Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 106 of 190
Found at i:32162738 original size:45 final size:45
Alignment explanation
Indices: 32162651--32162762 Score: 113
Period size: 45 Copynumber: 2.5 Consensus size: 45
32162641 ATCTACTCTG
* * *
32162651 CTGCAACTTCAGAGAGATAAGATCTATTGTTTTAATCCGCTCCAA
1 CTGCAACTTCAGAGAGATAAGATCTATGGCTTAAATCCGCTCCAA
* * *
32162696 CTGCAACTTCAGGGAGATAGGAT-TATCGGCTTAAATCTGCTCC-A
1 CTGCAACTTCAGAGAGATAAGATCTAT-GGCTTAAATCCGCTCCAA
* *
32162740 CTGTAACCTCA-AGAAGATAAGAT
1 CTGCAACTTCAGAG-AGATAAGAT
32162763 TTTCCATCTT
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
43 1 0.02
44 21 0.38
45 33 0.60
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (45 bp):
CTGCAACTTCAGAGAGATAAGATCTATGGCTTAAATCCGCTCCAA
Found at i:32162844 original size:44 final size:43
Alignment explanation
Indices: 32162689--32162849 Score: 119
Period size: 44 Copynumber: 3.7 Consensus size: 43
32162679 GTTTTAATCC
* * * * * **
32162689 GCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTAAATCT
1 GCTCC-ACTGCAACCTCAAGGAGATAAGATTTTC-TCTTCGATCT
* *
32162734 GCTCCACTGTAACCTCAAGAAGATAAGATTTTCCATCTTCGATCT
1 GCTCCACTGCAACCTCAAGGAGATAAGATTTT-C-TCTTCGATCT
* * * * * *
32162779 GCTCTACTACTA-CTTAGGGAGATAAGATCTGTT-TCTTCGGTCT
1 GCTCCACTGCAACCTCAAGGAGATAAGAT-T-TTCTCTTCGATCT
32162822 GCTCCACTGCAACCTCAAGGAGATAAGA
1 GCTCCACTGCAACCTCAAGGAGATAAGA
32162850 CCTGATGTGA
Statistics
Matches: 89, Mismatches: 23, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
43 18 0.20
44 47 0.53
45 22 0.25
46 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (43 bp):
GCTCCACTGCAACCTCAAGGAGATAAGATTTTCTCTTCGATCT
Found at i:32163014 original size:130 final size:129
Alignment explanation
Indices: 32162819--32163089 Score: 357
Period size: 130 Copynumber: 2.1 Consensus size: 129
32162809 GTTTCTTCGG
* * * * *
32162819 TCTGCTCCACTGCAACCTCAAGGAGATAAGACCTGATGTGATCTACTCTGCTGTAACTTCAGAGA
1 TCTGCTCCACTGCAAACTCAACGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGA
**
32162884 GATAAGATCTATTATTTGAATCCGCTCCACTCCCGCTTCAGGGAGATAGGATTATCGGCTTCAA
66 GATAAGATCTATTATTTGAATCCGCTCCACTCCAACTTCAGGGAGATAGGATTATCGGCTTCAA
* * *
32162948 TCTGTTCCACTGCAAAACTCAACGAGATAAGATCTGATGCGATCTACTCTACTGCAACCTT-GGA
1 TCTGCTCCACTGC-AAACTCAACGAGATAAGACCTGATGCGATCTACTCTACTGCAA-CTTCAGA
* * * *
32163012 GAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGTGAGATAGGATTAGT-GGCTTT
64 GAGATAAGATCTATTATTTGAATCCGCTCCACTCCAACTTCAGGGAGATAGGATTA-TCGGCTTC
32163076 AA
128 AA
* *
32163078 TGTACTCCACTG
1 TCTGCTCCACTG
32163090 TATCGTCAGA
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
129 12 0.10
130 106 0.87
131 4 0.03
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (129 bp):
TCTGCTCCACTGCAAACTCAACGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGA
GATAAGATCTATTATTTGAATCCGCTCCACTCCAACTTCAGGGAGATAGGATTATCGGCTTCAA
Found at i:32163101 original size:218 final size:217
Alignment explanation
Indices: 32162641--32163526 Score: 688
Period size: 218 Copynumber: 4.1 Consensus size: 217
32162631 ACCTGATGTG
** * * * * * **
32162641 ATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTGT-TTTAATCCGCTCCAACTGCAACTT
1 ATCTACTCCACTGTAACCTCAGAGAGATAAGATCTATTATCTTGAATCCGCTCC-ACTACTGCTT
* * * * *
32162705 CAGGGAGATAGGAT-TATCGGCTTAAATCTGCTCCACTGTAACCTCAAGAAGATAAGATTTTCCA
65 -AGGGAGATAAGATCTATCGGCTTCAATCTGCTCCACTGAAAACTCAAGGAGATAAGA----CC-
* * * * * * * *** *
32162769 T-CTTCGATCTGCTCTACTACTACTT-AGGGAGATAAGATCTGTT-TCTTCGGTCTGCTCCACTG
124 TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTAT-TTTAATCCGCTCCACTG
* * * ** * * *
32162831 CAACCTCAAGGAGATAAGA-CCT-GATGTG
188 CAACTTCAGGGAGATAGGATTATGGCTTTA
** * * *
32162859 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTATTAT-TTGAATCCGCTCCACTCCCGCTTC
1 ATCTACTCCACTGTAACCTCAGAGAGATAAGATCTATTATCTTGAATCCGCTCCACTACTGCTT-
* * * *
32162923 AGGGAGATAGGAT-TATCGGCTTCAATCTGTTCCACTGCAAAACTCAACGAGATAAGATCTGATG
65 AGGGAGATAAGATCTATCGGCTTCAATCTGCTCCACTG-AAAACTCAAGGAGATAAGACCTGATG
*
32162987 CGATCTACTCTACTGCAACCTT-GGAGAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACT
129 CGATCTACTCTACTGCAA-CTTCAGAGAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACT
*
32163051 TCAGTGAGATAGGATTAGTGGCTTTA
193 TCAGGGAGATAGGATTA-TGGCTTTA
* * * * * *** *
32163077 ATGTACTCCACTGTATCGTCAGAGAGGTAAAATCTGCCATCTTCG-ATCTGCTCCACTACTGCTT
1 ATCTACTCCACTGTAACCTCAGAGAGATAAGATCTATTATCTT-GAATCCGCTCCACTACTGCTT
**** ** * *
32163141 AGGGAGATAAGATCTGAGATTCTTCGGTCTGCTCCACT-ACAACTTCAGGGAGATAAGACCTGAT
65 AGGGAGATAAGATCT-ATCGGCTTCAATCTGCTCCACTGAAAAC-TCAAGGAGATAAGACCTGAT
* * *
32163205 GTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTGTTTTAATCCGCTCCAACTGCAAC
128 GCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTTAATCCGCTCC-ACTGCAAC
*
32163270 TTCAGGGAGATAGGATTATCGGCTTCA
192 TTCAGGGAGATAGGATTAT-GGCTTTA
* * * * *
32163297 ATCTGCTCCATTGTAACCTCA-AGAAGATAAGAT-T-TTCCATCTTCAATCTGCTCTACTACTGC
1 ATCTACTCCACTGTAACCTCAGAG-AGATAAGATCTATT--ATCTTGAATCCGCTCCACTACTGC
* ** ** * * *
32163359 TTAGGGAGATAAGATCTGT-TTCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGAT
63 TTAGGGAGATAAGATCTATCGGCTTCAATCTGCTCCACTGAAAACTCAAGGAGATAAGACCTGAT
* * * * **
32163423 GTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTCCCGCT
128 GCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACT
*
32163488 TCAGGGAGATAGGATTATCGGCTTCA
193 TCAGGGAGATAGGATTAT-GGCTTTA
**
32163514 ATCTGTTCCACTG
1 ATCTACTCCACTG
32163527 CAAAATTCAA
Statistics
Matches: 560, Mismatches: 88, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
213 1 0.00
214 17 0.03
215 46 0.08
216 1 0.00
217 87 0.16
218 210 0.38
219 90 0.16
220 108 0.19
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (217 bp):
ATCTACTCCACTGTAACCTCAGAGAGATAAGATCTATTATCTTGAATCCGCTCCACTACTGCTTA
GGGAGATAAGATCTATCGGCTTCAATCTGCTCCACTGAAAACTCAAGGAGATAAGACCTGATGCG
ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCA
GGGAGATAGGATTATGGCTTTA
Found at i:32163165 original size:45 final size:46
Alignment explanation
Indices: 32163116--32163203 Score: 133
Period size: 45 Copynumber: 1.9 Consensus size: 46
32163106 AAATCTGCCA
** *
32163116 TCTTCGATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGAGAT
1 TCTTCGATCTGCTCCACTACAACTTCAGGGAGATAAGACCTGAGAT
*
32163161 TCTTCGGTCTGCTCCACTACAACTTCAGGGAGATAAGACCTGA
1 TCTTCGATCTGCTCCACTACAACTTCAGGGAGATAAGACCTGA
32163204 TGTGATCTAC
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
45 22 0.58
46 16 0.42
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (46 bp):
TCTTCGATCTGCTCCACTACAACTTCAGGGAGATAAGACCTGAGAT
Found at i:32163305 original size:45 final size:45
Alignment explanation
Indices: 32163218--32163306 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 45
32163208 ATCTACTCTG
* * *
32163218 CTGCAACTTCAGAGAGATAAGATCTATTGTTTTAATCCGCTCCAA
1 CTGCAACTTCAGAGAGATAAGATCTATGGCTTCAATCCGCTCCAA
* * *
32163263 CTGCAACTTCAGGGAGATAGGAT-TATCGGCTTCAATCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTAT-GGCTTCAATCCGCTCCA
32163307 TTGTAACCTC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
44 3 0.08
45 34 0.92
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (45 bp):
CTGCAACTTCAGAGAGATAAGATCTATGGCTTCAATCCGCTCCAA
Found at i:32163450 original size:349 final size:346
Alignment explanation
Indices: 32162754--32163828 Score: 1107
Period size: 349 Copynumber: 3.1 Consensus size: 346
32162744 AACCTCAAGA
* * * * *
32162754 AGATAAGATTTTCCATCTTCGATCTGCTCTACTACTACTTAGGGAGATAAGATCT-GTTTCTTCG
1 AGATAAGATCTGCCAT-TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAGATTCTTCG
* *
32162818 GTCTGCTCCACTGCAACCTCAAGGAGATAAGACCTGATGTGATCTACTCTGCTGTAACTTCAGAG
65 GTCTGCTCCACTGCAACTTCAAGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAG
* * **
32162883 AGATAAGATCTATTATTTGAATCCGCTCCACTCCCGCTTCAGGGAGATAGGATTATCGGCTTCAA
130 AGATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAA
* * * * * * * * **
32162948 TCTGTTCCACTGCAAAACTCAACG-AGATAAGA-TCT-GA--TGCGATCTACTCTACTGCAACCT
195 TCTGCTCCACTG-TAACCTCAA-GAAGATAAGATTTTCCATCTTCGATCTGCTCTACTAC-TGCT
* *** * * * **
32163008 T-GGAGAGATAAGATCTATTAT-TTTAATCCGCTCCACTGCAACTTCAGTGAGATAGGATTAGTG
257 TAGG-GAGATAAGATCTGTT-TCTTCGGTCTGCTCCACTGCAACTTCAGGGAGATAAGA--CCT-
* * * * * * * *
32163071 GCTTTAATGTACTCCACTGTATCGTCAGAG
317 GATGTGATCTACTCTACTGCAACTTCAGAG
* *
32163101 AGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAGATTCTTC
1 AGATAAGATCTGCCAT-TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-AGATTCTTC
* *
32163166 GGTCTGCTCCACTACAACTTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGA
64 GGTCTGCTCCACTGCAACTTCAAGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGA
*
32163231 GAGATAAGATCTATTGTTTTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTC
129 GAGATAAGATCTATTATTTTAATCCGCTCC-ACTGCAACTTCAGGGAGATAGGATTATCGGCTTC
* *
32163296 AATCTGCTCCATTGTAACCTCAAGAAGATAAGATTTTCCATCTTCAATCTGCTCTACTACTGCTT
193 AATCTGCTCCACTGTAACCTCAAGAAGATAAGATTTTCCATCTTCGATCTGCTCTACTACTGCTT
*
32163361 AGGGAGATAAGATCTGTTTCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTG
258 AGGGAGATAAGATCTGTTTCTTCGGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCTGATGTG
*
32163426 ATCTACTCTGCTGCAACTTCAGAG
323 ATCTACTCTACTGCAACTTCAGAG
*** * * * * ****
32163450 AGATAAGATCTATTATTT-GAATCCGCTCCACTCCCGCTTCAGGGAGATAGGAT-TATCGGCTTC
1 AGATAAGATCTGCCATTTCG-ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTAGATTCTTC
** * * * * *
32163513 AATCTGTTCCACTGCAAAATTCAACGG-GATAAGATCTGATGCGATCTACTCTACTGCAACCTT-
64 GGTCTGCTCCACTGC-AACTTCAA-GGAGATAAGACCTGATGTGATCTACTCTGCTGCAA-CTTC
* *
32163576 GGAGAGATAAGATCTGTTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGT-GGC
126 AGAGAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTA-TCGGC
* * * * * * * *
32163640 TTCAATGTACTCCACTGTATCCTC-AGAGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACT
190 TTCAATCTGCTCCACTGTAACCTCAAGA-AGATAAGATTTTCCATCTTCGATCTGCTCTACTACT
* * *
32163704 GCTTAGGGAGATAAGATCTGAGATTCTTCGGTCTGCTCCACTACAACTTCAGGGAGATAAAACCT
254 GCTTAGGGAGATAAGATCT--GTTTCTTCGGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCT
* * * *
32163769 GATGCGATCAACTCTACTACAACTTCAAAG
317 GATGTGATCTACTCTACTGCAACTTCAGAG
* *
32163799 AGATAAGATCTGCTATTTCAATCTGCTCCA
1 AGATAAGATCTGCCATTTCGATCTGCTCCA
32163829 TTACAACTTC
Statistics
Matches: 613, Mismatches: 95, Indels: 38
0.82 0.13 0.05
Matches are distributed among these distances:
346 3 0.00
347 164 0.27
348 86 0.14
349 250 0.41
350 46 0.08
351 2 0.00
352 46 0.08
353 16 0.03
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (346 bp):
AGATAAGATCTGCCATTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAGATTCTTCGG
TCTGCTCCACTGCAACTTCAAGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
GATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAAT
CTGCTCCACTGTAACCTCAAGAAGATAAGATTTTCCATCTTCGATCTGCTCTACTACTGCTTAGG
GAGATAAGATCTGTTTCTTCGGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCTGATGTGATC
TACTCTACTGCAACTTCAGAG
Found at i:32163547 original size:218 final size:218
Alignment explanation
Indices: 32162948--32163526 Score: 806
Period size: 220 Copynumber: 2.6 Consensus size: 218
32162938 TCGGCTTCAA
* * ** * * * *
32162948 TCTGTTCCACTGCAAAACTCAACGAGATAAGATCTGATGCGATCTACTCTACTGCAACCTT-GGA
1 TCTGCTCCACTGC-AACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAA-CTTCAGA
* *
32163012 GAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGTGAGATAGGATTAGT-GGCTTT
64 GAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTA-TCGGCTTC
* * * * * *
32163076 AATGTACTCCACTGTATCGTCAGAGAGG-TAAAATCTGCCATCTTCGATCTGCTCCACTACTGCT
128 AATCTGCTCCACTGTAACCTCA-AGAGGATAAGATCTGCCATCTTCAATCTGCTCCACTACTGCT
32163140 TAGGGAGATAAGATCTGAGATTCTTCGG
192 TAGGGAGATAAGATCT-AGATTCTTCGG
* *
32163168 TCTGCTCCACTACAACTTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
*
32163233 GATAAGATCTATTGTTTTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAA
66 GATAAGATCTATTATTTTAATCCGCTCC-ACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAA
* * * * *
32163298 TCTGCTCCATTGTAACCTCAAGAAGATAAGATTTTCCATCTTCAATCTGCTCTACTACTGCTTAG
130 TCTGCTCCACTGTAACCTCAAGAGGATAAGATCTGCCATCTTCAATCTGCTCCACTACTGCTTAG
*
32163363 GGAGATAAGATCT-GTTTCTTCGG
195 GGAGATAAGATCTAGATTCTTCGG
32163386 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
* * **
32163451 GATAAGATCTATTATTTGAATCCGCTCCACTCCCGCTTCAGGGAGATAGGATTATCGGCTTCAAT
66 GATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAAT
*
32163516 CTGTTCCACTG
131 CTGCTCCACTG
32163527 CAAAATTCAA
Statistics
Matches: 321, Mismatches: 34, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
217 43 0.13
218 101 0.31
219 72 0.22
220 105 0.33
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (218 bp):
TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGA
GATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAAT
CTGCTCCACTGTAACCTCAAGAGGATAAGATCTGCCATCTTCAATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTAGATTCTTCGG
Found at i:32163570 original size:130 final size:130
Alignment explanation
Indices: 32163410--32163645 Score: 359
Period size: 130 Copynumber: 1.8 Consensus size: 130
32163400 ACCTCAGGGA
* *
32163410 GATAAGACCTGATGTGATCTACTCTGCTGCAA-CTTCAGAGAGATAAGATCTATTATTTGAATCC
1 GATAAGACCTGATGCGATCTACTCTACTGCAACCTT-AGAGAGATAAGATCTATTATTTGAATCC
**
32163474 GCTCCACTCCCGCTTCAGGGAGATAGGATTA-TCGGCTTCAATCTGTTCCACTGCAAAATTCAAC
65 GCTCCACTCCAACTTCAGGGAGATAGGATTAGT-GGCTTCAATCTGTTCCACTGCAAAATTCAAC
32163538 GG
129 GG
* * * *
32163540 GATAAGATCTGATGCGATCTACTCTACTGCAACCTTGGAGAGATAAGATCTGTTATTTTAATCCG
1 GATAAGACCTGATGCGATCTACTCTACTGCAACCTTAGAGAGATAAGATCTATTATTTGAATCCG
*
32163605 CTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTCAAT
66 CTCCACTCCAACTTCAGGGAGATAGGATTAGTGGCTTCAAT
32163646 GTACTCCACT
Statistics
Matches: 95, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
130 91 0.96
131 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (130 bp):
GATAAGACCTGATGCGATCTACTCTACTGCAACCTTAGAGAGATAAGATCTATTATTTGAATCCG
CTCCACTCCAACTTCAGGGAGATAGGATTAGTGGCTTCAATCTGTTCCACTGCAAAATTCAACGG
Found at i:32163674 original size:567 final size:567
Alignment explanation
Indices: 32162600--32164113 Score: 2432
Period size: 567 Copynumber: 2.7 Consensus size: 567
32162590 TGATTTCTCA
* * * *
32162600 GTCTGCTCCGCTGCAACCTCAGAGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAG
*
32162665 AGATAAGATCTATTGTTTTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTAA
66 AGATAAGATCTATTGTTTTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTCA
*
32162730 ATCTGCTCCACTGTAACCTCAAGAAGATAAGATTTTCCATCTTCGATCTGCTCTACTACTACTTA
131 ATCTGCTCCACTGTAACCTCAAGAAGATAAGATTTTCCATCTTCAATCTGCTCTACTACTACTTA
*
32162795 GGGAGATAAGATCTGTTTCTTCGGTCTGCTCCACTGCAACCTCAAGGAGATAAGACCTGATGTGA
196 GGGAGATAAGATCTGTTTCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGA
*
32162860 TCTACTCTGCTGTAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTCCCGCTTCAG
261 TCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTCCCGCTTCAG
32162925 GGAGATAGGATTATCGGCTTCAATCTGTTCCACTGCAAAACTCAACGAGATAAGATCTGATGCGA
326 GGAGATAGGATTATCGGCTTCAATCTGTTCCACTGCAAAACTCAACGAGATAAGATCTGATGCGA
32162990 TCTACTCTACTGCAACCTTGGAGAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAG
391 TCTACTCTACTGCAACCTTGGAGAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAG
* * *
32163055 TGAGATAGGATTAGTGGCTTTAATGTACTCCACTGTATCGTCAGAGAGGTAAAATCTGCCATCTT
456 GGAGATAGGATTAGTGGCTTCAATGTACTCCACTGTATCCTCAGAGAGGTAAAATCTGCCATCTT
32163120 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAGATTCTTCG
521 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAGATTCTTCG
32163167 GTCTGCTCCACTACAACTTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAG
32163232 AGATAAGATCTATTGTTTTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTCA
66 AGATAAGATCTATTGTTTTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTCA
* *
32163297 ATCTGCTCCATTGTAACCTCAAGAAGATAAGATTTTCCATCTTCAATCTGCTCTACTACTGCTTA
131 ATCTGCTCCACTGTAACCTCAAGAAGATAAGATTTTCCATCTTCAATCTGCTCTACTACTACTTA
32163362 GGGAGATAAGATCTGTTTCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGA
196 GGGAGATAAGATCTGTTTCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGA
32163427 TCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTCCCGCTTCAG
261 TCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTCCCGCTTCAG
* *
32163492 GGAGATAGGATTATCGGCTTCAATCTGTTCCACTGCAAAATTCAACGGGATAAGATCTGATGCGA
326 GGAGATAGGATTATCGGCTTCAATCTGTTCCACTGCAAAACTCAACGAGATAAGATCTGATGCGA
*
32163557 TCTACTCTACTGCAACCTTGGAGAGATAAGATCTGTTATTTTAATCCGCTCCACTGCAACTTCAG
391 TCTACTCTACTGCAACCTTGGAGAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAG
32163622 GGAGATAGGATTAGTGGCTTCAATGTACTCCACTGTATCCTCAGAGAGGTAAAATCTGCCATCTT
456 GGAGATAGGATTAGTGGCTTCAATGTACTCCACTGTATCCTCAGAGAGGTAAAATCTGCCATCTT
32163687 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAGATTCTTCG
521 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAGATTCTTCG
* * * * * *
32163734 GTCTGCTCCACTACAACTTCAGGGAGATAAAACCTGATGCGATCAACTCTACTACAACTTCAAAG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAG
** * * * * * * *
32163799 AGATAAGATCTGCTATTTCAATCTGCTCC-ATTACAACTTCAAGGACATAGGATTATCGGCTTCA
66 AGATAAGATCTATTGTTTTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTCA
* * * * * * * * *
32163863 ATCTGCTCCACTGCAACCTCATGGAGATAAGATTTGCCATATTCAGTCTG-TCCCACTGCAACTT
131 ATCTGCTCCACTGTAACCTCAAGAAGATAAGATTTTCCATCTTCAATCTGCT-CTACTACTAC-T
* * * *
32163927 TAGGGGGATAAGA-CTTGCTTTC-TCAGTCTACTCCGCTGCCAA-CTCAGGGAGATAAGACCTGA
194 TAGGGAGATAAGATC-TG-TTTCTTCGGTCTGCTCCACTG-CAACCTCAGGGAGATAAGACCTGA
* * * *
32163989 TGTGATCTACTCTGCTGCAACTTCAGATAGATAATATCTATTATTTGAA-CCGGCTCCACTGCCA
256 TGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCC-GCTCCACTCCCG
* * * **
32164053 CTTCAGGGAGAGAGGATTATCAGCTTCAATCTGCTCCACT--AAAACCTCAGGGAGATAAGAT
320 CTTCAGGGAGATAGGATTATCGGCTTCAATCTGTTCCACTGCAAAA-CTCAACGAGATAAGAT
32164114 TTGCCATCTT
Statistics
Matches: 883, Mismatches: 57, Indels: 15
0.92 0.06 0.02
Matches are distributed among these distances:
565 5 0.01
566 95 0.11
567 776 0.88
568 7 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (567 bp):
GTCTGCTCCACTACAACTTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAG
AGATAAGATCTATTGTTTTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTCA
ATCTGCTCCACTGTAACCTCAAGAAGATAAGATTTTCCATCTTCAATCTGCTCTACTACTACTTA
GGGAGATAAGATCTGTTTCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGA
TCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTCCCGCTTCAG
GGAGATAGGATTATCGGCTTCAATCTGTTCCACTGCAAAACTCAACGAGATAAGATCTGATGCGA
TCTACTCTACTGCAACCTTGGAGAGATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAG
GGAGATAGGATTAGTGGCTTCAATGTACTCCACTGTATCCTCAGAGAGGTAAAATCTGCCATCTT
CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAGATTCTTCG
Found at i:32164186 original size:44 final size:45
Alignment explanation
Indices: 32164076--32164202 Score: 130
Period size: 45 Copynumber: 2.8 Consensus size: 45
32164066 GGATTATCAG
* * ** *
32164076 CTTCAATCTGCTCCACTAAAACCTCAGGGAGATAAGATTTGCCAT
1 CTTCAGTCTGCGCCACTGCAACCTCAGGGAGATAAGACTTGCCAT
* * **
32164121 CTTCAGTCTGCGCCACTGCAACGTCAGGGGGATAAGACTTGCTTT
1 CTTCAGTCTGCGCCACTGCAACCTCAGGGAGATAAGACTTGCCAT
* * * *
32164166 C-TCGGTCTGCTCCGCTGCAACCTCAAGGAGATAAGAC
1 CTTCAGTCTGCGCCACTGCAACCTCAGGGAGATAAGAC
32164203 CTGATGTGAT
Statistics
Matches: 67, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
44 30 0.45
45 37 0.55
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (45 bp):
CTTCAGTCTGCGCCACTGCAACCTCAGGGAGATAAGACTTGCCAT
Found at i:32164375 original size:218 final size:218
Alignment explanation
Indices: 32163540--32164375 Score: 872
Period size: 218 Copynumber: 3.8 Consensus size: 218
32163530 AATTCAACGG
* * *
32163540 GATAAGATCTGATGCGATCTACTCTACTGCAACCTT-GGAGAGATAAGATCTGTTATTTTAATCC
1 GATAAGACCTGATGCGATCTACTCTACTGCAA-CTTCAGAGAGATAAGATCTATTATTTTAATCC
* *
32163604 GCTCCACTGCAACTTCAGGGAGATAGGATTAGT-GGCTTCAATGTACTCCACTGTATCCTC-AGA
65 GCTCCACTGCAACTTCAGGGAGATAGGATTA-TCGGCTTCAATCTACTCCACTGTAACCTCAAG-
* * ** **
32163667 GAGGTAAAATCTGCCATCTTC-GATCTGCTCCACTACTGC-TTAGGGAGATAAGA-TCTGAGATT
128 GAGATAAAATTTGCCATCTTCAG-TCTGCTCCACTACAACGTTAGGGAGATAAGACT-TG-CTTT
* * *
32163729 CTTCGGTCTGCTCCACTACAACTTCAGGGA
190 C-TCGGTCTGCTCCGCTGCAACCTCAGGGA
* * * * ** * *
32163759 GATAAAACCTGATGCGATCAACTCTACTACAACTTCAAAGAGATAAGATCTGCTATTTCAATCTG
1 GATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTTAATCCG
* * * * * * *
32163824 CTCCATTACAACTTCAAGGACATAGGATTATCGGCTTCAATCTGCTCCACTGCAACCTCATGGAG
66 CTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAATCTACTCCACTGTAACCTCAAGGAG
* * * * * *
32163889 ATAAGATTTGCCATATTCAGTCTG-TCCCACTGCAACTTTAGGGGGATAAGACTTGCTTTCTCAG
131 ATAAAATTTGCCATCTTCAGTCTGCT-CCACTACAACGTTAGGGAGATAAGACTTGCTTTCTCGG
*
32163953 TCTACTCCGCTGCCAA-CTCAGGGA
195 TCTGCTCCGCTG-CAACCTCAGGGA
* * * * *
32163977 GATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGATAGATAATATCTATTATTTGAA-CCG
1 GATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTTAATCC-
* * * * ** *
32164041 GCTCCACTGCCACTTCAGGGAGAGAGGATTATCAGCTTCAATCTGCTCCACTAAAACCTCAGGGA
65 GCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAATCTACTCCACTGTAACCTCAAGGA
* * * * *
32164106 GATAAGATTTGCCATCTTCAGTCTGCGCCACTGCAACGTCAGGGGGATAAGACTTGCTTTCTCGG
130 GATAAAATTTGCCATCTTCAGTCTGCTCCACTACAACGTTAGGGAGATAAGACTTGCTTTCTCGG
*
32164171 TCTGCTCCGCTGCAACCTCAAGGA
195 TCTGCTCCGCTGCAACCTCAGGGA
* * *
32164195 GATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTATTGTTTTTAATCC
1 GATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATT-ATTTTAATCC
* * *
32164260 GCTCCACTGTAACTTCAGGGAGATAGGATTAGT-GGCTTCAATGTACTCCAAC-GTATCCTCAAG
65 GCTCCACTGCAACTTCAGGGAGATAGGATTA-TCGGCTTCAATCTACTCC-ACTGTAACCTCAAG
* **
32164323 GAGGTAAAATCTT-CCATCTTC-GATCTGCTCCACTACTGC-TTAGGGAGATAAGA
128 GAGATAAAAT-TTGCCATCTTCAG-TCTGCTCCACTACAACGTTAGGGAGATAAGA
32164376 TCTATAATTT
Statistics
Matches: 516, Mismatches: 84, Indels: 35
0.81 0.13 0.06
Matches are distributed among these distances:
217 4 0.01
218 271 0.53
219 216 0.42
220 24 0.05
221 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (218 bp):
GATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTTAATCCG
CTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAATCTACTCCACTGTAACCTCAAGGAG
ATAAAATTTGCCATCTTCAGTCTGCTCCACTACAACGTTAGGGAGATAAGACTTGCTTTCTCGGT
CTGCTCCGCTGCAACCTCAGGGA
Found at i:32166734 original size:12 final size:12
Alignment explanation
Indices: 32166717--32166754 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
32166707 CCTTGGCCTC
32166717 TCCTTTTTCTTT
1 TCCTTTTTCTTT
32166729 TCCTTTTTCCTTT
1 TCCTTTTT-CTTT
*
32166742 TCATTTTTCTTT
1 TCCTTTTTCTTT
32166754 T
1 T
32166755 TATCATTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (12 bp):
TCCTTTTTCTTT
Found at i:32166815 original size:21 final size:21
Alignment explanation
Indices: 32166785--32166834 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
32166775 TGATTTTTCC
* *
32166785 TTTTTCTTTTTTT-TTTG-TT
1 TTTTTATTTTTTTGATTGATT
32166804 TTTTTCATTTTTTTGATTGATT
1 TTTTT-ATTTTTTTGATTGATT
32166826 TTTTTATTT
1 TTTTTATTT
32166835 CGATTTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 5 0.19
20 7 0.27
21 7 0.27
22 7 0.27
ACGTcount: A:0.08, C:0.04, G:0.06, T:0.82
Consensus pattern (21 bp):
TTTTTATTTTTTTGATTGATT
Found at i:32168632 original size:3 final size:3
Alignment explanation
Indices: 32168624--32168657 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
32168614 ATAAAGAAGG
32168624 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
32168658 GGATTAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:32169585 original size:19 final size:19
Alignment explanation
Indices: 32169556--32169602 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
32169546 ATGTACGGAG
*
32169556 GCACATGTGTGACAGTGGC
1 GCACGTGTGTGACAGTGGC
*
32169575 GCATGTGTGTGACAGTGGC
1 GCACGTGTGTGACAGTGGC
32169594 GCACGTGTG
1 GCACGTGTG
32169603 AGGGCAGAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.17, C:0.19, G:0.40, T:0.23
Consensus pattern (19 bp):
GCACGTGTGTGACAGTGGC
Found at i:32169928 original size:26 final size:26
Alignment explanation
Indices: 32169892--32169944 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
32169882 CAAAATTGGG
32169892 CATTACACATGCTATACTTATCCACT
1 CATTACACATGCTATACTTATCCACT
32169918 CATTACACATGCTATACTTATCCACT
1 CATTACACATGCTATACTTATCCACT
32169944 C
1 C
32169945 CTTAATACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.32, G:0.04, T:0.34
Consensus pattern (26 bp):
CATTACACATGCTATACTTATCCACT
Found at i:32178798 original size:25 final size:25
Alignment explanation
Indices: 32178763--32178838 Score: 116
Period size: 25 Copynumber: 3.0 Consensus size: 25
32178753 CGACAGCTCT
32178763 TATGAGCTTACCAATTCTCAACTCG
1 TATGAGCTTACCAATTCTCAACTCG
*
32178788 TATGAGTTTACCAATTCTCAACTCG
1 TATGAGCTTACCAATTCTCAACTCG
* * *
32178813 TATGAGCTGACCAATTCACAGCTCG
1 TATGAGCTTACCAATTCTCAACTCG
32178838 T
1 T
32178839 GAGAGCATAC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (25 bp):
TATGAGCTTACCAATTCTCAACTCG
Found at i:32178844 original size:25 final size:25
Alignment explanation
Indices: 32178763--32178869 Score: 108
Period size: 25 Copynumber: 4.3 Consensus size: 25
32178753 CGACAGCTCT
*
32178763 TATGAGCTTACCAATTCTCAACTCG
1 TATGAGCTTACCAATTCACAACTCG
* *
32178788 TATGAGTTTACCAATTCTCAACTCG
1 TATGAGCTTACCAATTCACAACTCG
* *
32178813 TATGAGCTGACCAATTCACAGCTCG
1 TATGAGCTTACCAATTCACAACTCG
* * * * *
32178838 TGA-GAGCATACCGATTCATAGCTCT
1 T-ATGAGCTTACCAATTCACAACTCG
32178863 TATGAGC
1 TATGAGC
32178870 ATACATGTAT
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
24 1 0.01
25 68 0.97
26 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (25 bp):
TATGAGCTTACCAATTCACAACTCG
Found at i:32178867 original size:50 final size:50
Alignment explanation
Indices: 32178756--32178869 Score: 124
Period size: 50 Copynumber: 2.3 Consensus size: 50
32178746 GGACACACGA
* * **
32178756 CAGCTCTTATGAGCTTACCAATTCTCAACTCGTATGAGTTTACCAATTCT
1 CAGCTCTTATGAGCTGACCAATTCACAACTCGTATGAGCATACCAATTCT
* * * *
32178806 CAACTCGTATGAGCTGACCAATTCACAGCTCGTGA-GAGCATACCGATTCAT
1 CAGCTCTTATGAGCTGACCAATTCACAACTCGT-ATGAGCATACCAATTC-T
32178857 -AGCTCTTATGAGC
1 CAGCTCTTATGAGC
32178870 ATACATGTAT
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
50 50 0.96
51 2 0.04
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (50 bp):
CAGCTCTTATGAGCTGACCAATTCACAACTCGTATGAGCATACCAATTCT
Found at i:32179538 original size:21 final size:18
Alignment explanation
Indices: 32179506--32179548 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 18
32179496 TAATGAGAGT
32179506 AAATGCAATGGAAATTAATG
1 AAATGCAATGGAAA-TAA-G
32179526 AAATGCAAATGGAAATAAG
1 AAATGC-AATGGAAATAAG
32179545 AAAT
1 AAAT
32179549 ATTTGAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.23
20 9 0.41
21 8 0.36
ACGTcount: A:0.56, C:0.05, G:0.19, T:0.21
Consensus pattern (18 bp):
AAATGCAATGGAAATAAG
Found at i:32180805 original size:20 final size:20
Alignment explanation
Indices: 32180771--32180810 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32180761 ACCCTACAGC
* * *
32180771 TTTGAAATTTTTCTACGTTT
1 TTTGAAAATTGTCTAAGTTT
32180791 TTTGAAAATTGTCTAAGTTT
1 TTTGAAAATTGTCTAAGTTT
32180811 CTGCTTTAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.07, G:0.12, T:0.55
Consensus pattern (20 bp):
TTTGAAAATTGTCTAAGTTT
Found at i:32181983 original size:28 final size:28
Alignment explanation
Indices: 32181944--32182005 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
32181934 CTATTCAGTA
* *
32181944 ACAGT-ACAGTGTGGGCCTTAGCCGAAT
1 ACAGTAACAGTGTGGGCCTTAACCCAAT
32181971 ACAGTAACAGTGTGGGCCTTAACCCAAT
1 ACAGTAACAGTGTGGGCCTTAACCCAAT
32181999 ACAGTAA
1 ACAGTAA
32182006 TATTACAGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 5 0.16
28 27 0.84
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
ACAGTAACAGTGTGGGCCTTAACCCAAT
Found at i:32182142 original size:26 final size:26
Alignment explanation
Indices: 32182121--32182218 Score: 124
Period size: 26 Copynumber: 3.8 Consensus size: 26
32182111 ATATTGCAAC
* * * *
32182121 AAAGCTGCCAATAATAGTATTGCAGT
1 AAAGCTGCCAGTAACAGTATCGCAGA
* * *
32182147 AAAGATGCCAGTAATAGTGTCGCAGA
1 AAAGCTGCCAGTAACAGTATCGCAGA
*
32182173 AAAGCTGCTAGTAACAGTATCGCAGA
1 AAAGCTGCCAGTAACAGTATCGCAGA
32182199 AAAGCTGCCAGTAACAGTAT
1 AAAGCTGCCAGTAACAGTAT
32182219 ACTTCCTTCA
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 62 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.21
Consensus pattern (26 bp):
AAAGCTGCCAGTAACAGTATCGCAGA
Found at i:32182418 original size:27 final size:27
Alignment explanation
Indices: 32182383--32182739 Score: 531
Period size: 27 Copynumber: 13.2 Consensus size: 27
32182373 GTTATAATAG
32182383 TCATTTTACCCTAT-GTGGGTATTTCGA
1 TCATTTTACCCTATAG-GGGTATTTCGA
* * * *
32182410 TAATCTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGA
* * *
32182437 TCATTTTATCCTATAGTGGTATTTTGA
1 TCATTTTACCCTATAGGGGTATTTCGA
32182464 TCATTTTACCCTATAGGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
32182491 TCATTTTACCCTATAGGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
*
32182518 TCATTTTACCCTATAGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGA
32182545 TCATTTTACCCTATAGGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
*
32182572 TCATTTTACCCTATAGAGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
*
32182599 TCATTTTACCCTATAAGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
*
32182626 TCATTTTACCCTATAGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGA
*
32182653 TCATTTTAGCCTATAGGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
32182680 TCATTTTACCCTATAGGGGTATTTC-A
1 TCATTTTACCCTATAGGGGTATTTCGA
* * *
32182706 GTTAGTTTT-CCTTATAGGGGTATTTCGG
1 -TCA-TTTTACCCTATAGGGGTATTTCGA
32182734 TCATTT
1 TCATTT
32182740 ATTGATGACT
Statistics
Matches: 299, Mismatches: 27, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
26 4 0.01
27 290 0.97
28 5 0.02
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTTCGA
Found at i:32182939 original size:19 final size:20
Alignment explanation
Indices: 32182917--32182958 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
32182907 AGCCCAATGA
*
32182917 GCCC-ACACGGCCCATTTCG
1 GCCCAACACGGCCCATTACG
*
32182936 GCCCAACATGGCCCATTACG
1 GCCCAACACGGCCCATTACG
32182956 GCC
1 GCC
32182959 TAAGCCCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.19, C:0.45, G:0.21, T:0.14
Consensus pattern (20 bp):
GCCCAACACGGCCCATTACG
Found at i:32186482 original size:50 final size:50
Alignment explanation
Indices: 32186381--32186713 Score: 373
Period size: 50 Copynumber: 6.6 Consensus size: 50
32186371 TGTGAGCCAG
* * *
32186381 TGTAAGACCATGTCTGGGACAAGGCATTGGCATCATTAAGATTATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA-C----CGA-GATGAGAGGTCCCA
* * * *
32186437 TGTAAGAACATGTCTGAGACATGACATTGGCACCGAGATGAGAGGTCCTA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* *
32186487 TGTAAGACCATGTCTAGGACATGGCATTGGCACCAAGATGAGAGGT-CCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * *
32186536 TGTAAGACCATGTGTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * *
32186586 TGTAAGACCATGTCTGGGACATGGCGTTGTCACC-AGGATGAGAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-GATGAGAGGTCCCA
* ** * * **
32186636 CGTAAGACCATGTCTGGGACATGTTATGGGCACCGATATGAGAACTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* *
32186686 TGTAAGACCATATCTGGGATATGGCATT
1 TGTAAGACCATGTCTGGGACATGGCATT
32186714 AGCAGTACAG
Statistics
Matches: 236, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
49 44 0.19
50 160 0.68
51 3 0.01
55 1 0.00
56 28 0.12
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
Found at i:32186570 original size:99 final size:100
Alignment explanation
Indices: 32186381--32186713 Score: 398
Period size: 99 Copynumber: 3.3 Consensus size: 100
32186371 TGTGAGCCAG
* * *
32186381 TGTAAGACCATGTCTGGGACAAGGCATTGGCATCATTAAGATTATGAGAGGTCCCATGTAAGAAC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CAAG---ATGAGAGGTCCCATGTAAGACC
* *
32186446 ATGTCTGAGACATGACATTGGCACCGAGATGAGAGGTCCTA
60 ATGTCTGGGACATGACATTGGCACCGAGATGAGAGGTCCCA
* *
32186487 TGTAAGACCATGTCTAGGACATGGCATTGGCACCAAGATGAGAGGT-CCATGTAAGACCATGTGT
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGGTCCCATGTAAGACCATGTCT
* * *
32186551 GGGACATGGCGTTGGCACCGAGATAAGAGGTCCCA
66 GGGACATGACATTGGCACCGAGATGAGAGGTCCCA
* * * **
32186586 TGTAAGACCATGTCTGGGACATGGCGTTGTCACCAGGATGAGAGGTCCCCCGTAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGGTCCCATGTAAGACCATGTCT
** * * **
32186651 GGGACATGTTATGGGCACCGATATGAGAACTCCCA
66 GGGACATGACATTGGCACCGAGATGAGAGGTCCCA
* *
32186686 TGTAAGACCATATCTGGGATATGGCATT
1 TGTAAGACCATGTCTGGGACATGGCATT
32186714 AGCAGTACAG
Statistics
Matches: 198, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
99 88 0.44
100 76 0.38
103 3 0.02
105 1 0.01
106 30 0.15
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (100 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGGTCCCATGTAAGACCATGTCT
GGGACATGACATTGGCACCGAGATGAGAGGTCCCA
Found at i:32186607 original size:149 final size:150
Alignment explanation
Indices: 32186427--32186710 Score: 374
Period size: 149 Copynumber: 1.9 Consensus size: 150
32186417 TAAGATTATG
* *
32186427 AGAGGTCCCATGTAAGAACATGTCTGAGACATGACATTGGCACC-GAGATGAGAGGTCCTATGTA
1 AGAGGTCCCATGTAAGAACATGTCTGAGACATGACATTGGCACCAG-GATGAGAGGTCCCACGTA
* ** * *
32186491 AGACCATGTCTAGGACATGGCATTGGCACCAAGATGAGAGGT-CCATGTAAGACCATGTGTGGGA
65 AGACCATGTCTAGGACATGGCATGGGCACCAAGATGAGAACTCCCATGTAAGACCATATCTGGGA
32186555 CATGGCGTTGGCACCGAGATA
130 CATGGCGTTGGCACCGAGATA
* * * * * *
32186576 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGTCACCAGGATGAGAGGTCCCCCGTAA
1 AGAGGTCCCATGTAAGAACATGTCTGAGACATGACATTGGCACCAGGATGAGAGGTCCCACGTAA
* ** * * *
32186641 GACCATGTCTGGGACATGTTATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTGGGAT
66 GACCATGTCTAGGACATGGCATGGGCACCAAGATGAGAACTCCCATGTAAGACCATATCTGGGAC
32186706 ATGGC
131 ATGGC
32186711 ATTAGCAGTA
Statistics
Matches: 114, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
149 88 0.77
150 26 0.23
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (150 bp):
AGAGGTCCCATGTAAGAACATGTCTGAGACATGACATTGGCACCAGGATGAGAGGTCCCACGTAA
GACCATGTCTAGGACATGGCATGGGCACCAAGATGAGAACTCCCATGTAAGACCATATCTGGGAC
ATGGCGTTGGCACCGAGATA
Found at i:32186737 original size:149 final size:148
Alignment explanation
Indices: 32186381--32186759 Score: 352
Period size: 149 Copynumber: 2.5 Consensus size: 148
32186371 TGTGAGCCAG
* * * * *
32186381 TGTAAGACCATGTCTGGGACAAGGCATTGGCATCATTAAGATTATGAGAGGTCCCATGTAAGAAC
1 TGTAAGACCATATCTGGGACATGGCATTGGCA-CA--GAGA-TA--ACA-GTCCCATGTAAGACC
* * * *
32186446 ATGTCTGAGACATGACATTGGCACCGAGATGAGAGGTCCTATGTAAGACCATGTCTAGGACATGG
59 ATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGG
* **
32186511 CATTGGCACCAAGATGAGAGGTCCA
124 CATGGGCACCAAGATGAGAACTCCA
* * * * *
32186536 TGTAAGACCATGTGTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGTAAGACCATGTCT
1 TGTAAGACCATATCTGGGACATGGCATTGGCACAGAGATAACA-GTCCCATGTAAGACCATGTCT
* * * * **
32186601 GGGACATGGCGTTGTCACC-AGGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGTTATGG
65 GGGACATGGCATTGGCACCGA-GATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGG
* *
32186665 GCACCGATATGAGAACTCCCA
129 GCACCAAGATGAGAACT-CCA
* * * *
32186686 TGTAAGACCATATCTGGGATATGGCATTAGCAGTACAG-GA-AACA-TCTCATGTAAGACTATGT
1 TGTAAGACCATATCTGGGACATGGCATT-G--GCACAGAGATAACAGTCCCATGTAAGACCATGT
32186748 CTGGGACATGGC
63 CTGGGACATGGC
32186760 TTTCGCATGT
Statistics
Matches: 189, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
148 1 0.01
149 116 0.61
150 27 0.14
151 6 0.03
152 5 0.03
153 4 0.02
154 1 0.01
155 29 0.15
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (148 bp):
TGTAAGACCATATCTGGGACATGGCATTGGCACAGAGATAACAGTCCCATGTAAGACCATGTCTG
GGACATGGCATTGGCACCGAGATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGC
ACCAAGATGAGAACTCCA
Found at i:32188284 original size:23 final size:23
Alignment explanation
Indices: 32188250--32188300 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
32188240 GGGAGAGAAA
*
32188250 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
32188273 TGTAATACCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
*
32188296 AGTAA
1 TGTAA
32188301 GAAAGTAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAC
Found at i:32189224 original size:43 final size:43
Alignment explanation
Indices: 32189132--32189296 Score: 199
Period size: 43 Copynumber: 3.8 Consensus size: 43
32189122 TGTGAAAAGA
* * * * * *
32189132 CGCCGCTAAAGATCATGGCCTTTAGAGGCGCTTCTGTTAAAAA
1 CGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTGTCACAAT
*
32189175 CACCGCTAAAGATCATGACCTTTAGCGGCGCTTTTGTCACAAT
1 CGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTGTCACAAT
* *
32189218 CGCCGCTACATG-TCATGACCTTTAGCGACGCTTTTGTCACAAAT
1 CGCCGCTA-AAGATCATGACCTTTAGCGGCGCTTTTGTCAC-AAT
* *
32189262 -GCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTG
1 CGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTG
32189297 AGAAAAGAGC
Statistics
Matches: 105, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 2 0.02
43 98 0.93
44 5 0.05
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (43 bp):
CGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTGTCACAAT
Found at i:32189309 original size:43 final size:43
Alignment explanation
Indices: 32189108--32189330 Score: 191
Period size: 43 Copynumber: 5.2 Consensus size: 43
32189098 CGCTATAGAA
* * *
32189108 TTTAGCGGCGTTTATGTGAAAAGACGCCGCTAAAGATCATGGCC
1 TTTAGCGGCGTTTTTGTCAAAAGA-GCCGCTAAAGATCATGACC
* * * * *
32189152 TTTAGAGGCGCTTCTGTTAAAA-ACACCGCTAAAGATCATGACC
1 TTTAGCGGCGTTTTTGTCAAAAGA-GCCGCTAAAGATCATGACC
* * ** *
32189195 TTTAGCGGCGCTTTTGTCACAATCGCCGCTACATG-TCATGACC
1 TTTAGCGGCGTTTTTGTCAAAAGAGCCGCTA-AAGATCATGACC
* * * *
32189238 TTTAGCGACGCTTTTGTCACAAA-TGCCGCTAAAGAACATGACC
1 TTTAGCGGCGTTTTTGTCA-AAAGAGCCGCTAAAGATCATGACC
** * * *
32189281 TTTAGCGGCGTTTTTGAGAAAAGAGCCGCTAAAAAACTTGACC
1 TTTAGCGGCGTTTTTGTCAAAAGAGCCGCTAAAGATCATGACC
32189324 TTTAGCG
1 TTTAGCG
32189331 TCACTTTTTA
Statistics
Matches: 149, Mismatches: 25, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
42 5 0.03
43 122 0.82
44 22 0.15
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTTTGTCAAAAGAGCCGCTAAAGATCATGACC
Found at i:32189338 original size:86 final size:86
Alignment explanation
Indices: 32189108--32189380 Score: 246
Period size: 86 Copynumber: 3.2 Consensus size: 86
32189098 CGCTATAGAA
* * * * * * * *
32189108 TTTAGCGGCGTTTATGTGAAAAGACGCCGCTAAAGATCATGGCCTTTAGAGGCGCTTCTGTTAAA
1 TTTAGCGGCGTTTTTGTGAAAAGA-GCCGCTAAAAATCATGACCTTTAGCGACGCTTTTGTCACA
* *
32189173 AACACCGCTAAAGATCATGACC
65 AACGCCGCTAAAGAACATGACC
* * * ** * **
32189195 TTTAGCGGCGCTTTTGTCACAATCGCCGCTACATGTCATGACCTTTAGCGACGCTTTTGTCACAA
1 TTTAGCGGCGTTTTTGTGAAAAGAGCCGCTAAAAATCATGACCTTTAGCGACGCTTTTGTCACAA
*
32189260 ATGCCGCTAAAGAACATGACC
66 ACGCCGCTAAAGAACATGACC
* * * * * *
32189281 TTTAGCGGCGTTTTTGAGAAAAGAGCCGCTAAAAAACTTGACCTTTAGCGTCACTTTTTATCACA
1 TTTAGCGGCGTTTTTGTGAAAAGAGCCGCTAAAAATCATGACCTTTAGCGACGC-TTTTGTCACA
* *
32189346 AACGCCACTATAA-AACA-AACC
65 AACGCCGCTA-AAGAACATGACC
32189367 TTTAGCCGGC-TTTT
1 TTTAG-CGGCGTTTT
32189381 CTCAAAAACG
Statistics
Matches: 148, Mismatches: 35, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
86 103 0.70
87 43 0.29
88 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (86 bp):
TTTAGCGGCGTTTTTGTGAAAAGAGCCGCTAAAAATCATGACCTTTAGCGACGCTTTTGTCACAA
ACGCCGCTAAAGAACATGACC
Found at i:32192277 original size:28 final size:28
Alignment explanation
Indices: 32192245--32192306 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
32192235 CTAACGGCAT
32192245 CGTTTTCTACCTTTCGGGGCTTTAGCGG
1 CGTTTTCTACCTTTCGGGGCTTTAGCGG
*
32192273 CGTTTTCTACTTTTCGGGGCTTTAGCGG
1 CGTTTTCTACCTTTCGGGGCTTTAGCGG
32192301 CGTTTT
1 CGTTTT
32192307 GGGAAAGCGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.06, C:0.23, G:0.27, T:0.44
Consensus pattern (28 bp):
CGTTTTCTACCTTTCGGGGCTTTAGCGG
Found at i:32192360 original size:41 final size:40
Alignment explanation
Indices: 32192291--32192418 Score: 139
Period size: 41 Copynumber: 3.1 Consensus size: 40
32192281 ACTTTTCGGG
**
32192291 GCTTTAGCGGCGTTTTGGGAAAGCGCCGCTAATGCTCAGA
1 GCTTTAGCGGCGTTTTGTAAAAGCGCCGCTAATGCTCAGA
* * * *
32192331 TCTTTAGCGGCGTTTTTGTAAAAGCGCCGCTACTGCTCGGG
1 GCTTTAGCGGCG-TTTTGTAAAAGCGCCGCTAATGCTCAGA
* * * * *
32192372 GCTTTAGCGGTGTTTTCTAAGAAGCGCTGCTAATGCTCGGG
1 GCTTTAGCGGCGTTTTGTAA-AAGCGCCGCTAATGCTCAGA
32192413 GCTTTA
1 GCTTTA
32192419 ACGCCGCTAA
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
40 18 0.24
41 57 0.76
ACGTcount: A:0.17, C:0.22, G:0.30, T:0.30
Consensus pattern (40 bp):
GCTTTAGCGGCGTTTTGTAAAAGCGCCGCTAATGCTCAGA
Found at i:32192854 original size:66 final size:66
Alignment explanation
Indices: 32192773--32192910 Score: 251
Period size: 66 Copynumber: 2.1 Consensus size: 66
32192763 TTAGGGCCGG
*
32192773 TTTAA-GAGTTACAATTTTAATGTTTATAGATTATGGAATTAGGGACTATGGATTAGGGATTTTG
1 TTTAAGGAGTTACAATTTTAAGGTTTATAGATTATGGAATTAGGGACTATGGATTAGGGATTTTG
32192837 A
66 A
*
32192838 TTTAAGGAGTTACAATTTTAAGGTTTATAGATTATGGAATTAGGGATTATGGATTAGGGATTTTG
1 TTTAAGGAGTTACAATTTTAAGGTTTATAGATTATGGAATTAGGGACTATGGATTAGGGATTTTG
32192903 A
66 A
32192904 TTTAAGG
1 TTTAAGG
32192911 GTTGTGATTT
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
65 5 0.07
66 65 0.93
ACGTcount: A:0.32, C:0.02, G:0.25, T:0.41
Consensus pattern (66 bp):
TTTAAGGAGTTACAATTTTAAGGTTTATAGATTATGGAATTAGGGACTATGGATTAGGGATTTTG
A
Found at i:32192895 original size:14 final size:15
Alignment explanation
Indices: 32192867--32192899 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
32192857 AAGGTTTATA
32192867 GATTATGGAATTAGG
1 GATTATGGAATTAGG
32192882 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
32192896 GATT
1 GATT
32192900 TTGATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:32192979 original size:36 final size:34
Alignment explanation
Indices: 32192916--32192997 Score: 94
Period size: 36 Copynumber: 2.4 Consensus size: 34
32192906 TAAGGGTTGT
* *
32192916 GATTTAAGGTGTATGGGTTAGGGGTTAGGGGTTATG
1 GATTTAAGGTTTATGGATTAGGGGTTA--GGTTATG
* *
32192952 GATTTAAGGTTTATGGATTCGGTGTTAGGTTATG
1 GATTTAAGGTTTATGGATTAGGGGTTAGGTTATG
*
32192986 G-TTTAGGGTTTA
1 GATTTAAGGTTTA
32192998 GATTAATTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
33 10 0.24
34 8 0.20
36 23 0.56
ACGTcount: A:0.20, C:0.01, G:0.38, T:0.41
Consensus pattern (34 bp):
GATTTAAGGTTTATGGATTAGGGGTTAGGTTATG
Found at i:32194172 original size:149 final size:148
Alignment explanation
Indices: 32193992--32194343 Score: 539
Period size: 149 Copynumber: 2.4 Consensus size: 148
32193982 ACAAAATAAA
* * *
32193992 AGATTTTTAGCATAGCAAAACAATGTCGTTTTATTCCAAATGAAATAATTTTTTGTGGCGTTTTT
1 AGATTTTTAGCATAGCAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTTT
* **
32194057 ATGAAAAACG-CAGCAAAAGGTAAGCAATAGCGGCGTTTTTATAGAAAATGCCACAAAAAATAAT
66 ATGAAAAACGCCA-CAAAAGGTAAGCAATAGCGGCGTTTTTATAAAAAACACCA-AAAAAATAAT
32194121 TTTACATTAAAAAAATAGCG
129 TTTACATTAAAAAAATAGCG
*
32194141 AGATTTTTAGCATATCAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTTT
1 AGATTTTTAGCATAGCAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTTT
32194206 ATGAAAAACGCCACAAAAGGTAAGCAATAGCGGCGTTTTTATAAAAAACACCAAAAAAATAATTT
66 ATGAAAAACGCCACAAAAGGTAAGCAATAGCGGCGTTTTTATAAAAAACACCAAAAAAATAATTT
*
32194271 TACTTTAAAAAAATAGCG
131 TACATTAAAAAAATAGCG
** * * * *
32194289 CCA-TTTTA-TATAGCAAAATAGTGTCGTTTTATTCTAAATTAAATAATTTTTTGCG
1 AGATTTTTAGCATAGCAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTGCG
32194344 ATTTTTTTAA
Statistics
Matches: 187, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
146 42 0.22
147 5 0.03
148 30 0.16
149 108 0.58
150 2 0.01
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.33
Consensus pattern (148 bp):
AGATTTTTAGCATAGCAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTGCGGCGTTTTT
ATGAAAAACGCCACAAAAGGTAAGCAATAGCGGCGTTTTTATAAAAAACACCAAAAAAATAATTT
TACATTAAAAAAATAGCG
Found at i:32194531 original size:15 final size:15
Alignment explanation
Indices: 32194511--32194541 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32194501 ATGCCCATTG
32194511 CTATCTTTTCTTCCT
1 CTATCTTTTCTTCCT
32194526 CTATCTTTTCTTCCT
1 CTATCTTTTCTTCCT
32194541 C
1 C
32194542 AACCCCAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.35, G:0.00, T:0.58
Consensus pattern (15 bp):
CTATCTTTTCTTCCT
Found at i:32200118 original size:7 final size:7
Alignment explanation
Indices: 32200106--32200199 Score: 57
Period size: 7 Copynumber: 13.1 Consensus size: 7
32200096 ACTAATTAAT
32200106 CTAAACC
1 CTAAACC
32200113 CTAAACCC
1 CTAAA-CC
**
32200121 CTATCCC
1 CTAAACC
*
32200128 CTAAACT
1 CTAAACC
*
32200135 ATAAACCC
1 CTAAA-CC
32200143 CT-AACC
1 CTAAACC
32200149 CTTAAACC
1 C-TAAACC
*
32200157 ATAAACC
1 CTAAACC
*
32200164 C-CAACC
1 CTAAACC
32200170 CTTAAACC
1 C-TAAACC
*
32200178 ATAAACC
1 CTAAACC
* *
32200185 ATAATCC
1 CTAAACC
32200192 CTAAACC
1 CTAAACC
32200199 C
1 C
32200200 ATAATCCACA
Statistics
Matches: 65, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
6 8 0.12
7 42 0.65
8 15 0.23
ACGTcount: A:0.40, C:0.41, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:32200131 original size:22 final size:22
Alignment explanation
Indices: 32200106--32200203 Score: 110
Period size: 22 Copynumber: 4.5 Consensus size: 22
32200096 ACTAATTAAT
* *
32200106 CTAAACCCTAAACCCCTATCCC
1 CTAAACCATAAACCCCTAACCC
*
32200128 CTAAACTATAAACCCCTAACCC
1 CTAAACCATAAACCCCTAACCC
*
32200150 TTAAACCATAAACCCC-AACCC
1 CTAAACCATAAACCCCTAACCC
* * *
32200171 TTAAACCATAAA-CCATAATCC
1 CTAAACCATAAACCCCTAACCC
32200192 CTAAACCCATAA
1 CTAAA-CCATAA
32200204 TCCACAAACC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
20 2 0.03
21 25 0.38
22 39 0.59
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.18
Consensus pattern (22 bp):
CTAAACCATAAACCCCTAACCC
Found at i:32200169 original size:21 final size:22
Alignment explanation
Indices: 32200107--32200184 Score: 113
Period size: 22 Copynumber: 3.6 Consensus size: 22
32200097 CTAATTAATC
* * *
32200107 TAAACCCTAAACCCCTATCCCC
1 TAAACCATAAACCCCTAACCCT
*
32200129 TAAACTATAAACCCCTAACCCT
1 TAAACCATAAACCCCTAACCCT
32200151 TAAACCATAAACCCC-AACCCT
1 TAAACCATAAACCCCTAACCCT
32200172 TAAACCATAAACC
1 TAAACCATAAACC
32200185 ATAATCCCTA
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
21 19 0.37
22 32 0.63
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.18
Consensus pattern (22 bp):
TAAACCATAAACCCCTAACCCT
Found at i:32200596 original size:41 final size:40
Alignment explanation
Indices: 32200539--32200771 Score: 200
Period size: 41 Copynumber: 5.7 Consensus size: 40
32200529 AATGTTTTTT
*
32200539 GCGGCGCTTTTTCAAAAAAACCGCTAAAGTCCTTAGCATTA
1 GCGGCGCTTTTTCAAAAACACCGCTAAAG-CCTTAGCATTA
* * * **
32200580 GCGGCGCTTTTCCAAAAACGCTGCTAAAGCCCCGAGCATTA
1 GCGGCGCTTTTTCAAAAACACCGCTAAAG-CCTTAGCATTA
* *
32200621 GCGGCGCTTTTTCAAAAACGCCGCTAAAGACTTGAGCATTA
1 GCGGCGCTTTTTCAAAAACACCGCTAAAGCCTT-AGCATTA
* ** *
32200662 GCGACGCTTTTTC-AAAACTACCGCTAAA-AATAGAGCATTA
1 GCGGCGCTTTTTCAAAAAC-ACCGCTAAAGCCT-TAGCATTA
* * * **
32200702 GCGGCACTTCTTCAAAAACGCCGCTAAAGCCCCATGCATTA
1 GCGGCGCTTTTTCAAAAACACCGCTAAAGCCTTA-GCATTA
*** * *
32200743 GCGATACTTTTTGAAAAACACCACTAAAG
1 GCGGCGCTTTTTCAAAAACACCGCTAAAG
32200772 TCTCGAAAAT
Statistics
Matches: 156, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
40 34 0.22
41 122 0.78
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (40 bp):
GCGGCGCTTTTTCAAAAACACCGCTAAAGCCTTAGCATTA
Found at i:32200678 original size:82 final size:80
Alignment explanation
Indices: 32200539--32200730 Score: 226
Period size: 82 Copynumber: 2.4 Consensus size: 80
32200529 AATGTTTTTT
** * *
32200539 GCGGCGCTTTTTCAAAAAAACCGCTAAAGTCCTTAGCATTAGCGGCGCTTTTCCAAAA-ACGCTG
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGTACTTAGCATTAGCGACGCTTTTCCAAAACAC-C-G
** *
32200603 CTAAAGCCCCGAGCATTA
64 CTAAA-AACAGAGCATTA
*
32200621 GCGGCGCTTTTTCAAAAACGCCGCTAAAG-ACTTGAGCATTAGCGACGCTTTTTCAAAACTACCG
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGTACTT-AGCATTAGCGACGCTTTTCCAAAAC-ACCG
*
32200685 CTAAAAATAGAGCATTA
64 CTAAAAACAGAGCATTA
* *
32200702 GCGGCACTTCTTCAAAAACGCCGCTAAAG
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAG
32200731 CCCCATGCAT
Statistics
Matches: 96, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
81 38 0.40
82 55 0.57
83 1 0.01
84 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (80 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGTACTTAGCATTAGCGACGCTTTTCCAAAACACCGCT
AAAAACAGAGCATTA
Found at i:32200770 original size:81 final size:81
Alignment explanation
Indices: 32200613--32200770 Score: 203
Period size: 81 Copynumber: 2.0 Consensus size: 81
32200603 CTAAAGCCCC
* * *** * *
32200613 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACTTGAGCATTAGCGACGCTTTTTCAAA
1 GAGCATTAGCGGCACTTCTTCAAAAACGCCGCTAAAGACCCCAGCATTAGCGACACTTTTTAAAA
*
32200678 ACTACCGCTAAAAATA
66 ACTACCACTAAAAATA
*
32200694 GAGCATTAGCGGCACTTCTTCAAAAACGCCGCTAAAG-CCCCATGCATTAGCGATACTTTTTGAA
1 GAGCATTAGCGGCACTTCTTCAAAAACGCCGCTAAAGACCCCA-GCATTAGCGACACTTTTT-AA
32200758 AAAC-ACCACTAAA
64 AAACTACCACTAAA
32200771 GTCTCGAAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 2 0.03
81 59 0.89
82 5 0.08
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (81 bp):
GAGCATTAGCGGCACTTCTTCAAAAACGCCGCTAAAGACCCCAGCATTAGCGACACTTTTTAAAA
ACTACCACTAAAAATA
Found at i:32200968 original size:12 final size:12
Alignment explanation
Indices: 32200951--32200978 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32200941 TTTTTTATCC
32200951 AAACGCCACTAA
1 AAACGCCACTAA
32200963 AAACGCCACTAA
1 AAACGCCACTAA
32200975 AAAC
1 AAAC
32200979 CTGTTTTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.32, G:0.07, T:0.07
Consensus pattern (12 bp):
AAACGCCACTAA
Found at i:32213618 original size:12 final size:12
Alignment explanation
Indices: 32213601--32213634 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
32213591 CTCTATATCT
32213601 AGTGGCCAATCC
1 AGTGGCCAATCC
32213613 AGTGGCCAATCC
1 AGTGGCCAATCC
32213625 AGTGGCCAAT
1 AGTGGCCAAT
32213635 TTCTAAAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.18
Consensus pattern (12 bp):
AGTGGCCAATCC
Found at i:32217730 original size:15 final size:16
Alignment explanation
Indices: 32217712--32217751 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
32217702 CTACCTGGAG
32217712 TTTTCACAGTC-CAGT
1 TTTTCACAGTCACAGT
*
32217727 TTTTCACAGTCTATAGT
1 TTTTCACAGTC-ACAGT
32217744 TTTTCACA
1 TTTTCACA
32217752 ATCTATAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.50
17 11 0.50
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.45
Consensus pattern (16 bp):
TTTTCACAGTCACAGT
Found at i:32217746 original size:17 final size:17
Alignment explanation
Indices: 32217712--32217760 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
32217702 CTACCTGGAG
*
32217712 TTTTCACAGTC--CAGT
1 TTTTCACAGTCTATAGT
32217727 TTTTCACAGTCTATAGT
1 TTTTCACAGTCTATAGT
*
32217744 TTTTCACAATCTATAGT
1 TTTTCACAGTCTATAGT
32217761 ATCAACTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 11 0.37
17 19 0.63
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.45
Consensus pattern (17 bp):
TTTTCACAGTCTATAGT
Found at i:32218863 original size:22 final size:22
Alignment explanation
Indices: 32218838--32218882 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
32218828 AGATCATGAC
32218838 AAATAT-AATCGCATACATATCA
1 AAATATCAATCGCA-ACATATCA
*
32218860 AAATATCAATCTCAACATATCA
1 AAATATCAATCGCAACATATCA
32218882 A
1 A
32218883 TCATCATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.51, C:0.20, G:0.02, T:0.27
Consensus pattern (22 bp):
AAATATCAATCGCAACATATCA
Found at i:32241567 original size:20 final size:20
Alignment explanation
Indices: 32241542--32241581 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
32241532 GGTAAATGAT
32241542 GTTTTGGTACAATTGTGGTG
1 GTTTTGGTACAATTGTGGTG
*
32241562 GTTTTGGTATAATTGTGGTG
1 GTTTTGGTACAATTGTGGTG
32241582 CCTTTGAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.03, G:0.35, T:0.47
Consensus pattern (20 bp):
GTTTTGGTACAATTGTGGTG
Found at i:32241587 original size:20 final size:20
Alignment explanation
Indices: 32241544--32241587 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
32241534 TAAATGATGT
**
32241544 TTTGGTACAATTGTGGTGGT
1 TTTGGTACAATTGTGGTGCC
*
32241564 TTTGGTATAATTGTGGTGCC
1 TTTGGTACAATTGTGGTGCC
32241584 TTTG
1 TTTG
32241588 AATGGCATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.07, G:0.32, T:0.48
Consensus pattern (20 bp):
TTTGGTACAATTGTGGTGCC
Found at i:32248184 original size:38 final size:38
Alignment explanation
Indices: 32248130--32248203 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
32248120 TTTAACCATT
* *
32248130 AGAATAATATCGGATACATGAAATCTCGCACACTAATA
1 AGAATAATATCAGATACATGAAATCTCACACACTAATA
32248168 AGAATAATATCAGATACATGAAATCTCACACACTAA
1 AGAATAATATCAGATACATGAAATCTCACACACTAA
32248204 GTGCCAACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.47, C:0.19, G:0.11, T:0.23
Consensus pattern (38 bp):
AGAATAATATCAGATACATGAAATCTCACACACTAATA
Found at i:32267588 original size:13 final size:14
Alignment explanation
Indices: 32267570--32267598 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32267560 AAGTGATTTA
32267570 AAGGTT-AATTAGT
1 AAGGTTAAATTAGT
32267583 AAGGTTAAATTAGT
1 AAGGTTAAATTAGT
32267597 AA
1 AA
32267599 TTTAATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (14 bp):
AAGGTTAAATTAGT
Found at i:32282368 original size:20 final size:21
Alignment explanation
Indices: 32282343--32282382 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
32282333 TAGGGCAGGA
32282343 ATATTGATACCTT-AGAAAAT
1 ATATTGATACCTTAAGAAAAT
*
32282363 ATATTGATACTTTAAGAAAA
1 ATATTGATACCTTAAGAAAA
32282383 GTATCAATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.35
Consensus pattern (21 bp):
ATATTGATACCTTAAGAAAAT
Found at i:32285357 original size:17 final size:17
Alignment explanation
Indices: 32285335--32285369 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
32285325 TAAGTCAAAA
32285335 GCCTTAGGTTCATGAGT
1 GCCTTAGGTTCATGAGT
32285352 GCCTTAGGTTCATGAGT
1 GCCTTAGGTTCATGAGT
32285369 G
1 G
32285370 AATTCCATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.34
Consensus pattern (17 bp):
GCCTTAGGTTCATGAGT
Found at i:32288269 original size:40 final size:40
Alignment explanation
Indices: 32288018--32288268 Score: 349
Period size: 40 Copynumber: 6.3 Consensus size: 40
32288008 AATTATACTT
*
32288018 TGTTTGTACTTTGGTACCTCTGATTGCACATACGTGCCCC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
* * *
32288058 TATTTCTACTTTGGTACCCCTGATTGCACTTACGTGCCCC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
* * *
32288098 TGTTTGTACTTTGGTACCCTTGAATACACATACGTGCCCC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
* * *
32288138 TTTTTGTACTTTGATACCCCTGGTTGCACATACGTGCCCC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
* *
32288178 TGTTTGTGCTTTTGTACCCCTGATTGCACATACGTGCCCC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
* * * *
32288218 CGTTTGTACTTCGGTACCCCTGATTGCACATACGTTCACC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
*
32288258 TGTTTATACTT
1 TGTTTGTACTT
32288269 CAGTAATTTC
Statistics
Matches: 182, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 182 1.00
ACGTcount: A:0.16, C:0.29, G:0.18, T:0.37
Consensus pattern (40 bp):
TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
Found at i:32294796 original size:20 final size:19
Alignment explanation
Indices: 32294773--32294916 Score: 74
Period size: 20 Copynumber: 7.2 Consensus size: 19
32294763 GTAAATTATA
32294773 CCCTGTTTGTACTTCTGTAC
1 CCCTGTTTGTACTTC-GTAC
* ** * *
32294793 CCCTGATTAAACATACGTGC
1 CCCTGTTTGTAC-TTCGTAC
32294813 CCCTGTTTGTACTTCGATAC
1 CCCTGTTTGTACTTCG-TAC
* * * **
32294833 CCCTGATTGCACTTTCTTGT
1 CCCTGTTTGTAC-TTCGTAC
*
32294853 GCCTGTTTGTACTTCGGTAC
1 CCCTGTTTGTACTTC-GTAC
* * *
32294873 CCCTGATTGCACATACGTGA-
1 CCCTGTTTGTAC-TTCGT-AC
*
32294893 CCCTTTTTGTACTTCGGTAC
1 CCCTGTTTGTACTTC-GTAC
32294913 CCCT
1 CCCT
32294917 AATTGCACAT
Statistics
Matches: 87, Mismatches: 29, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
19 9 0.10
20 70 0.80
21 8 0.09
ACGTcount: A:0.15, C:0.31, G:0.17, T:0.38
Consensus pattern (19 bp):
CCCTGTTTGTACTTCGTAC
Found at i:32294834 original size:40 final size:39
Alignment explanation
Indices: 32294773--32295027 Score: 262
Period size: 40 Copynumber: 6.4 Consensus size: 39
32294763 GTAAATTATA
**
32294773 CCCTGTTTGTACTTCTGTACCCCTGATTAAACATACGTGC
1 CCCTGTTTGTACTTC-GTACCCCTGATTGCACATACGTGC
* * * *
32294813 CCCTGTTTGTACTTCGATACCCCTGATTGCACTTTCTTGT
1 CCCTGTTTGTACTTCG-TACCCCTGATTGCACATACGTGC
* *
32294853 GCCTGTTTGTACTTCGGTACCCCTGATTGCACATACGTGA
1 CCCTGTTTGTACTTC-GTACCCCTGATTGCACATACGTGC
* *
32294893 CCCTTTTTGTACTTCGGTACCCCTAATTGCACATACGTGC
1 CCCTGTTTGTACTTC-GTACCCCTGATTGCACATACGTGC
* * * * *
32294933 CCCTATTTTTATTTTTGTACCCCTG-CTGCACATACGTGC
1 CCCTGTTTGTA-CTTCGTACCCCTGATTGCACATACGTGC
*
32294972 CTCC-GTTTGTACTTCAGTATCCCTGATTGCACATACGTGC
1 C-CCTGTTTGTACTTC-GTACCCCTGATTGCACATACGTGC
* * *
32295012 CCTTCTTTATACTTCG
1 CCCTGTTTGTACTTCG
32295028 GTAATTTAAA
Statistics
Matches: 178, Mismatches: 30, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.01
39 30 0.17
40 143 0.80
41 3 0.02
ACGTcount: A:0.16, C:0.30, G:0.16, T:0.38
Consensus pattern (39 bp):
CCCTGTTTGTACTTCGTACCCCTGATTGCACATACGTGC
Found at i:32294935 original size:20 final size:20
Alignment explanation
Indices: 32294872--32294937 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
32294862 TACTTCGGTA
*
32294872 CCCCTGATTGCACATACGTG
1 CCCCTAATTGCACATACGTG
* ** * * *
32294892 ACCCTTTTTGTAC-TTCGGTA
1 CCCCTAATTGCACATAC-GTG
32294912 CCCCTAATTGCACATACGTG
1 CCCCTAATTGCACATACGTG
32294932 CCCCTA
1 CCCCTA
32294938 TTTTTATTTT
Statistics
Matches: 32, Mismatches: 12, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.20, C:0.35, G:0.15, T:0.30
Consensus pattern (20 bp):
CCCCTAATTGCACATACGTG
Found at i:32298424 original size:45 final size:45
Alignment explanation
Indices: 32298346--32298457 Score: 125
Period size: 45 Copynumber: 2.5 Consensus size: 45
32298336 TCCTACTTAC
* * * ****
32298346 CATGATGTCATAGCGTCTTTTAGCCATGGTCTTACTCATTTTTGT
1 CATGATGTCATAGCATCTTTCAGCCATGATCTTACTCATTACCAT
* **
32298391 CATGATGTCATAGCATCATTCAGTTATGATCTTACTCATTACCAT
1 CATGATGTCATAGCATCTTTCAGCCATGATCTTACTCATTACCAT
*
32298436 CGTGATGTCATAGCATCTTTCA
1 CATGATGTCATAGCATCTTTCA
32298458 TTCGCCTTCC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.40
Consensus pattern (45 bp):
CATGATGTCATAGCATCTTTCAGCCATGATCTTACTCATTACCAT
Found at i:32304080 original size:43 final size:43
Alignment explanation
Indices: 32303971--32304087 Score: 148
Period size: 43 Copynumber: 2.7 Consensus size: 43
32303961 TAAAAAAATT
* *
32303971 AATTTACAAA-AGGAGAAGATAAT-TCTGGGTTGTTGAAAAAAT
1 AATTTAAAAAGAGGAGAAGATAATCT-TGGGTTGTTGAAAAAAG
* ** *
32304013 AATTTAAATAGATAAGAACATAATCTTGGGTTGTTGAAAAAAG
1 AATTTAAAAAGAGGAGAAGATAATCTTGGGTTGTTGAAAAAAG
*
32304056 AATTTAAAAAGAGGAGAAGGTAATCTTGGGTT
1 AATTTAAAAAGAGGAGAAGATAATCTTGGGTT
32304088 ATTAGATTTA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 8 0.13
43 53 0.85
44 1 0.02
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.29
Consensus pattern (43 bp):
AATTTAAAAAGAGGAGAAGATAATCTTGGGTTGTTGAAAAAAG
Found at i:32313832 original size:43 final size:43
Alignment explanation
Indices: 32313773--32313893 Score: 118
Period size: 44 Copynumber: 2.8 Consensus size: 43
32313763 TTATCCTAGA
* * *
32313773 AAAAAAG-AATTTAAAAAATGAGAATATAATCTTAAGTTGTTG
1 AAAAAAGAAATTAAAAAAAAGAGAAAATAATCTTAAGTTGTTG
* * * **
32313815 AAAACAGAAATTAAAAAAGAAAAGAAGATAATCTTGGGTTGTTG
1 AAAAAAGAAATTAAAAAA-AAGAGAAAATAATCTTAAGTTGTTG
* * *
32313859 AAAAAAGAATTTAAAAAGAGGAGAAAAATAATCTT
1 AAAAAAGAAATTAAAAAAAAGAG-AAAATAATCTT
32313894 GGGTTGTTAG
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
42 6 0.10
43 12 0.19
44 45 0.71
ACGTcount: A:0.55, C:0.03, G:0.17, T:0.25
Consensus pattern (43 bp):
AAAAAAGAAATTAAAAAAAAGAGAAAATAATCTTAAGTTGTTG
Found at i:32313856 original size:44 final size:45
Alignment explanation
Indices: 32313793--32313901 Score: 134
Period size: 44 Copynumber: 2.4 Consensus size: 45
32313783 TTAAAAAATG
** *
32313793 AGAATATAATCTTAAGTTGTTGAAAACAGAAATTAAAAA-A-GAAA
1 AGAA-ATAATCTTGGGTTGTTGAAAAAAGAAATTAAAAAGAGGAAA
* *
32313837 AGAAGATAATCTTGGGTTGTTGAAAAAAGAATTTAAAAAGAGGAGA
1 AGAA-ATAATCTTGGGTTGTTGAAAAAAGAAATTAAAAAGAGGAAA
32313883 A-AAATAATCTTGGGTTGTT
1 AGAAATAATCTTGGGTTGTT
32313902 AGATTTACCC
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
44 50 0.88
45 3 0.05
46 4 0.07
ACGTcount: A:0.49, C:0.04, G:0.20, T:0.28
Consensus pattern (45 bp):
AGAAATAATCTTGGGTTGTTGAAAAAAGAAATTAAAAAGAGGAAA
Found at i:32316272 original size:28 final size:28
Alignment explanation
Indices: 32316235--32316376 Score: 203
Period size: 28 Copynumber: 5.1 Consensus size: 28
32316225 GGCAAATCTA
* * *
32316235 TCATAGTTCGCCTCAAAGGCTTATTCCT
1 TCATAATTCGCCACAAAGGCTTATTCTT
32316263 TCATAATTCGCCACAAAGGCTTATTCTT
1 TCATAATTCGCCACAAAGGCTTATTCTT
* *
32316291 TCATAATTTGCCACAAAGACTTATTCTT
1 TCATAATTCGCCACAAAGGCTTATTCTT
* *
32316319 TCATAGTTCACCACAAAGGCTTATTCTT
1 TCATAATTCGCCACAAAGGCTTATTCTT
* *
32316347 TCATAATTTGCCACAAAGACTTATTCTT
1 TCATAATTCGCCACAAAGGCTTATTCTT
32316375 TC
1 TC
32316377 CTCACGTGTT
Statistics
Matches: 101, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 101 1.00
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (28 bp):
TCATAATTCGCCACAAAGGCTTATTCTT
Found at i:32324073 original size:28 final size:28
Alignment explanation
Indices: 32324015--32324140 Score: 103
Period size: 28 Copynumber: 4.5 Consensus size: 28
32324005 AGGTCATGTG
* * * *
32324015 ACAAAGGC-TAGTCTATCATAGTTCATC
1 ACAAAGGCTTATTCTATTATAATTCACC
**
32324042 ACAAAGGCTTATTCCGTTATAATTCACC
1 ACAAAGGCTTATTCTATTATAATTCACC
* ** **
32324070 ACAAAGGCGTATTCTATCGTAATTTTCC
1 ACAAAGGCTTATTCTATTATAATTCACC
* * *
32324098 ACAAAGGTTTATT-TTTTCATAGTTCACC
1 ACAAAGGCTTATTCTATT-ATAATTCACC
32324126 ACAAAGGCTTATTCT
1 ACAAAGGCTTATTCT
32324141 TCCCTAATGT
Statistics
Matches: 74, Mismatches: 22, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
27 10 0.14
28 63 0.85
29 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (28 bp):
ACAAAGGCTTATTCTATTATAATTCACC
Found at i:32334544 original size:29 final size:29
Alignment explanation
Indices: 32334512--32334579 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
32334502 GTAAAACTGA
*
32334512 ACCTTTGTGGTTGTTTTTGTTAAAGGAAT
1 ACCTTTGTGGTTGTTTCTGTTAAAGGAAT
*
32334541 ACCTTTGTGATTGTTTCTGTTAAAGGAAT
1 ACCTTTGTGGTTGTTTCTGTTAAAGGAAT
*
32334570 TCCTTTGTGG
1 ACCTTTGTGG
32334580 AAAATCTCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.19, C:0.10, G:0.24, T:0.47
Consensus pattern (29 bp):
ACCTTTGTGGTTGTTTCTGTTAAAGGAAT
Found at i:32334769 original size:28 final size:28
Alignment explanation
Indices: 32334734--32334873 Score: 118
Period size: 29 Copynumber: 4.9 Consensus size: 28
32334724 GTTACAAGGA
*
32334734 AACCTTTGTGGCGGTCTCTATTAAATGG
1 AACCTTTGTGGCGATCTCTATTAAATGG
* * *
32334762 AACCTTTGTGGTGATCTCTGTTAAAAGG
1 AACCTTTGTGGCGATCTCTATTAAATGG
* * *
32334790 ATGCCTTTGTGGTGATCTCAATTAAATGG
1 A-ACCTTTGTGGCGATCTCTATTAAATGG
* * * *
32334819 AAGCCTTTGTGGCAATATCTGTTAAAAGG
1 AA-CCTTTGTGGCGATCTCTATTAAATGG
* * * *
32334848 ATGCATTTGTGGCTATCTCAATTAAA
1 A-ACCTTTGTGGCGATCTCTATTAAA
32334874 AGAATACCTT
Statistics
Matches: 88, Mismatches: 21, Indels: 5
0.77 0.18 0.04
Matches are distributed among these distances:
28 25 0.28
29 63 0.72
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (28 bp):
AACCTTTGTGGCGATCTCTATTAAATGG
Found at i:32334797 original size:57 final size:58
Alignment explanation
Indices: 32334707--32334873 Score: 210
Period size: 57 Copynumber: 2.9 Consensus size: 58
32334697 TAAAAAGAAC
* * * ** * *
32334707 CCTTTATGGCAATTTCTGTTACAAGGAAACCTTTGTGGCGGTCTCTATTAAATGGAA-
1 CCTTTGTGGCAATATCTGTTAAAAGGATGCCTTTGTGGCGATCTCAATTAAATGGAAG
** * *
32334764 CCTTTGTGGTGATCTCTGTTAAAAGGATGCCTTTGTGGTGATCTCAATTAAATGGAAG
1 CCTTTGTGGCAATATCTGTTAAAAGGATGCCTTTGTGGCGATCTCAATTAAATGGAAG
* *
32334822 CCTTTGTGGCAATATCTGTTAAAAGGATGCATTTGTGGCTATCTCAATTAAA
1 CCTTTGTGGCAATATCTGTTAAAAGGATGCCTTTGTGGCGATCTCAATTAAA
32334874 AGAATACCTT
Statistics
Matches: 93, Mismatches: 16, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
57 47 0.51
58 46 0.49
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (58 bp):
CCTTTGTGGCAATATCTGTTAAAAGGATGCCTTTGTGGCGATCTCAATTAAATGGAAG
Found at i:32334904 original size:58 final size:57
Alignment explanation
Indices: 32334777--32334902 Score: 143
Period size: 58 Copynumber: 2.2 Consensus size: 57
32334767 TTGTGGTGAT
* * * *
32334777 CTCTGTTAAAAGGATGCCTTTGTGGTGATCTCAATTAAATGGAAGCCTTTGTGGCAATA
1 CTCTGTTAAAAGGATGCATTTGTGGTGATCTCAATTAAATAGAAACCTTTGT-G-AAAA
32334836 -TCTGTTAAAAGGATGCATTTGTGGCT-ATCTCAATTAAA-AGAATACCTTATGT-AAAA
1 CTCTGTTAAAAGGATGCATTTGTGG-TGATCTCAATTAAATAGAA-ACCTT-TGTGAAAA
32334892 CTCTGTTAAAA
1 CTCTGTTAAAA
32334903 AGAATGCCTT
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
56 3 0.05
57 13 0.22
58 39 0.66
59 4 0.07
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (57 bp):
CTCTGTTAAAAGGATGCATTTGTGGTGATCTCAATTAAATAGAAACCTTTGTGAAAA
Found at i:32338909 original size:40 final size:39
Alignment explanation
Indices: 32338820--32338953 Score: 148
Period size: 40 Copynumber: 3.4 Consensus size: 39
32338810 GTTTGGATAA
* *
32338820 AAAACGCCACTAAAAATCAAGCATTAGCGGTGCTTTTCT-
1 AAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTT-TG
* ** *
32338859 ATAAATGCCGCTAAAGGTCGAGCATTAGCGGCGCTTTTTGG
1 A-AAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTTT-G
*
32338900 AAAACGCCGCTAAAAAT-AAGCATTAGCGGCGTTTTTTG
1 AAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTTTG
32338938 AAAAGCGCCGC-AAAAA
1 AAAA-CGCCGCTAAAAA
32338954 GCCTAAGCCC
Statistics
Matches: 80, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
38 10 0.12
39 26 0.32
40 43 0.54
41 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (39 bp):
AAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTTTG
Found at i:32339042 original size:41 final size:41
Alignment explanation
Indices: 32338982--32339225 Score: 380
Period size: 41 Copynumber: 6.0 Consensus size: 41
32338972 CGAGTTTTGG
32338982 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
*
32339023 GGGCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* ** *
32339064 GGGCCTTTAACGGCGTTTTTGAAGAAGCGTGGCTACTGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
32339105 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* * * *
32339146 AGACCTTTAGCGGCGTTTTTGAAGAAGCGTCGGTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* * *
32339187 GGGCCTTTAGCAGCGTTTTTTAAAAAGCGCCGCTAATGC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
32339226 CCGTTTTTGA
Statistics
Matches: 182, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 182 1.00
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
Found at i:32339591 original size:14 final size:14
Alignment explanation
Indices: 32339574--32339610 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
32339564 GGGTTTAATA
32339574 TATATGGTTTAAGG
1 TATATGGTTTAAGG
* *
32339588 TATATGATTTAGGG
1 TATATGGTTTAAGG
32339602 TATATGGTT
1 TATATGGTT
32339611 AATTTAGGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (14 bp):
TATATGGTTTAAGG
Found at i:32339840 original size:7 final size:7
Alignment explanation
Indices: 32339828--32339872 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
32339818 GAATAAGGTG
32339828 TAGGGGT
1 TAGGGGT
32339835 TAGGGGT
1 TAGGGGT
32339842 TAGGGGT
1 TAGGGGT
*
32339849 TAGGGAT
1 TAGGGGT
*
32339856 T-TGGGT
1 TAGGGGT
*
32339862 TAGGGTT
1 TAGGGGT
32339869 TAGG
1 TAGG
32339873 ATTTAGGGTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
6 4 0.12
7 28 0.88
ACGTcount: A:0.16, C:0.00, G:0.51, T:0.33
Consensus pattern (7 bp):
TAGGGGT
Found at i:32339863 original size:20 final size:20
Alignment explanation
Indices: 32339838--32339881 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
32339828 TAGGGGTTAG
32339838 GGGTTAGGGGTTAGGGATTT-
1 GGGTTAGGGGTTA-GGATTTA
*
32339858 GGGTTAGGGTTTAGGATTTA
1 GGGTTAGGGGTTAGGATTTA
32339878 GGGT
1 GGGT
32339882 CTAGATTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (20 bp):
GGGTTAGGGGTTAGGATTTA
Found at i:32339947 original size:7 final size:7
Alignment explanation
Indices: 32339924--32339980 Score: 64
Period size: 7 Copynumber: 8.4 Consensus size: 7
32339914 TAAATAAGAT
32339924 TTAGGGG
1 TTAGGGG
**
32339931 TTAGTAG
1 TTAGGGG
32339938 TTAGGGG
1 TTAGGGG
32339945 TTAGGGG
1 TTAGGGG
*
32339952 TTA-AGG
1 TTAGGGG
32339958 TTAGGGG
1 TTAGGGG
*
32339965 TTA-AGG
1 TTAGGGG
32339971 TTAGGGG
1 TTAGGGG
32339978 TTA
1 TTA
32339981 AGAGCTAGTG
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
6 10 0.25
7 30 0.75
ACGTcount: A:0.21, C:0.00, G:0.46, T:0.33
Consensus pattern (7 bp):
TTAGGGG
Found at i:32339960 original size:97 final size:95
Alignment explanation
Indices: 32339779--32339963 Score: 235
Period size: 97 Copynumber: 1.9 Consensus size: 95
32339769 CAGGTTAGAG
* * * * *
32339779 TTTAGGGTTTAGATTAATTTGTGTGTTCTAATTTATATTGAATAAGGTGTAGGGGTTAGGGGTTA
1 TTTAGGGTCTAGATTAATTAGTGTGTTCTAATTTATATTAAATAAGATGTAGGGGTTAGGAGTTA
**
32339844 GGGGTTAGGGATTTGGGTTAGGGTTTAGGA
66 GGGGTTAGGGATTAAGGTTAGGGTTTAGGA
* * * * *
32339874 TTTAGGGTCTAGATTAATTAGTGTTTTTTAGTTTATATATTAAATAAGATTTAGGGGTTAGTAGT
1 TTTAGGGTCTAGATTAATTAGTGTGTTCTA-ATT-TATATTAAATAAGATGTAGGGGTTAGGAGT
*
32339939 TAGGGGTTAGGGGTTAAGGTTAGGG
64 TAGGGGTTAGGGATTAAGGTTAGGG
32339964 GTTAAGGTTA
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
95 26 0.35
96 2 0.03
97 47 0.63
ACGTcount: A:0.24, C:0.01, G:0.33, T:0.42
Consensus pattern (95 bp):
TTTAGGGTCTAGATTAATTAGTGTGTTCTAATTTATATTAAATAAGATGTAGGGGTTAGGAGTTA
GGGGTTAGGGATTAAGGTTAGGGTTTAGGA
Found at i:32339961 original size:13 final size:13
Alignment explanation
Indices: 32339943--32339982 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
32339933 AGTAGTTAGG
32339943 GGTTAGGGGTTAA
1 GGTTAGGGGTTAA
32339956 GGTTAGGGGTTAA
1 GGTTAGGGGTTAA
32339969 GGTTAGGGGTTAA
1 GGTTAGGGGTTAA
32339982 G
1 G
32339983 AGCTAGTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.47, T:0.30
Consensus pattern (13 bp):
GGTTAGGGGTTAA
Found at i:32339980 original size:20 final size:20
Alignment explanation
Indices: 32339924--32339967 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 20
32339914 TAAATAAGAT
32339924 TTAGGGGTTAGTAGTTAGGGG
1 TTAGGGGTTAG-AGTTAGGGG
32339945 TTAGGGGTTA-AGGTTAGGGG
1 TTAGGGGTTAGA-GTTAGGGG
32339965 TTA
1 TTA
32339968 AGGTTAGGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 1 0.05
20 11 0.50
21 10 0.45
ACGTcount: A:0.20, C:0.00, G:0.45, T:0.34
Consensus pattern (20 bp):
TTAGGGGTTAGAGTTAGGGG
Found at i:32346184 original size:18 final size:18
Alignment explanation
Indices: 32346161--32346220 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
32346151 ATGTAATTCT
32346161 AATGTAATTCTAATATAG
1 AATGTAATTCTAATATAG
* * **
32346179 AATGTAA-AC-AATTTTCT
1 AATGTAATTCTAA-TATAG
*
32346196 TATGTAATTCTAATATAG
1 AATGTAATTCTAATATAG
32346214 AATGTAA
1 AATGTAA
32346221 CTTGTTTTAA
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 2 0.07
17 9 0.31
18 16 0.55
19 2 0.07
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (18 bp):
AATGTAATTCTAATATAG
Found at i:32346657 original size:43 final size:43
Alignment explanation
Indices: 32346421--32346648 Score: 375
Period size: 43 Copynumber: 5.3 Consensus size: 43
32346411 AAGTCATGTT
*
32346421 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
*
32346464 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
32346507 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
32346550 TTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAATGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
32346593 TTTAGCGGAGTTTGTGGAAAAAGCACCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
32346636 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
32346649 TTAGAAAAAA
Statistics
Matches: 173, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 173 1.00
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:32351357 original size:13 final size:13
Alignment explanation
Indices: 32351339--32351365 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32351329 TAATTAATGG
32351339 GTTAAAATTTAAA
1 GTTAAAATTTAAA
32351352 GTTAAAATTTAAA
1 GTTAAAATTTAAA
32351365 G
1 G
32351366 ATGATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:32351432 original size:9 final size:9
Alignment explanation
Indices: 32351418--32351501 Score: 93
Period size: 9 Copynumber: 9.6 Consensus size: 9
32351408 AATTTTGGAT
32351418 CATAACTTA
1 CATAACTTA
32351427 CATAACTTA
1 CATAACTTA
32351436 CATAA--TA
1 CATAACTTA
*
32351443 CATAA-ATA
1 CATAACTTA
* * *
32351451 TATATCATA
1 CATAACTTA
32351460 TCATAACTTA
1 -CATAACTTA
*
32351470 CATAACCTA
1 CATAACTTA
32351479 CATAACTTA
1 CATAACTTA
32351488 CATAACTTA
1 CATAACTTA
32351497 CATAA
1 CATAA
32351502 ATATATATCA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
7 7 0.11
8 5 0.08
9 47 0.72
10 6 0.09
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (9 bp):
CATAACTTA
Found at i:32351490 original size:61 final size:59
Alignment explanation
Indices: 32351418--32351534 Score: 182
Period size: 59 Copynumber: 1.9 Consensus size: 59
32351408 AATTTTGGAT
32351418 CATAACTTACATAACTTACATAATACATAAATAT-ATATCATATCATAACTTACATAACCTA
1 CATAACTTACATAACTTACAT-A-A-ATAAATATCATATCATATCATAACTTACATAACCTA
* *
32351479 CATAACTTACATAACTTACATAAATATATATCATATCATATCATAACTTGCATAAC
1 CATAACTTACATAACTTACATAAATAAATATCATATCATATCATAACTTACATAAC
32351535 TTAATTATAC
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
58 7 0.13
59 24 0.45
60 1 0.02
61 21 0.40
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (59 bp):
CATAACTTACATAACTTACATAAATAAATATCATATCATATCATAACTTACATAACCTA
Found at i:32351518 original size:18 final size:18
Alignment explanation
Indices: 32351418--32351523 Score: 67
Period size: 18 Copynumber: 6.0 Consensus size: 18
32351408 AATTTTGGAT
* *
32351418 CATAACTTACATAACTTA
1 CATAACATACATAACATA
32351436 CAT-A-ATACATAA-ATA
1 CATAACATACATAACATA
* * *
32351451 TATATCATATCATAACTTA
1 CATAACATA-CATAACATA
* *
32351470 CATAACCTACATAACTTA
1 CATAACATACATAACATA
*
32351488 CATAACTTACATAA-ATA
1 CATAACATACATAACATA
* * *
32351505 TATATCATATCATATCATA
1 CATAACATA-CATAACATA
32351524 ACTTGCATAA
Statistics
Matches: 68, Mismatches: 14, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
15 4 0.06
16 7 0.10
17 12 0.18
18 34 0.50
19 11 0.16
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (18 bp):
CATAACATACATAACATA
Found at i:32357132 original size:66 final size:65
Alignment explanation
Indices: 32357019--32357143 Score: 153
Period size: 66 Copynumber: 1.9 Consensus size: 65
32357009 CAAATTGCTC
* *
32357019 AACTTAAAGTGGAGGCAGCATCAAGAGAAGCAGAGGCTCAAAGAAAATATGAAGAACTCTAGATA
1 AACTTAAAGTGGAGGCAGCAGCAAGAGAAGCAGAGGC-CAAAAAAAATATGAAGAACTCTAGATA
32357084 A
65 A
* * * * *
32357085 AACTTAAAGTGGAGGCAGTAGCGAGGGAAGTAGAGG-CAAGCAAAAAATATGACGAACTC
1 AACTTAAAGTGGAGGCAGCAGCAAGAGAAGCAGAGGCCAA--AAAAAATATGAAGAACTC
32357144 CAGCTACAAC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
64 3 0.06
66 47 0.94
ACGTcount: A:0.45, C:0.14, G:0.27, T:0.14
Consensus pattern (65 bp):
AACTTAAAGTGGAGGCAGCAGCAAGAGAAGCAGAGGCCAAAAAAAATATGAAGAACTCTAGATAA
Found at i:32357652 original size:41 final size:43
Alignment explanation
Indices: 32357515--32357672 Score: 187
Period size: 43 Copynumber: 3.7 Consensus size: 43
32357505 ATGTTCTTTA
* * *
32357515 GTGGGAAAAGCGCCTCTAAAAGTCATGTTCTTTAACGGCGTTT
1 GTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTT
* * **
32357558 GTGAGGAAAA-CTCCGCTAAAGGTGATGTTCTTTAGCGATGTTT
1 GTG-GGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTT
* * *
32357601 GTGGGGAAAGCGCCGATAAAGGTCATGTT-ATT-GCGGCGTTT
1 GTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTT
*
32357642 GTGGGAAAAGCACCGCTAAAGGTCATGTTCT
1 GTGGGAAAAGCGCCGCTAAAGGTCATGTTCT
32357673 ATAACAGTAT
Statistics
Matches: 94, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
41 33 0.35
42 7 0.07
43 48 0.51
44 6 0.06
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (43 bp):
GTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTT
Found at i:32361905 original size:14 final size:14
Alignment explanation
Indices: 32361886--32361921 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
32361876 TGATTCGACA
32361886 TAACCTTTTATGAT
1 TAACCTTTTATGAT
32361900 TAACCTTTTATGAT
1 TAACCTTTTATGAT
32361914 TAACCTTT
1 TAACCTTT
32361922 CATGCAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.50
Consensus pattern (14 bp):
TAACCTTTTATGAT
Found at i:32366336 original size:18 final size:19
Alignment explanation
Indices: 32366305--32366340 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
32366295 GGTTATATAT
32366305 AAAATATAATATTTAATTG
1 AAAATATAATATTTAATTG
32366324 AAAATAT-ATATTTAATT
1 AAAATATAATATTTAATT
32366341 ATATTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
AAAATATAATATTTAATTG
Found at i:32370020 original size:18 final size:18
Alignment explanation
Indices: 32369999--32370039 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
32369989 AATAAAAAAC
32369999 ATAATAATA-ATATAAATA
1 ATAAT-ATAGATATAAATA
*
32370017 ATAATATAGATATATATA
1 ATAATATAGATATAAATA
32370035 ATAAT
1 ATAAT
32370040 GTTAGCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
ATAATATAGATATAAATA
Found at i:32371699 original size:25 final size:26
Alignment explanation
Indices: 32371670--32371741 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
32371660 TTTAGGCCAG
*
32371670 TTGGGCTAGGGT-ATTGGGCTTAG-GT
1 TTGGGCTAGGTTAATTGGG-TTAGAGT
*
32371695 TTGGGCTAGGTTAATTGGGTTAGATT
1 TTGGGCTAGGTTAATTGGGTTAGAGT
32371721 TTGGGCTAGGTTAATTGGGTT
1 TTGGGCTAGGTTAATTGGGTT
32371742 TGTAAAAGCT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
25 15 0.35
26 28 0.65
ACGTcount: A:0.15, C:0.06, G:0.39, T:0.40
Consensus pattern (26 bp):
TTGGGCTAGGTTAATTGGGTTAGAGT
Found at i:32371712 original size:14 final size:13
Alignment explanation
Indices: 32371670--32371739 Score: 65
Period size: 14 Copynumber: 5.4 Consensus size: 13
32371660 TTTAGGCCAG
*
32371670 TTGGGCTAGGGTA
1 TTGGGCTAGGTTA
32371683 TTGGGCTTAGG-T-
1 TTGGGC-TAGGTTA
32371695 TTGGGCTAGGTTAA
1 TTGGGCTAGGTT-A
* *
32371709 TTGGGTTAGATT-
1 TTGGGCTAGGTTA
32371721 TTGGGCTAGGTTAA
1 TTGGGCTAGGTT-A
32371735 TTGGG
1 TTGGG
32371740 TTTGTAAAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
11 4 0.09
12 17 0.36
13 7 0.15
14 19 0.40
ACGTcount: A:0.16, C:0.06, G:0.40, T:0.39
Consensus pattern (13 bp):
TTGGGCTAGGTTA
Found at i:32372232 original size:44 final size:44
Alignment explanation
Indices: 32372184--32372297 Score: 106
Period size: 44 Copynumber: 2.6 Consensus size: 44
32372174 TCAATCTACT
* *
32372184 CCACTGCAACCTCAGGGAGATAAGATTTGCTTCTT-TGA-TCTGCC
1 CCACTGCAACCTCAGGGAGATAAGACTTG-TT-TTCTCAGTCTGCC
** * * * *
32372228 CCACTGTGACTTCAGGGGGATAAAACTTGTTTTCTCAGTCTGCT
1 CCACTGCAACCTCAGGGAGATAAGACTTGTTTTCTCAGTCTGCC
**
32372272 CCACTGCAACCTCAGAAAGATAAGAC
1 CCACTGCAACCTCAGGGAGATAAGAC
32372298 CTGATGCGAT
Statistics
Matches: 53, Mismatches: 15, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
42 2 0.04
43 4 0.08
44 47 0.89
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (44 bp):
CCACTGCAACCTCAGGGAGATAAGACTTGTTTTCTCAGTCTGCC
Found at i:32372722 original size:129 final size:129
Alignment explanation
Indices: 32372369--32372792 Score: 634
Period size: 129 Copynumber: 3.3 Consensus size: 129
32372359 CTACAACTTC
* * * * *
32372369 AGGGAGATAGGATTTGTAATTTCCCAACCTAATCCACTGCTGACCAGGGATATAGGACTTGTGGC
1 AGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGATCAGGGATATAGGACTTGTGGC
* * *
32372434 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGTCGTCTCTGATCTGCTCCGCTATTTCTT
66 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTATTGCTT
* * *
32372498 AGGGAGACAAGATCCGTAATTT-CCAACCTATTCAACTACTGATCAGGGATATAGGACTTGTGGC
1 AGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGATCAGGGATATAGGACTTGTGGC
* *
32372562 TTAAATCTGCTTCCTTACTCTTGAAGATAAGATCCGCCGTCTTTGATCTGCTCCGCTATTGCTT
66 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTATTGCTT
* ** **
32372626 AGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGGTCAGGGAGCTAGGTTTTGTGGC
1 AGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGATCAGGGATATAGGACTTGTGGC
* * * *
32372691 TTAAACCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT
66 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTATTGCTT
*
32372755 AGGGAGACAAGATCTATAATTTCCCAACCTATTCCACT
1 AGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACT
32372793 ATAACCGAGT
Statistics
Matches: 266, Mismatches: 28, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
128 118 0.44
129 148 0.56
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (129 bp):
AGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGATCAGGGATATAGGACTTGTGGC
TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTATTGCTT
Found at i:32374085 original size:7 final size:7
Alignment explanation
Indices: 32374066--32374122 Score: 73
Period size: 7 Copynumber: 8.0 Consensus size: 7
32374056 TTAGCCTCTC
32374066 CATTTTT
1 CATTTTT
32374073 -ACTTTTT
1 CA-TTTTT
32374080 CATTTTT
1 CATTTTT
32374087 CATTTTT
1 CATTTTT
32374094 CA-TTTT
1 CATTTTT
32374100 CATTTTTT
1 CA-TTTTT
32374108 CATTTTT
1 CATTTTT
32374115 CACTTTTT
1 CA-TTTTT
32374123 TTTGAGAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
6 7 0.16
7 26 0.58
8 12 0.27
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:32374090 original size:21 final size:22
Alignment explanation
Indices: 32374066--32374122 Score: 82
Period size: 21 Copynumber: 2.6 Consensus size: 22
32374056 TTAGCCTCTC
32374066 CATTTTTACTTTTTCA-TTTTT
1 CATTTTTACTTTTTCATTTTTT
*
32374087 CATTTTT-CATTTTCATTTTTT
1 CATTTTTACTTTTTCATTTTTT
32374108 CATTTTTCACTTTTT
1 CATTTTT-ACTTTTT
32374123 TTTGAGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 7 0.23
21 19 0.61
23 5 0.16
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (22 bp):
CATTTTTACTTTTTCATTTTTT
Found at i:32384637 original size:21 final size:21
Alignment explanation
Indices: 32384611--32384662 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
32384601 GCGGTGGCGA
* *
32384611 TGAGATTAGTTACTGTAGCGG
1 TGAGATTAGATACTGTAACGG
*
32384632 TGAGATTGGATACTGTAACGG
1 TGAGATTAGATACTGTAACGG
32384653 TGAGATTAGA
1 TGAGATTAGA
32384663 AACAGCGGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (21 bp):
TGAGATTAGATACTGTAACGG
Found at i:32385443 original size:113 final size:113
Alignment explanation
Indices: 32385245--32385467 Score: 410
Period size: 113 Copynumber: 2.0 Consensus size: 113
32385235 GACTATATCT
*
32385245 CCATAACTATTCCAAATATATGCCGAAACATGTAATTTACGGTAAAACAAGAGTCCAGGTAGCAT
1 CCATAACTATTCCAAATATATGCCGAAACATGTAATTTACGGTAAAACAAGAGTCCAGGAAGCAT
*
32385310 ATATTACAGTTCTTAATACAATATATGATTACTATCAGTATGTTGTGC
66 ATATTACAGTTCTTAATACAACATATGATTACTATCAGTATGTTGTGC
*
32385358 CCATACCTATTCCAAATATATGCCGAAACATGTAATTTACGGTAAAACAAGAGTCCAGGAAGCAT
1 CCATAACTATTCCAAATATATGCCGAAACATGTAATTTACGGTAAAACAAGAGTCCAGGAAGCAT
*
32385423 ATATTATAGTTCTTAATACAACATATGATTACTATCAGTATGTTG
66 ATATTACAGTTCTTAATACAACATATGATTACTATCAGTATGTTG
32385468 CGCCATGATT
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
113 106 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (113 bp):
CCATAACTATTCCAAATATATGCCGAAACATGTAATTTACGGTAAAACAAGAGTCCAGGAAGCAT
ATATTACAGTTCTTAATACAACATATGATTACTATCAGTATGTTGTGC
Found at i:32392458 original size:16 final size:17
Alignment explanation
Indices: 32392412--32392473 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
32392402 TACCCCAATG
* *
32392412 ATTTCATTTAGTTTTAT
1 ATTTTATTTATTTTTAT
32392429 ATTTTATTTATTTTTAT
1 ATTTTATTTATTTTTAT
*
32392446 -TTTTATGTTTTTTTGTATT
1 ATTTTAT-TTATTTT-TA-T
32392465 ATTTTATTT
1 ATTTTATTT
32392474 TATTATGCGT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
16 6 0.16
17 21 0.55
18 2 0.05
19 3 0.08
20 6 0.16
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.74
Consensus pattern (17 bp):
ATTTTATTTATTTTTAT
Found at i:32394627 original size:50 final size:50
Alignment explanation
Indices: 32394567--32394808 Score: 231
Period size: 50 Copynumber: 4.9 Consensus size: 50
32394557 CATTTGGGTA
* * *
32394567 AAGAGATCCCATGTAAGACCATGTCTGGGATATGGTGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* *
32394617 AAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCGTTGGCATCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* ** * * *
32394667 TAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* ** * * * * * *
32394717 GAGAACTCCCATGTAAGACCATATCTGGGATATGTCATTGGTAGTAC-AGGA-
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA--CCGA-GAT
* *
32394768 AACA--TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
32394809 TGTTATTATC
Statistics
Matches: 157, Mismatches: 32, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
49 32 0.20
50 120 0.76
51 3 0.02
52 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:32403204 original size:12 final size:11
Alignment explanation
Indices: 32403187--32403261 Score: 51
Period size: 12 Copynumber: 6.3 Consensus size: 11
32403177 GATAAGAAGA
32403187 AATAATGAAAAT
1 AATAAT-AAAAT
32403199 AATAATAACAAT
1 AATAATAA-AAT
*
32403211 AATAGTACAAAT
1 AATAATA-AAAT
** *
32403223 AATAATTGGATT
1 AATAA-TAAAAT
32403235 AATAAATAATAAT
1 AAT-AATAA-AAT
*
32403248 AATAATAAATT
1 AATAATAAAAT
32403259 AAT
1 AAT
32403262 TAGTAAAAGA
Statistics
Matches: 49, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
11 7 0.14
12 33 0.67
13 9 0.18
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:32403720 original size:19 final size:19
Alignment explanation
Indices: 32403696--32403787 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
32403686 AATCATACCT
32403696 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32403715 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
32403734 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
32403753 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32403772 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
32403788 CCTGAAGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:32405776 original size:14 final size:15
Alignment explanation
Indices: 32405753--32405785 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
32405743 GTCGATGCTT
*
32405753 TTCCAGATAAGG-CC
1 TTCCACATAAGGTCC
32405767 TTCCACATAAGGTCC
1 TTCCACATAAGGTCC
32405782 TTCC
1 TTCC
32405786 TAGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.27
Consensus pattern (15 bp):
TTCCACATAAGGTCC
Found at i:32410921 original size:12 final size:11
Alignment explanation
Indices: 32410904--32410975 Score: 56
Period size: 12 Copynumber: 6.3 Consensus size: 11
32410894 GATAAGAAGA
32410904 AATAATGAAAAT
1 AATAAT-AAAAT
32410916 AATAATAACAAT
1 AATAATAA-AAT
*
32410928 AATAGTACAAAT
1 AATAATA-AAAT
* *
32410940 AATAATAGGATT
1 AATAATA-AAAT
*
32410952 AATAA-ATAAT
1 AATAATAAAAT
*
32410962 AATAATAAATT
1 AATAATAAAAT
32410973 AAT
1 AAT
32410976 TAGTAAAAGC
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
10 7 0.15
11 9 0.19
12 31 0.65
13 1 0.02
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:32411215 original size:19 final size:21
Alignment explanation
Indices: 32411177--32411215 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
32411167 CTTTTTTTAA
*
32411177 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
32411198 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
32411216 ACAGTAAGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:32411438 original size:19 final size:19
Alignment explanation
Indices: 32411414--32411524 Score: 177
Period size: 19 Copynumber: 5.8 Consensus size: 19
32411404 AATCATATCT
32411414 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
32411433 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
32411452 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
32411471 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
*
32411490 TGTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32411509 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
32411525 CCTGAAGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 82 1.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:32411463 original size:38 final size:38
Alignment explanation
Indices: 32411391--32411524 Score: 187
Period size: 38 Copynumber: 3.4 Consensus size: 38
32411381 AAATTAAATC
*
32411391 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTGCATATCATA
32411433 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
* * *
32411471 TCTAAGATTATATATTATATGTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
*
32411509 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
32411525 CCTGAAGATT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
38 67 0.79
41 7 0.08
42 11 0.13
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:32413922 original size:50 final size:51
Alignment explanation
Indices: 32413849--32414043 Score: 196
Period size: 50 Copynumber: 3.8 Consensus size: 51
32413839 CTTGTACTGT
* * * * **
32413849 CAATGTCATATCCCAGATATGGTCTTACATGAGAGTTCTCAT-ATCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCGGTGC
* ** * *
32413899 CCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCA-CTGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCGGTGC
* *
32413949 CAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAA--TC---GGTGC
* *
32414005 CAATGCCATGTCCCAAACATGGTCTTACATGGGATCTCT
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
32414044 TTACCCAAAT
Statistics
Matches: 118, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
50 77 0.65
51 1 0.01
53 1 0.01
56 39 0.33
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (51 bp):
CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCGGTGC
Found at i:32414013 original size:56 final size:50
Alignment explanation
Indices: 32413806--32414043 Score: 187
Period size: 50 Copynumber: 4.7 Consensus size: 50
32413796 ATGTCAAAGG
* ** * * * * *
32413806 CATGTCCTAGACATGGTCTTACATGGGATGTTTCTTGTACTGT--CAATGT
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-CAATGTGCCAATGC
* * * ** *
32413855 CATATCCCAGATATGGTCTTACATGAGAGTTCTCAT--ATCGGTGCCCATGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCAAT--GTGCCAATGC
** * *
32413905 CATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCACTGTGCCAACGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCAATGTGCCAATGC
32413955 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGATGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTC---A--TCAATG-TGCCAATGC
* *
32414011 CATGTCCCAAACATGGTCTTACATGGGATCTCT
1 CATGTCCCAGACATGGTCTTACATGGGACCTCT
32414044 TTACCCAAAT
Statistics
Matches: 150, Mismatches: 27, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
46 1 0.01
48 2 0.01
49 28 0.19
50 73 0.49
52 1 0.01
53 1 0.01
55 5 0.03
56 39 0.26
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (50 bp):
CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCAATGTGCCAATGC
Found at i:32415761 original size:56 final size:56
Alignment explanation
Indices: 32415651--32415761 Score: 186
Period size: 56 Copynumber: 2.0 Consensus size: 56
32415641 GTTGTTCCTA
*
32415651 ACACTACCCACACTCACTACAGATGTAGCCTGAGGTTTTGAGCTCGAATGATGCTG
1 ACACTACCCACACTCACTACAGATGTAGCCTGAGGTTTTGAGCTCGAATAATGCTG
* **
32415707 ACACTACCCACACTCGCTACAGATGTAGCCTGAGGTTTTGAGCTTTAATAATGCT
1 ACACTACCCACACTCACTACAGATGTAGCCTGAGGTTTTGAGCTCGAATAATGCT
32415762 TTCCTTTATC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (56 bp):
ACACTACCCACACTCACTACAGATGTAGCCTGAGGTTTTGAGCTCGAATAATGCTG
Found at i:32417197 original size:25 final size:25
Alignment explanation
Indices: 32417164--32417252 Score: 141
Period size: 25 Copynumber: 3.7 Consensus size: 25
32417154 CCATAAATGC
32417164 TTTCACTTACCATTTACCTAACAAA
1 TTTCACTTACCATTTACCTAACAAA
*
32417189 TTTCTCTTACCATTTA-C---CAAA
1 TTTCACTTACCATTTACCTAACAAA
32417210 TTTCACTTACCATTTACCTAACAAA
1 TTTCACTTACCATTTACCTAACAAA
32417235 TTTCACTTACCATTTACC
1 TTTCACTTACCATTTACC
32417253 AAATTTTCTT
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
21 19 0.33
22 1 0.02
24 1 0.02
25 37 0.64
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.39
Consensus pattern (25 bp):
TTTCACTTACCATTTACCTAACAAA
Found at i:32417216 original size:46 final size:46
Alignment explanation
Indices: 32417164--32417258 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
32417154 CCATAAATGC
*
32417164 TTTCACTTACCATTTACCTAACAAATTTCTCTTACCATTTACCAAA
1 TTTCACTTACCATTTACCTAACAAATTTCACTTACCATTTACCAAA
32417210 TTTCACTTACCATTTACCTAACAAATTTCACTTACCATTTACCAAA
1 TTTCACTTACCATTTACCTAACAAATTTCACTTACCATTTACCAAA
32417256 TTT
1 TTT
32417259 TCTTCAAGCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.40
Consensus pattern (46 bp):
TTTCACTTACCATTTACCTAACAAATTTCACTTACCATTTACCAAA
Found at i:32417221 original size:14 final size:14
Alignment explanation
Indices: 32417202--32417246 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
32417192 CTCTTACCAT
32417202 TTACCAAATTTCAC
1 TTACCAAATTTCAC
32417216 TTACC--ATTT-AC
1 TTACCAAATTTCAC
* *
32417227 CTAACAAATTTCAC
1 TTACCAAATTTCAC
32417241 TTACCA
1 TTACCA
32417247 TTTACCAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
11 5 0.21
12 4 0.17
13 4 0.17
14 11 0.46
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (14 bp):
TTACCAAATTTCAC
Found at i:32418389 original size:16 final size:16
Alignment explanation
Indices: 32418368--32418400 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
32418358 ATTTTGTTGC
*
32418368 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
32418384 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
32418400 T
1 T
32418401 TTTTAATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:32418685 original size:51 final size:49
Alignment explanation
Indices: 32418627--32418766 Score: 192
Period size: 51 Copynumber: 2.8 Consensus size: 49
32418617 CCGTTTCACA
32418627 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACT-TCCGATACA-G
* * *
32418678 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-TTCTGGTACAG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTTCCGATACAG
* **
32418727 TAGTAGCCTGCACACAGTACTACACACATGACCATCACTT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTT
32418767 TCACTTTCAC
Statistics
Matches: 80, Mismatches: 7, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
48 4 0.05
49 32 0.40
50 7 0.09
51 33 0.41
52 4 0.05
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTTCCGATACAG
Found at i:32421620 original size:42 final size:42
Alignment explanation
Indices: 32421540--32421621 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
32421530 CGTTTTCTCT
**
32421540 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
* *
32421582 ATGCCATAG-CCTAGCTATGGTTTTACACAGTA-GCACATAT
1 ATGCCATAGTCC-AACTATGGTCTTACACA-TATGCACATAT
32421622 CACACCGATG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
41 2 0.06
42 30 0.88
43 2 0.06
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (42 bp):
ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
Found at i:32424741 original size:51 final size:51
Alignment explanation
Indices: 32424665--32424855 Score: 235
Period size: 51 Copynumber: 3.8 Consensus size: 51
32424655 TCGGTTGACA
* * *
32424665 TAGTAGCCTGCATATAGTACTACACATGTGACCATCACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGGTACACG
* * * * *
32424716 TAGTAGCCTACACATAGTACTACACACGTGATCA-AAGCTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCA-CTATCCGGTACACG
* * *
32424767 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGGTACACG
*
32424817 TAGTAGCCTGCACATAATACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
32424856 TTCACTTTCA
Statistics
Matches: 117, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
49 4 0.03
50 40 0.34
51 71 0.61
52 1 0.01
53 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGGTACACG
Found at i:32424841 original size:101 final size:102
Alignment explanation
Indices: 32424663--32424847 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
32424653 TATCGGTTGA
* *
32424663 CATAGTAGCCTGCATATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTACA
*
32424728 CATAGTACTACACACGTGATCAAAGCTATCCGGTACG
66 CATAATACTACACACGTGATCAAAGCTATCCGGTACG
* * *
32424765 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAGCCTAC
32424828 ACATAATACTACACACGTGA
65 ACATAATACTACACACGTGA
32424848 CCATCACTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
101 38 0.50
102 34 0.45
103 4 0.05
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTACA
CATAATACTACACACGTGATCAAAGCTATCCGGTACG
Done.