCCCCCTAGGCGCC
          1 AGGGCCCCCTAGGCGCC

                   
       2313 AGGGCCC
          1 AGGGCCC

       2320 GCCCCCCTGC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   24  1.00

ACGTcount: A:0.12, C:0.46, G:0.37, T:0.05


Consensus pattern (17 bp):   
AGGGCCCCCTAGGCGCC
Done.