Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 107 of 190
Found at i:32427688 original size:42 final size:42
Alignment explanation
Indices: 32427608--32427689 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
32427598 CGTTTTCTCT
**
32427608 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
*
32427650 ATGCCATAG-CCTAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGTCC-AACTATGGTCTTACACA-TATGCACATAT
32427690 CACACCGATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 2 0.06
42 31 0.89
43 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
Found at i:32430548 original size:51 final size:51
Alignment explanation
Indices: 32430485--32430675 Score: 174
Period size: 51 Copynumber: 3.8 Consensus size: 51
32430475 CCGGTTCACA
* * *
32430485 TAGTAGCCTGCACATATTACTACACATGTGACCATCACTACCCGATGCACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATGCACG
* * * * *
32430536 TAGTCGCCTGCACATAGTACTACACACGTGATCA-AAGCTATCC-AGTGCGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCA-CTATCCGA-TGCACG
* * * * * * * *
32430587 AAGTAGCCTGCACATATTATTACACATGCGACCTATCA-T-TCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGATGCACG
*
32430637 TAGTAGCCTCCACATAGTACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
32430676 TTCACTTTCA
Statistics
Matches: 107, Mismatches: 27, Indels: 13
0.73 0.18 0.09
Matches are distributed among these distances:
49 4 0.04
50 35 0.33
51 66 0.62
52 1 0.01
53 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATGCACG
Found at i:32433527 original size:42 final size:42
Alignment explanation
Indices: 32433447--32433528 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
32433437 CGTTTTCTCT
* **
32433447 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
* *
32433489 ATGCCATAGCCCAGCTATGGTTTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
32433529 CACACCGATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:32433549 original size:47 final size:48
Alignment explanation
Indices: 32433488--32433580 Score: 125
Period size: 47 Copynumber: 2.0 Consensus size: 48
32433478 TTTACATATT
* * *
32433488 GATGCCATAGCCCAGCTATGGTTTTACACAG-TAGCACATATCACACC
1 GATGCCATAGCCCAGATATGGTCTTACACAGAAAGCACATATCACACC
* * *
32433535 GATGCCATATCCCAGATATGGTCTTATACAGAAATCACATATCACA
1 GATGCCATAGCCCAGATATGGTCTTACACAGAAAGCACATATCACA
32433581 TGTTGCCATG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 27 0.69
48 12 0.31
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (48 bp):
GATGCCATAGCCCAGATATGGTCTTACACAGAAAGCACATATCACACC
Found at i:32436635 original size:51 final size:51
Alignment explanation
Indices: 32436577--32436766 Score: 199
Period size: 51 Copynumber: 3.8 Consensus size: 51
32436567 CCGCTTAAAA
* *
32436577 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATTCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATTCGGTACACG
* * * ***
32436628 TAGTAGCCTGCACATAGTACTACACACGTGATCA-AAGCTATCCGGTACGTA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCA-CTATTCGGTACACG
* * * * *
32436679 TAGAAGCCTGCACATAGTACTACACATGCGACATATCA-T-TTTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGAC-CATCACTATTCGGTACACG
* *
32436729 TATTAGCCTGGACATAGTAC-ACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
32436767 TTCAATTTCA
Statistics
Matches: 110, Mismatches: 25, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
48 4 0.04
49 10 0.09
50 24 0.22
51 70 0.64
52 1 0.01
53 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATTCGGTACACG
Found at i:32436744 original size:101 final size:101
Alignment explanation
Indices: 32436576--32436758 Score: 271
Period size: 102 Copynumber: 1.8 Consensus size: 101
32436566 ACCGCTTAAA
* *
32436576 ATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATTCGATACACGTAGTAGCCTGCAC
1 ATAGAAGCCTGCACATAGTACTACACATGCGACCATCACTATTCGATACACGTAGTAGCCTGCAC
32436641 ATAGTACTACACACGTGATCAAAGCTATCCGGTACGT
66 ATAGTAC-ACACACGTGATCAAAGCTATCCGGTACGT
* * * * *
32436678 ATAGAAGCCTGCACATAGTACTACACATGCGACATATCA-T-TTTGGTACACGTATTAGCCTGGA
1 ATAGAAGCCTGCACATAGTACTACACATGCGAC-CATCACTATTCGATACACGTAGTAGCCTGCA
32436741 CATAGTACACACACGTGA
65 CATAGTACACACACGTGA
32436759 CCATCACTTT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
100 10 0.14
101 27 0.37
102 32 0.44
103 4 0.05
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (101 bp):
ATAGAAGCCTGCACATAGTACTACACATGCGACCATCACTATTCGATACACGTAGTAGCCTGCAC
ATAGTACACACACGTGATCAAAGCTATCCGGTACGT
Found at i:32438021 original size:17 final size:17
Alignment explanation
Indices: 32437995--32438033 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
32437985 AAATCTTTAT
*
32437995 GGGCTCGTGTTATTAAA
1 GGGCTAGTGTTATTAAA
32438012 GGGCTAGTGTTATTAAA
1 GGGCTAGTGTTATTAAA
32438029 GGGCT
1 GGGCT
32438034 CTGCTATCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.23, C:0.10, G:0.33, T:0.33
Consensus pattern (17 bp):
GGGCTAGTGTTATTAAA
Found at i:32441565 original size:19 final size:18
Alignment explanation
Indices: 32441523--32441565 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
32441513 AACGAGCTTG
32441523 TTTTTTAGTATTTTTATA
1 TTTTTTAGTATTTTTATA
32441541 TGTTTTTAGTTCATTTTT-TA
1 T-TTTTTAG-T-ATTTTTATA
32441561 TTTTT
1 TTTTT
32441566 ATTGTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.05
19 11 0.50
20 4 0.18
21 6 0.27
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.74
Consensus pattern (18 bp):
TTTTTTAGTATTTTTATA
Found at i:32443411 original size:20 final size:20
Alignment explanation
Indices: 32443386--32443430 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
32443376 TTGTACGGGT
32443386 TTGCACTTTGGTGCCTCTGA
1 TTGCACTTTGGTGCCTCTGA
*
32443406 TTGCACTTTGGTGCCTTTGA
1 TTGCACTTTGGTGCCTCTGA
32443426 TTGCA
1 TTGCA
32443431 ATTCTGTGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.11, C:0.22, G:0.24, T:0.42
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTGA
Found at i:32443439 original size:20 final size:20
Alignment explanation
Indices: 32443386--32443444 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
32443376 TTGTACGGGT
* *
32443386 TTGCACTTTGGTGCCTCTGA
1 TTGCAATTTGGTGCCTTTGA
*
32443406 TTGCACTTTGGTGCCTTTGA
1 TTGCAATTTGGTGCCTTTGA
32443426 TTGCAATTCT-GTGCCTTTG
1 TTGCAATT-TGGTGCCTTTG
32443445 CTAGCATTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
20 35 0.97
21 1 0.03
ACGTcount: A:0.10, C:0.22, G:0.24, T:0.44
Consensus pattern (20 bp):
TTGCAATTTGGTGCCTTTGA
Found at i:32446034 original size:16 final size:16
Alignment explanation
Indices: 32446013--32446043 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32446003 GTTAATTGGT
*
32446013 TAATTTTTAGTTTAAA
1 TAATTTTTAGGTTAAA
32446029 TAATTTTTAGGTTAA
1 TAATTTTTAGGTTAA
32446044 TTTAATTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (16 bp):
TAATTTTTAGGTTAAA
Found at i:32446049 original size:17 final size:16
Alignment explanation
Indices: 32446012--32446050 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
32446002 TGTTAATTGG
*
32446012 TTAATTTTTAGTTTAA
1 TTAATTTTTAGGTTAA
*
32446028 ATAATTTTTAGGTTAA
1 TTAATTTTTAGGTTAA
32446044 TTTAATT
1 -TTAATT
32446051 CATTGATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (16 bp):
TTAATTTTTAGGTTAA
Found at i:32450699 original size:18 final size:18
Alignment explanation
Indices: 32450663--32450699 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32450653 CTTCTTAAGA
*
32450663 TGAACAATGTCCTCTTTG
1 TGAACAATGTCCTCATTG
*
32450681 TGAACAATGTTCTCATTG
1 TGAACAATGTCCTCATTG
32450699 T
1 T
32450700 TAAAAGTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (18 bp):
TGAACAATGTCCTCATTG
Found at i:32451870 original size:29 final size:29
Alignment explanation
Indices: 32451828--32451884 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
32451818 ATTGCTCATC
32451828 AAGGAAGAATATTCGTCGTTTTCAAAATT
1 AAGGAAGAATATTCGTCGTTTTCAAAATT
32451857 AAGGAAGAATATTCGTCGTTTTCAAAAT
1 AAGGAAGAATATTCGTCGTTTTCAAAAT
32451885 CAAGTAATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.33
Consensus pattern (29 bp):
AAGGAAGAATATTCGTCGTTTTCAAAATT
Found at i:32462285 original size:15 final size:15
Alignment explanation
Indices: 32462265--32462294 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32462255 TTGTGCTATG
32462265 GTCTGATTGACTTAA
1 GTCTGATTGACTTAA
32462280 GTCTGATTGACTTAA
1 GTCTGATTGACTTAA
32462295 CTGTGAACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (15 bp):
GTCTGATTGACTTAA
Found at i:32463571 original size:6 final size:6
Alignment explanation
Indices: 32463543--32463582 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
32463533 TATTTAACCC
*
32463543 AAATT- AAATT- AAATT- AGATTA AAATTA AAATTA AAATTA A
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA A
32463583 TTATGTTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 14 0.44
6 18 0.56
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (6 bp):
AAATTA
Found at i:32481624 original size:15 final size:15
Alignment explanation
Indices: 32481604--32481660 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
32481594 GAAATCCTTG
32481604 TTATAATTATTGTAA
1 TTATAATTATTGTAA
*
32481619 TTATAATTTATGATCGAATA
1 TTATAA-TTAT--T-GTA-A
32481639 TTATAATTATTGTAA
1 TTATAATTATTGTAA
*
32481654 TTGTAAT
1 TTATAAT
32481661 ATTTTGGTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
15 13 0.38
16 6 0.18
17 1 0.03
18 1 0.03
19 6 0.18
20 7 0.21
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.51
Consensus pattern (15 bp):
TTATAATTATTGTAA
Found at i:32490385 original size:36 final size:37
Alignment explanation
Indices: 32490308--32490391 Score: 89
Period size: 41 Copynumber: 2.2 Consensus size: 37
32490298 CACAATTCCG
*
32490308 GTAGTTTGTCTGCAATTACTGGAGGCTTGTCCATAATACTA
1 GTAGTTTATCTGCAATTACTGGAGGCTTGTCC---A-ACTA
* *
32490349 GTAGTTTATCTGCAATTACTTGTGGCTTGTCC-ACTA
1 GTAGTTTATCTGCAATTACTGGAGGCTTGTCCAACTA
*
32490385 GTTGTTT
1 GTAGTTT
32490392 GTTATTGGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
36 10 0.26
41 29 0.74
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (37 bp):
GTAGTTTATCTGCAATTACTGGAGGCTTGTCCAACTA
Found at i:32492336 original size:5 final size:5
Alignment explanation
Indices: 32492326--32492351 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
32492316 ATAGATACCA
32492326 AATTT AATTT AATTT AATTT AATTT A
1 AATTT AATTT AATTT AATTT AATTT A
32492352 TTAATTTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
AATTT
Found at i:32493785 original size:26 final size:25
Alignment explanation
Indices: 32493746--32493804 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 25
32493736 CAAAATAACA
32493746 TTTCCTTTGAACACTTACCATTTCG
1 TTTCCTTTGAACACTTACCATTTCG
*
32493771 TTTCCTTCTGAACACTTACCATTTTG
1 TTTCCTT-TGAACACTTACCATTTCG
32493797 TTTCCTTT
1 TTTCCTTT
32493805 TCATACCCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 8 0.25
26 24 0.75
ACGTcount: A:0.17, C:0.27, G:0.07, T:0.49
Consensus pattern (25 bp):
TTTCCTTTGAACACTTACCATTTCG
Found at i:32498999 original size:53 final size:54
Alignment explanation
Indices: 32498883--32499006 Score: 126
Period size: 53 Copynumber: 2.3 Consensus size: 54
32498873 GTGTACTAAG
* **** *
32498883 TCAATGAGTTACACGGCCTAGCACACGGCCTACGACATGGCCATCTGTTGTAAG
1 TCAATGAGTTACACAGCCTAGCACACGGCCTACGACATGGCCATCTGACCCAAC
* * * *
32498937 TCAGA-GAGTTACACAGTCT-GCACACGGCCTGCGACATGGCCGTGTGACCCAAC
1 TCA-ATGAGTTACACAGCCTAGCACACGGCCTACGACATGGCCATCTGACCCAAC
*
32498990 TCAATGAGTTATACAGC
1 TCAATGAGTTACACAGC
32499007 TAGAGATGCG
Statistics
Matches: 56, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
52 1 0.02
53 39 0.70
54 15 0.27
55 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (54 bp):
TCAATGAGTTACACAGCCTAGCACACGGCCTACGACATGGCCATCTGACCCAAC
Found at i:32504382 original size:19 final size:21
Alignment explanation
Indices: 32504357--32504402 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
32504347 TTAAATTTTA
32504357 ATTTTTGG-ATGTT-TTTATTT
1 ATTTTTGGAAT-TTGTTTATTT
32504377 -TTTTTGGAATTTGTTTATTT
1 ATTTTTGGAATTTGTTTATTT
32504397 ATTTTT
1 ATTTTT
32504403 TGCTTTAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 9 0.39
20 9 0.39
21 5 0.22
ACGTcount: A:0.15, C:0.00, G:0.13, T:0.72
Consensus pattern (21 bp):
ATTTTTGGAATTTGTTTATTT
Found at i:32506213 original size:25 final size:25
Alignment explanation
Indices: 32506163--32506221 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
32506153 ATGCACATGC
*
32506163 ATGCTCATACGAGCTATGAATCGGT
1 ATGCTCATACGAGCTATAAATCGGT
* *
32506188 ATGCTC-TCACGAGCTGTAAATTGGT
1 ATGCTCAT-ACGAGCTATAAATCGGT
*
32506213 AAGCTCATA
1 ATGCTCATA
32506222 TGAGATAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 1 0.04
25 26 0.93
26 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (25 bp):
ATGCTCATACGAGCTATAAATCGGT
Found at i:32506236 original size:24 final size:24
Alignment explanation
Indices: 32506205--32506273 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 24
32506195 CACGAGCTGT
32506205 AAATTGGTAAGCTCATATGAGATA
1 AAATTGGTAAGCTCATATGAGATA
* *
32506229 AAATTGGTAAGCTC-TCAAT-AGTTG
1 AAATTGGTAAGCTCAT--ATGAGATA
32506253 AAATTGGTAAGCTCATATGAG
1 AAATTGGTAAGCTCATATGAG
32506274 CTGTGGTGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
23 3 0.08
24 33 0.85
25 3 0.08
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.30
Consensus pattern (24 bp):
AAATTGGTAAGCTCATATGAGATA
Found at i:32507430 original size:27 final size:26
Alignment explanation
Indices: 32507400--32507464 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
32507390 ATATATAATT
32507400 ATTATATAATAATTAAATTTTACTTAA
1 ATTATATAATAATTAAATTTTACTT-A
* * *
32507427 ATTAT-TAACATGTTGAATTTTACTTA
1 ATTATATAATA-ATTAAATTTTACTTA
*
32507453 ATTTTATAATAA
1 ATTATATAATAA
32507465 ATTTAGATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
26 9 0.30
27 21 0.70
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (26 bp):
ATTATATAATAATTAAATTTTACTTA
Found at i:32508338 original size:20 final size:18
Alignment explanation
Indices: 32508305--32508341 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
32508295 TGTGATTTTG
32508305 ATATGATTAATTTAATTA
1 ATATGATTAATTTAATTA
32508323 ATATGAATTGAATTTAATT
1 ATATG-ATT-AATTTAATT
32508342 CGTGTTAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 3 0.18
20 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (18 bp):
ATATGATTAATTTAATTA
Found at i:32512854 original size:16 final size:16
Alignment explanation
Indices: 32512833--32512863 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32512823 AATTGGTTGG
*
32512833 TTTTTAGTTTAATTAA
1 TTTTTAGGTTAATTAA
32512849 TTTTTAGGTTAATTA
1 TTTTTAGGTTAATTA
32512864 GATTAATTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (16 bp):
TTTTTAGGTTAATTAA
Found at i:32517127 original size:50 final size:50
Alignment explanation
Indices: 32517047--32517339 Score: 442
Period size: 50 Copynumber: 5.8 Consensus size: 50
32517037 ATTTGGATAA
* *
32517047 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
**
32517097 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGAATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
32517147 AGAGGTCCCATGTAAGACCATGTATAGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
32517197 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
32517247 AGAGGTCCCCCGTAAGACCATGCCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** *
32517297 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
32517340 TGTTATTATC
Statistics
Matches: 220, Mismatches: 22, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
50 187 0.85
51 33 0.15
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:32535286 original size:50 final size:49
Alignment explanation
Indices: 32535167--32535339 Score: 145
Period size: 50 Copynumber: 3.5 Consensus size: 49
32535157 AAGCCAAAGT
* * *
32535167 CATGTCTCAGACATGGTCTTACATGGGATGTT-TCCTGTAC-TGCCAAT-C
1 CATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGTGCCAATGC
* * *
32535215 TCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGC
1 -CATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATC-GTGCCAATGC
** ** * * *
32535266 CATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCCGTACCAACGC
1 CATGTCCCAGACATGGTCTTACATGGGAGTTCTCATAT-CGTGCCAATGC
* *
32535316 CATGTCTCAGACATGGTCCTACAT
1 CATGTCCCAGACATGGTCTTACAT
32535340 AGGACCTCTC
Statistics
Matches: 99, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
48 4 0.04
49 29 0.29
50 64 0.65
51 2 0.02
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (49 bp):
CATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGTGCCAATGC
Found at i:32537442 original size:6 final size:6
Alignment explanation
Indices: 32537431--32537492 Score: 106
Period size: 6 Copynumber: 10.2 Consensus size: 6
32537421 CATTTTTAAG
*
32537431 TCATTT TCATTTT TCTTTT TCATTT TCATTT TCATTT TCATTT TCATTT
1 TCATTT TCA-TTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT
32537480 TCATTT TCATTT T
1 TCATTT TCATTT T
32537493 GGAGAAAACC
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
6 48 0.91
7 5 0.09
ACGTcount: A:0.15, C:0.16, G:0.00, T:0.69
Consensus pattern (6 bp):
TCATTT
Found at i:32540868 original size:13 final size:13
Alignment explanation
Indices: 32540850--32540874 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32540840 AAATTATCCA
32540850 ACCCAACCCAATT
1 ACCCAACCCAATT
32540863 ACCCAACCCAAT
1 ACCCAACCCAAT
32540875 AAAACTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:32540912 original size:38 final size:39
Alignment explanation
Indices: 32540855--32540932 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
32540845 ATCCAACCCA
*
32540855 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
*
32540894 ACCCATTTA-CCAACCCAATAAAAATAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
32540932 A
1 A
32540933 ACTCTTAAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 29 0.78
39 8 0.22
ACGTcount: A:0.50, C:0.28, G:0.03, T:0.19
Consensus pattern (39 bp):
ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
Found at i:32541158 original size:9 final size:8
Alignment explanation
Indices: 32541138--32541186 Score: 53
Period size: 9 Copynumber: 5.5 Consensus size: 8
32541128 GTAGTGATTC
32541138 AATTCGGAT
1 AATTCGG-T
32541147 AATTCAGGT
1 AATTC-GGT
32541156 AATTCGGGT
1 AATTC-GGT
32541165 AATTCGGTT
1 AATTCGG-T
32541174 AATTCGGTT
1 AATTCGG-T
32541183 AATT
1 AATT
32541187 TTTAACCAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
8 2 0.05
9 33 0.89
10 2 0.05
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (8 bp):
AATTCGGT
Found at i:32541161 original size:18 final size:18
Alignment explanation
Indices: 32541138--32541186 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
32541128 GTAGTGATTC
32541138 AATTCGGATAATTCAGG-T
1 AATTCGGATAATTC-GGTT
*
32541156 AATTCGGGTAATTCGGTT
1 AATTCGGATAATTCGGTT
*
32541174 AATTCGGTTAATT
1 AATTCGGATAATT
32541187 TTTAACCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 2 0.07
18 26 0.93
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (18 bp):
AATTCGGATAATTCGGTT
Found at i:32550846 original size:17 final size:17
Alignment explanation
Indices: 32550826--32550860 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32550816 CAAAACATAT
32550826 ATGTATATAA-AATATAA
1 ATGTATA-AAGAATATAA
32550843 ATGTATAAAGAATATAA
1 ATGTATAAAGAATATAA
32550860 A
1 A
32550861 AAATTAGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (17 bp):
ATGTATAAAGAATATAA
Found at i:32551008 original size:2 final size:2
Alignment explanation
Indices: 32551003--32551032 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
32550993 AAAAAAATGC
32551003 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32551033 AGAAAAATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32551078 original size:12 final size:12
Alignment explanation
Indices: 32551061--32551102 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
32551051 GAATACAAAG
*
32551061 ATAATGATACTA
1 ATAATGATAATA
32551073 ATAATGATAATA
1 ATAATGATAATA
32551085 TATAAT-ATAATA
1 -ATAATGATAATA
32551097 ATAATG
1 ATAATG
32551103 TTTCTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 5 0.19
12 17 0.63
13 5 0.19
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (12 bp):
ATAATGATAATA
Found at i:32556483 original size:22 final size:22
Alignment explanation
Indices: 32556454--32556529 Score: 118
Period size: 22 Copynumber: 3.5 Consensus size: 22
32556444 CTTCCTAATA
32556454 AAGC-CTCATGGCTAACGTACT
1 AAGCTCTCATGGCTAACGTACT
32556475 AAGCTCTCATGGCTAACGTACT
1 AAGCTCTCATGGCTAACGTACT
** *
32556497 AAGCTCTCATGTTTCACGTACT
1 AAGCTCTCATGGCTAACGTACT
32556519 AAGCTCTCATG
1 AAGCTCTCATG
32556530 TTTGAACAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
21 4 0.08
22 47 0.92
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (22 bp):
AAGCTCTCATGGCTAACGTACT
Found at i:32558570 original size:11 final size:11
Alignment explanation
Indices: 32558556--32558589 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
32558546 AGTATAAAAT
32558556 AATAATAATTG
1 AATAATAATTG
*
32558567 AATAATAATTA
1 AATAATAATTG
32558578 AATAA-AATTG
1 AATAATAATTG
32558588 AA
1 AA
32558590 ATTTTAGGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 6 0.29
11 15 0.71
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (11 bp):
AATAATAATTG
Found at i:32562729 original size:60 final size:60
Alignment explanation
Indices: 32562656--32562776 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
32562646 AGATTAAATC
32562656 CCCTTTTATTAGCTTCTAGCAAAGCTAAGTATTCATCCTCCTCTTTATCATTTGGAGGGT
1 CCCTTTTATTAGCTTCTAGCAAAGCTAAGTATTCATCCTCCTCTTTATCATTTGGAGGGT
32562716 CCCTTTTATTAGCTTCTAGCAAAGCTAAGTATTCATCCTCCTCTTTATCATTTGGAGGGT
1 CCCTTTTATTAGCTTCTAGCAAAGCTAAGTATTCATCCTCCTCTTTATCATTTGGAGGGT
32562776 C
1 C
32562777 TGATGTCAAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (60 bp):
CCCTTTTATTAGCTTCTAGCAAAGCTAAGTATTCATCCTCCTCTTTATCATTTGGAGGGT
Found at i:32565163 original size:15 final size:15
Alignment explanation
Indices: 32565143--32565171 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32565133 TTAAAATTGA
32565143 ACAGAAAAATTAATC
1 ACAGAAAAATTAATC
32565158 ACAGAAAAATTAAT
1 ACAGAAAAATTAAT
32565172 TAAGTTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.21
Consensus pattern (15 bp):
ACAGAAAAATTAATC
Found at i:32574445 original size:9 final size:9
Alignment explanation
Indices: 32574427--32574505 Score: 81
Period size: 9 Copynumber: 8.8 Consensus size: 9
32574417 ACAACCAAAA
32574427 TGAGAGAGT
1 TGAGAGAGT
*
32574436 TGAGAAAGT
1 TGAGAGAGT
*
32574445 TGAGA-AAT
1 TGAGAGAGT
* *
32574453 T-TGAGACT
1 TGAGAGAGT
*
32574461 TGAGAGGGTT
1 TGAGAGAG-T
32574471 TGAGAGAGT
1 TGAGAGAGT
32574480 TGAGAGAGTT
1 TGAGAGAG-T
32574490 TGAGAGAGT
1 TGAGAGAGT
32574499 TGAGAGA
1 TGAGAGA
32574506 AGGATGTGAA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
7 2 0.03
8 6 0.10
9 33 0.57
10 17 0.29
ACGTcount: A:0.34, C:0.01, G:0.39, T:0.25
Consensus pattern (9 bp):
TGAGAGAGT
Found at i:32574482 original size:19 final size:19
Alignment explanation
Indices: 32574427--32574505 Score: 94
Period size: 19 Copynumber: 4.4 Consensus size: 19
32574417 ACAACCAAAA
*
32574427 TGAGAGAG-TTGAGAAAGT
1 TGAGAGAGTTTGAGAGAGT
* *
32574445 TGAGA-AATTT--GAGACT
1 TGAGAGAGTTTGAGAGAGT
*
32574461 TGAGAGGGTTTGAGAGAGT
1 TGAGAGAGTTTGAGAGAGT
32574480 TGAGAGAGTTTGAGAGAGT
1 TGAGAGAGTTTGAGAGAGT
32574499 TGAGAGA
1 TGAGAGA
32574506 AGGATGTGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
16 9 0.18
17 4 0.08
18 7 0.14
19 30 0.60
ACGTcount: A:0.34, C:0.01, G:0.39, T:0.25
Consensus pattern (19 bp):
TGAGAGAGTTTGAGAGAGT
Found at i:32574941 original size:21 final size:22
Alignment explanation
Indices: 32574915--32574960 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
32574905 AAATAAAAAT
*
32574915 TTTATATTTAA-AT-ATTATTAA
1 TTTATATTGAATATAATTA-TAA
32574936 TTTATATTGAATATAATTATAA
1 TTTATATTGAATATAATTATAA
32574958 TTT
1 TTT
32574961 TTTAAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 10 0.45
22 8 0.36
23 4 0.18
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTATATTGAATATAATTATAA
Found at i:32574954 original size:20 final size:21
Alignment explanation
Indices: 32574895--32574954 Score: 56
Period size: 20 Copynumber: 3.0 Consensus size: 21
32574885 GATATTTTGT
32574895 TTTATATATTAAATA-AA--AA
1 TTTATAT-TTAAATATAATTAA
*
32574914 TTTTATATTTAAATATTATTAA
1 -TTTATATTTAAATATAATTAA
*
32574936 TTTATA-TTGAATATAATTA
1 TTTATATTTAAATATAATTA
32574955 TAATTTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 7 0.21
20 19 0.56
21 6 0.18
22 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
TTTATATTTAAATATAATTAA
Found at i:32574982 original size:28 final size:29
Alignment explanation
Indices: 32574951--32575010 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
32574941 ATTGAATATA
* *
32574951 ATTATAATTTT-TTAAAATA-TTTATAGAT
1 ATTA-AATTTTATTAAAAAATTTTATAAAT
*
32574979 ATTAATTTTTATTAAAAAATTTTATAAAT
1 ATTAAATTTTATTAAAAAATTTTATAAAT
32575008 ATT
1 ATT
32575011 TCTATTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 5 0.19
28 11 0.41
29 11 0.41
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (29 bp):
ATTAAATTTTATTAAAAAATTTTATAAAT
Found at i:32582081 original size:40 final size:40
Alignment explanation
Indices: 32582004--32582093 Score: 101
Period size: 40 Copynumber: 2.2 Consensus size: 40
32581994 GCTTTACGGA
* * *
32582004 CATTAGCGGTGCTTTTTAACAAACGCCGCAATGTATCGAG
1 CATTAGCGGCGCTTATTAACAAACGCCGCAATATATCGAG
* *
32582044 CATTAGCGGCGCTTATTGAGAAACGCCGCTAA-ATATCGAG
1 CATTAGCGGCGCTTATTAACAAACGCCGC-AATATATCGAG
* *
32582084 TAATAGCGGC
1 CATTAGCGGC
32582094 ACTTTCTATA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 40 0.95
41 2 0.05
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (40 bp):
CATTAGCGGCGCTTATTAACAAACGCCGCAATATATCGAG
Found at i:32582169 original size:196 final size:194
Alignment explanation
Indices: 32581886--32582326 Score: 480
Period size: 196 Copynumber: 2.2 Consensus size: 194
32581876 GCAATAGGTA
* * * * * *
32581886 AGCAATAACGGCACTTTTCTTAAAATGCTGCAAAAGATCAAGCATTAGCGGCGCTTTCCTAAAAG
1 AGCAATAGCGGCAC-TTTCTTAAAATGCCGCTAAAGGTCAAGCATTAGCAGCGCTTT-CTAAAAA
* * *
32581951 CGCCGCAAAAAAGTTAAGCAAAAC-AGCGTCATTTT-TCTGTTGAGCTTTAC-GGACATTAGCGG
64 CGCCGCAAAAAAGTTAAGCAAAACGA-CCTCGTTTTCT-TGTTGAGCTTTACTAGA-ATTAGCGG
* * *
32582013 TGCTTTTTAACAAACGCC-GCAAT-GTATCGAGCATTAGCGGCGCTTATTGAGAAACGCCGCTAA
126 CGCTTTTTAAAAAAC-CCTGCAATAG-ATCGAGCATTAGCAGCGCTTATTGAGAAACGCCGCTAA
*
32582076 ATATCG
189 AGATCG
* *
32582082 AGTAATAGCGGCACTTTCTATAAAATGCCGCTAAAGGTCAGGCATTAGCAGCGCGTTT-TGAAAA
1 AGCAATAGCGGCACTTTCT-TAAAATGCCGCTAAAGGTCAAGCATTAGCAGCGC-TTTCT-AAAA
* * * * * *
32582146 ATGCTGCAAAAAATTTGAGCAAAACGACCTCGTTTTCTTTTTGCGCTTTACTAGAATTAGCGGCG
63 ACGCCGCAAAAAAGTTAAGCAAAACGACCTCGTTTTCTTGTTGAGCTTTACTAGAATTAGCGGCG
* * *
32582211 GTTTTTAAAAAACCCTGCAATAGATTGAGCATTAGCAGCGCTTGTTGAGAAACGCCGCTAAAGAT
128 CTTTTTAAAAAACCCTGCAATAGATCGAGCATTAGCAGCGCTTATTGAGAAACGCCGCTAAAGAT
32582276 CG
193 CG
* * * * *
32582278 AGCATTAGCGGCGCTTTTTGTAAAACGCCGCTATAGGTCAAGCATTAGC
1 AGCAATAGCGGCACTTTCT-TAAAATGCCGCTAAAGGTCAAGCATTAGC
32582327 TTAAGCAAAA
Statistics
Matches: 205, Mismatches: 32, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
195 8 0.04
196 189 0.92
197 8 0.04
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (194 bp):
AGCAATAGCGGCACTTTCTTAAAATGCCGCTAAAGGTCAAGCATTAGCAGCGCTTTCTAAAAACG
CCGCAAAAAAGTTAAGCAAAACGACCTCGTTTTCTTGTTGAGCTTTACTAGAATTAGCGGCGCTT
TTTAAAAAACCCTGCAATAGATCGAGCATTAGCAGCGCTTATTGAGAAACGCCGCTAAAGATCG
Found at i:32582281 original size:40 final size:40
Alignment explanation
Indices: 32582232--32582326 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
32582222 ACCCTGCAAT
*
32582232 AGATTGAGCATTAGCAGCGCTTGTTG-AGAAACGCCGCTAA
1 AGATCGAGCATTAGCAGCGCTTGTTGTA-AAACGCCGCTAA
* * *
32582272 AGATCGAGCATTAGCGGCGCTTTTTGTAAAACGCCGCTAT
1 AGATCGAGCATTAGCAGCGCTTGTTGTAAAACGCCGCTAA
* *
32582312 AGGTCAAGCATTAGC
1 AGATCGAGCATTAGC
32582327 TTAAGCAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
40 47 0.98
41 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (40 bp):
AGATCGAGCATTAGCAGCGCTTGTTGTAAAACGCCGCTAA
Found at i:32582506 original size:15 final size:14
Alignment explanation
Indices: 32582482--32582522 Score: 64
Period size: 15 Copynumber: 2.8 Consensus size: 14
32582472 CATTAGAGGC
32582482 ATTAGTGGTTTAGGG
1 ATTA-TGGTTTAGGG
32582497 ATTATGGGTTTAGGG
1 ATTAT-GGTTTAGGG
32582512 ATTATGGTTTA
1 ATTATGGTTTA
32582523 TTGTTTATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.28
15 18 0.72
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (14 bp):
ATTATGGTTTAGGG
Found at i:32582587 original size:57 final size:57
Alignment explanation
Indices: 32582489--32582596 Score: 132
Period size: 57 Copynumber: 1.9 Consensus size: 57
32582479 GGCATTAGTG
* * *
32582489 GTTTAGGGATTATGGGTTTAGGGATTATGGTTTATTGTTTATTG-TTTAAGGGTTGGA
1 GTTTAGGGATTAGGGGTTTAAGGATTATAGTTTATTGTTTA-TGATTTAAGGGTTGGA
*
32582546 GTTTAAGGG-TTAGGGGTTTAAGGTTTATAGTTTA-TGTTTTATGATTTAAGG
1 GTTT-AGGGATTAGGGGTTTAAGGATTATAGTTTATTG-TTTATGATTTAAGG
32582597 TTTAGAGGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
56 4 0.09
57 36 0.82
58 4 0.09
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.47
Consensus pattern (57 bp):
GTTTAGGGATTAGGGGTTTAAGGATTATAGTTTATTGTTTATGATTTAAGGGTTGGA
Found at i:32582724 original size:7 final size:7
Alignment explanation
Indices: 32582483--32582732 Score: 57
Period size: 7 Copynumber: 34.7 Consensus size: 7
32582473 ATTAGAGGCA
32582483 TTAGTGGT
1 TTAG-GGT
*
32582491 TTAGGGA
1 TTAGGGT
32582498 TTATGGGT
1 TTA-GGGT
*
32582506 TTAGGGA
1 TTAGGGT
*
32582513 TTATGGT
1 TTAGGGT
**
32582520 TTATTGT
1 TTAGGGT
**
32582527 TTATTGT
1 TTAGGGT
32582534 TTAAGGG-
1 TT-AGGGT
32582541 TT-GGAGT
1 TTAGG-GT
32582548 TTAAGGG-
1 TT-AGGGT
32582555 TTAGGGGT
1 TTA-GGGT
*
32582563 TTAAGGT
1 TTAGGGT
**
32582570 TTATAGT
1 TTAGGGT
* *
32582577 TTATGTT
1 TTAGGGT
* *
32582584 TTATGAT
1 TTAGGGT
*
32582591 TTAAGGT
1 TTAGGGT
32582598 TTAGAGG-
1 TTAG-GGT
*
32582605 ATAGAGGT
1 TTAG-GGT
* *
32582613 TAAAGGT
1 TTAGGGT
*
32582620 TTAGGGA
1 TTAGGGT
32582627 TTATGCGGT
1 TTA-G-GGT
32582636 TTATGGG-
1 TTA-GGGT
*
32582643 TTATGGT
1 TTAGGGT
32582650 TTAAGGG-
1 TT-AGGGT
*
32582657 TTGGGGT
1 TTAGGGT
*
32582664 TTAAGGT
1 TTAGGGT
32582671 TTA-GGT
1 TTAGGGT
32582677 GTTAGGTGT
1 -TTAGG-GT
*
32582686 TAAGGG-
1 TTAGGGT
*
32582692 TTAGGGGC
1 TTA-GGGT
*
32582700 TTAAGGT
1 TTAGGGT
**
32582707 TTATAGT
1 TTAGGGT
32582714 TTAGGGT
1 TTAGGGT
*
32582721 TTAGGAT
1 TTAGGGT
32582728 TTAGG
1 TTAGG
32582733 AGATACATGT
Statistics
Matches: 183, Mismatches: 39, Indels: 41
0.70 0.15 0.16
Matches are distributed among these distances:
5 2 0.01
6 12 0.07
7 125 0.68
8 33 0.18
9 11 0.06
ACGTcount: A:0.22, C:0.01, G:0.35, T:0.43
Consensus pattern (7 bp):
TTAGGGT
Found at i:32582800 original size:21 final size:21
Alignment explanation
Indices: 32582745--32582828 Score: 57
Period size: 21 Copynumber: 4.0 Consensus size: 21
32582735 ATACATGTTA
* * * *
32582745 GGGGTTTAGGGATTATGGTTT
1 GGGGTTTAAGGTTTAAGGGTT
*
32582766 GTGGTTTATA-GTTTAAGGGTT
1 GGGGTTTA-AGGTTTAAGGGTT
32582787 GGGGTTTAAGGTTT-AGGTGTT
1 GGGGTTTAAGGTTTAAGG-GTT
* *
32582808 AGGGGTTAAAGG-ATAAGGGTT
1 -GGGGTTTAAGGTTTAAGGGTT
32582829 TATGGTTTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
20 4 0.08
21 33 0.66
22 13 0.26
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.39
Consensus pattern (21 bp):
GGGGTTTAAGGTTTAAGGGTT
Found at i:32582808 original size:64 final size:64
Alignment explanation
Indices: 32582617--32582842 Score: 233
Period size: 64 Copynumber: 3.5 Consensus size: 64
32582607 AGAGGTTAAA
* * *
32582617 GGTTTAGGGATTATGCGGTTTATGGGTTATGGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTTAG
1 GGTTAAGGGATTA-G-GGTTTATGGTTTATAGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTTAG
32582682 G
64 G
* * * * * ** **
32582683 TGTTAAGGG-TTAGGGGCTTAAGGTTTATAGTTT-AGGGTTTAGGATTT-AGGAGATACATGTTA
1 GGTTAAGGGATTA-GGGTTTATGGTTTATAGTTTAAGGG-TTGGGGTTTAAGG-TTTAGGTGTTA
32582745 GG
63 GG
* * *
32582747 GGTTTAGGGATTATGGTTTGTGGTTTATAGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTTAGG
1 GGTTAAGGGATTAGGGTTTATGGTTTATAGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTTAGG
* *
32582811 GGTTAAAGGATAAGGGTTTATGGTTTATAGTT
1 GGTTAAGGGATTAGGGTTTATGGTTTATAGTT
32582843 AATGTTTTAT
Statistics
Matches: 125, Mismatches: 30, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
63 7 0.06
64 97 0.78
65 14 0.11
66 7 0.06
ACGTcount: A:0.21, C:0.01, G:0.37, T:0.41
Consensus pattern (64 bp):
GGTTAAGGGATTAGGGTTTATGGTTTATAGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTTAGG
Found at i:32582880 original size:128 final size:129
Alignment explanation
Indices: 32582617--32582859 Score: 326
Period size: 128 Copynumber: 1.9 Consensus size: 129
32582607 AGAGGTTAAA
*
32582617 GGTTTAGGGATTATGCGGTTTATGGGTTATGGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTTAG
1 GGTTTAGGGATTAT-CGGTTTATGGGTTATAGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTTAG
* * * * * ** *
32582682 GTGTTAAGGGTTAGGGGCTTAAGGTTTATAGTTTAGGGTTTAGGATTTAGGAGATACATGTTAGG
65 GGGTTAAAGGATAAGGGCTTAAGGTTTATAGTTAAGGGTTTAGGATGCAGGAGATACAGGTTAGG
* *
32582747 GGTTTAGGGATTAT-GGTTTGTGGTTTATAGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTTAGG
1 GGTTTAGGGATTATCGGTTTATGGGTTATAGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTTAGG
* * * * *
32582811 GGTTAAAGGATAAGGGTTTATGGTTTATAGTTAATGTTTTATGATGCAG
66 GGTTAAAGGATAAGGGCTTAAGGTTTATAGTTAAGGGTTTAGGATGCAG
32582860 TGTTTAGGGG
Statistics
Matches: 98, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
128 84 0.86
130 14 0.14
ACGTcount: A:0.21, C:0.02, G:0.36, T:0.41
Consensus pattern (129 bp):
GGTTTAGGGATTATCGGTTTATGGGTTATAGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTTAGG
GGTTAAAGGATAAGGGCTTAAGGTTTATAGTTAAGGGTTTAGGATGCAGGAGATACAGGTTAGG
Found at i:32582914 original size:28 final size:29
Alignment explanation
Indices: 32582867--32582929 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
32582857 CAGTGTTTAG
32582867 GGGTTAGGGGTTTATAGTTTACGGT-TCAA
1 GGGTTAGGGGTTTATAGTTTA-GGTGTCAA
*
32582896 GGGTT-GGGGTTTA-AGGTTTAGGTGTTAA
1 GGGTTAGGGGTTTATA-GTTTAGGTGTCAA
32582924 GGGTTA
1 GGGTTA
32582930 ATGGATAGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
27 4 0.13
28 21 0.70
29 5 0.17
ACGTcount: A:0.19, C:0.03, G:0.40, T:0.38
Consensus pattern (29 bp):
GGGTTAGGGGTTTATAGTTTAGGTGTCAA
Found at i:32585283 original size:123 final size:122
Alignment explanation
Indices: 32585049--32585312 Score: 426
Period size: 123 Copynumber: 2.2 Consensus size: 122
32585039 CTTTGAAGAA
* * *
32585049 TTAATATGTAACCTATATTAGTATGATATATAACCTGCATTTCAAATTCATTACTAATAAGTTTT
1 TTAATATATAACCTATATTAGTATGATATATAACCTACATTTCAAATTCATTACTAATAAATTTT
32585114 TAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
66 TAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
*
32585171 TTAATATATAACCTATATTAGTATGGATATATAACCTACATTTCAAATTCATTACTAGTAAATTT
1 TTAATATATAACCTATATTAGTAT-GATATATAACCTACATTTCAAATTCATTACTAATAAATTT
*
32585236 TTAAATTTATTAAATAATAATTGTAATTATTATA-TTTTAAAT-A-TTAAAACCTATATTT
65 TTAAA-TT-TTAAA-AATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
32585294 TTAATATATAACCTATATT
1 TTAATATATAACCTATATT
32585313 TCAAATTCAT
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
122 23 0.17
123 76 0.57
124 3 0.02
125 13 0.10
126 18 0.14
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (122 bp):
TTAATATATAACCTATATTAGTATGATATATAACCTACATTTCAAATTCATTACTAATAAATTTT
TAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
Found at i:32585308 original size:20 final size:21
Alignment explanation
Indices: 32585266--32585318 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
32585256 TTGTAATTAT
32585266 TATATTTTAAATATTAAAACC
1 TATATTTTAAATATTAAAACC
* *
32585287 TATATTTTTAATA-TATAACC
1 TATATTTTAAATATTAAAACC
*
32585307 TATATTTCAAAT
1 TATATTTTAAAT
32585319 TCATTACTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.47
Consensus pattern (21 bp):
TATATTTTAAATATTAAAACC
Found at i:32585402 original size:97 final size:97
Alignment explanation
Indices: 32585197--32585806 Score: 593
Period size: 100 Copynumber: 6.2 Consensus size: 97
32585187 ATTAGTATGG
* * *
32585197 ATATATAACCTACATTTCAAATTCATTACTAGTAAATTTTTAAATTTATTAAATAATAATTGTAA
1 ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAA-TT-TTAAA-AATAATTATAA
32585262 TTATTATATTTTAAATATTAAAACCTATATTTTTA
63 TTATTATATTTTAAATATTAAAACCTATATTTTTA
*
32585297 ATATATAACCTATATTTCAAATTCATTACTAATAAGTTTTTAAATTTTAAAAATAATTATAATTA
1 ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAATTTTAAAAATAATTATAATTA
32585362 TTATATTTTAAATATTAAAACCTATATTTTTA
66 TTATATTTTAAATATTAAAACCTATATTTTTA
* * * *
32585394 GTATATAACCTATATTTCAAATTCATTACTAATAAA-TTAT-AATTATTATATTACTAATTAT-A
1 ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAATT-TTA-A-AAATAATTATAA
* * *
32585456 TTACTA-ATTATT--ATATTACTAA--T-TATATTTA
63 TTATTATATT-TTAAATATTA-AAACCTATATTTTTA
* * * ** * * * *
32585487 ATTATATTA-CTAATAAGTTTTTAAATTTTAAAAATAATTATAATTATTATATTTT-TAAATAAC
1 A-TATATAACCT-AT-A--TTTCAAA-TTCATTACTAA-TA-AATTTTTAAATTTTAAAAATAA-
* * * **
32585550 TTA-AA--ACCTATATTTTTAATA-TATAACCTATATTAGTATGG
57 TTATAATTA-TTATATTTTAAATATTAAAACCTATATT--T-TTA
* * *
32585591 ATATAAAACCTACATTTCAAATTCATTACTAATAAATTTTTAAATTTATTTAATAATAATTATAA
1 ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAA--T-TTTAAAAATAATTATAA
*
32585656 TTATTATATTTTAAATATTAAAACCTATTTTTTTA
63 TTATTATATTTTAAATATTAAAACCTATATTTTTA
* *
32585691 ATATATAACCTATATTTCAAATTCATTACTAATAAGTTTCTAAATTTTAAAAATAATTATAATTA
1 ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAATTTTAAAAATAATTATAATTA
32585756 TTATATTTTTAAATAACTTAAAACCTATATTTTTA
66 TTATA-TTTTAAAT-A-TTAAAACCTATATTTTTA
32585791 ATATATAACCTATATT
1 ATATATAACCTATATT
32585807 AGTATGGGTA
Statistics
Matches: 419, Mismatches: 52, Indels: 78
0.76 0.09 0.14
Matches are distributed among these distances:
93 9 0.02
94 9 0.02
95 11 0.03
96 11 0.03
97 127 0.30
98 43 0.10
99 22 0.05
100 133 0.32
101 15 0.04
102 16 0.04
103 19 0.05
104 4 0.01
ACGTcount: A:0.43, C:0.08, G:0.01, T:0.47
Consensus pattern (97 bp):
ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAATTTTAAAAATAATTATAATTA
TTATATTTTAAATATTAAAACCTATATTTTTA
Found at i:32585453 original size:15 final size:15
Alignment explanation
Indices: 32585429--32585481 Score: 78
Period size: 15 Copynumber: 3.8 Consensus size: 15
32585419 TTACTAATAA
32585429 ATTA-TAATTATTAT
1 ATTACTAATTATTAT
32585443 ATTACT-A--ATTAT
1 ATTACTAATTATTAT
32585455 ATTACTAATTATTAT
1 ATTACTAATTATTAT
32585470 ATTACTAATTAT
1 ATTACTAATTAT
32585482 ATTTAATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
12 11 0.31
13 1 0.03
14 5 0.14
15 18 0.51
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTACTAATTATTAT
Found at i:32585455 original size:12 final size:12
Alignment explanation
Indices: 32585438--32585500 Score: 85
Period size: 12 Copynumber: 5.2 Consensus size: 12
32585428 AATTATAATT
32585438 ATTATATTACTA
1 ATTATATTACTA
32585450 ATTATATTACTAA
1 ATTATATTACT-A
32585463 TTATTATATTACTA
1 --ATTATATTACTA
32585477 ATTATATT--TA
1 ATTATATTACTA
32585487 ATTATATTACTA
1 ATTATATTACTA
32585499 AT
1 AT
32585501 AAGTTTTTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
10 10 0.22
12 23 0.50
13 1 0.02
14 1 0.02
15 11 0.24
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTATATTACTA
Found at i:32585460 original size:37 final size:37
Alignment explanation
Indices: 32585418--32585502 Score: 104
Period size: 37 Copynumber: 2.3 Consensus size: 37
32585408 TTTCAAATTC
*
32585418 ATTACTAATAAATTATA-A-TTATTATATTACTAATTAT
1 ATTACTAATAAATTATATACTAATTATATT--TAATTAT
*
32585455 ATTACTAAT-TATTATATTACTAATTATATTTAATTAT
1 ATTACTAATAAATTATA-TACTAATTATATTTAATTAT
32585492 ATTACTAATAA
1 ATTACTAATAA
32585503 GTTTTTAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
36 6 0.15
37 25 0.61
38 1 0.02
39 9 0.22
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTACTAATAAATTATATACTAATTATATTTAATTAT
Found at i:32585480 original size:22 final size:22
Alignment explanation
Indices: 32585428--32585500 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 22
32585418 ATTACTAATA
32585428 AATTATAATT-ATTATATTACT
1 AATTATAATTAATTATATTACT
*
32585449 AATTATATTACTAATTATTATATTACT
1 AATTATA--A-T--TAATTATATTACT
*
32585476 AATTATATTTAATTATATTACT
1 AATTATAATTAATTATATTACT
32585498 AAT
1 AAT
32585501 AAGTTTTTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
21 7 0.16
22 15 0.34
23 1 0.02
24 2 0.05
26 1 0.02
27 18 0.41
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.52
Consensus pattern (22 bp):
AATTATAATTAATTATATTACT
Found at i:32585495 original size:27 final size:26
Alignment explanation
Indices: 32585418--32585491 Score: 116
Period size: 27 Copynumber: 2.9 Consensus size: 26
32585408 TTTCAAATTC
*
32585418 ATTACTAA-TAAATTATAATTATTAT
1 ATTACTAATTATATTATAATTATTAT
32585443 ATTACTAATTATATTACTAATTATTAT
1 ATTACTAATTATATTA-TAATTATTAT
32585470 ATTACTAATTATATT-TAATTAT
1 ATTACTAATTATATTATAATTAT
32585492 ATTACTAATA
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 15 0.33
26 6 0.13
27 25 0.54
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.51
Consensus pattern (26 bp):
ATTACTAATTATATTATAATTATTAT
Found at i:32585693 original size:21 final size:20
Alignment explanation
Indices: 32585664--32585703 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
32585654 AATTATTATA
32585664 TTTTAAATATTAAAACCTATT
1 TTTTAAATA-TAAAACCTATT
* *
32585685 TTTTTAATATATAACCTAT
1 TTTTAAATATAAAACCTAT
32585704 ATTTCAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTTAAATATAAAACCTATT
Found at i:32585756 original size:223 final size:220
Alignment explanation
Indices: 32585492--32585895 Score: 718
Period size: 223 Copynumber: 1.8 Consensus size: 220
32585482 ATTTAATTAT
*
32585492 ATTACTAATAAGTTTTTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
1 ATTACTAATAAGTTTCTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
32585557 CTATATTTTTAATATATAACCTATATTAGTATGGATATAAAACCTACATTTCAAATTCATTACTA
66 CTATATTTTTAATATATAACCTATATTAGTATGGATATAAAACCTACATTTCAAATTCATTACTA
* *
32585622 ATAAATTTTTAAATTTATTTAATAATAATTATAATTATTATATTTTAAATATTAAAACCTATTTT
131 ATAAATTTTTAAA--T-TTTAAAAATAATTATAATAATTATATTTTAAATATTAAAACCTATTTT
32585687 TTTAATATATAACCTATATTTCAAATTC
193 TTTAATATATAACCTATATTTCAAATTC
32585715 ATTACTAATAAGTTTCTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
1 ATTACTAATAAGTTTCTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
* **
32585780 CTATATTTTTAATATATAACCTATATTAGTATGGGTATTTAACCTACATTTCAAATTCATTACTA
66 CTATATTTTTAATATATAACCTATATTAGTATGGATATAAAACCTACATTTCAAATTCATTACTA
*
32585845 ATAAGTTTTTAAATTTTAAAAATAATTATAATAATTATATTTTAAATATTA
131 ATAAATTTTTAAATTTTAAAAATAATTATAATAATTATATTTTAAATATTA
32585896 TATCACTCAA
Statistics
Matches: 174, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
220 35 0.20
221 1 0.01
223 138 0.79
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (220 bp):
ATTACTAATAAGTTTCTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
CTATATTTTTAATATATAACCTATATTAGTATGGATATAAAACCTACATTTCAAATTCATTACTA
ATAAATTTTTAAATTTTAAAAATAATTATAATAATTATATTTTAAATATTAAAACCTATTTTTTT
AATATATAACCTATATTTCAAATTC
Found at i:32587341 original size:49 final size:50
Alignment explanation
Indices: 32587189--32587367 Score: 171
Period size: 49 Copynumber: 3.5 Consensus size: 50
32587179 GGTGATGAGA
* * *
32587189 TCCCATGTAAGACCATGTTCGGGACATGGCATTGGCATCATTAAGACTATGAGAGG
1 TCCCATGTAAGACCATGTTTGGGACATGGCATGGGCA-C---CA-A-TATGAGAGG
* * * * * *
32587245 TCCCATGTAAGGCCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTTTGGGACATGGCATGGGCACCAATATGAGAGG
** **
32587295 TCCCCCGTAAGACCATGTTTGGG-CATGGCATGGGCACCAATATGAGAAC
1 TCCCATGTAAGACCATGTTTGGGACATGGCATGGGCACCAATATGAGAGG
*
32587344 TCCCATGTAAGACCATATTTGGGA
1 TCCCATGTAAGACCATGTTTGGGA
32587368 TATGTCATTG
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
49 40 0.39
50 27 0.26
51 1 0.01
55 1 0.01
56 33 0.32
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTTTGGGACATGGCATGGGCACCAATATGAGAGG
Found at i:32587681 original size:20 final size:20
Alignment explanation
Indices: 32587643--32587681 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32587633 TAAGCAAGCA
*
32587643 AGTAAGTAAACAAGTAAGTG
1 AGTAAGTAAACAAGAAAGTG
*
32587663 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
32587682 AAAGATCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.26, T:0.18
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTG
Found at i:32588808 original size:9 final size:9
Alignment explanation
Indices: 32588796--32589102 Score: 204
Period size: 9 Copynumber: 35.9 Consensus size: 9
32588786 ATAAATAAAT
32588796 ATAACTTAC
1 ATAACTTAC
32588805 ATAACTTAC
1 ATAACTTAC
32588814 ATAACTTAC
1 ATAACTTAC
32588823 ATAA--TAC
1 ATAACTTAC
** *
32588830 ATAA-AAAT
1 ATAACTTAC
* *
32588838 ATATCATATC
1 ATAACTTA-C
32588848 ATAACTTAC
1 ATAACTTAC
* *
32588857 ACAACTCAC
1 ATAACTTAC
32588866 ATAACTTAC
1 ATAACTTAC
32588875 ATAACTTAC
1 ATAACTTAC
32588884 ATAA--TAC
1 ATAACTTAC
*
32588891 ATAA---AT
1 ATAACTTAC
32588897 ATAACTTAC
1 ATAACTTAC
32588906 ATAACTTAC
1 ATAACTTAC
*
32588915 ATAATTTAC
1 ATAACTTAC
* *
32588924 ATAA-ATAT
1 ATAACTTAC
* *
32588932 ATATCATATC
1 ATAACTTA-C
*
32588942 AAAACTTAC
1 ATAACTTAC
*
32588951 ATAATTTAC
1 ATAACTTAC
*
32588960 ATAACTCAC
1 ATAACTTAC
32588969 ATAACTTAC
1 ATAACTTAC
32588978 ATAACTTAC
1 ATAACTTAC
32588987 ATAA--TAC
1 ATAACTTAC
* *
32588994 ATAA-ATAT
1 ATAACTTAC
* *
32589002 ATATCATATC
1 ATAACTTA-C
* *
32589012 ATAGCTGAC
1 ATAACTTAC
*
32589021 ATAACTTAT
1 ATAACTTAC
*
32589030 TTATACTTAC
1 ATA-ACTTAC
32589040 ATAA--TAC
1 ATAACTTAC
32589047 ATAACTTAC
1 ATAACTTAC
32589056 ATAA--TAC
1 ATAACTTAC
*
32589063 ATAA---AT
1 ATAACTTAC
32589069 ATAACTTAC
1 ATAACTTAC
*
32589078 ATAACTTTC
1 ATAACTTAC
32589087 ATAAC-TAC
1 ATAACTTAC
32589095 ATAACTTA
1 ATAACTTA
32589103 TTTATACTTA
Statistics
Matches: 238, Mismatches: 42, Indels: 36
0.75 0.13 0.11
Matches are distributed among these distances:
6 10 0.04
7 35 0.15
8 21 0.09
9 149 0.63
10 23 0.10
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.34
Consensus pattern (9 bp):
ATAACTTAC
Found at i:32588869 original size:61 final size:58
Alignment explanation
Indices: 32588798--32589102 Score: 200
Period size: 61 Copynumber: 5.3 Consensus size: 58
32588788 AAATAAATAT
* *
32588798 AACTTACATAACTTACATAACTTACATAATACATAAAAATATATCATATCATAACTTACAC
1 AACTCACATAACTTACATAACTTACATAATACAT--AAATATAACATA-CATAACTTACAC
* *
32588859 AACTCACATAACTTACATAACTTACATAATACATAAATATAACTTACATAACTTACAT
1 AACTCACATAACTTACATAACTTACATAATACATAAATATAACATACATAACTTACAC
* * * * * * * * ** * *
32588917 AATTTACATAA-ATATATATCATATCA-AA-AC-T-TACATAATTTACATAACTCACAT
1 AACTCACATAACTTACATAACTTA-CATAATACATAAATATAACATACATAACTTACAC
* * * ***
32588971 AACTTACATAACTTACATAA--TACATAAATATATATCATATCATAGC-TGACATAACTTATTT
1 AACTCACATAACTTACATAACTTACAT-AATACATA--A-AT-ATAACAT-ACATAACTTACAC
* * * *
32589032 ATACTTACATAA--TACATAACTTACATAATACATAAATATAACTTACATAACTTTCAT
1 A-ACTCACATAACTTACATAACTTACATAATACATAAATATAACATACATAACTTACAC
32589089 AACT-ACATAACTTA
1 AACTCACATAACTTA
32589103 TTTATACTTA
Statistics
Matches: 195, Mismatches: 31, Indels: 40
0.73 0.12 0.15
Matches are distributed among these distances:
52 2 0.01
53 2 0.01
54 31 0.16
55 13 0.07
56 6 0.03
57 27 0.14
58 25 0.13
59 11 0.06
60 9 0.05
61 54 0.28
62 15 0.08
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.33
Consensus pattern (58 bp):
AACTCACATAACTTACATAACTTACATAATACATAAATATAACATACATAACTTACAC
Found at i:32588948 original size:94 final size:93
Alignment explanation
Indices: 32588805--32588990 Score: 284
Period size: 94 Copynumber: 2.0 Consensus size: 93
32588795 TATAACTTAC
*
32588805 ATAACTTACATAACTTACATAATACATAAAAATATATCATATCATAACTTACACAACTCACATAA
1 ATAACTTACATAACTTACATAATACATAAAAATATATCATATCAAAACTTACACAACTCACATAA
*
32588870 CTTACATAACTTACATAA-TACATAAAT
66 CTCACATAACTTACATAACTACATAAAT
* * * *
32588897 ATAACTTACATAACTTACATAATTTACATAAATATATATCATATCAAAACTTACATAATTTACAT
1 ATAACTTACATAACTTACATAA--TACATAAAAATATATCATATCAAAACTTACACAACTCACAT
32588962 AACTCACATAACTTACATAACTTACATAA
64 AACTCACATAACTTACATAAC-TACATAA
32588991 TACATAAATA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
92 22 0.26
94 55 0.65
96 7 0.08
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.32
Consensus pattern (93 bp):
ATAACTTACATAACTTACATAATACATAAAAATATATCATATCAAAACTTACACAACTCACATAA
CTCACATAACTTACATAACTACATAAAT
Found at i:32589064 original size:103 final size:102
Alignment explanation
Indices: 32588776--32589098 Score: 297
Period size: 103 Copynumber: 3.2 Consensus size: 102
32588766 ATAAATAACT
* * * *
32588776 CTTACATAACATAAATAAATATAACTTACATAACTTACATAACTTACAT--A-ATACATAAAAAT
1 CTTACAT-A-ATACATAAATATAACATACATAACTGACATAACTTACATAAATATACAT-AATAT
* * * *
32588838 -ATATCATATCATAACTTACACAACTCACATAACTTACATAA
63 CAAAACTTA-CATAA-TTACATAACTCACATAACTTACATAA
* * * * *
32588879 CTTACATAATACATAAATATAACTTACATAACTTACATAATTTACATAAATATATATCATATCAA
1 CTTACATAATACATAAATATAACATACATAACTGACATAACTTACATAAATATACATAATATCAA
32588944 AACTTACATAATTTACATAACTCACATAACTTACATAA
66 AACTTACATAA-TTACATAACTCACATAACTTACATAA
* ** *
32588982 CTTACATAATACATAAATATATATCATATCATAGCTGACATAACTTATTTATACT-TACATAATA
1 CTTACATAATACATAAATATA-A-CATA-CATAACTGACATAACTTACATA-AATATACATAATA
* *
32589046 -CATAACTTACATAA-TACATAA---ATATAACTTACATAA
62 TCAAAACTTACATAATTACATAACTCACATAACTTACATAA
*
32589082 CTTTCATAACTACATAA
1 CTTACATAA-TACATAA
32589099 CTTATTTATA
Statistics
Matches: 189, Mismatches: 22, Indels: 20
0.82 0.10 0.09
Matches are distributed among these distances:
100 22 0.12
101 44 0.23
102 1 0.01
103 69 0.37
104 11 0.06
105 16 0.08
106 24 0.13
107 2 0.01
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.33
Consensus pattern (102 bp):
CTTACATAATACATAAATATAACATACATAACTGACATAACTTACATAAATATACATAATATCAA
AACTTACATAATTACATAACTCACATAACTTACATAA
Found at i:32593094 original size:610 final size:610
Alignment explanation
Indices: 32591935--32593154 Score: 2350
Period size: 610 Copynumber: 2.0 Consensus size: 610
32591925 ACGTAAGTAA
32591935 GTTCTAGAATTTGATAAATATTCATTAATTATAATTTGTTTATCTTCTAAAAAAGTAAACCTCTT
1 GTTCTAGAATTTGATAAATATTCATTAATTATAATTTGTTTATCTTCTAAAAAAGTAAACCTCTT
*
32592000 TTTAACATAGTGAGGACAAACAAATCTTGAGATCTCGTTCATGCTCCCGAAGATTACAACATCGA
66 TTTAACATAGTGAGGACAAACAAATCTTGAGATCTCATTCATGCTCCCGAAGATTACAACATCGA
32592065 GAGATTAATAAGTTATTCACAGAATCTTTTCATGAATGGTTAAGCAAAACGATATGTAATTGAAG
131 GAGATTAATAAGTTATTCACAGAATCTTTTCATGAATGGTTAAGCAAAACGATATGTAATTGAAG
32592130 CTTTCATTGACAAATAATAATGTTTTCTCATAACATTTATAATTACTTAATTTACTTTCGATTCA
196 CTTTCATTGACAAATAATAATGTTTTCTCATAACATTTATAATTACTTAATTTACTTTCGATTCA
* *
32592195 ATAGGTTTGGAGTGGGAAGGACGTCAATGACGAAGTTAAATGGCTTTCCCAATGTCCGAATAGAG
261 ATAGGTTTGGAGTGGGAAGGACGCCAATGACAAAGTTAAATGGCTTTCCCAATGTCCGAATAGAG
* *
32592260 TAGTAAAAAGATATAGTGCCTTCCTCATCAATGGATTCAGATTTTATACAAAATATCGGGAGAGA
326 TAGTAAAAAGATATAGTGCCATCCTCATCAATGGATTCAGATTTCATACAAAATATCGGGAGAGA
32592325 TTGAGGAGAACTCAAAATTGTGGAATAGTTGTTAATTCTTCAATTATAAGTTATGCTAGTGCTAG
391 TTGAGGAGAACTCAAAATTGTGGAATAGTTGTTAATTCTTCAATTATAAGTTATGCTAGTGCTAG
*
32592390 GGACAGTGATCCTGTTGAGGGAAATTTGGAGTATTATGGACTTCTTACTAACATTATTGAGTTGG
456 GGACAGTAATCCTGTTGAGGGAAATTTGGAGTATTATGGACTTCTTACTAACATTATTGAGTTGG
*
32592455 ATTACTATGGCAAATGTAAAGTTGTCTTATTTCGATGTGATTGGACTGATGTTAATACTACTCGT
521 ATTACTAAGGCAAATGTAAAGTTGTCTTATTTCGATGTGATTGGACTGATGTTAATACTACTCGT
32592520 GGAATTAAACAAGATCAATTTGGTT
586 GGAATTAAACAAGATCAATTTGGTT
32592545 GTTCTAGAATTTGATAAATATTCATTAATTATAATTTGTTTATCTTCTAAAAAAGTAAACCTCTT
1 GTTCTAGAATTTGATAAATATTCATTAATTATAATTTGTTTATCTTCTAAAAAAGTAAACCTCTT
* *
32592610 TTTAACATAGTGAGTACAAACAACTCTTGAGATCTCATTCATGCTCCCGAAGATTACAACATCGA
66 TTTAACATAGTGAGGACAAACAAATCTTGAGATCTCATTCATGCTCCCGAAGATTACAACATCGA
32592675 GAGATTAATAAGTTATTCACAGAATCTTTTCATGAATGGTTAAGCAAAACGATATGTAATTGAAG
131 GAGATTAATAAGTTATTCACAGAATCTTTTCATGAATGGTTAAGCAAAACGATATGTAATTGAAG
32592740 CTTTCATTGACAAATAATAATGTTTTCTCATAACATTTATAATTACTTAATTTACTTTCGATTCA
196 CTTTCATTGACAAATAATAATGTTTTCTCATAACATTTATAATTACTTAATTTACTTTCGATTCA
*
32592805 ATAGGTTTGGAGTGGGAAGGATGCCAATGACAAAGTTAAATGGCTTTCCCAATGTCCGAATAGAG
261 ATAGGTTTGGAGTGGGAAGGACGCCAATGACAAAGTTAAATGGCTTTCCCAATGTCCGAATAGAG
32592870 TAGTAAAAAGATATAGTGCCATCCTCATCAATGGATTCAGATTTCATACAAAATATCGGGAGAGA
326 TAGTAAAAAGATATAGTGCCATCCTCATCAATGGATTCAGATTTCATACAAAATATCGGGAGAGA
32592935 TTGAGGAGAACTCAAAATTGTGGAATAGTTGTTAATTCTTCAATTATAAGTTATGCTAGTGCTAG
391 TTGAGGAGAACTCAAAATTGTGGAATAGTTGTTAATTCTTCAATTATAAGTTATGCTAGTGCTAG
32593000 GGACAGTAATCCTGTTGAGGGAAATTTGGAGTATTATGGACTTCTTACTAACATTATTGAGTTGG
456 GGACAGTAATCCTGTTGAGGGAAATTTGGAGTATTATGGACTTCTTACTAACATTATTGAGTTGG
32593065 ATTACTAAGGCAAATGTAAAGTTGTCTTATTTCGATGTGATTGGACTGATGTTAATACTACTCGT
521 ATTACTAAGGCAAATGTAAAGTTGTCTTATTTCGATGTGATTGGACTGATGTTAATACTACTCGT
32593130 GGAATTAAACAAGATCAATTTGGTT
586 GGAATTAAACAAGATCAATTTGGTT
32593155 TTACAATGGT
Statistics
Matches: 600, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
610 600 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (610 bp):
GTTCTAGAATTTGATAAATATTCATTAATTATAATTTGTTTATCTTCTAAAAAAGTAAACCTCTT
TTTAACATAGTGAGGACAAACAAATCTTGAGATCTCATTCATGCTCCCGAAGATTACAACATCGA
GAGATTAATAAGTTATTCACAGAATCTTTTCATGAATGGTTAAGCAAAACGATATGTAATTGAAG
CTTTCATTGACAAATAATAATGTTTTCTCATAACATTTATAATTACTTAATTTACTTTCGATTCA
ATAGGTTTGGAGTGGGAAGGACGCCAATGACAAAGTTAAATGGCTTTCCCAATGTCCGAATAGAG
TAGTAAAAAGATATAGTGCCATCCTCATCAATGGATTCAGATTTCATACAAAATATCGGGAGAGA
TTGAGGAGAACTCAAAATTGTGGAATAGTTGTTAATTCTTCAATTATAAGTTATGCTAGTGCTAG
GGACAGTAATCCTGTTGAGGGAAATTTGGAGTATTATGGACTTCTTACTAACATTATTGAGTTGG
ATTACTAAGGCAAATGTAAAGTTGTCTTATTTCGATGTGATTGGACTGATGTTAATACTACTCGT
GGAATTAAACAAGATCAATTTGGTT
Found at i:32600735 original size:21 final size:21
Alignment explanation
Indices: 32600665--32600735 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
32600655 AAATCAAACA
32600665 TCAAAATTACTGGACCAAATT
1 TCAAAATTACTGGACCAAATT
* * * **
32600686 TCAATATGACACTAATGACCAAACA
1 TCAAAAT--TACT--GGACCAAATT
32600711 TCAAAATTACTGGACCAAATT
1 TCAAAATTACTGGACCAAATT
32600732 TCAA
1 TCAA
32600736 TATGGACTCA
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 17 0.47
23 6 0.17
25 13 0.36
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.25
Consensus pattern (21 bp):
TCAAAATTACTGGACCAAATT
Found at i:32604654 original size:50 final size:50
Alignment explanation
Indices: 32604559--32604744 Score: 160
Period size: 50 Copynumber: 3.7 Consensus size: 50
32604549 TATTGAGGTT
* * *** *
32604559 ATGAGAGGTCCCATGTAAGGCCATGTTTGGGACATGTTGTTGGCACTGAA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAA
** * *
32604609 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAA
** * * * *
32604659 ATGAGAACTCTCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTAC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AA
* * ** *
32604708 AGGAAACATCCCATGTAAGACCATGTCTGAGACATGG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGG
32604745 TTTTGGCATG
Statistics
Matches: 108, Mismatches: 27, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
48 1 0.01
49 30 0.28
50 77 0.71
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAA
Found at i:32611828 original size:50 final size:50
Alignment explanation
Indices: 32611769--32611962 Score: 187
Period size: 50 Copynumber: 3.9 Consensus size: 50
32611759 TATTGAGGTT
* * *
32611769 ATGAGAGGTCCCATGTAAGGCCATGTTTGGGACATGGCGTTGGCACCGAA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAA
** * *
32611819 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAA
** * * * *
32611869 ATGAGAACTCTCATGTAAGACCATATCTAGGATATGGCATTGGCA--GTACA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-A-A
* ** * *
32611919 A-GAAACATCCCATGTAAGACCATGTTTGGGACATGGCTTTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32611963 TGTTATTATC
Statistics
Matches: 116, Mismatches: 26, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
48 1 0.01
49 35 0.30
50 80 0.69
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAA
Found at i:32612189 original size:20 final size:20
Alignment explanation
Indices: 32612164--32612212 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
32612154 TGAGTTATTT
32612164 AAGTAAGCAAGGAAGTAAAC
1 AAGTAAGCAAGGAAGTAAAC
* *
32612184 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGGAAGTAAAC
32612204 AAG-AAGCAA
1 AAGTAAGCAA
32612213 AGACCATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.57, C:0.06, G:0.27, T:0.10
Consensus pattern (20 bp):
AAGTAAGCAAGGAAGTAAAC
Found at i:32622428 original size:41 final size:41
Alignment explanation
Indices: 32622371--32622494 Score: 151
Period size: 41 Copynumber: 3.0 Consensus size: 41
32622361 TGGAGATAGC
* * **
32622371 GATTCAGGCTTTGTGCCTAGCATGCTTCTTGCTTGTGTATT
1 GATTCAGGCTTTGTGCCTAGCAAGCTTCATGCCGGTGTATT
*
32622412 GATTCAGGCTTTGTGCCTAGCAGGCTTCATGCCGGTGTATT
1 GATTCAGGCTTTGTGCCTAGCAAGCTTCATGCCGGTGTATT
* * * *
32622453 G-TATCAGGCCTTGAGCCTAGCAAGCTTCGTGTCGGTGTATT
1 GAT-TCAGGCTTTGTGCCTAGCAAGCTTCATGCCGGTGTATT
32622494 G
1 G
32622495 TATCAGGTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 1 0.01
41 72 0.99
ACGTcount: A:0.15, C:0.21, G:0.28, T:0.36
Consensus pattern (41 bp):
GATTCAGGCTTTGTGCCTAGCAAGCTTCATGCCGGTGTATT
Found at i:32645953 original size:50 final size:50
Alignment explanation
Indices: 32645846--32646041 Score: 214
Period size: 50 Copynumber: 3.8 Consensus size: 50
32645836 ATTTGGGTAA
* **
32645846 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGTATCATTGAGATTATG
1 AGAGATCTCATGTAAGACCATGTCTGGGACATGGCATTGG---CACCG-G--TATG
* *
32645902 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGGGATG
1 AGAGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGGTATG
* * * *
32645952 AGAGATCCCTTGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGGTATG
* * *
32646002 AGA-ACTCTCATGTAAGACCATATCTGGGATATGACATTGG
1 AGAGA-TCTCATGTAAGACCATGTCTGGGACATGGCATTGG
32646042 TAGTACAGAA
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
49 1 0.01
50 79 0.65
52 1 0.01
53 3 0.02
56 38 0.31
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (50 bp):
AGAGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGGTATG
Found at i:32646309 original size:12 final size:12
Alignment explanation
Indices: 32646292--32646330 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
32646282 ATGAGTTATT
32646292 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
32646304 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
32646316 TAAGTGAGTAAG
1 TAAGTAAGCAAG
32646328 TAA
1 TAA
32646331 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:32655357 original size:13 final size:13
Alignment explanation
Indices: 32655339--32655369 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
32655329 TTCCAGCAAC
32655339 TATGAATTTATTT
1 TATGAATTTATTT
32655352 TATGAATTTATTT
1 TATGAATTTATTT
*
32655365 GATGA
1 TATGA
32655370 TGATCTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (13 bp):
TATGAATTTATTT
Found at i:32655540 original size:50 final size:50
Alignment explanation
Indices: 32655465--32655707 Score: 398
Period size: 50 Copynumber: 4.8 Consensus size: 50
32655455 ATTTGGGTAA
32655465 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
32655515 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
32655565 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
32655615 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
**
32655665 AGAACATCCCATGTAAGACCATGTCTGGGACATGG-ATTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCA
32655708 TGTTATTATC
Statistics
Matches: 180, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
50 147 0.82
51 33 0.18
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:32662528 original size:13 final size:13
Alignment explanation
Indices: 32662510--32662540 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
32662500 TTCCAGCAAC
32662510 TATGAATTTATTT
1 TATGAATTTATTT
32662523 TATGAATTTATTT
1 TATGAATTTATTT
*
32662536 GATGA
1 TATGA
32662541 TGATCTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (13 bp):
TATGAATTTATTT
Found at i:32662710 original size:50 final size:50
Alignment explanation
Indices: 32662635--32662777 Score: 214
Period size: 50 Copynumber: 2.8 Consensus size: 50
32662625 ATTTGGGTAA
32662635 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
32662685 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
32662735 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32662778 TGTTATTATC
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 48 0.59
51 34 0.41
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:32664948 original size:85 final size:85
Alignment explanation
Indices: 32664836--32665030 Score: 207
Period size: 85 Copynumber: 2.3 Consensus size: 85
32664826 AGGCCATCCC
* * * * * * *
32664836 GTGGTGTGGGAACATC-AGGCAGCATCGACACCTTGTTACTTCTA-TATGCGGGAGCCTTT-CAC
1 GTGGTGTGGGAGCATCGA-GCAGCATCGACAACTTGGTACTT-GAGTATACAGGAG-CTTTGAAC
* **
32664898 ACCATTGACATCTTAGGACGTTG
63 ACCATTGACAACCGAGGACGTTG
* * * *
32664921 GTGGTGTGGGAGCATCGAGCAGTATCGACAACTTGGTGCTTGAGTGTACAGGAGCTTTGAACACT
1 GTGGTGTGGGAGCATCGAGCAGCATCGACAACTTGGTACTTGAGTATACAGGAGCTTTGAACACC
*
32664986 ATTGGCAACCGAGGACGTTG
66 ATTGACAACCGAGGACGTTG
32665006 GTGGTGTGGGAGCATCGAGCAGCAT
1 GTGGTGTGGGAGCATCGAGCAGCAT
32665031 TGGCACCTAG
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
84 5 0.05
85 85 0.93
86 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.26
Consensus pattern (85 bp):
GTGGTGTGGGAGCATCGAGCAGCATCGACAACTTGGTACTTGAGTATACAGGAGCTTTGAACACC
ATTGACAACCGAGGACGTTG
Found at i:32665034 original size:43 final size:43
Alignment explanation
Indices: 32664911--32665120 Score: 130
Period size: 43 Copynumber: 4.9 Consensus size: 43
32664901 ATTGACATCT
* * *
32664911 TAGGACGTTGGTGGTGTGGGAGCATCGAGCAGTATCGACAA-C
1 TAGGACGTTGGTGGTGCGGGAGCATCGAGCAGCATCGGCAACC
* * * * * * * *
32664953 TTGG-TGCTTGAGT-GTACAGGAGCTTTGAACA-CTATTGGCAACC
1 TAGGACG-TTG-GTGGTGCGGGAGCATCGAGCAGC-ATCGGCAACC
* * *
32664996 GAGGACGTTGGTGGTGTGGGAGCATCGAGCAGCATTGGC-ACC
1 TAGGACGTTGGTGGTGCGGGAGCATCGAGCAGCATCGGCAACC
* * * *
32665038 TAGG-TGCTTGGAT-GTGCGGGAGCCTC-AGACACCATCGGTAACC
1 TAGGACG-TTGG-TGGTGCGGGAGCATCGAG-CAGCATCGGCAACC
* *
32665081 TAGGACGTTGGTGGTGCGAGAGCATCGAGTAGCATCGGCA
1 TAGGACGTTGGTGGTGCGGGAGCATCGAGCAGCATCGGCA
32665121 CTTTGGTACC
Statistics
Matches: 121, Mismatches: 33, Indels: 27
0.67 0.18 0.15
Matches are distributed among these distances:
41 4 0.03
42 55 0.45
43 57 0.47
44 5 0.04
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (43 bp):
TAGGACGTTGGTGGTGCGGGAGCATCGAGCAGCATCGGCAACC
Found at i:32665044 original size:85 final size:85
Alignment explanation
Indices: 32664912--32665121 Score: 244
Period size: 85 Copynumber: 2.5 Consensus size: 85
32664902 TTGACATCTT
* * * *
32664912 AGGACGTTGGTGGTGTGGGAGCATCGAGCAGTATCGACAACTTGGTGCTT-GAGTGTACAGGAG-
1 AGGACGTTGGTGGTGTGGGAGCATCGAGCAGCATCGGCACCTAGGTGCTTGGA-TGTACAGGAGC
** * *
32664975 CTTTGAACACTATTGGCAACCG
65 CTCAG-ACACCATCGGCAACCG
* * *
32664997 AGGACGTTGGTGGTGTGGGAGCATCGAGCAGCATTGGCACCTAGGTGCTTGGATGTGCGGGAGCC
1 AGGACGTTGGTGGTGTGGGAGCATCGAGCAGCATCGGCACCTAGGTGCTTGGATGTACAGGAGCC
* *
32665062 TCAGACACCATCGGTAACCT
66 TCAGACACCATCGGCAACCG
* * *
32665082 AGGACGTTGGTGGTGCGAGAGCATCGAGTAGCATCGGCAC
1 AGGACGTTGGTGGTGTGGGAGCATCGAGCAGCATCGGCAC
32665122 TTTGGTACCT
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
85 101 0.95
86 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (85 bp):
AGGACGTTGGTGGTGTGGGAGCATCGAGCAGCATCGGCACCTAGGTGCTTGGATGTACAGGAGCC
TCAGACACCATCGGCAACCG
Found at i:32665705 original size:15 final size:16
Alignment explanation
Indices: 32665685--32665721 Score: 67
Period size: 15 Copynumber: 2.4 Consensus size: 16
32665675 AATTCTCTTA
32665685 TCTTCCTTACTG-TTT
1 TCTTCCTTACTGTTTT
32665700 TCTTCCTTACTGTTTT
1 TCTTCCTTACTGTTTT
32665716 TCTTCC
1 TCTTCC
32665722 CAAACTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.05, C:0.30, G:0.05, T:0.59
Consensus pattern (16 bp):
TCTTCCTTACTGTTTT
Found at i:32670629 original size:16 final size:16
Alignment explanation
Indices: 32670588--32670629 Score: 68
Period size: 15 Copynumber: 2.6 Consensus size: 16
32670578 AACAGAATTC
32670588 TTTTATCTTCCTTACTG
1 TTTT-TCTTCCTTACTG
32670605 TTTTT-TTCCTTACTG
1 TTTTTCTTCCTTACTG
32670620 TTTTTCTTCC
1 TTTTTCTTCC
32670630 CAAACTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.62
16 5 0.21
17 4 0.17
ACGTcount: A:0.07, C:0.24, G:0.05, T:0.64
Consensus pattern (16 bp):
TTTTTCTTCCTTACTG
Found at i:32671119 original size:22 final size:21
Alignment explanation
Indices: 32671086--32671128 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
32671076 TAGCTATTTC
*
32671086 TTTTTGTCTTTATCATT-TTAG
1 TTTTTCTCTTTAT-ATTGTTAG
32671107 TTTTTCTCTTTTATATTGTTAG
1 TTTTTCTC-TTTATATTGTTAG
32671129 GAGTCTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.14, C:0.09, G:0.09, T:0.67
Consensus pattern (21 bp):
TTTTTCTCTTTATATTGTTAG
Found at i:32676286 original size:6 final size:6
Alignment explanation
Indices: 32676275--32676299 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32676265 GCAATGATGT
32676275 AAAGGA AAAGGA AAAGGA AAAGGA A
1 AAAGGA AAAGGA AAAGGA AAAGGA A
32676300 TTGTTTCGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:32683540 original size:15 final size:15
Alignment explanation
Indices: 32683520--32683550 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32683510 AAATGAGTCC
32683520 ATTGCAATTGTAATA
1 ATTGCAATTGTAATA
32683535 ATTGCAATTGTAATA
1 ATTGCAATTGTAATA
32683550 A
1 A
32683551 GGCTAGGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (15 bp):
ATTGCAATTGTAATA
Found at i:32698376 original size:27 final size:27
Alignment explanation
Indices: 32698346--32698407 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
32698336 CCTGTTAGGT
**
32698346 AGGCGCCACTAATTGTGCCTCATACAG
1 AGGCGCCACTAAAAGTGCCTCATACAG
* **
32698373 AGGCGCCATTAAAAGTGCCTCATAGGG
1 AGGCGCCACTAAAAGTGCCTCATACAG
32698400 AGGCGCCA
1 AGGCGCCA
32698408 ATGGGTAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.18
Consensus pattern (27 bp):
AGGCGCCACTAAAAGTGCCTCATACAG
Found at i:32698436 original size:19 final size:19
Alignment explanation
Indices: 32698412--32698792 Score: 229
Period size: 19 Copynumber: 19.3 Consensus size: 19
32698402 GCGCCAATGG
32698412 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
32698431 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
* *
32698452 GTAATTATT-TTTG--TAAT
1 GTAATT-TTGTATGAATATT
* *
32698469 -TAATTTTGTATTTATAGTTTTT
1 GTAATTTTGTA-TGA-A--TATT
32698491 GATTAGTATTTTGTATGAATATT
1 G--TA--ATTTTGTATGAATATT
32698514 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
32698533 GTAATTATTTTAT-AATAAATTTT
1 GTAATT-TTGTATGAAT--A--TT
* * *
32698556 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
32698576 GT-ATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
32698594 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
32698615 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
* *
32698634 TTAATTTTTTATGAATATT
1 GTAATTTTGTATGAATATT
* * *
32698653 TTAATTTTGTATTTATAGTTTTT
1 GTAATTTTGTA-TGA-A--TATT
32698676 GATTAGTATTTTGTATGAATATT
1 G--TA--ATTTTGTATGAATATT
32698699 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
32698718 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
32698739 GTAATTTTG--T--A-A-T
1 GTAATTTTGTATGAATATT
32698752 -T--TTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
* *
32698768 TTAATTTTGCATGAATATT
1 GTAATTTTGTATGAATATT
32698787 GTAATT
1 GTAATT
32698793 ATTTTATAAT
Statistics
Matches: 289, Mismatches: 26, Indels: 94
0.71 0.06 0.23
Matches are distributed among these distances:
10 5 0.02
12 2 0.01
13 1 0.00
14 2 0.01
15 4 0.01
16 7 0.02
17 11 0.04
18 4 0.01
19 122 0.42
20 16 0.06
21 64 0.22
22 6 0.02
23 15 0.05
24 2 0.01
25 8 0.03
26 4 0.01
27 16 0.06
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.57
Consensus pattern (19 bp):
GTAATTTTGTATGAATATT
Found at i:32698466 original size:23 final size:21
Alignment explanation
Indices: 32698416--32698746 Score: 218
Period size: 21 Copynumber: 16.1 Consensus size: 21
32698406 CAATGGGTAA
32698416 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
32698437 TTTTGTATGAATATTGTAATTAT
1 TTTTGTATGAATATTGTAA-T-T
* *
32698460 TTTTGTAATTAATTTTGT-ATT
1 TTTTGT-ATGAATATTGTAATT
* *
32698481 TATAGTT-TTTG-AT-TAGT-A--
1 T-T--TTGTATGAATATTGTAATT
32698499 TTTTGTATGAATATTGTAA--
1 TTTTGTATGAATATTGTAATT
32698518 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
* * *
32698539 ATTTTATAATAAATTTTGT-ATT
1 -TTTTGT-ATGAATATTGTAATT
* * * * *
32698561 TATAGTTTTGGAT-TAGT-A--
1 TTTTG-TATGAATATTGTAATT
32698579 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
32698600 TTTTGTATGAATATTGTAA--
1 TTTTGTATGAATATTGTAATT
*
32698619 TTTTGTATGAATATTTTAA-T
1 TTTTGTATGAATATTGTAATT
*
32698639 TTTT-TATGAATATTTTAATT
1 TTTTGTATGAATATTGTAATT
* * * * *
32698659 TTGTATTTAT-AGTTTTTGATTAGTA
1 TT-T-TGTATGA-ATATTG--TAATT
32698684 TTTTGTATGAATATTGTAA--
1 TTTTGTATGAATATTGTAATT
32698703 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
32698724 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
32698745 TT
1 TT
32698747 GTAATTTTTT
Statistics
Matches: 248, Mismatches: 32, Indels: 60
0.73 0.09 0.18
Matches are distributed among these distances:
15 2 0.01
16 3 0.01
17 8 0.03
18 10 0.04
19 72 0.29
20 15 0.06
21 73 0.29
22 15 0.06
23 32 0.13
24 13 0.05
25 5 0.02
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (21 bp):
TTTTGTATGAATATTGTAATT
Found at i:32698467 original size:12 final size:12
Alignment explanation
Indices: 32698450--32698483 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
32698440 TGTATGAATA
32698450 TTGTAATTATTT
1 TTGTAATTATTT
*
32698462 TTGTAATTAATT
1 TTGTAATTATTT
*
32698474 TTGTATTTAT
1 TTGTAATTAT
32698484 AGTTTTTGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (12 bp):
TTGTAATTATTT
Found at i:32698576 original size:80 final size:82
Alignment explanation
Indices: 32698415--32698620 Score: 353
Period size: 80 Copynumber: 2.5 Consensus size: 82
32698405 CCAATGGGTA
* *
32698415 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTATTTTTGTAATTAATTTTGTAT
1 ATTTTGTATGAATATTGTAA-TTTTTGTATGAATATTGTAATTATTTTTATAATAAATTTTGTAT
*
32698480 TTATAGTTTTTGATTAGT
65 TTATAGTTTTGGATTAGT
32698498 ATTTTGTATGAATATTGTAA-TTTTGTATGAATATTGTAATTA-TTTTATAATAAATTTTGTATT
1 ATTTTGTATGAATATTGTAATTTTTGTATGAATATTGTAATTATTTTTATAATAAATTTTGTATT
32698561 TATAGTTTTGGATTAGT
66 TATAGTTTTGGATTAGT
32698578 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATT
1 ATTTTGTATGAATATTGTAA-TTTTTGTATGAATATTGTAATT
32698621 TTGTATGAAT
Statistics
Matches: 118, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
80 55 0.47
81 22 0.19
82 21 0.18
83 20 0.17
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.57
Consensus pattern (82 bp):
ATTTTGTATGAATATTGTAATTTTTGTATGAATATTGTAATTATTTTTATAATAAATTTTGTATT
TATAGTTTTGGATTAGT
Found at i:32698694 original size:105 final size:98
Alignment explanation
Indices: 32698498--32698746 Score: 390
Period size: 105 Copynumber: 2.4 Consensus size: 98
32698488 TTTGATTAGT
32698498 ATTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATAAATTTTGTATTTA
1 ATTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATT-TTTTATAATAAATTTTGTATTTA
32698563 TAGTTTTGGATTAGTATTTTGTATGAATATTGTA
65 TAGTTTTGGATTAGTATTTTGTATGAATATTGTA
*
32698597 ATTTTTTGTATGAATATTGTAATTTTGTATGAATATTTTAATTTTTTATGAATATTTTAATTTTG
1 A--TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTTTTTAT-AATA----AATTTTG
*
32698662 TATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTA
59 TATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTA
32698702 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTT
1 ATTTTGTATGAATATTGTAA--TTTTGTATGAATATTGTAATTTT
32698747 GTAATTTTTT
Statistics
Matches: 138, Mismatches: 3, Indels: 12
0.90 0.02 0.08
Matches are distributed among these distances:
99 1 0.01
100 6 0.04
101 43 0.31
103 19 0.14
105 69 0.50
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (98 bp):
ATTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTTTTTATAATAAATTTTGTATTTAT
AGTTTTGGATTAGTATTTTGTATGAATATTGTA
Found at i:32698748 original size:29 final size:29
Alignment explanation
Indices: 32698716--32698776 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
32698706 TGTATGAATA
32698716 TTGTAATTTTTTGTATGAATATTGTAATT
1 TTGTAATTTTTTGTATGAATATTGTAATT
*
32698745 TTGTAATTTTTTGTATGAATATTTTAATT
1 TTGTAATTTTTTGTATGAATATTGTAATT
32698774 TTG
1 TTG
32698777 CATGAATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (29 bp):
TTGTAATTTTTTGTATGAATATTGTAATT
Found at i:32698853 original size:60 final size:60
Alignment explanation
Indices: 32698788--32698903 Score: 178
Period size: 60 Copynumber: 1.9 Consensus size: 60
32698778 ATGAATATTG
* * * * * *
32698788 TAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGTTTC
1 TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTTC
32698848 TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTG
1 TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTG
32698904 ATTAGTTTAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (60 bp):
TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTTC
Found at i:32699060 original size:15 final size:16
Alignment explanation
Indices: 32699024--32699060 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
32699014 CTCATTTAAT
*
32699024 TTTTATATAATGTAAC
1 TTTTATATAAAGTAAC
32699040 TTTTATATAAAGTAA-
1 TTTTATATAAAGTAAC
32699055 TTTTAT
1 TTTTAT
32699061 TTGATTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (16 bp):
TTTTATATAAAGTAAC
Found at i:32699196 original size:27 final size:27
Alignment explanation
Indices: 32699128--32699236 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 27
32699118 AAATAAGACC
*
32699128 ATTGGCGCCTCTCA-ACATGGCACCACT
1 ATTGGCGCCTCTCAGATA-GGCACCACT
* *
32699155 AATGGTGCCTCTCAGATAGGCACCACT
1 ATTGGCGCCTCTCAGATAGGCACCACT
* *
32699182 ATTGGCGCCTCTCAGATAAGCACCACC
1 ATTGGCGCCTCTCAGATAGGCACCACT
* * * *
32699209 ATTAGCGCCTCTGAGATAGACGCCACT
1 ATTGGCGCCTCTCAGATAGGCACCACT
32699236 A
1 A
32699237 CTATGTATTA
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 66 0.97
28 2 0.03
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (27 bp):
ATTGGCGCCTCTCAGATAGGCACCACT
Found at i:32725084 original size:34 final size:34
Alignment explanation
Indices: 32725039--32725103 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
32725029 GTGCAAAACA
* * *
32725039 TTGTCAGTTTATCTGACTAGTGCTAGACACACAG
1 TTGTCAATTTATCCGACTAGCGCTAGACACACAG
*
32725073 TTGTCAATTTATCCGACTAGCGCTGGACACA
1 TTGTCAATTTATCCGACTAGCGCTAGACACA
32725104 AAATCTTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (34 bp):
TTGTCAATTTATCCGACTAGCGCTAGACACACAG
Found at i:32726888 original size:50 final size:50
Alignment explanation
Indices: 32726777--32727025 Score: 300
Period size: 50 Copynumber: 4.8 Consensus size: 50
32726767 ATTTGGGTAA
*
32726777 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATG
* * *
32726833 AGAGGTCCCATGTAAGACCATGCCTGGGAAATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
32726883 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGGTG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
32726933 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATAGGTACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
32726983 AGAACATCCCATGTAAGACCATGTTTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32727026 TGTTATGATC
Statistics
Matches: 168, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
50 93 0.55
51 32 0.19
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:32733995 original size:50 final size:50
Alignment explanation
Indices: 32733940--32734135 Score: 277
Period size: 50 Copynumber: 3.9 Consensus size: 50
32733930 CCTTGAGATC
* *
32733940 ATGAGAGGTCCCATGTAAGACCATCTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
*
32733990 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGTACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
* * * *
32734040 ATGAGAGGTCCC-CGTTAAGACCATGTCTGGGACATTGCATGGGCACCGAT
1 ATGAGAGGTCCCATG-TAAGACCATGTCTGGGACATGGCATTGGCACCGAG
** *
32734090 ATGAGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATGAG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32734136 TGTTATGATC
Statistics
Matches: 129, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
49 1 0.01
50 95 0.74
51 32 0.25
52 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
Found at i:32735567 original size:54 final size:54
Alignment explanation
Indices: 32735431--32735572 Score: 142
Period size: 54 Copynumber: 2.6 Consensus size: 54
32735421 AATACAGGAT
* * * *
32735431 GACACATGGCCTGCGACATGGCTGTGTGACCCAAGTTAGTGAGTTACACTGGCTGA
1 GACACA-GG-CTGGGACATGGCCGTGTGTCCCAAGTAAGTGAGTTACACTGGCTGA
* * * * * * *
32735487 GGCACGGGCTGGGACACGACCATGTGTCTCAAGTAAGTGAGTTACAC-GGGTAGA
1 GACACAGGCTGGGACATGGCCGTGTGTCCCAAGTAAGTGAGTTACACTGGCT-GA
*
32735541 GACATAGGCTGGGACATGGCCGTGTGTCCCAA
1 GACACAGGCTGGGACATGGCCGTGTGTCCCAA
32735573 TTTAAAAAGT
Statistics
Matches: 67, Mismatches: 18, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
53 3 0.04
54 58 0.87
55 2 0.03
56 4 0.06
ACGTcount: A:0.24, C:0.23, G:0.33, T:0.20
Consensus pattern (54 bp):
GACACAGGCTGGGACATGGCCGTGTGTCCCAAGTAAGTGAGTTACACTGGCTGA
Found at i:32736005 original size:11 final size:11
Alignment explanation
Indices: 32735991--32736080 Score: 63
Period size: 11 Copynumber: 8.8 Consensus size: 11
32735981 TATTTTTTAC
32735991 TTTAAAATATT
1 TTTAAAATATT
32736002 TTTAAAATACTT
1 TTTAAAATA-TT
*
32736014 TTT-TAAT-TT
1 TTTAAAATATT
*
32736023 TTT----TAAT
1 TTTAAAATATT
32736030 TTTAAAATATT
1 TTTAAAATATT
32736041 TTTAAAATACTT
1 TTTAAAATA-TT
**
32736053 TTTTTAAT-TT
1 TTTAAAATATT
32736063 TTTAAAA-A-T
1 TTTAAAATATT
32736072 TTTAAAATA
1 TTTAAAATA
32736081 AAAATGGGCC
Statistics
Matches: 63, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
6 1 0.02
7 4 0.06
9 13 0.21
10 8 0.13
11 24 0.38
12 13 0.21
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTAAAATATT
Found at i:32736032 original size:28 final size:27
Alignment explanation
Indices: 32735963--32736043 Score: 99
Period size: 28 Copynumber: 2.9 Consensus size: 27
32735953 AAATATATTT
32735963 ATTTTTTTAATTTTAAAATATTTTTTA
1 ATTTTTTTAATTTTAAAATATTTTTTA
* *** *
32735990 CTTTAAAATATTTTTAAAATACTTTTTTA
1 ATTT-TTTTAATTTTAAAATA-TTTTTTA
32736019 ATTTTTTTAATTTTAAAATATTTTT
1 ATTTTTTTAATTTTAAAATATTTTT
32736044 AAAATACTTT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
27 8 0.19
28 24 0.57
29 10 0.24
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (27 bp):
ATTTTTTTAATTTTAAAATATTTTTTA
Found at i:32736036 original size:39 final size:40
Alignment explanation
Indices: 32735983--32736080 Score: 146
Period size: 39 Copynumber: 2.5 Consensus size: 40
32735973 TTTTAAAATA
*
32735983 TTTTTT-ACTTTAAAATATTTTTAAAATAC-TTTTTTAAT
1 TTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAAT
32736021 TTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAAT
1 TTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAAT
*
32736061 TTTTTAAAAATTTTAAAATA
1 TTTTT--TAATTTTAAAATA
32736081 AAAATGGGCC
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
38 6 0.11
39 22 0.41
40 14 0.26
42 12 0.22
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (40 bp):
TTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAAT
Found at i:32736054 original size:28 final size:28
Alignment explanation
Indices: 32736001--32736054 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
32735991 TTTAAAATAT
* **
32736001 TTTTAAAATACTTTTTTAATTTTTTTAA
1 TTTTAAAATACTTTTTAAATACTTTTAA
32736029 TTTTAAAATA-TTTTTAAAATACTTTT
1 TTTTAAAATACTTTTT-AAATACTTTT
32736055 TTTAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (28 bp):
TTTTAAAATACTTTTTAAATACTTTTAA
Found at i:32736058 original size:31 final size:30
Alignment explanation
Indices: 32736020--32736080 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 30
32736010 ACTTTTTTAA
32736020 TTTTTTTAA-TTTTAAAATATTTTTAAAATAC
1 TTTTTTTAATTTTTAAAA-A-TTTTAAAATAC
32736051 TTTTTTTAATTTTTTAAAAATTTTAAAATA
1 TTTTTTTAA-TTTTTAAAAATTTTAAAATA
32736081 AAAATGGGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 19 0.68
32 1 0.04
33 8 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (30 bp):
TTTTTTTAATTTTTAAAAATTTTAAAATAC
Found at i:32748260 original size:44 final size:44
Alignment explanation
Indices: 32748192--32748427 Score: 190
Period size: 44 Copynumber: 5.1 Consensus size: 44
32748182 TAGATCGCAT
*
32748192 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* * *
32748236 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* ** * *
32748280 CGGATT-AAAATA-AAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG
1 CAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTAC---AGCG--GA--G
**
32748331 CATTAGATTGAAGCCCGAAATCTTATCTCCCTGAGATTACAGCGGAG
1 C---AGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* * * * *
32748378 CAGATTAAAGCTAGTAATCCTATCTCCCTGAAATTACAGTGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
32748422 CAGATT
1 CAGATT
32748428 AAAATAAAGG
Statistics
Matches: 151, Mismatches: 25, Indels: 32
0.73 0.12 0.15
Matches are distributed among these distances:
42 1 0.01
43 5 0.03
44 104 0.69
47 5 0.03
49 4 0.03
51 5 0.03
54 22 0.15
55 3 0.02
56 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
Found at i:32748409 original size:98 final size:97
Alignment explanation
Indices: 32748237--32748426 Score: 229
Period size: 98 Copynumber: 1.9 Consensus size: 97
32748227 ACAGCGGAGC
* * * * * *
32748237 AGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTA
1 AGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAAT-AAGAATCCTA
* * *
32748302 TCTCTCTGAAGTTACAGTAGAGTAGATCGCATT
65 TCTCCCTGAAATTACAGTAGAGCAGATCGCATT
* * *
32748335 AGATTGAAGCCCGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCT-AGTAATCCT
1 AGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAA-ATAAG-AATCCT
*
32748399 ATCTCCCTGAAATTACAGTGGAGCAGAT
64 ATCTCCCTGAAATTACAGTAGAGCAGAT
32748427 TAAAATAAAG
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
97 2 0.03
98 74 0.96
99 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (97 bp):
AGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAATAAGAATCCTAT
CTCCCTGAAATTACAGTAGAGCAGATCGCATT
Found at i:32748446 original size:44 final size:44
Alignment explanation
Indices: 32748349--32748470 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 44
32748339 TGAAGCCCGA
* * *
32748349 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGT
1 AATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAAAGATAGT
*
32748393 AATCCTATCTCCCTGAAATTACAGTGGAGCAGATTAAA-ATAAAG-
1 AATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAAAGAT--AGT
* * * * *
32748437 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
1 AATCTTATCTCCCTGAAATTACAGTGGAGCAGAT
32748471 CGAATCAGAT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
43 1 0.02
44 63 0.95
45 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAATTACAGTGGAGCAGATTAAAGATAGT
Found at i:32748513 original size:98 final size:98
Alignment explanation
Indices: 32748378--32748555 Score: 293
Period size: 98 Copynumber: 1.8 Consensus size: 98
32748368 TACAGCGGAG
*
32748378 CAGATTAAAGCTAGTAATCCTATCTCCCTGAAATTACAGTGGAGCAGATTAAAATAAAGGATCTT
1 CAGATTAAAGCCAGTAATCCTATCTCCCTGAAATTACAGTGGAGCAGATTAAAATAAAGGATCTT
32748443 ATCTCTCTGAAGTTACAGTAGAGTAGATCGAAT
66 ATCTCTCTGAAGTTACAGTAGAGTAGATCGAAT
* * ** *
32748476 CAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAGTAAAGGATCTT
1 CAGATTAAAGCCAGTAATCCTATCTCCCTGAAATTACAGTGGAGCAGATTAAAATAAAGGATCTT
*
32748541 ATCTTTCTGAAGTTA
66 ATCTCTCTGAAGTTA
32748556 TAATTGAATA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 73 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (98 bp):
CAGATTAAAGCCAGTAATCCTATCTCCCTGAAATTACAGTGGAGCAGATTAAAATAAAGGATCTT
ATCTCTCTGAAGTTACAGTAGAGTAGATCGAAT
Found at i:32748551 original size:142 final size:142
Alignment explanation
Indices: 32748145--32748529 Score: 662
Period size: 142 Copynumber: 2.7 Consensus size: 142
32748135 TCCTAATCGG
*
32748145 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGCATCAGATTGAAGCCAGAAAT
1 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
* *
32748210 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
66 CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAATTACAG
*
32748275 TGGAGCGGATTA
131 TGGAGCAGATTA
* *
32748287 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATTAGATTGAAGCCCGAAAT
1 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
32748352 CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAATTACAG
66 CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAATTACAG
32748417 TGGAGCAGATTA
131 TGGAGCAGATTA
* *
32748429 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAGATTGAAGCCAGTAAT
1 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
* * **
32748494 CCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAG
66 CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAG
32748530 TAAAGGATCT
Statistics
Matches: 229, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
142 229 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (142 bp):
AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAATTACAG
TGGAGCAGATTA
Found at i:32748568 original size:98 final size:98
Alignment explanation
Indices: 32748378--32748576 Score: 290
Period size: 98 Copynumber: 2.0 Consensus size: 98
32748368 TACAGCGGAG
*
32748378 CAGATTAAAGCTAGTAATCCTATCTCCCTGAAATTACAGTGGAGCAGATTAAAATAAAGGATCTT
1 CAGATTAAAGCCAGTAATCCTATCTCCCTGAAATTACAGTGGAGCAGATTAAAATAAAGGATCTT
* *
32748443 ATCTCTCTGAAGTTACAGTAGAGTAGATCGAAT
66 ATCTCTCTGAAGTTACAATAGAATAGATCGAAT
* * ** *
32748476 CAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAGTAAAGGATCTT
1 CAGATTAAAGCCAGTAATCCTATCTCCCTGAAATTACAGTGGAGCAGATTAAAATAAAGGATCTT
* * * *
32748541 ATCTTTCTGAAGTTATAATTGAATAGATCGCAT
66 ATCTCTCTGAAGTTACAATAGAATAGATCGAAT
32748574 CAG
1 CAG
32748577 GTCTTATCTC
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.30
Consensus pattern (98 bp):
CAGATTAAAGCCAGTAATCCTATCTCCCTGAAATTACAGTGGAGCAGATTAAAATAAAGGATCTT
ATCTCTCTGAAGTTACAATAGAATAGATCGAAT
Found at i:32749427 original size:6 final size:6
Alignment explanation
Indices: 32749416--32749442 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
32749406 ACCAACGGGA
32749416 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
32749443 CTCGAGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:32760738 original size:50 final size:50
Alignment explanation
Indices: 32760614--32760859 Score: 190
Period size: 50 Copynumber: 4.8 Consensus size: 50
32760604 GAATATAACA
* * * ** * * * *
32760614 TGCCAAAGCTATGTCCCAGA-ATAGTCTTACATGGGATGTTTCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* * * **
32760662 TGCCAATGCCATATCTCAGATATGGTCTTACATGGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* ** * *
32760712 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* * * * * *
32760762 TCCCAACGCCATGTCCCAAACATGGTCTTACATGAGACCTCGCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T--A-GG
*
32760818 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
32760860 TTACCCAAAT
Statistics
Matches: 152, Mismatches: 38, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
48 16 0.11
49 21 0.14
50 77 0.51
53 1 0.01
56 37 0.24
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
Found at i:32763352 original size:20 final size:20
Alignment explanation
Indices: 32763327--32763371 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
32763317 ATTATTTTAA
32763327 AATTATTTTTGACCCA-AATT
1 AATTATTTTT-ACCCATAATT
*
32763347 AATTATTTTTACCTATAATT
1 AATTATTTTTACCCATAATT
32763367 AATTA
1 AATTA
32763372 ATTACTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (20 bp):
AATTATTTTTACCCATAATT
Done.