Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 108 of 190
Found at i:32768306 original size:25 final size:24
Alignment explanation
Indices: 32768265--32768317 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
32768255 GTCATTAGGG
* *
32768265 TTACCGATTTCAGCTCGTATGAGC
1 TTACCGATCTCAGCTCGCATGAGC
32768289 TTACCGATACTCAGCTCGCATGAGC
1 TTACCGAT-CTCAGCTCGCATGAGC
32768314 TTAC
1 TTAC
32768318 TTTTATTCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (24 bp):
TTACCGATCTCAGCTCGCATGAGC
Found at i:32768327 original size:25 final size:25
Alignment explanation
Indices: 32768273--32768379 Score: 92
Period size: 25 Copynumber: 4.3 Consensus size: 25
32768263 GGTTACCGAT
*
32768273 TTCAGCTCGTATGAGCTTACCGA-TA
1 TTCAGCTCGCATGAGCTTACC-ATTA
* **
32768298 CTCAGCTCGCATGAGCTTACTTTTA
1 TTCAGCTCGCATGAGCTTACCATTA
* * *
32768323 TTCAGCTCGGAGGACCTTACCATTA
1 TTCAGCTCGCATGAGCTTACCATTA
* * *
32768348 TTCAGCTCGGAGGACCTTACCATT-
1 TTCAGCTCGCATGAGCTTACCATTA
*
32768372 TACAGCTC
1 TTCAGCTC
32768380 ATAGGAGCAT
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
24 7 0.10
25 63 0.90
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (25 bp):
TTCAGCTCGCATGAGCTTACCATTA
Found at i:32768367 original size:50 final size:50
Alignment explanation
Indices: 32768273--32768367 Score: 111
Period size: 50 Copynumber: 1.9 Consensus size: 50
32768263 GGTTACCGAT
* * * * *
32768273 TTCAGCTCGTATGAGCTTACCGATACTCAGCTCGCATGAGCTTACTTTTA
1 TTCAGCTCGGAGGACCTTACCGATACTCAGCTCGCAGGACCTTACTTTTA
* *
32768323 TTCAGCTCGGAGGACCTTACC-ATTATTCAGCTCGGAGGACCTTAC
1 TTCAGCTCGGAGGACCTTACCGA-TACTCAGCTCGCAGGACCTTAC
32768368 CATTTACAGC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
49 1 0.03
50 36 0.97
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (50 bp):
TTCAGCTCGGAGGACCTTACCGATACTCAGCTCGCAGGACCTTACTTTTA
Found at i:32770321 original size:20 final size:20
Alignment explanation
Indices: 32770288--32770331 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
32770278 TAATGAGAGT
* *
32770288 AAATGAAATGGAAAGTAATA
1 AAATGAAATGGAAAATAAGA
32770308 AAATGCAAAT-GAAAATAAGA
1 AAATG-AAATGGAAAATAAGA
32770328 AAAT
1 AAAT
32770332 TTGAAAGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.64, C:0.02, G:0.16, T:0.18
Consensus pattern (20 bp):
AAATGAAATGGAAAATAAGA
Found at i:32776581 original size:14 final size:14
Alignment explanation
Indices: 32776559--32776592 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
32776549 GGGGACAATA
*
32776559 TTGTAATTGAAGGG
1 TTGTTATTGAAGGG
32776573 TTGTTATTGAAGGG
1 TTGTTATTGAAGGG
32776587 TTGTTA
1 TTGTTA
32776593 CTATTTGGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (14 bp):
TTGTTATTGAAGGG
Found at i:32778715 original size:19 final size:20
Alignment explanation
Indices: 32778684--32778740 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 20
32778674 AAGACTAAGA
32778684 ACCATTCCATTTACTTAGTT
1 ACCATTCCATTTACTTAGTT
*
32778704 ACCATT-CATTTACTTACTT
1 ACCATTCCATTTACTTAGTT
* *
32778723 TCTATTCCATTTACTTAG
1 ACCATTCCATTTACTTAG
32778741 CATAAACTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.25, C:0.25, G:0.04, T:0.47
Consensus pattern (20 bp):
ACCATTCCATTTACTTAGTT
Found at i:32780786 original size:12 final size:12
Alignment explanation
Indices: 32780769--32780812 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
32780759 ATGAGTTATT
32780769 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
32780781 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
32780793 TAAGTGAGTAAG
1 TAAGTAAGCAAG
*
32780805 TAAATAAG
1 TAAGTAAG
32780813 AAAACAAAGA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.52, C:0.05, G:0.23, T:0.20
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:32784768 original size:56 final size:51
Alignment explanation
Indices: 32784672--32784911 Score: 193
Period size: 50 Copynumber: 4.7 Consensus size: 51
32784662 ATTTGGGTAA
* * *
32784672 AGAGATCCCACGTAAGACCATGTCTGGGACTTGGCATTGGCATCATTGAAGTTATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATC--CG-AG--ATG
* * *
32784728 AGAGGTCCCATGTAAGGCCATGTCTGGGACATGGCGTTGGCA-CCGAGATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCCGAGATG
* * *
32784778 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCAT-CGATATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCCGAGATG
*** * * * * * *
32784828 AGAACACCCATGTAAGACCATATCTGGGATACGACATTGGCAGTAC-A-A-G
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA-TCCGAGATG
* ** *
32784877 AAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGC
32784912 TTTAGCAAGT
Statistics
Matches: 151, Mismatches: 30, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
49 28 0.19
50 79 0.52
51 2 0.01
52 3 0.02
53 1 0.01
55 1 0.01
56 37 0.25
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (51 bp):
AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCCGAGATG
Found at i:32784868 original size:100 final size:103
Alignment explanation
Indices: 32784672--32784911 Score: 247
Period size: 106 Copynumber: 2.3 Consensus size: 103
32784662 ATTTGGGTAA
* * ***
32784672 AGAGATCCCACGTAAGACCATGTCTGGGACTTGGCATTGGCATCATTGAAGTTATGAGAGGTCCC
1 AGAGATCCCACGTAAGACCATGTCTGGGACATGGCATGGGCATC--TGAAG-TATGAGAACACCC
* * * * *
32784737 ATGTAAGGCCATGTCTGGGACATGGCGTTGGCACCGAGATG
63 ATGTAAGACCATATCTGGGACACGACATTGGCACCGAGATG
* *
32784778 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCATC-G-A-TATGAGAACACCCATG
1 AGAGATCCCACGTAAGACCATGTCTGGGACATGGCATGGGCATCTGAAGTATGAGAACACCCATG
* * *
32784840 TAAGACCATATCTGGGATACGACATTGGCA--GTACAAG
66 TAAGACCATATCTGGGACACGACATTGGCACCG-AGATG
* * *
32784877 AAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AGAGATCCCACGTAAGACCATGTCTGGGACATGGC
32784912 TTTAGCAAGT
Statistics
Matches: 113, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
98 1 0.01
99 33 0.29
100 37 0.33
102 1 0.01
103 1 0.01
106 40 0.35
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (103 bp):
AGAGATCCCACGTAAGACCATGTCTGGGACATGGCATGGGCATCTGAAGTATGAGAACACCCATG
TAAGACCATATCTGGGACACGACATTGGCACCGAGATG
Found at i:32787900 original size:49 final size:51
Alignment explanation
Indices: 32787831--32787968 Score: 172
Period size: 49 Copynumber: 2.7 Consensus size: 51
32787821 TATTATTCGA
* * * * **
32787831 TACACATAGTAGCCTTCACATAGTACTACATAGGTGATCAAA-TTTTCCGG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCCGG
* * *
32787881 TTCA-GTAGTAGCCTGCACATAATACTACACACGTGACCAAAGCCTTCCGG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCCGG
*
32787931 TACACATAGTAGCCTGCACATAGTACTACACATGTGAC
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGAC
32787969 AATTATCTAT
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
49 31 0.42
50 12 0.16
51 30 0.41
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (51 bp):
TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCCGG
Found at i:32787949 original size:51 final size:50
Alignment explanation
Indices: 32787831--32788014 Score: 176
Period size: 51 Copynumber: 3.7 Consensus size: 50
32787821 TATTATTCGA
* * * * **
32787831 TACACATAGTAGCCTTCACATAGTACTACATAGGTGATCAAATTTTCCGG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCGG
* * *
32787881 TTCA-GTAGTAGCCTGCACATAATACTACACACGTGACCAAAGCCTTCCGG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CCTTCCGG
* * *
32787931 TACACATAGTAGCCTGCACATAGTACTACACATGTGA-CAATTATCTAT-CGA
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAA--ACCT-TCCGG
* * *
32787982 TACACGTAGTAGCTTGCACTTAGTACTACACAC
1 TACACATAGTAGCCTGCACATAGTACTACACAC
32788015 ATGTTTATAG
Statistics
Matches: 110, Mismatches: 19, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
49 31 0.28
50 15 0.14
51 62 0.56
52 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (50 bp):
TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCGG
Found at i:32795646 original size:51 final size:50
Alignment explanation
Indices: 32795522--32795706 Score: 185
Period size: 51 Copynumber: 3.7 Consensus size: 50
32795512 TATCATTCGA
* * * *
32795522 TACACGTAGTAGCCTTCACATAGTACTACACACGTGAGCAAACTTTCCAG
1 TACACGTAGTAGCCTACACATAGTACTACACACTTGACCAAACCTTCCAG
* * * *
32795572 TTCACGTAGTAGCCTGCACATAGTAGTACACACTTGACCAAAGCCTTCCGG
1 TACACGTAGTAGCCTACACATAGTACTACACACTTGACCAAA-CCTTCCAG
* * * * *
32795623 TACACATAGTAGCCTACAGATAGTACTACACA-TGTGACCATTATCTATCGA-
1 TACACGTAGTAGCCTACACATAGTACTACACACT-TGACCA-AACCT-TCCAG
* *
32795674 TACACGTAGTAGCCTGCACTTAGTACTACACAC
1 TACACGTAGTAGCCTACACATAGTACTACACAC
32795707 GCGTTTATAG
Statistics
Matches: 110, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
50 38 0.35
51 69 0.63
52 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (50 bp):
TACACGTAGTAGCCTACACATAGTACTACACACTTGACCAAACCTTCCAG
Found at i:32801243 original size:14 final size:15
Alignment explanation
Indices: 32801219--32801247 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32801209 TGCTATGCTT
32801219 AATGAAATGTTTAGA
1 AATGAAATGTTTAGA
32801234 AATG-AATGTTTAGA
1 AATGAAATGTTTAGA
32801248 TGTTACGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (15 bp):
AATGAAATGTTTAGA
Found at i:32806451 original size:27 final size:27
Alignment explanation
Indices: 32806421--32806728 Score: 314
Period size: 27 Copynumber: 11.6 Consensus size: 27
32806411 TCGAAATATG
* *
32806421 CTCGAAGGGAAAAATTACTAAATTACC
1 CTCGAAGGGTAAAATTACTAAAATACC
*
32806448 CTCGAAGGGTTAAATTAC-AGAAATACC
1 CTCGAAGGGTAAAATTACTA-AAATACC
32806475 CTCGAAGGGTAAAATTACTAAAATACC
1 CTCGAAGGGTAAAATTACTAAAATACC
* *
32806502 CTCAAAGGGTAAAATTA-TCGAAATA--
1 CTCGAAGGGTAAAATTACT-AAAATACC
* * *
32806527 -TCGATGGCTAAAATTACTAAAATACA
1 CTCGAAGGGTAAAATTACTAAAATACC
* *
32806553 TTCGAAGTGTAAAAATTA-TCAAAATACC
1 CTCGAAGGGT-AAAATTACT-AAAATACC
* *
32806581 CTCGAAGGGTAAAATTATTGAAATACC
1 CTCGAAGGGTAAAATTACTAAAATACC
*
32806608 CTCGAAGGGTAAAATTACCAAAATACC
1 CTCGAAGGGTAAAATTACTAAAATACC
*
32806635 CAT-GAAGGGTAAAATTA-TCGAAATACC
1 C-TCGAAGGGTAAAATTACT-AAAATACC
*
32806662 CTCGAAGGGTAAAATTACTGAAATA-C
1 CTCGAAGGGTAAAATTACTAAAATACC
* *
32806688 CTCTAAGGGTAAAATTAC-AGTAATACC
1 CTCGAAGGGTAAAATTACTA-AAATACC
*
32806715 C-CTAAGGGTAAAAT
1 CTCGAAGGGTAAAAT
32806729 GATCTTTATA
Statistics
Matches: 240, Mismatches: 25, Indels: 33
0.81 0.08 0.11
Matches are distributed among these distances:
24 18 0.08
25 1 0.00
26 38 0.16
27 157 0.65
28 26 0.11
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.24
Consensus pattern (27 bp):
CTCGAAGGGTAAAATTACTAAAATACC
Found at i:32806590 original size:106 final size:105
Alignment explanation
Indices: 32806431--32806728 Score: 327
Period size: 106 Copynumber: 2.8 Consensus size: 105
32806421 CTCGAAGGGA
* * *
32806431 AAAATTACTAAATTACCCTCGAAGGGTTAAATTACAGAAATACCCTCGAAGGGTAAAATTACTAA
1 AAAATTACTAAAATACACTCGAAGGGTAAAATTACAGAAATACCCTCGAAGGGTAAAATTACTAA
32806496 AATACCCTCAAAGGGTAAAATTATCGAAATATCGATGGCT
66 AATACCCTCAAAGGGTAAAATTATCGAAATATCGATGGCT
* * *
32806536 AAAATTACTAAAATACATTCGAAGTGTAAAAATTATCA-AAATACCCTCGAAGGGTAAAATTATT
1 AAAATTACTAAAATACACTCGAAGGGT-AAAATTA-CAGAAATACCCTCGAAGGGTAAAATTACT
* * * * * * *
32806600 GAAATACCCTCGAAGGGTAAAATTACCAAAATACCCATGAAGGGT
64 AAAATACCCTCAAAGGGTAAAATTATCGAAATA-TC--GATGGCT
* * * *
32806645 AAAATTA-TCGAAATACCCTCGAAGGGTAAAATTACTGAAATA-CCTCTAAGGGTAAAATTAC-A
1 AAAATTACT-AAAATACACTCGAAGGGTAAAATTACAGAAATACCCTCGAAGGGTAAAATTACTA
* *
32806707 GTAATACCC-CTAAGGGTAAAAT
65 -AAATACCCTCAAAGGGTAAAAT
32806729 GATCTTTATA
Statistics
Matches: 162, Mismatches: 23, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
105 23 0.14
106 72 0.44
107 28 0.17
108 13 0.08
109 26 0.16
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.24
Consensus pattern (105 bp):
AAAATTACTAAAATACACTCGAAGGGTAAAATTACAGAAATACCCTCGAAGGGTAAAATTACTAA
AATACCCTCAAAGGGTAAAATTATCGAAATATCGATGGCT
Found at i:32806614 original size:133 final size:131
Alignment explanation
Indices: 32806421--32806728 Score: 381
Period size: 133 Copynumber: 2.3 Consensus size: 131
32806411 TCGAAATATG
* * *
32806421 CTCGAAGGGAAAAATTACTAAATTACCCTCGAAGGGTTAAATTACAGAAATACCCTCGAAGGGTA
1 CTCGAAGGTAAAAATTAC-AAAATACCCTCGAAGGGTAAAATTACAGAAATACCCTCGAAGGGTA
* *
32806486 AAATTACTAAAATACCC-TCAAAGGGTAAAATTATCGAAATA-TCGATGGCTAAAATTACTAAAA
65 AAATTACCAAAATACCCAT-AAAGGGTAAAATTATCGAAATACTCGAAGGCTAAAATTACTAAAA
32806549 TAC
129 TAC
* **
32806552 ATTCGAAGTGTAAAAATTATCAAAATACCCTCGAAGGGTAAAATTATTGAAATACCCTCGAAGGG
1 -CTCGAAG-GTAAAAATTA-CAAAATACCCTCGAAGGGTAAAATTACAGAAATACCCTCGAAGGG
* * *
32806617 TAAAATTACCAAAATACCCATGAAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTACTG
63 TAAAATTACCAAAATACCCATAAAGGGTAAAATTATCGAAATA--CTCGAAGGCTAAAATTACTA
32806682 AAATAC
126 AAATAC
* * *
32806688 CTCTAAGGGT-AAAATTACAGTAATACCC-CTAAGGGTAAAAT
1 CTCGAA-GGTAAAAATTACA-AAATACCCTCGAAGGGTAAAAT
32806729 GATCTTTATA
Statistics
Matches: 153, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
132 6 0.04
133 102 0.67
134 16 0.10
135 6 0.04
136 23 0.15
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.24
Consensus pattern (131 bp):
CTCGAAGGTAAAAATTACAAAATACCCTCGAAGGGTAAAATTACAGAAATACCCTCGAAGGGTAA
AATTACCAAAATACCCATAAAGGGTAAAATTATCGAAATACTCGAAGGCTAAAATTACTAAAATA
C
Found at i:32813937 original size:27 final size:27
Alignment explanation
Indices: 32813896--32814250 Score: 408
Period size: 27 Copynumber: 13.2 Consensus size: 27
32813886 GAATCATGGA
* *
32813896 TAAAATGACTGAAATACCCTCGAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
* ** *
32813923 AAAAATTACTAAAATACCCTCAAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
* *
32813950 T-AAATTACCAAAATACCCTCAAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
* * *
32813976 TAAAATTACCAAAATACCATCAAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
** *
32814003 TAAAATTACTAAAATACCCTTGAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
32814030 TAAAATTACCGAAATACCCTCGAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
* *
32814057 TAAAAATACCGAAATACCCTCAAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
* **
32814084 TAAAGTTATTGAAATACCCTCGAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
* * *
32814111 TAAAATTACCGAAACACTCTTGAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
* *
32814138 TAAAATTACCAAAATACCCTCGAAAGG
1 TAAAATTACCGAAATACCCTCGAAGGG
* * *
32814165 TAAAATTATCAAAATACCCTTGAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
** *
32814192 TAAAATTACCGAAATATGCTCAAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
* *
32814219 TAAAATTACTGAAATACCC-CTAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
32814245 TAAAAT
1 TAAAAT
32814251 GATCTTTATA
Statistics
Matches: 282, Mismatches: 45, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
26 37 0.13
27 245 0.87
ACGTcount: A:0.45, C:0.18, G:0.15, T:0.21
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGAAGGG
Found at i:32814493 original size:26 final size:26
Alignment explanation
Indices: 32814445--32814495 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
32814435 GCGACGTATA
*
32814445 CTATTACTAGCAGCTTTGCTGCGATT
1 CTATTACTAGCAGCTTTACTGCGATT
* * *
32814471 CTATTACTGGCAGTTTTATTGCGAT
1 CTATTACTAGCAGCTTTACTGCGAT
32814496 ATTGGTGTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41
Consensus pattern (26 bp):
CTATTACTAGCAGCTTTACTGCGATT
Found at i:32818325 original size:19 final size:19
Alignment explanation
Indices: 32818294--32818331 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32818284 AAAAAATTGG
*
32818294 TAAATAATATTTTATAAAA
1 TAAATAATATTTTAGAAAA
32818313 TAAA-AATATTTTTAGAAAA
1 TAAATAATA-TTTTAGAAAA
32818332 ATTAATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (19 bp):
TAAATAATATTTTAGAAAA
Found at i:32821101 original size:13 final size:13
Alignment explanation
Indices: 32821085--32821109 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32821075 AATCGGGCTC
32821085 ATAAATATTTATT
1 ATAAATATTTATT
32821098 ATAAATATTTAT
1 ATAAATATTTAT
32821110 GAGTTACTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATAAATATTTATT
Found at i:32840862 original size:21 final size:21
Alignment explanation
Indices: 32840838--32840880 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
32840828 GTTGTTGAGA
*
32840838 AGGAAGTTGTTACTGCAGAAG
1 AGGAAGTTGTTACTGAAGAAG
*
32840859 AGGAAGTTGTTGCTGAAGAAG
1 AGGAAGTTGTTACTGAAGAAG
32840880 A
1 A
32840881 AAAAATTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (21 bp):
AGGAAGTTGTTACTGAAGAAG
Found at i:32853591 original size:25 final size:24
Alignment explanation
Indices: 32853547--32853665 Score: 118
Period size: 25 Copynumber: 4.8 Consensus size: 24
32853537 TAGGGATTAT
*
32853547 CGATTGCAGCTCGTGA-GAGCTTAC
1 CGATTTCAGCTCGT-ATGAGCTTAC
* * *
32853571 CGATTCTTAGCTTGTATGAGCTTAT
1 CGATT-TCAGCTCGTATGAGCTTAC
32853596 CGATTTCAGCTCAAG-A-GAGCTTAC
1 CGATTTCAGCTC--GTATGAGCTTAC
*
32853620 CGATTTTGAGCTCGTATGAGCTTAC
1 CGA-TTTCAGCTCGTATGAGCTTAC
32853645 CGATTCTCAGCTCGTATGAGC
1 CGATT-TCAGCTCGTATGAGC
32853666 ATACTTTGGG
Statistics
Matches: 78, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
23 1 0.01
24 24 0.31
25 52 0.67
26 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.32
Consensus pattern (24 bp):
CGATTTCAGCTCGTATGAGCTTAC
Found at i:32853615 original size:49 final size:49
Alignment explanation
Indices: 32853543--32853657 Score: 160
Period size: 49 Copynumber: 2.3 Consensus size: 49
32853533 TCATTAGGGA
* ** *
32853543 TTATCGATTGCAGCTCGTGAGAGCTTACCGATTCTT-AGCTTGTATGAGC
1 TTATCGATTTCAGCTCAAGAGAGCTTACCGATT-TTGAGCTCGTATGAGC
32853592 TTATCGATTTCAGCTCAAGAGAGCTTACCGATTTTGAGCTCGTATGAGC
1 TTATCGATTTCAGCTCAAGAGAGCTTACCGATTTTGAGCTCGTATGAGC
*
32853641 TTACCGATTCTCAGCTC
1 TTATCGATT-TCAGCTC
32853658 GTATGAGCAT
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
48 2 0.03
49 50 0.85
50 7 0.12
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (49 bp):
TTATCGATTTCAGCTCAAGAGAGCTTACCGATTTTGAGCTCGTATGAGC
Found at i:32861227 original size:42 final size:42
Alignment explanation
Indices: 32861125--32861317 Score: 237
Period size: 42 Copynumber: 4.6 Consensus size: 42
32861115 TAACCGTTAC
* * * * *
32861125 TCGGTGGAATCAGCACTTAGCAACCACC-TTATATTTAGTGAT
1 TCGG-GGAATCAGCACTTAGCAACCACCTTTAGAATCAATAAT
*
32861167 ACGGGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAAT
1 TCGGGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAAT
* * **
32861209 TCGGGGAATCAGCACTTAGCAACC-CCTCTCACAATCAAGGAT
1 TCGGGGAATCAGCACTTAGCAACCACCT-TTAGAATCAATAAT
* *
32861251 ACGGTGGAATCAGCACTTAGCAACCACCTTTAGAATCAACAAT
1 TCGG-GGAATCAGCACTTAGCAACCACCTTTAGAATCAATAAT
32861294 TCGGGGAATCAGCACTTAGCAACC
1 TCGGGGAATCAGCACTTAGCAACC
32861318 CCTCGGGGAA
Statistics
Matches: 130, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
41 26 0.20
42 68 0.52
43 33 0.25
44 3 0.02
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (42 bp):
TCGGGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAAT
Found at i:32861275 original size:85 final size:83
Alignment explanation
Indices: 32861125--32861321 Score: 299
Period size: 85 Copynumber: 2.3 Consensus size: 83
32861115 TAACCGTTAC
* **
32861125 TCGGTGGAATCAGCACTTAGCAACCACCT-TATATTTAGTGATACGGGGAATCAGCACTTAGCAA
1 TCGG-GGAATCAGCACTTAGCAACC-CCTCTAAATCAAGTGATACGGGGAATCAGCACTTAGCAA
*
32861189 CCACCTTTAGAATCAATAAT
64 CCACCTTTAGAATCAACAAT
32861209 TCGGGGAATCAGCACTTAGCAACCCCTCTCACAATCAAG-GATACGGTGGAATCAGCACTTAGCA
1 TCGGGGAATCAGCACTTAGCAACCCCTCT-A-AATCAAGTGATACGG-GGAATCAGCACTTAGCA
32861273 ACCACCTTTAGAATCAACAAT
63 ACCACCTTTAGAATCAACAAT
32861294 TCGGGGAATCAGCACTTAGCAACCCCTC
1 TCGGGGAATCAGCACTTAGCAACCCCTC
32861322 GGGGAATCTG
Statistics
Matches: 105, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
82 3 0.03
83 21 0.20
84 12 0.11
85 69 0.66
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.22
Consensus pattern (83 bp):
TCGGGGAATCAGCACTTAGCAACCCCTCTAAATCAAGTGATACGGGGAATCAGCACTTAGCAACC
ACCTTTAGAATCAACAAT
Found at i:32861323 original size:26 final size:26
Alignment explanation
Indices: 32861294--32861346 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32861284 AATCAACAAT
32861294 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACTTAGCAACCCC
*
32861320 TCGGGGAATCTGCACTTAGCAACCCC
1 TCGGGGAATCAGCACTTAGCAACCCC
32861346 T
1 T
32861347 TTTACAGTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.34, G:0.23, T:0.19
Consensus pattern (26 bp):
TCGGGGAATCAGCACTTAGCAACCCC
Found at i:32874943 original size:26 final size:26
Alignment explanation
Indices: 32874909--32875015 Score: 144
Period size: 26 Copynumber: 4.1 Consensus size: 26
32874899 AACACACCAA
*
32874909 TATCACAGCAAAGCTGCCAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTATCAG
* *
32874935 TAACGCAGCAAAGCTGCTAGTAAT-AG
1 TATCGCAGCAAAGCTGCCAGT-ATCAG
* *
32874961 TATCGCAGCAAAGCCGCCAGTATCAA
1 TATCGCAGCAAAGCTGCCAGTATCAG
*
32874987 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTATCAG
32875013 TAT
1 TAT
32875016 TTGTGGCAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
25 2 0.03
26 65 0.94
27 2 0.03
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTATCAG
Found at i:32874994 original size:52 final size:52
Alignment explanation
Indices: 32874909--32875015 Score: 160
Period size: 52 Copynumber: 2.1 Consensus size: 52
32874899 AACACACCAA
* * * *
32874909 TATCACAGCAAAGCTGCCAGTATCAGTAACGCAGCAAAGCTGCTAGTAATAG
1 TATCACAGCAAAGCCGCCAGTATCAATAACGCAGCAAAGCTGCCAGTAACAG
* *
32874961 TATCGCAGCAAAGCCGCCAGTATCAATATCGCAGCAAAGCTGCCAGTAACAG
1 TATCACAGCAAAGCCGCCAGTATCAATAACGCAGCAAAGCTGCCAGTAACAG
32875013 TAT
1 TAT
32875016 TTGTGGCAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.19
Consensus pattern (52 bp):
TATCACAGCAAAGCCGCCAGTATCAATAACGCAGCAAAGCTGCCAGTAACAG
Found at i:32875040 original size:52 final size:52
Alignment explanation
Indices: 32874909--32875040 Score: 131
Period size: 52 Copynumber: 2.5 Consensus size: 52
32874899 AACACACCAA
* ** * * * * *
32874909 TATCACAGCAAAGCTGCCAGTATCAGTAACGCAGCAAAGCTGCTAGTAATAG
1 TATCGCAGCAAAGCCACCAGTAACAATATCGCAGCAAAGCTGCCAGTAACAG
* *
32874961 TATCGCAGCAAAGCCGCCAGTATCAATATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCCACCAGTAACAATATCGCAGCAAAGCTGCCAGTAACAG
* **
32875013 TATTTGTGGCAAAGCCACCAG-AACAATA
1 TA-TCGCAGCAAAGCCACCAGTAACAATA
32875041 CACTTCCGCT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
52 54 0.79
53 14 0.21
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.18
Consensus pattern (52 bp):
TATCGCAGCAAAGCCACCAGTAACAATATCGCAGCAAAGCTGCCAGTAACAG
Found at i:32875516 original size:27 final size:27
Alignment explanation
Indices: 32875210--32875515 Score: 319
Period size: 27 Copynumber: 11.3 Consensus size: 27
32875200 TACAAAGGTC
*
32875210 ATTTTACCCCTCCG-GGGTATTTCGGTA
1 ATTTTA-CCCTTCGAGGGTATTTCGGTA
* * *
32875237 ATTTTACCCTTCGGGGGCATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
32875264 ATTTTACCATTCGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * ** **
32875291 ATTTTTCCTTTTAAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * *
32875318 ATTTTACCTTTTGAGTGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
** *
32875345 ATTTTACCCTTTAAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
*
32875372 ATTTTACCCTTCAAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
32875399 ATTTTTCCCATCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
** *
32875426 ATTTTATTCTTC-AGGGGTATTTCGATA
1 ATTTTACCCTTCGA-GGGTATTTCGGTA
* *
32875453 ATTTTACCCTTTGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* **
32875480 ATTTTACCCATCGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
32875507 ATTTTACCC
1 ATTTTACCC
32875516 ACGAATCACA
Statistics
Matches: 238, Mismatches: 38, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
26 7 0.03
27 230 0.97
28 1 0.00
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGGTA
Found at i:32882560 original size:28 final size:28
Alignment explanation
Indices: 32882521--32882575 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
32882511 CAATAGCAGT
* *
32882521 GTGTGGGCCTTAGCCCAAAACAGTAATA
1 GTGTGGACCTTAGCACAAAACAGTAATA
32882549 GTGTGGACCTTAGCACAAAACAGTAAT
1 GTGTGGACCTTAGCACAAAACAGTAAT
32882576 CAATAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (28 bp):
GTGTGGACCTTAGCACAAAACAGTAATA
Found at i:32882746 original size:26 final size:26
Alignment explanation
Indices: 32882717--32882789 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
32882707 AGTAGCGCAA
*
32882717 CAGAGCTGCCAGTAATAGTATCA-TAG
1 CAGAGCTACCAGTAATAGTATCACT-G
32882743 CAGAGCTACCAGT-ATCAGTATCACTG
1 CAGAGCTACCAGTAAT-AGTATCACTG
* * *
32882769 CAAAACTTCCAGTAATAGTAT
1 CAGAGCTACCAGTAATAGTAT
32882790 TTGTGGCAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 2 0.05
26 35 0.88
27 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.25
Consensus pattern (26 bp):
CAGAGCTACCAGTAATAGTATCACTG
Found at i:32883036 original size:27 final size:27
Alignment explanation
Indices: 32882983--32883233 Score: 229
Period size: 27 Copynumber: 9.3 Consensus size: 27
32882973 TATAACGATC
* **
32882983 ATTTTACCCTTTG-GGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
32883009 ATTTTACCGTTC-AGTGGCATTTCGGTA
1 ATTTTACCCTTCGAG-GGTATTTCGGTA
*
32883036 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
32883063 ATTTTACCCTTCGAGGGTACTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * *
32883090 ATTTTACCCATCAAGGGTATTTCAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * * * *
32883117 ATTTTACCTTTTGGGGGTCTTTCAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
32883144 ATTTTACCCTTTGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* ** *
32883171 ATTTTACCTTTTAAGGATATATT-GGTA
1 ATTTTACCCTTCGAGGGTAT-TTCGGTA
* * * *
32883198 ATTTTACCCATCAAGGGTATTTCAGTG
1 ATTTTACCCTTCGAGGGTATTTCGGTA
32883225 ATTTTACCC
1 ATTTTACCC
32883234 ACAAATCACA
Statistics
Matches: 185, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
26 13 0.07
27 168 0.91
28 4 0.02
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGGTA
Found at i:32883112 original size:81 final size:81
Alignment explanation
Indices: 32883027--32883233 Score: 256
Period size: 81 Copynumber: 2.6 Consensus size: 81
32883017 GTTCAGTGGC
32883027 ATTTCGGTAATTTTACCCTTCGAGGGTATTTC-GATAATTTTACCCTTCGAGGGTACTTCGATAA
1 ATTTCGGTAATTTTACCCTTCGAGGGTATTTCAG-TAATTTTACCCTTCGAGGGTACTTCGATAA
*
32883091 TTTTACCCATCAAGGGT
65 TTTTACCCATCAAGGAT
* * * * * * *
32883108 ATTTCAGTAATTTTACCTTTTGGGGGTCTTTCAGTAATTTTACCCTTTGAGGGTATTTCGATAAT
1 ATTTCGGTAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTCGAGGGTACTTCGATAAT
** *
32883173 TTTACCTTTTAAGGAT
66 TTTACCCATCAAGGAT
* * *
32883189 ATATT-GGTAATTTTACCCATCAAGGGTATTTCAGTGATTTTACCC
1 AT-TTCGGTAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCC
32883234 ACAAATCACA
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
81 102 0.97
82 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.42
Consensus pattern (81 bp):
ATTTCGGTAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTCGAGGGTACTTCGATAAT
TTTACCCATCAAGGAT
Found at i:32888921 original size:19 final size:19
Alignment explanation
Indices: 32888897--32888935 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
32888887 AATTTCATAA
*
32888897 ATTATACCATAAGTTTATC
1 ATTATACCATAAATTTATC
32888916 ATTATACCATAAATTTATC
1 ATTATACCATAAATTTATC
32888935 A
1 A
32888936 CATTTTTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (19 bp):
ATTATACCATAAATTTATC
Found at i:32920736 original size:3 final size:3
Alignment explanation
Indices: 32920722--32920776 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
32920712 GTTTTTTAGT
*
32920722 TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32920770 TTA TTA T
1 TTA TTA T
32920777 CATCATACTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:32920933 original size:39 final size:42
Alignment explanation
Indices: 32920855--32920933 Score: 94
Period size: 41 Copynumber: 2.0 Consensus size: 42
32920845 AACATATACA
**
32920855 TATATTATATATATATATTATTATTATTATTATTTTATTTTG
1 TATATTATATATATATATTATTATTATTATTATAATATTTTG
*
32920897 TATA-TATATGTATATATGT-TTA-TATT-TTATAATATTT
1 TATATTATATATATATAT-TATTATTATTATTATAATATTT
32920934 ATACATTTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
39 9 0.27
40 4 0.12
41 15 0.45
42 5 0.15
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (42 bp):
TATATTATATATATATATTATTATTATTATTATAATATTTTG
Found at i:32924976 original size:19 final size:20
Alignment explanation
Indices: 32924937--32924977 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
32924927 TACAACACAA
* *
32924937 TTCAATTTTATATTGAATAT
1 TTCAATTTTATACTCAATAT
32924957 TTCAATTTT-TACTCAATAT
1 TTCAATTTTATACTCAATAT
32924976 TT
1 TT
32924978 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTTATACTCAATAT
Found at i:32925407 original size:10 final size:10
Alignment explanation
Indices: 32925382--32925421 Score: 66
Period size: 10 Copynumber: 4.2 Consensus size: 10
32925372 AGGCCATGTT
32925382 TTTTTCTTTC
1 TTTTTCTTTC
32925392 --TTTCTTTC
1 TTTTTCTTTC
32925400 TTTTTCTTTC
1 TTTTTCTTTC
32925410 TTTTTCTTTC
1 TTTTTCTTTC
32925420 TT
1 TT
32925422 CTTTTTAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.29
10 20 0.71
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:32925407 original size:14 final size:14
Alignment explanation
Indices: 32925382--32925427 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
32925372 AGGCCATGTT
32925382 TTTTTCTTTCTTTC
1 TTTTTCTTTCTTTC
32925396 TTTCTT-TTTCTTTC
1 TTT-TTCTTTCTTTC
32925410 TTTTTCTTTC-TTC
1 TTTTTCTTTCTTTC
32925423 TTTTT
1 TTTTT
32925428 AATATACTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
13 10 0.33
14 18 0.60
15 2 0.07
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTCTTTCTTTC
Found at i:32936033 original size:29 final size:29
Alignment explanation
Indices: 32935991--32936056 Score: 132
Period size: 29 Copynumber: 2.3 Consensus size: 29
32935981 GACATCCCTT
32935991 GAGCACATATCATACAAGTATTGACTTTG
1 GAGCACATATCATACAAGTATTGACTTTG
32936020 GAGCACATATCATACAAGTATTGACTTTG
1 GAGCACATATCATACAAGTATTGACTTTG
32936049 GAGCACAT
1 GAGCACAT
32936057 GACTAGGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (29 bp):
GAGCACATATCATACAAGTATTGACTTTG
Found at i:32938851 original size:14 final size:14
Alignment explanation
Indices: 32938825--32938854 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
32938815 GTATTCGGCC
32938825 AAGGGAAGAAAAAT
1 AAGGGAAGAAAAAT
32938839 AAGGAGAAGAAAAAT
1 AAGG-GAAGAAAAAT
32938854 A
1 A
32938855 TTTCTTCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.07
Consensus pattern (14 bp):
AAGGGAAGAAAAAT
Found at i:32940451 original size:12 final size:11
Alignment explanation
Indices: 32940419--32940453 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
32940409 AGTCTAAATC
32940419 AAAATCATTCA
1 AAAATCATTCA
32940430 AAAATCATTCA
1 AAAATCATTCA
32940441 AAAATCAATTCA
1 AAAATC-ATTCA
32940453 A
1 A
32940454 TTATTTTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 17 0.74
12 6 0.26
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAATCATTCA
Found at i:32946826 original size:33 final size:32
Alignment explanation
Indices: 32946783--32946872 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 32
32946773 AATCAGTCTA
*
32946783 GGCCTGAGCCCTATATAGTATCAATACAGTGTG
1 GGCCTTAGCCC-ATATAGTATCAATACAGTGTG
*
32946816 GGCCTTAGCCC--AT--TA-CAGTAACAGTGTG
1 GGCCTTAGCCCATATAGTATCAAT-ACAGTGTG
*
32946844 GGCCTTAGCCCAATACAGTAATCAATACA
1 GGCCTTAGCCC-ATATAGT-ATCAATACA
32946873 ATGCAGCAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 15
0.70 0.06 0.23
Matches are distributed among these distances:
27 3 0.07
28 21 0.47
30 2 0.04
31 1 0.02
33 11 0.24
34 4 0.09
35 3 0.07
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (32 bp):
GGCCTTAGCCCATATAGTATCAATACAGTGTG
Found at i:32946848 original size:28 final size:28
Alignment explanation
Indices: 32946808--32946864 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
32946798 TAGTATCAAT
*
32946808 ACAGTGTGGGCCTTAGCCCATTACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
32946836 ACAGTGTGGGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
32946864 A
1 A
32946865 TCAATACAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:32947003 original size:26 final size:26
Alignment explanation
Indices: 32946974--32947049 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 26
32946964 CACCAATATC
* * *
32946974 GCAGTAAAGCTGCCAGTAATAGTGAT
1 GCAGCAAAGCTGCCAGTAACAGTAAT
32947000 GCAGCAAAGCTGCCAGTAACAGTAAT
1 GCAGCAAAGCTGCCAGTAACAGTAAT
*
32947026 GCAGCAAAGCTACCAGTAACAGTA
1 GCAGCAAAGCTGCCAGTAACAGTA
32947050 TATGTGGCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTAACAGTAAT
Found at i:32947070 original size:27 final size:26
Alignment explanation
Indices: 32946988--32947070 Score: 76
Period size: 26 Copynumber: 3.2 Consensus size: 26
32946978 TAAAGCTGCC
* * ** *
32946988 AGTAATAGTGATGCAGCAAAGCTGCC
1 AGTAACAGTAATGCAGCAAAGCCACA
* *
32947014 AGTAACAGTAATGCAGCAAAGCTACC
1 AGTAACAGTAATGCAGCAAAGCCACA
**
32947040 AGTAACAGTATATGTGGCAAAGCCACA
1 AGTAACAGTA-ATGCAGCAAAGCCACA
32947067 AGTA
1 AGTA
32947071 TAGTATACTT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 33 0.67
27 16 0.33
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.18
Consensus pattern (26 bp):
AGTAACAGTAATGCAGCAAAGCCACA
Found at i:32947256 original size:27 final size:27
Alignment explanation
Indices: 32947226--32947382 Score: 219
Period size: 27 Copynumber: 5.9 Consensus size: 27
32947216 TATAACAGTC
* *
32947226 ATTTTACCCTTCGAGGGCAATTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
32947253 ATTTTACCCTTTGAGGGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* *
32947280 ATTTTA-CCTTTGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
32947306 ATTTTACCCTTCAAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
32947333 ATTTTACCCTTCGAGGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
32947360 ATTTTACCCTTCGAGGGTATTTC
1 ATTTTACCCTTCGAGGGTATTTC
32947383 AGTTATTTGC
Statistics
Matches: 116, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
26 25 0.22
27 91 0.78
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:32947349 original size:80 final size:81
Alignment explanation
Indices: 32947226--32947383 Score: 230
Period size: 80 Copynumber: 2.0 Consensus size: 81
32947216 TATAACAGTC
* *
32947226 ATTTTACCCTTCGAGGGCAATTCGATAATTTTACCCTTTGAGGGTATTTCAG-TAATTTTA-CCT
1 ATTTTACCCTTCAAGGGCAATTCGATAATTTTACCCTTCGAGGGTATTT-AGATAATTTTACCCT
*
32947289 TTGAGGGTATTTCAATA
65 TCGAGGGTATTTCAATA
* * * *
32947306 ATTTTACCCTTCAAGGGTATTTCGGTAATTTTACCCTTCGAGGGTATTTTGATAATTTTACCCTT
1 ATTTTACCCTTCAAGGGCAATTCGATAATTTTACCCTTCGAGGGTATTTAGATAATTTTACCCTT
32947371 CGAGGGTATTTCA
66 CGAGGGTATTTCA
32947384 GTTATTTGCG
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
79 1 0.01
80 52 0.75
81 16 0.23
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (81 bp):
ATTTTACCCTTCAAGGGCAATTCGATAATTTTACCCTTCGAGGGTATTTAGATAATTTTACCCTT
CGAGGGTATTTCAATA
Found at i:32947369 original size:54 final size:54
Alignment explanation
Indices: 32947221--32947390 Score: 243
Period size: 54 Copynumber: 3.2 Consensus size: 54
32947211 AGGGGTATAA
* * * *
32947221 CAGTCATTTTACCCTTCGAGGGCAATTCGATAATTTTACCCTTTGAGGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTT
* * *
32947275 CAGTAATTTTA-CCTTTGAGGGTATTTCAATAATTTTACCCTTCAAGGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTT
* *
32947328 CGGTAATTTTACCCTTCGAGGGTATTTTGATAATTTTACCCTTCGAGGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTT
*
32947382 CAGTTATTT
1 CAGTAATTT
32947391 GCGGTCCATT
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 46 0.46
54 55 0.54
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (54 bp):
CAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTT
Found at i:32952880 original size:16 final size:16
Alignment explanation
Indices: 32952855--32952885 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32952845 AAATAAATAA
32952855 ATTCAATCTATTTAAT
1 ATTCAATCTATTTAAT
*
32952871 ATTCATTCTATTTAA
1 ATTCAATCTATTTAA
32952886 CTCAGTCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTCAATCTATTTAAT
Found at i:32965396 original size:307 final size:307
Alignment explanation
Indices: 32964842--32965986 Score: 2119
Period size: 307 Copynumber: 3.7 Consensus size: 307
32964832 GAAAATTGTC
*
32964842 AATTATTTACTCTTAGGGAAGAATTGGTTATCATGGGTTTAAGTTAAAATGGTTAAATTTAAAGT
1 AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTAAATTTAAAGT
*
32964907 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATAATTTTGTAATTTCATGAT
66 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATAATTTTGTAATTTCATGAA
* *
32964972 AATATGAATTATGGATTGAATTGAATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTAT
131 AATATGAATTATAGAGTGAATTGAATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTAT
32965037 TTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGT
196 TTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGT
32965102 CTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
261 CTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
*
32965149 AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGT
1 AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTAAATTTAAAGT
32965214 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATAATTTTGTAATTTCATGAA
66 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATAATTTTGTAATTTCATGAA
*
32965279 AATATGAATTATAGAGTGAATTGGATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTAT
131 AATATGAATTATAGAGTGAATTGAATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTAT
32965344 TTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGT
196 TTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGT
* *
32965409 CTCCAACTCTACTTTTACGACTTTAGTTATCGAGGTAAGTTCGTATG
261 CTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
* * *
32965456 AATTATTTACCCTTAGGGAAGAATCGATTATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGT
1 AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTAAATTTAAAGT
32965521 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATAATTTTGTAATTTCATGAA
66 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATAATTTTGTAATTTCATGAA
*
32965586 AATATGAATTATAGAGTGAATTGAATACTTGATGTTATTTGAAGTACTTAATTGAATGAAATTAT
131 AATATGAATTATAGAGTGAATTGAATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTAT
* * *
32965651 TTATTTGGATCAAGATAAGCAACAACTGGGCTTAAATCTGGGAAAAATAAAAGCTTTGGATTAGT
196 TTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGT
32965716 CTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
261 CTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
*
32965763 AATTATTTACTCTTAGGGAAGAATCGGTTCTCATGGGTTTAAGTTAAAATGGTTAAATTTAAAGT
1 AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTAAATTTAAAGT
* *
32965828 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGAATAATTTTGTAATTTCATGAT
66 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATAATTTTGTAATTTCATGAA
*
32965893 AATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTAT
131 AATATGAATTATAGAGTGAATTGAATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTAT
32965958 TTATTTAGATCAAGATAAGCAACAACTGG
196 TTATTTAGATCAAGATAAGCAACAACTGG
32965987 NNNNNNNNNN
Statistics
Matches: 812, Mismatches: 26, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
307 812 1.00
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.35
Consensus pattern (307 bp):
AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTAAATTTAAAGT
TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATAATTTTGTAATTTCATGAA
AATATGAATTATAGAGTGAATTGAATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTAT
TTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGT
CTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
Found at i:32968851 original size:307 final size:307
Alignment explanation
Indices: 32968287--32969445 Score: 2133
Period size: 307 Copynumber: 3.8 Consensus size: 307
32968277 CCGAGACCTC
* *
32968287 GACTT-AATCCGGGAAAAATAAAAGCTTTGGATTAGTCTCCATCTCTACTTTTGCGACTATAGTT
1 GACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTT
*
32968351 ATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGTAGAATCGGTTATCATGGGTTTAAGTTA
66 ATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTA
32968416 AAATGGTTAAATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGAT
131 AAATGGTTAAATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGAT
*
32968481 AATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGCTATTTGAAGTA
196 AATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTA
*
32968546 CTTAGTTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTG
261 CTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTG
32968593 GACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTT
1 GACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTT
* *
32968658 ATCGAAGTAAGTTCGTGTGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTA
66 ATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTA
* *
32968723 AAATCGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGAT
131 AAATGGTTAAATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGAT
32968788 AATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTA
196 AATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTA
32968853 CTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTG
261 CTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTG
*
32968900 GATTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTT
1 GACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTT
*
32968965 ATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTGTCATGGGTTTAAGTTA
66 ATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTA
32969030 AAATGGTTAAATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGAT
131 AAATGGTTAAATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGAT
32969095 AATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTA
196 AATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTA
32969160 CTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTG
261 CTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTG
* * *
32969207 GGCTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTACGACTTTAGTT
1 GACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTT
*
32969272 ATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGAGAAGAATCGGTTATCATGGGTTTAAGTTA
66 ATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTA
32969337 AAATGGTTAAATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGAT
131 AAATGGTTAAATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGAT
32969402 AATTTTGTAA-TTCATGACTAAGTATGAATTAGTAGAGTTGAATT
196 AATTTTGTAATTTCATGA-TAA-TATGAATTA-TAGA-TTGAATT
32969446 NNNNNNNNNN
Statistics
Matches: 827, Mismatches: 21, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
306 12 0.01
307 795 0.96
308 9 0.01
309 4 0.00
310 7 0.01
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (307 bp):
GACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTT
ATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTA
AAATGGTTAAATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGAT
AATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTA
CTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTG
Found at i:32973380 original size:307 final size:307
Alignment explanation
Indices: 32972826--32973399 Score: 1049
Period size: 307 Copynumber: 1.9 Consensus size: 307
32972816 NNNNNNNNNN
* *
32972826 AACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGGGA
1 AACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGAGTAGTCTCCAACTCTACTTTTGCGA
*
32972891 CTATAGTTATCGAGATAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGT
66 CTATAGTTATAGAGATAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGT
32972956 TTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTAAAAATA
131 TTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTAAAAATA
*
32973021 GGAAGGATAATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGATTAT
196 GGAAGGATAATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTAAGATTAT
32973086 TTGAAGTACTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGC
261 TTGAAGTACTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGC
*
32973133 AACAACTGGACTTAATTCGGGGAAAAATAAAAGCTTTGGAGTAGTCTCCAACTCTACTTTTGCGA
1 AACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGAGTAGTCTCCAACTCTACTTTTGCGA
* *
32973198 CTATAGTTATAGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAGTCGGTTATCATGGGT
66 CTATAGTTATAGAGATAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGT
* *
32973263 TTAAGTTAAAATGGTTATATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATA
131 TTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTAAAAATA
* *
32973328 GGAAGGATAATTTTGTAATTTCGTGATAATATGAATTATAGATTGAATTGAATACTTAAGGTTAT
196 GGAAGGATAATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTAAGATTAT
32973393 TTGAAGT
261 TTGAAGT
32973400 NNNNNNNNNN
Statistics
Matches: 256, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
307 256 1.00
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (307 bp):
AACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGAGTAGTCTCCAACTCTACTTTTGCGA
CTATAGTTATAGAGATAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGT
TTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTAAAAATA
GGAAGGATAATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTAAGATTAT
TTGAAGTACTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGC
Found at i:32974132 original size:307 final size:307
Alignment explanation
Indices: 32973500--32974669 Score: 2198
Period size: 307 Copynumber: 3.8 Consensus size: 307
32973490 NNNNNNNNNN
32973500 ATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTAC
1 ATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTAC
* *
32973565 TTAATTGAATGAAATTATTTATTTATATCAAAATAAGCAACAACTGGACTTAAATCGGGGAAAAA
66 TTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAA
32973630 TAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCG-CTATAGTTATCGAGGTAAGTTCGTATG
131 TAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
*
32973694 AATTATTTACTCTTAGGGAAGAATCGTTTATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGT
196 AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGT
*
32973759 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAACGATA
261 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATA
*
32973806 ATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGGATACTTGAGGTTATTTGAAGTAC
1 ATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTAC
32973871 TTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAA
66 TTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAA
*
32973936 TAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGGGACTATAGTTATCGAGGTAAGTTCGTATG
131 TAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
32974001 AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGT
196 AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGT
32974066 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATA
261 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATA
*
32974113 ATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGGATACTTGAGGTTATTTGAAGTAC
1 ATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTAC
32974178 TTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAA
66 TTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAA
*
32974243 TAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGGGACTATAGTTATCGAGGTAAGTTCGTATG
131 TAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
* * *
32974308 AATTATTTACCCTTAGGGAAGAATCGATTATCATGGGTTTAAGTTAAAATGGTTAAATTTAAAGT
196 AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGT
32974373 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATA
261 TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATA
*
32974420 ATTTTGTAATTTCATGAGAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTAC
1 ATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTAC
* *
32974485 TTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTGGGCTTAAATCTGGGAAAAA
66 TTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAA
32974550 TAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
131 TAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
*
32974615 AATTATTTACTCTTAGGGAAGATTCGGTTATCATGGGTTTAAGTTAAAATGGTTA
196 AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTA
32974670 NNNNNNNNNN
Statistics
Matches: 846, Mismatches: 17, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
306 163 0.19
307 683 0.81
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.35
Consensus pattern (307 bp):
ATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGAAGTAC
TTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAA
TAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATG
AATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGT
TACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAAGGATA
Found at i:32975600 original size:307 final size:307
Alignment explanation
Indices: 32975042--32975853 Score: 1561
Period size: 307 Copynumber: 2.6 Consensus size: 307
32975032 NNNNNNNNNN
32975042 ACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGAC
1 ACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGAC
*
32975107 TATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAATAATCGGTTATCATGGGTT
66 TATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTT
32975172 TAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAG
131 TAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAG
*
32975237 GAAGGATAATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATT
196 GAAGGATAATTTTGTAATTACATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATT
32975302 TGAAGTACTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCA
261 TGAAGTACTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCA
*
32975349 ACAACTGGGCTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGAC
1 ACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGAC
*
32975414 TATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTCTCATGGGTT
66 TATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTT
*
32975479 TAAGTTAAAATGGTTAAATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAG
131 TAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAG
*
32975544 GAAGGATAATTTTGTAATTACATGATAATATGAATTATAGATTGAATTGGATACTTGAGGTTATT
196 GAAGGATAATTTTGTAATTACATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATT
32975609 TGAAGTACTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCA
261 TGAAGTACTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCA
*
32975656 ACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGGGAC
1 ACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGAC
32975721 TATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTT
66 TATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTT
32975786 TAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAG
131 TAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAG
32975851 GAA
196 GAA
32975854 CGANNNNNNN
Statistics
Matches: 495, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
307 495 1.00
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (307 bp):
ACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGAC
TATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTT
TAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAG
GAAGGATAATTTTGTAATTACATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATT
TGAAGTACTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCA
Found at i:32977993 original size:306 final size:307
Alignment explanation
Indices: 32977433--32978469 Score: 1698
Period size: 306 Copynumber: 3.4 Consensus size: 307
32977423 NNNNNNNNNN
32977433 GTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAA
1 GTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAA
*
32977498 GGATAATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGAATACTTGAGGTTATTTGA
66 GGATAATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGGATACTTGAGGTTATTTGA
* * * *
32977563 AGTACTTAATTGAATGAAATTATTTATTTATATCAA-AATAAGCAACAACTGGCCTTAATTCGTG
131 AGTACTTAATTGAATGAAATTATTTATTTAGATCAAGAA-AAGCAACAACTGGACTTAAATCGCG
* * * *
32977627 GAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTAATTTTTCGACCATAGTTGTCGAGGTAAGTT
195 GAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTT
32977692 CGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAA
260 CGTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAA
*
32977740 GTTAAAATGGTTACATTTAAAGTTACGAGCATAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAA
1 GTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAA
32977805 GGATAATTTTGTAATTTCATGATAATATGAATTATAGATT-AATTGGATACTTGAGGTTATTTGA
66 GGATAATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGGATACTTGAGGTTATTTGA
* *
32977869 TGTACTTAATTGAATGAAATTATTTATTTAGATCAAGAAAAGCAACAACTGGGCTTAAATCGCGG
131 AGTACTTAATTGAATGAAATTATTTATTTAGATCAAGAAAAGCAACAACTGGACTTAAATCGCGG
32977934 AAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTC
196 AAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTC
* * *
32977999 GTATGAATTATTTACACTTAGGGAATAATCGGTTCTCATGGGTTTAA
261 GTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAA
*
32978046 GTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGAAA
1 GTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAA
32978111 GGATAA-----T--TTTC--G----TA--AA-TATAGATTGAATTGGATACTTGAGGTTATTTGA
66 GGATAATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGGATACTTGAGGTTATTTGA
* *
32978160 AGTACTTAATTGAATGAAATTATTTATTTAGATCAAGATAAGCAACAACTGGACTTAAATCGGGG
131 AGTACTTAATTGAATGAAATTATTTATTTAGATCAAGAAAAGCAACAACTGGACTTAAATCGCGG
*
32978225 AAAAATAAAAGCTTTGGGTTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTC
196 AAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTC
* *
32978290 GTATTAATTATTTCCTCTTAGGGAAGAATCGGTTATCATGGGTTTAA
261 GTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAA
* * *
32978337 GTTAAAATGGTTACATTTAAAGTTACGAGTTTAAGGTCTAACTTGTGAAAAAGTTAAAATAGGAA
1 GTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAA
* *
32978402 GGATAATTTTGTAATTTAATGATAATATGAATTATAGATT-AATTGGGTACTTGAGGTTATTTGA
66 GGATAATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGGATACTTGAGGTTATTTGA
32978466 AGTA
131 AGTA
32978470 NNNNNNNNNN
Statistics
Matches: 680, Mismatches: 32, Indels: 37
0.91 0.04 0.05
Matches are distributed among these distances:
290 8 0.01
291 260 0.38
293 2 0.00
296 1 0.00
297 1 0.00
298 3 0.00
299 4 0.01
300 1 0.00
301 1 0.00
304 2 0.00
306 283 0.42
307 114 0.17
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.35
Consensus pattern (307 bp):
GTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAGTTAAAATAGGAA
GGATAATTTTGTAATTTCATGATAATATGAATTATAGATTGAATTGGATACTTGAGGTTATTTGA
AGTACTTAATTGAATGAAATTATTTATTTAGATCAAGAAAAGCAACAACTGGACTTAAATCGCGG
AAAAATAAAAGCTTTGGATTAGTCTCCAACTCTACTTTTGCGACTATAGTTATCGAGGTAAGTTC
GTATGAATTATTTACTCTTAGGGAAGAATCGGTTATCATGGGTTTAA
Found at i:32978385 original size:291 final size:289
Alignment explanation
Indices: 32977837--32978415 Score: 1014
Period size: 291 Copynumber: 2.0 Consensus size: 289
32977827 TAATATGAAT
*
32977837 TATAGATTAATTGGATACTTGAGGTTATTTGATGTACTTAATTGAATGAAATTATTTATTTAGAT
1 TATAGATTAATTGGATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTATTTATTTAGAT
*
32977902 CAAGAAAAGCAACAACTGGGCTTAAATCGCGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCT
66 CAAGAAAAGCAACAACTGGACTTAAATCGCGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCT
*
32977967 ACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATGAATTATTTACACTTAGGGAATAATCGGT
131 ACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATGAATTATTTACACTTAGGGAAGAATCGGT
* *
32978032 TCTCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAA
196 TATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAACTTGTGAAAA
32978097 AGTTAAAATAGAAAGGATAATTTTCGTAAA
261 AGTTAAAATAGAAAGGATAATTTT-GTAAA
32978127 TATAGATTGAATTGGATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTATTTATTTAGA
1 TATAGATT-AATTGGATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTATTTATTTAGA
* * *
32978192 TCAAGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGGTTAGTCTCCAACTC
65 TCAAGAAAAGCAACAACTGGACTTAAATCGCGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTC
* * *
32978257 TACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATTAATTATTTCCTCTTAGGGAAGAATCGG
130 TACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATGAATTATTTACACTTAGGGAAGAATCGG
* *
32978322 TTATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGTTTAAGGTCTAACTTGTGAAA
195 TTATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAACTTGTGAAA
*
32978387 AAGTTAAAATAGGAAGGATAATTTTGTAA
260 AAGTTAAAATAGAAAGGATAATTTTGTAA
32978416 TTTAATGATA
Statistics
Matches: 274, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
290 12 0.04
291 262 0.96
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.35
Consensus pattern (289 bp):
TATAGATTAATTGGATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTATTTATTTAGAT
CAAGAAAAGCAACAACTGGACTTAAATCGCGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCT
ACTTTTGCGACTATAGTTATCGAGGTAAGTTCGTATGAATTATTTACACTTAGGGAAGAATCGGT
TATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAACTTGTGAAAA
AGTTAAAATAGAAAGGATAATTTTGTAAA
Found at i:32981151 original size:307 final size:307
Alignment explanation
Indices: 32980592--32981441 Score: 1562
Period size: 307 Copynumber: 2.8 Consensus size: 307
32980582 NNNNNNNNNN
32980592 AGATT-AATTGGATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTATTTATTTAGATCA
1 AGATTGAATTGGATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTATTTATTTAGATCA
* * *
32980656 AAATAATCAAAAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTA-ATCTCCAACTCTA
66 AGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGA-CTCCAACTCTA
* *
32980720 CTTTTGCGACTACAGTT-GCTGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGT
130 CTTTTGCGACTATAGTTATC-GAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGT
*
32980784 TCTCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAA
194 TATCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAA
*
32980849 AGTTAAAATAGGAAGGATAATTTTGTAATTTCATGATAATATGAATTAT
259 AGTTAAAATAGGAAGGATAATTTTGTAATTTCATGAAAATATGAATTAT
* *
32980898 AGATTGAATTGGAGACTTGAGGTTATTTGATGTACTTAATTGAATGAAATTATTTATTTAGATCA
1 AGATTGAATTGGATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTATTTATTTAGATCA
*
32980963 AGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTAGGATTAGACTCCAACTCTAC
66 AGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGACTCCAACTCTAC
32981028 TTTTGCGACTATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTA
131 TTTTGCGACTATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTA
32981093 TCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAG
196 TCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAG
32981158 TTAAAATAGGAAGGATAATTTTGTAATTTCATGAAAATATGAATTAT
261 TTAAAATAGGAAGGATAATTTTGTAATTTCATGAAAATATGAATTAT
32981205 AGATTGAATTGGATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTATTTATTTAGATCA
1 AGATTGAATTGGATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTATTTATTTAGATCA
*
32981270 AGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGTCTCCAACTCTAC
66 AGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGACTCCAACTCTAC
32981335 TTTTGCGACTATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTA
131 TTTTGCGACTATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTA
32981400 TCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGC
196 TCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGC
32981442 ANNNNNNNNN
Statistics
Matches: 527, Mismatches: 14, Indels: 5
0.97 0.03 0.01
Matches are distributed among these distances:
306 5 0.01
307 520 0.99
308 2 0.00
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (307 bp):
AGATTGAATTGGATACTTGAGGTTATTTGAAGTACTTAATTGAATGAAATTATTTATTTAGATCA
AGATAAGCAACAACTGGACTTAAATCGGGGAAAAATAAAAGCTTTGGATTAGACTCCAACTCTAC
TTTTGCGACTATAGTTATCGAGGTAAGTTCGTATGAATTATTTACTCTTAGGGAAGAATCGGTTA
TCATGGGTTTAAGTTAAAATGGTTACATTTAAAGTTACGAGCTTAAGGACTAAGTTGTGAAAAAG
TTAAAATAGGAAGGATAATTTTGTAATTTCATGAAAATATGAATTAT
Found at i:32984090 original size:14 final size:14
Alignment explanation
Indices: 32984071--32984098 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32984061 CTAATTTATT
32984071 AATGAAATATTAAA
1 AATGAAATATTAAA
32984085 AATGAAATATTAAA
1 AATGAAATATTAAA
32984099 TATAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (14 bp):
AATGAAATATTAAA
Found at i:32984979 original size:3 final size:3
Alignment explanation
Indices: 32984973--32985001 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
32984963 TTTTTTTTCT
32984973 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
32985002 TAAGCATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:32995650 original size:13 final size:13
Alignment explanation
Indices: 32995634--32995663 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
32995624 ATCAAAAAAT
32995634 AAACCAAAATGCA
1 AAACCAAAATGCA
32995647 AAACCAAAATGCA
1 AAACCAAAATGCA
32995660 AAAC
1 AAAC
32995664 ACCTGAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.63, C:0.23, G:0.07, T:0.07
Consensus pattern (13 bp):
AAACCAAAATGCA
Found at i:32998684 original size:307 final size:307
Alignment explanation
Indices: 32998130--32999396 Score: 2336
Period size: 307 Copynumber: 4.1 Consensus size: 307
32998120 NNNNNNNNNN
* *
32998130 CATGATAACCGATTCTTCTCTAAGAGTAAATAATTCATACGATCTTACCTCGATAACTATAGTCG
1 CATGATAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACCTCGATAACTATAGTCG
*
32998195 CAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGCCCAGTTGTTGCT
66 CAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGTCCAGTTGTTGCT
32998260 TATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTC
131 TATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTC
32998325 AATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACT
196 AATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACT
32998390 TAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACC
261 TAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACC
* *
32998437 CATGATAACCGATTCTACCCTAAGAGTAAATAATTCATTCGAACTTACCTCGATAACTATAGTCG
1 CATGATAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACCTCGATAACTATAGTCG
32998502 CAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGTCCAGTTGTTGCT
66 CAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGTCCAGTTGTTGCT
32998567 TATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTC
131 TATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTC
32998632 AATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACT
196 AATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACT
32998697 TAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACC
261 TAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACC
*
32998744 CATGATAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACCTCGACAACTATAGTCG
1 CATGATAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACCTCGATAACTATAGTCG
* * *
32998809 CAAAATTCGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCACGATTTAAGTCCAGTTGTTGCT
66 CAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGTCCAGTTGTTGCT
* *
32998874 TATCTTGATCTAAATAAATAATTTCATTCAACTAAGTCCTTCAAATAACCTCAAGTATTCAATTC
131 TATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTC
*
32998939 AATCTATAATTCATATTATCATGAAATTACAAAATTATCGTTCCTATTTTAACTTTTTCACAACT
196 AATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACT
* *
32999004 TAGTCCTTAAACTCGTAACTTTAAATTTAACCATTTTAACTCAAACC
261 TAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACC
* * *
32999051 CATGATAACCGATTCTTCCCTAAGAGTAGATAATTAATACGAACTTACCTCGAAAACTATAGTCG
1 CATGATAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACCTCGATAACTATAGTCG
* *
32999116 CAAAAGTAGAGTTGGAAACTAATCCAATGCTTTTATTTTTCCCCGATTTAAGTCCAGTTGTTGCT
66 CAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGTCCAGTTGTTGCT
*
32999181 TATCTTCATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTC
131 TATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTC
32999246 AATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACT
196 AATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACT
*
32999311 TAGTCCTTAACCTCGTAACTTTAAATTTAACCATTTTAACTTAAACC
261 TAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACC
*
32999358 CATGATAACCGATTCTACCCTAAGAGTAAATAATTCATA
1 CATGATAACCGATTCTTCCCTAAGAGTAAATAATTCATA
32999397 NNNNNNNNNN
Statistics
Matches: 927, Mismatches: 33, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
307 927 1.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (307 bp):
CATGATAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACCTCGATAACTATAGTCG
CAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGTCCAGTTGTTGCT
TATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTC
AATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACT
TAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACC
Found at i:33003071 original size:307 final size:307
Alignment explanation
Indices: 33002162--33003085 Score: 1735
Period size: 306 Copynumber: 3.0 Consensus size: 307
33002152 NNNNNNNNNN
*
33002162 ACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAG-TTTTATTTTTCCCCGATTTAAGTCT
1 ACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGTCC
*
33002226 AGTTGTTGCTTATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAG
66 AGTTGTTGCTTATTTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAG
33002291 TATTCAATTCAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTT
131 TATTCAATTCAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTT
33002356 TTTCACAACTTAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACCCATGATAA
196 TTTCACAACTTAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACCCATGATAA
* *
33002421 CCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTATCTCGATA
261 CCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACCTCGACA
33002468 ACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGTCC
1 ACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGTCC
33002533 AGTTGTTGCTTATTTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAG
66 AGTTGTTGCTTATTTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAG
*
33002598 TATCCAATT-AATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTT
131 TATTCAATTCAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTT
** *
33002662 TTTCACAACTTAGTCCTTGTGCTCGTAACTTTAAATGTAACCATTTTAACTTAAACCCATGATAA
196 TTTCACAACTTAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACCCATGATAA
33002727 CCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACCTCGACA
261 CCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACCTCGACA
* *
33002774 ACTATAGTCGCAAAATTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCACGATTTAAGTCC
1 ACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGTCC
33002839 AGTTGTTGCTTATTTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAG
66 AGTTGTTGCTTATTTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAG
33002904 TATTCAATTCAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTT
131 TATTCAATTCAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTT
33002969 TTTCACAACTTAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACCCATGATAA
196 TTTCACAACTTAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACCCATGATAA
*
33003034 CCGATTCTTCCCAAAGAGTAAATAATTCATACGAACTTACCTCGACA
261 CCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACCTCGACA
33003081 ACTAT
1 ACTAT
33003086 NNNNNNNNNN
Statistics
Matches: 601, Mismatches: 15, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
306 337 0.56
307 264 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (307 bp):
ACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTTAAGTCC
AGTTGTTGCTTATTTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAACCTCAAG
TATTCAATTCAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTTTAACTT
TTTCACAACTTAGTCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACCCATGATAA
CCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACCTCGACA
Found at i:33004981 original size:309 final size:307
Alignment explanation
Indices: 33003912--33005052 Score: 2063
Period size: 307 Copynumber: 3.7 Consensus size: 307
33003902 NNNNNNNNNN
*
33003912 CATTTTAACTTAAACCCATGATAACCGATTCTT-CCTAAGAGTAAATAATTCATACGAACTTACC
1 CATTTTAACTTAAACCCATGAGAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACC
* *
33003976 TC-AGCAACTATAGTCGCAAAAGTAGAGTTGGAGATTAATCCAAAGCTTTTCTTTTTCCCCGATT
66 TCGA-CAACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATT
33004040 TAAGTCCAGTTGTTGCTTATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAA
130 TAAGTCCAGTTGTTGCTTATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAA
33004105 CCTCAAGTATCCAATTCAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATT
195 CCTCAAGTATCCAATTCAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATT
* *
33004170 TTAACTTTTTCACAACTTCGTCCTTAAGCTCGTAACTTTAAATCTAAC
260 TTAACTTTTTCACAACTTAGTCCTTAAGCTCGTAACTTTAAATGTAAC
*
33004218 CATTTTAACTTAAACCCATGATAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACC
1 CATTTTAACTTAAACCCATGAGAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACC
33004283 TCGACAACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTT
66 TCGACAACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTT
* *
33004348 AAGTCCAGTTGTTGCTTATTTTTATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAAC
131 AAGTCCAGTTGTTGCTTATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAAC
* *
33004413 CTCAAGTATTCAATTTAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTT
196 CTCAAGTATCCAATTCAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTT
33004478 TAACTTTTTCACAACTTAGTCCTTAAGCTCGTAACTTTAAATGTAAC
261 TAACTTTTTCACAACTTAGTCCTTAAGCTCGTAACTTTAAATGTAAC
* *
33004525 CATTTTAACTTAAACCCATGAGAACTGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTATC
1 CATTTTAACTTAAACCCATGAGAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACC
*
33004590 TCGATAACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTT
66 TCGACAACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTT
*
33004655 AAGTCCAGTTGTTGCTTATTTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAAC
131 AAGTCCAGTTGTTGCTTATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAAC
33004720 CTCAAGTATCCAATT-AATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTT
196 CTCAAGTATCCAATTCAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTT
* *
33004784 TAACTTTTTCACAACTTTGTCCTTGTAGCTCGTAACTTTAAAGTGTTAAC
261 TAACTTTTTCACAACTTAGTCCTT-AAGCTCGTAACTTTAAA-TG-TAAC
33004834 CATTTTAACTTAAACCCATGAGAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACC
1 CATTTTAACTTAAACCCATGAGAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACC
* *
33004899 TCGATAACTATAGTCGCAAAAGTTGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTT
66 TCGACAACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTT
33004964 AAGTCCAGTTGTTGCTTATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAAC
131 AAGTCCAGTTGTTGCTTATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAAC
33005029 CTCAAGTATCCAATTCAATCTATA
196 CTCAAGTATCCAATTCAATCTATA
33005053 TTTACAAAAT
Statistics
Matches: 809, Mismatches: 20, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
306 105 0.13
307 483 0.60
308 3 0.00
309 210 0.26
310 8 0.01
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (307 bp):
CATTTTAACTTAAACCCATGAGAACCGATTCTTCCCTAAGAGTAAATAATTCATACGAACTTACC
TCGACAACTATAGTCGCAAAAGTAGAGTTGGAGACTAATCCAAAGCTTTTATTTTTCCCCGATTT
AAGTCCAGTTGTTGCTTATCTTGATCTAAATAAATAATTTCATTCAATTAAGTACTTCAAATAAC
CTCAAGTATCCAATTCAATCTATAATTCATATTATCATGAAATTACAAAATTATCCTTCCTATTT
TAACTTTTTCACAACTTAGTCCTTAAGCTCGTAACTTTAAATGTAAC
Found at i:33005845 original size:305 final size:307
Alignment explanation
Indices: 33005193--33006117 Score: 1730
Period size: 305 Copynumber: 3.0 Consensus size: 307
33005183 NNNNNNNNNN
33005193 TCCTTAAGCTCGTAACTTTAAATGTAACCATTTTAACTTAAACCCATGATAACCGATTCTTCCCT
1 TCCTTAAGCTCGTAACTTTAAATGTAACCATTTTAACTTAAACCCATGATAACCGATTCTTCCCT
33005258 AAGAGTAAATAATTCAGACGAACTTACCTCGACAACTATAGTCGCAAAATTAGAGTTGGAGACTA
66 AAGAGTAAATAATTCAGACGAACTTACCTCGACAACTATAGTCGCAAAATTAGAGTTGGAGACTA
33005323 ATCCAAAGCTTTTATTTTTCCACGATTTAAGTCCAGTTGTTGCTTATTTTGATATAAATAAATAA
131 ATCCAAAGCTTTTATTTTTCCACGATTTAAGTCCAGTTGTTGCTTATTTTGATATAAATAAATAA
33005388 TTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTCAATCTATAATTCATATTATCA
196 TTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTCAATCTATAATTCATATTATCA
33005453 TGAAATTACAAAATTATCCTTCCTATTTTAAC-TTTTCACAACTTAG
261 TGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACTTAG
* *
33005499 TCCTTAAGCTCGTAACTTTAAATTTAACCATTTTAACTTAAACCCATGATAACCGATTCTTCTCT
1 TCCTTAAGCTCGTAACTTTAAATGTAACCATTTTAACTTAAACCCATGATAACCGATTCTTCCCT
* * * *
33005564 AAGAGTAAATAATTCATACGATCTTACCTCGATAACTATAGTCGCAAAAGTAGAGTTGGAGACTA
66 AAGAGTAAATAATTCAGACGAACTTACCTCGACAACTATAGTCGCAAAATTAGAGTTGGAGACTA
* *
33005629 ATCCAAAGCTTTTATTTTTCCCCGATTT-AGTCCAGTTGTTGCTTATTTTGATCTAAATAAATAA
131 ATCCAAAGCTTTTATTTTTCCACGATTTAAGTCCAGTTGTTGCTTATTTTGATATAAATAAATAA
*
33005693 TTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATCCAATT-AATCTATAATTCATATTATCA
196 TTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTCAATCTATAATTCATATTATCA
33005757 TGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACTTAG
261 TGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACTTAG
**
33005804 TCCTTGTGCTCGTAACTTTAAATGTAACCATTTTAACTTAAACCCATGATAACCGATTCTTCCCT
1 TCCTTAAGCTCGTAACTTTAAATGTAACCATTTTAACTTAAACCCATGATAACCGATTCTTCCCT
33005869 AAGAGTAAATAATTCAGACGAACTTACCTCGACAACTATAGTCGCAAAATTAGAGTTGGAGACTA
66 AAGAGTAAATAATTCAGACGAACTTACCTCGACAACTATAGTCGCAAAATTAGAGTTGGAGACTA
33005934 ATCCAAAGCTTTTATTTTTCCACGATTTAAGTCCAGTTGTTGCTTATTTTGATATAAATAAATAA
131 ATCCAAAGCTTTTATTTTTCCACGATTTAAGTCCAGTTGTTGCTTATTTTGATATAAATAAATAA
33005999 TTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTCAATCTATAATTCATATTATCA
196 TTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTCAATCTATAATTCATATTATCA
33006064 TGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACTTAG
261 TGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACTTAG
33006111 TCCTTAA
1 TCCTTAA
33006118 TTTTTCTTGT
Statistics
Matches: 594, Mismatches: 22, Indels: 5
0.96 0.04 0.01
Matches are distributed among these distances:
304 53 0.09
305 240 0.40
306 228 0.38
307 73 0.12
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (307 bp):
TCCTTAAGCTCGTAACTTTAAATGTAACCATTTTAACTTAAACCCATGATAACCGATTCTTCCCT
AAGAGTAAATAATTCAGACGAACTTACCTCGACAACTATAGTCGCAAAATTAGAGTTGGAGACTA
ATCCAAAGCTTTTATTTTTCCACGATTTAAGTCCAGTTGTTGCTTATTTTGATATAAATAAATAA
TTTCATTCAATTAAGTACTTCAAATAACCTCAAGTATTCAATTCAATCTATAATTCATATTATCA
TGAAATTACAAAATTATCCTTCCTATTTTAACTTTTTCACAACTTAG
Found at i:33007370 original size:36 final size:36
Alignment explanation
Indices: 33007326--33007399 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
33007316 TTCAAGAACC
33007326 AACAGATGCATCTAGAGAAAGGTTTCACATTGAAAG
1 AACAGATGCATCTAGAGAAAGGTTTCACATTGAAAG
*
33007362 AACAGATGCATCTAGAGAAAGGTTTCACGTTGAAAG
1 AACAGATGCATCTAGAGAAAGGTTTCACATTGAAAG
33007398 AA
1 AA
33007400 AGCAACTATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.22
Consensus pattern (36 bp):
AACAGATGCATCTAGAGAAAGGTTTCACATTGAAAG
Found at i:33021408 original size:20 final size:20
Alignment explanation
Indices: 33021371--33021485 Score: 76
Period size: 20 Copynumber: 5.8 Consensus size: 20
33021361 GATGTAAAAA
* *
33021371 AGGGGCACCAAAGGGCAATC
1 AGGGGCACCGAAGTGCAATC
* *
33021391 AGGGGCATCGAAGTGCAATT
1 AGGGGCACCGAAGTGCAATC
* * *
33021411 AAGAGCA-CGAGTGTGCAATC
1 AGGGGCACCGA-AGTGCAATC
* *
33021431 AGGGGCACCCG-AGTGTAGTC
1 AGGGGCA-CCGAAGTGCAATC
*
33021451 AAGGGCA-CGAATGTGCTAA-C
1 AGGGGCACCGAA-GTGC-AATC
33021471 AGGGGCACCGAAGTG
1 AGGGGCACCGAAGTG
33021486 TTTATAGGGG
Statistics
Matches: 71, Mismatches: 17, Indels: 14
0.70 0.17 0.14
Matches are distributed among these distances:
18 2 0.03
19 4 0.06
20 58 0.82
21 5 0.07
22 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.36, T:0.13
Consensus pattern (20 bp):
AGGGGCACCGAAGTGCAATC
Found at i:33021486 original size:40 final size:40
Alignment explanation
Indices: 33021385--33021486 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 40
33021375 GCACCAAAGG
* * * *
33021385 GCAATCAGGGGCATCGAAGTGCAATTAAGAGCACGAGTGT
1 GCAATCAGGGGCACCGAAGTGTAATCAAGAGCACGAATGT
* *
33021425 GCAATCAGGGGCACCCG-AGTGTAGTCAAGGGCACGAATGT
1 GCAATCAGGGGCA-CCGAAGTGTAATCAAGAGCACGAATGT
33021465 GCTAA-CAGGGGCACCGAAGTGT
1 GC-AATCAGGGGCACCGAAGTGT
33021487 TTATAGGGGC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
39 3 0.06
40 46 0.87
41 4 0.08
ACGTcount: A:0.29, C:0.21, G:0.34, T:0.16
Consensus pattern (40 bp):
GCAATCAGGGGCACCGAAGTGTAATCAAGAGCACGAATGT
Found at i:33021497 original size:40 final size:40
Alignment explanation
Indices: 33021453--33021537 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
33021443 GTGTAGTCAA
* *
33021453 GGGCAC-GAATGTGCTAACAGGGGCACCGAAGTGTTTATAG
1 GGGCACAG-ATGTGCAAACAGGGACACCGAAGTGTTTATAG
* **
33021493 GGGCACAGTTGTGCAAACAGGGACATTGAAGTGTTTATAG
1 GGGCACAGATGTGCAAACAGGGACACCGAAGTGTTTATAG
33021533 GGGCA
1 GGGCA
33021538 TTGGGGTGCA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 38 0.97
41 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.35, T:0.21
Consensus pattern (40 bp):
GGGCACAGATGTGCAAACAGGGACACCGAAGTGTTTATAG
Found at i:33021627 original size:13 final size:13
Alignment explanation
Indices: 33021609--33021633 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33021599 ATACAATTCA
33021609 TTTCAATTCCATT
1 TTTCAATTCCATT
33021622 TTTCAATTCCAT
1 TTTCAATTCCAT
33021634 GAATATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTCAATTCCATT
Found at i:33031869 original size:6 final size:6
Alignment explanation
Indices: 33031858--33031893 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
33031848 GAAATTCTCC
* *
33031858 CTTTCT CTTTCT CTTTCT CTTTCA CTTTCT GTTTCT
1 CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT
33031894 TATAATTGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.03, C:0.31, G:0.03, T:0.64
Consensus pattern (6 bp):
CTTTCT
Found at i:33032865 original size:51 final size:50
Alignment explanation
Indices: 33032805--33032948 Score: 162
Period size: 51 Copynumber: 2.9 Consensus size: 50
33032795 AAGGTGAAAG
*
33032805 CAGTGGTAGTATATCTACAAATCAGTGGTGGCTTGTCCACAAAATATATAT
1 CAGTGGTAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAATAT-TAT
* * * * * ** *
33032856 CAGTGGTAGTATATCTGTATACCAGTGGTCGTTTGTCCACAATGTGTTAT
1 CAGTGGTAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAATATTAT
* * * *
33032906 CAGTGGCAGTTTATCCGCAAATTAGTGGTGGCTTGTCCACAAA
1 CAGTGGTAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAA
33032949 TGGTGTTTCG
Statistics
Matches: 74, Mismatches: 19, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
50 36 0.49
51 38 0.51
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (50 bp):
CAGTGGTAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAATATTAT
Found at i:33034533 original size:25 final size:25
Alignment explanation
Indices: 33034450--33034533 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 25
33034440 CGTTCCAACC
*
33034450 CATAGCTC-ATGTGAGCATACCAATT
1 CATAGCTCGA-GTGAGCATACCGATT
* * * **
33034475 TATAGCTCGTGAGAGCATATAGA-T
1 CATAGCTCGAGTGAGCATACCGATT
*
33034499 CTACAGCTCGAGTGAGCATACCGATT
1 C-ATAGCTCGAGTGAGCATACCGATT
33034525 CATAGCTCG
1 CATAGCTCG
33034534 TATTAGCATA
Statistics
Matches: 43, Mismatches: 13, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
24 1 0.02
25 40 0.93
26 2 0.05
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (25 bp):
CATAGCTCGAGTGAGCATACCGATT
Found at i:33037427 original size:136 final size:135
Alignment explanation
Indices: 33037229--33037515 Score: 429
Period size: 136 Copynumber: 2.1 Consensus size: 135
33037219 GAAAACATAG
*
33037229 ATATAATTAATATATGATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTA
1 ATATAATTAATATATGATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT-
*
33037294 ATATATAAACAG-TTA-T-ATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCT-T
65 A-ATATAAACAGTTTATTAATTAATTTCAGTCAAAATAT-AAAGACATGGAAATTAATATT-TGT
33037355 TTGGAAAGA
127 TTGGAAAGA
33037364 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATG-ATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
** * *
33037429 AATATAAATTGTTTTATTAATTAATTTCAGTTAAAATATAAAGATATGGAAATTAATATTTGTTT
65 AATATAAACAG-TTTATTAATTAATTTCAGTCAAAATATAAAGACATGGAAATTAATATTTGTTT
33037494 GGAAAGA
129 GGAAAGA
*
33037501 ATATAATTAAGATAT
1 ATATAATTAATATAT
33037516 TAATATTATA
Statistics
Matches: 139, Mismatches: 7, Indels: 10
0.89 0.04 0.06
Matches are distributed among these distances:
134 8 0.06
135 17 0.12
136 51 0.37
137 45 0.32
138 18 0.13
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (135 bp):
ATATAATTAATATATGATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTA
ATATAAACAGTTTATTAATTAATTTCAGTCAAAATATAAAGACATGGAAATTAATATTTGTTTGG
AAAGA
Found at i:33037526 original size:115 final size:116
Alignment explanation
Indices: 33037397--33037624 Score: 311
Period size: 115 Copynumber: 2.0 Consensus size: 116
33037387 TTCATACAAA
*** * * *
33037397 ATATTAATTGTATATATTTTACCAAATTTATTAATATAAATTGTTTTATTAATTAATTTCAGTTA
1 ATATTAATTGTATATATTTTACCAAATTTATTAATATAAACAATTATAATAATTAATTTCAGTCA
* *
33037462 AAATAT-AAAGA-TATGGAAATTAATATT-TGTTTGGAAAGAATATAATTAAG
66 AAATATAAAAGACT-TAGAAATTAATATTCT-TTTGGAAAAAATATAATTAAG
* *
33037512 ATATTAATAT-TATATATTTTATCAAATTTATTAATATAAACAATTATAATAATTAATTTCGGTC
1 ATATTAAT-TGTATATATTTTACCAAATTTATTAATATAAACAATTATAATAATTAATTTCAGTC
33037576 AAAATATAAAAGACTTAGAAATTAATATTCTTTTGGAAAAAATATAATT
65 AAAATATAAAAGACTTAGAAATTAATATTCTTTTGGAAAAAATATAATT
33037625 CCTTTTTCTA
Statistics
Matches: 99, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
115 61 0.62
116 36 0.36
117 2 0.02
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (116 bp):
ATATTAATTGTATATATTTTACCAAATTTATTAATATAAACAATTATAATAATTAATTTCAGTCA
AAATATAAAAGACTTAGAAATTAATATTCTTTTGGAAAAAATATAATTAAG
Found at i:33037727 original size:75 final size:75
Alignment explanation
Indices: 33037600--33037746 Score: 204
Period size: 75 Copynumber: 2.0 Consensus size: 75
33037590 TTAGAAATTA
* * ** * * *
33037600 ATATTCTTTTGGAAAAAATATAATTCCTTTTTCTAACTTTCGATTTGTCTTCTCTATTAATAAGA
1 ATATTCTTTTAGAAAAAATATAAATAATTTTTCTAACTTTCCATTTGACTTCTATATTAATAAGA
33037665 GAATAATTCT
66 GAATAATTCT
* * *
33037675 ATATTCTTTTAGAAAGAATATAAATAATTTTTTTAACTTTCCATTTGACTTCTATATTAATAAGG
1 ATATTCTTTTAGAAAAAATATAAATAATTTTTCTAACTTTCCATTTGACTTCTATATTAATAAGA
33037740 GAATAAT
66 GAATAAT
33037747 CTTGCTTTTC
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
75 62 1.00
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (75 bp):
ATATTCTTTTAGAAAAAATATAAATAATTTTTCTAACTTTCCATTTGACTTCTATATTAATAAGA
GAATAATTCT
Found at i:33038184 original size:18 final size:17
Alignment explanation
Indices: 33038161--33038198 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
33038151 TTAAGATTTC
33038161 TATAATAATA-AAATATAA
1 TATAATAA-AGAAATA-AA
33038179 TATAATAAAGAAATAAA
1 TATAATAAAGAAATAAA
33038196 TAT
1 TAT
33038199 CAAGAGATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
TATAATAAAGAAATAAA
Found at i:33044904 original size:21 final size:18
Alignment explanation
Indices: 33044878--33044921 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
33044868 TTGAAATATA
33044878 TAATTATCTTTACAATAAAAT
1 TAATTAT-TTTA-AAT-AAAT
*
33044899 TAATTATTTTAGATAAAT
1 TAATTATTTTAAATAAAT
33044917 TAATT
1 TAATT
33044922 TTAATATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 9 0.41
19 2 0.09
20 4 0.18
21 7 0.32
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (18 bp):
TAATTATTTTAAATAAAT
Found at i:33046278 original size:16 final size:16
Alignment explanation
Indices: 33046259--33046289 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
33046249 ATTTTAGGGT
33046259 TGTGAAATTGAGACTG
1 TGTGAAATTGAGACTG
33046275 TGTGAAATTGAGACT
1 TGTGAAATTGAGACT
33046290 CTGTAAGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.32
Consensus pattern (16 bp):
TGTGAAATTGAGACTG
Found at i:33048259 original size:7 final size:7
Alignment explanation
Indices: 33048249--33048277 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
33048239 TATGCTTCTA
33048249 TCCTGTT
1 TCCTGTT
33048256 TCCTGTT
1 TCCTGTT
33048263 TCCTGTT
1 TCCTGTT
33048270 TCCTGTT
1 TCCTGTT
33048277 T
1 T
33048278 TGTTTAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.28, G:0.14, T:0.59
Consensus pattern (7 bp):
TCCTGTT
Found at i:33048546 original size:9 final size:9
Alignment explanation
Indices: 33048532--33048562 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
33048522 GTTAAACAAA
33048532 TCGAGTTAT
1 TCGAGTTAT
*
33048541 TCGAGTTAA
1 TCGAGTTAT
33048550 TCGAGTTAT
1 TCGAGTTAT
33048559 TCGA
1 TCGA
33048563 ATCAACCTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:33048911 original size:30 final size:31
Alignment explanation
Indices: 33048857--33048916 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
33048847 AAACTTTTTA
*
33048857 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* * *
33048887 TTTTTCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
33048917 TCTCACCTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:33053732 original size:11 final size:11
Alignment explanation
Indices: 33053718--33053758 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
33053708 TTATTTTTTT
33053718 TATTTTTAAAA
1 TATTTTTAAAA
*
33053729 TATTTTTTAAA
1 TATTTTTAAAA
33053740 TACTTTTTAAAA
1 TA-TTTTTAAAA
33053752 T-TTTTTA
1 TATTTTTA
33053759 TTTTAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
10 6 0.22
11 12 0.44
12 9 0.33
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:33053747 original size:38 final size:36
Alignment explanation
Indices: 33053705--33053795 Score: 101
Period size: 37 Copynumber: 2.4 Consensus size: 36
33053695 ATATATTTAT
*
33053705 TTTTTATTTTTTTTATTTTTAAAATATTTTTTAAATAC
1 TTTTTATTTTTTTTA-TTTTAAAATA-TTTTAAAATAC
** *
33053743 TTTTTAAAATTTTTTATTTTAAAATATTTTAAAATCC
1 TTTTT-ATTTTTTTTATTTTAAAATATTTTAAAATAC
*
33053780 TTTTTTTATTTTTTTA
1 TTTTTAT-TTTTTTTA
33053796 AATTTTTTTG
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
37 21 0.48
38 15 0.34
39 8 0.18
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (36 bp):
TTTTTATTTTTTTTATTTTAAAATATTTTAAAATAC
Found at i:33053764 original size:15 final size:15
Alignment explanation
Indices: 33053744--33053773 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33053734 TTTAAATACT
*
33053744 TTTTAAAATTTTTTA
1 TTTTAAAATATTTTA
33053759 TTTTAAAATATTTTA
1 TTTTAAAATATTTTA
33053774 AAATCCTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTAAAATATTTTA
Found at i:33054544 original size:22 final size:22
Alignment explanation
Indices: 33054486--33054547 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
33054476 TTTCCTTGAT
*
33054486 CACCACCACTTCACCACCATAG
1 CACCACCACATCACCACCATAG
* * *
33054508 CACCACTACACCACCACCCTAG
1 CACCACCACATCACCACCATAG
**
33054530 CACCACCGTATCACCACC
1 CACCACCACATCACCACC
33054548 TTAAAAAAAG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.31, C:0.53, G:0.05, T:0.11
Consensus pattern (22 bp):
CACCACCACATCACCACCATAG
Found at i:33056070 original size:24 final size:24
Alignment explanation
Indices: 33056012--33056121 Score: 114
Period size: 24 Copynumber: 4.5 Consensus size: 24
33056002 GCTTATCCAG
*
33056012 GCAATATAACGGGAAGCTCACAAAGA
1 GCAAT-TAACGGGTAGCTC-CAAAGA
* *
33056038 GC-CTATAATGGGTAGCTCCAAAGA
1 GCAAT-TAACGGGTAGCTCCAAAGA
* *
33056062 GCAATTAATGGGTAGCTCCGAAGA
1 GCAATTAACGGGTAGCTCCAAAGA
* *
33056086 GCAATTAACGGGTACCTCCGAAGA
1 GCAATTAACGGGTAGCTCCAAAGA
*
33056110 GCAGTTAACGGG
1 GCAATTAACGGG
33056122 AAGCACCAGA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
24 59 0.79
25 14 0.19
26 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.17
Consensus pattern (24 bp):
GCAATTAACGGGTAGCTCCAAAGA
Found at i:33056311 original size:25 final size:24
Alignment explanation
Indices: 33056275--33056331 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
33056265 ACAACCGATT
* *
33056275 GGGATGCTGCAAAGAGCATT-TAAC
1 GGGAAGCTGC-AAGAACATTATAAC
*
33056299 GGGAAGCTCGCAAGAACATTATAAT
1 GGGAAGCT-GCAAGAACATTATAAC
33056324 GGGAAGCT
1 GGGAAGCT
33056332 TGCGAGGGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 15 0.54
25 13 0.46
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.19
Consensus pattern (24 bp):
GGGAAGCTGCAAGAACATTATAAC
Found at i:33063704 original size:26 final size:26
Alignment explanation
Indices: 33063547--33063736 Score: 96
Period size: 24 Copynumber: 7.7 Consensus size: 26
33063537 TATCCGGGCA
* * *
33063547 ATATAACGAGAAGCTCATAAAAAGCC
1 ATATAACGGGAAGCTCACAAAGAGCC
* *
33063573 -TATAACGGGTAGCTC-CAAAGAGCA
1 ATATAACGGGAAGCTCACAAAGAGCC
* ** * *
33063597 AT-TAATGGCTAGCTC-CGAAGAGCA
1 ATATAACGGGAAGCTCACAAAGAGCC
* * *
33063621 AT-TAACGAGAAGCAC-CAAATAGCC
1 ATATAACGGGAAGCTCACAAAGAGCC
* * * **
33063645 ATAGAACGGAAAGTTCA-AGCGAG-C
1 ATATAACGGGAAGCTCACAAAGAGCC
33063669 ACTA-AA-GGGAAGCTCACAAAGAGCC
1 A-TATAACGGGAAGCTCACAAAGAGCC
* *
33063694 -TTTAATCGGGAAGCTCACGAAGAGCC
1 ATATAA-CGGGAAGCTCACAAAGAGCC
*
33063720 ATATAACGGGACGCTCA
1 ATATAACGGGAAGCTCA
33063737 TAAGAGCTGC
Statistics
Matches: 122, Mismatches: 32, Indels: 20
0.70 0.18 0.11
Matches are distributed among these distances:
23 9 0.07
24 53 0.43
25 28 0.23
26 28 0.23
27 4 0.03
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.15
Consensus pattern (26 bp):
ATATAACGGGAAGCTCACAAAGAGCC
Found at i:33067480 original size:15 final size:15
Alignment explanation
Indices: 33067460--33067497 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
33067450 CACAATCATA
33067460 ACAAGTAATAAAGTG
1 ACAAGTAATAAAGTG
33067475 ACAAGTAATAAAGTG
1 ACAAGTAATAAAGTG
33067490 ACAAGTAA
1 ACAAGTAA
33067498 ATGTCGAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.55, C:0.08, G:0.18, T:0.18
Consensus pattern (15 bp):
ACAAGTAATAAAGTG
Found at i:33070727 original size:26 final size:26
Alignment explanation
Indices: 33070697--33070751 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
33070687 ATTTATCCTA
33070697 AAATAACCTAAAAACATAAATAAAAT
1 AAATAACCTAAAAACATAAATAAAAT
* *
33070723 AAATAACCTAAGAACATAGATAAAAT
1 AAATAACCTAAAAACATAAATAAAAT
33070749 AAA
1 AAA
33070752 GTCGAGATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.67, C:0.11, G:0.04, T:0.18
Consensus pattern (26 bp):
AAATAACCTAAAAACATAAATAAAAT
Found at i:33072818 original size:27 final size:27
Alignment explanation
Indices: 33072784--33072844 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
33072774 CAGAAAGGTT
*
33072784 GTAAAATTAAT-GGAATACCCTCGAAGG
1 GTAAAATT-ATCGAAATACCCTCGAAGG
*
33072811 GTAAAATTATCGAAATACCCTTGAAGG
1 GTAAAATTATCGAAATACCCTCGAAGG
33072838 GTAAAAT
1 GTAAAAT
33072845 GACCGTAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 2 0.06
27 29 0.94
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCTCGAAGG
Found at i:33072969 original size:24 final size:24
Alignment explanation
Indices: 33072942--33072988 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
33072932 TCCAAGATGT
*
33072942 AAATGACTGATTTTTCTGTGATTA
1 AAATGACTGATTTGTCTGTGATTA
33072966 AAATGACTGATTTGTCTGTGATT
1 AAATGACTGATTTGTCTGTGATT
33072989 TGTATCACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.45
Consensus pattern (24 bp):
AAATGACTGATTTGTCTGTGATTA
Found at i:33073135 original size:27 final size:27
Alignment explanation
Indices: 33073071--33073129 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
33073061 GAAGTACTAT
33073071 ACTGGTGGC-TCTGCCACAATCACTGTA
1 ACTGGTGGCTTC-GCCACAATCACTGTA
*
33073098 ACTGGTGGCTTCGCCACATAT-ACTGTT
1 ACTGGTGGCTTCGCCACA-ATCACTGTA
33073125 ACTGG
1 ACTGG
33073130 GAGCTTTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 25 0.86
28 4 0.14
ACGTcount: A:0.20, C:0.27, G:0.24, T:0.29
Consensus pattern (27 bp):
ACTGGTGGCTTCGCCACAATCACTGTA
Found at i:33073155 original size:26 final size:26
Alignment explanation
Indices: 33073117--33073170 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
33073107 TTCGCCACAT
* *
33073117 ATACTGTTACTGGGAGCTTTGTTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
*
33073143 ATACTGTTGCTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
33073169 AT
1 AT
33073171 GCTATTGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.15, C:0.19, G:0.30, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:33073182 original size:26 final size:26
Alignment explanation
Indices: 33073131--33073182 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
33073121 TGTTACTGGG
* * *
33073131 AGCTTTGTTGCGATACTGTTGCTGGC
1 AGCTTTGCTGCGATACTATTGATGGC
*
33073157 AGCTTTGCTGCGATGCTATTGATGGC
1 AGCTTTGCTGCGATACTATTGATGGC
33073183 TTTGTGCCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.13, C:0.19, G:0.31, T:0.37
Consensus pattern (26 bp):
AGCTTTGCTGCGATACTATTGATGGC
Found at i:33073342 original size:96 final size:96
Alignment explanation
Indices: 33073172--33073362 Score: 301
Period size: 96 Copynumber: 2.0 Consensus size: 96
33073162 TGCTGCGATG
* * *
33073172 CTATTGATGGCTTTGTGCCGATCATATTACCATTACTGATGGTTGTGTACCGATCATATTACCAT
1 CTATTGATGGCTTTGTGCCGATCATACTACCATTACTGATGGCTGTGTACCGATCATATTACCAC
*
33073237 TACTAATGGCTGTGTGCCGATCATATTACTA
66 TACTAATGGCTGTGTGCCAATCATATTACTA
* * *
33073268 CTATTGATGGCTTTGTGCCGATCATACTACGATTACTGATGGCTGTGTGCCGATCATATTACTAC
1 CTATTGATGGCTTTGTGCCGATCATACTACCATTACTGATGGCTGTGTACCGATCATATTACCAC
* *
33073333 TACTGATGGCTTTGTGCCAATCATATTACT
66 TACTAATGGCTGTGTGCCAATCATATTACT
33073363 GTACTTATGG
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 86 1.00
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.37
Consensus pattern (96 bp):
CTATTGATGGCTTTGTGCCGATCATACTACCATTACTGATGGCTGTGTACCGATCATATTACCAC
TACTAATGGCTGTGTGCCAATCATATTACTA
Found at i:33073362 original size:32 final size:32
Alignment explanation
Indices: 33073176--33073375 Score: 251
Period size: 32 Copynumber: 6.3 Consensus size: 32
33073166 GCGATGCTAT
*
33073176 TGATGGCTTTGTGCCGATCATATTACCATTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* *
33073208 TGATGG-TTGTGTACCGATCATATTACCATTAC
1 TGATGGCTT-TGTGCCGATCATATTACTATTAC
* * * *
33073240 TAATGGCTGTGTGCCGATCATATTACTACTAT
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* *
33073272 TGATGGCTTTGTGCCGATCATACTACGATTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* *
33073304 TGATGGCTGTGTGCCGATCATATTACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* *
33073336 TGATGGCTTTGTGCCAATCATATTACT-GTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
*
33073367 TTATGGCTT
1 TGATGGCTT
33073376 GTAGCAATTC
Statistics
Matches: 145, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
31 13 0.09
32 131 0.90
33 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATATTACTATTAC
Found at i:33073392 original size:22 final size:22
Alignment explanation
Indices: 33073367--33073416 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
33073357 ATTACTGTAC
* * *
33073367 TTATGGCTTGTAGCAATTCTGT
1 TTATGGCTTATAGCAATCCTAT
* *
33073389 TTATAGCTTATAGCTATCCTAT
1 TTATGGCTTATAGCAATCCTAT
33073411 TTATGG
1 TTATGG
33073417 TTCTTAGCCA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.14, G:0.18, T:0.46
Consensus pattern (22 bp):
TTATGGCTTATAGCAATCCTAT
Found at i:33075935 original size:98 final size:98
Alignment explanation
Indices: 33075762--33075957 Score: 338
Period size: 98 Copynumber: 2.0 Consensus size: 98
33075752 TACAATAAAT
* * *
33075762 CTTTAAAAGAATATCCGCTTATCCAAGATTTAAGAAATCACACCCAATACGCTAGGGCACGATTC
1 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGCTAGGGCACAATTC
*
33075827 CTCTAGAATCCCAAACTCGGAATATTTCCTTTA
66 CTCTAAAATCCCAAACTCGGAATATTTCCTTTA
*
33075860 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
1 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGCTAGGGCACAATTC
*
33075925 CTTTAAAATCCCAAACTCGGAATATTTCCTTTA
66 CTCTAAAATCCCAAACTCGGAATATTTCCTTTA
33075958 TGATTTTTTA
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (98 bp):
CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGCTAGGGCACAATTC
CTCTAAAATCCCAAACTCGGAATATTTCCTTTA
Found at i:33076658 original size:17 final size:17
Alignment explanation
Indices: 33076636--33076700 Score: 53
Period size: 17 Copynumber: 3.7 Consensus size: 17
33076626 GGTAAATAAA
33076636 ATAAAAAATATGTATGT
1 ATAAAAAATATGTATGT
* *
33076653 ATAAAATATATGCATATTT
1 ATAAAAAATATG--TATGT
*
33076672 ATAAAAAAAATATTTATGT
1 AT--AAAAAATATGTATGT
33076691 -T-AAAAATATG
1 ATAAAAAATATG
33076701 AATATATTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
15 8 0.21
17 11 0.29
18 1 0.03
19 10 0.26
21 8 0.21
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.37
Consensus pattern (17 bp):
ATAAAAAATATGTATGT
Found at i:33076680 original size:38 final size:38
Alignment explanation
Indices: 33076638--33076732 Score: 113
Period size: 37 Copynumber: 2.5 Consensus size: 38
33076628 TAAATAAAAT
*
33076638 AAAAAATATGTATGTATAAAATATATGCATAT-TTATAA
1 AAAAAATATGTATGTATAAAA-ATATGAATATATTATAA
* *
33076676 AAAAAATATTTATGT-TAAAAATATGAATATATTATAT
1 AAAAAATATGTATGTATAAAAATATGAATATATTATAA
*
33076713 ATAAAATATGCGTATGTATA
1 AAAAAATAT--GTATGTATA
33076733 TGTATAGATA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
36 9 0.19
37 18 0.38
38 14 0.29
39 5 0.10
40 2 0.04
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (38 bp):
AAAAAATATGTATGTATAAAAATATGAATATATTATAA
Found at i:33078132 original size:30 final size:30
Alignment explanation
Indices: 33078075--33078135 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
33078065 GCTTTTTGAA
** * *
33078075 AATATTTACAAAAAAAGGCATCTAATTTTT
1 AATATTTACAAAAAAAGAAACCAAATTTTT
*
33078105 AATATTTACAAAAAGAGAAACCAAATTTTT
1 AATATTTACAAAAAAAGAAACCAAATTTTT
33078135 A
1 A
33078136 GAAATAATTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAAAGAAACCAAATTTTT
Found at i:33082804 original size:5 final size:5
Alignment explanation
Indices: 33082794--33082820 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
33082784 AAAGCTTTTG
33082794 TTTAA TTTAA TTTAA TTTAA TTTAA TT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TT
33082821 CATCAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTTAA
Found at i:33088983 original size:23 final size:23
Alignment explanation
Indices: 33088953--33088997 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
33088943 ATTATTTTTA
33088953 GTATAGTTTATAAAAAATCTTTG
1 GTATAGTTTATAAAAAATCTTTG
33088976 GTATAGTTTATAAAAAATCTTT
1 GTATAGTTTATAAAAAATCTTT
33088998 CTTTTAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.44
Consensus pattern (23 bp):
GTATAGTTTATAAAAAATCTTTG
Found at i:33092185 original size:75 final size:75
Alignment explanation
Indices: 33092097--33092418 Score: 394
Period size: 75 Copynumber: 4.3 Consensus size: 75
33092087 TTATGCCCTG
* * * * *
33092097 CGCTAGTCGGATAAACCGACAGATATAATGATGTGCCCAGCACTAGTTAGATAAACTGACGAAAG
1 CGCTAGTCGGATAAACTGAAAAATATAATGGTGTGCCCAGCACTAGTCAGATAAACTGACGAAAG
33092162 TTGCACCCAA
66 TTGCACCCAA
* * * * * *
33092172 CGGTAGTCAGATAAACTAAAAAATATAATGGTGTGCCCATCACTAGTCAGATAAGCTGATGAAAG
1 CGCTAGTCGGATAAACTGAAAAATATAATGGTGTGCCCAGCACTAGTCAGATAAACTGACGAAAG
*
33092237 TTGCACCCTA
66 TTGCACCCAA
* * * * * *
33092247 CCCTAGTCGGATAAATTGAAAAATATAATGGTGTGCCTAGCACTAGTCAGATAAATTGATGAAAT
1 CGCTAGTCGGATAAACTGAAAAATATAATGGTGTGCCCAGCACTAGTCAGATAAACTGACGAAAG
* *
33092312 TTGCGCCCAG
66 TTGCACCCAA
* * * *
33092322 TGCTAG-CTGGATGAACTGACAAATATAATGGTGTGCCCAGCACTAGTCAGATAAACTGACAAAA
1 CGCTAGTC-GGATAAACTGAAAAATATAATGGTGTGCCCAGCACTAGTCAGATAAACTGACGAAA
* *
33092386 GTTGCGCCCAG
65 GTTGCACCCAA
33092397 CGCTAGTCGGATAAACTGAAAA
1 CGCTAGTCGGATAAACTGAAAA
33092419 TGGCTTGCGT
Statistics
Matches: 207, Mismatches: 38, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
74 1 0.00
75 205 0.99
76 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.23
Consensus pattern (75 bp):
CGCTAGTCGGATAAACTGAAAAATATAATGGTGTGCCCAGCACTAGTCAGATAAACTGACGAAAG
TTGCACCCAA
Found at i:33095449 original size:85 final size:85
Alignment explanation
Indices: 33095319--33095488 Score: 340
Period size: 85 Copynumber: 2.0 Consensus size: 85
33095309 GATTTACCGT
33095319 GAAATGAGGCGTTGTGTGCACAATCAAAAAGTCGAAATCTTCTTCCCCCACTTGGTGATAGAACT
1 GAAATGAGGCGTTGTGTGCACAATCAAAAAGTCGAAATCTTCTTCCCCCACTTGGTGATAGAACT
33095384 GTGTCGAAGGGCAGAAGTTC
66 GTGTCGAAGGGCAGAAGTTC
33095404 GAAATGAGGCGTTGTGTGCACAATCAAAAAGTCGAAATCTTCTTCCCCCACTTGGTGATAGAACT
1 GAAATGAGGCGTTGTGTGCACAATCAAAAAGTCGAAATCTTCTTCCCCCACTTGGTGATAGAACT
33095469 GTGTCGAAGGGCAGAAGTTC
66 GTGTCGAAGGGCAGAAGTTC
33095489 CAATGGGCAA
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (85 bp):
GAAATGAGGCGTTGTGTGCACAATCAAAAAGTCGAAATCTTCTTCCCCCACTTGGTGATAGAACT
GTGTCGAAGGGCAGAAGTTC
Found at i:33099115 original size:24 final size:24
Alignment explanation
Indices: 33099079--33099125 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
33099069 TATATATACC
33099079 AATTCAATCAATA-TAAATTCAATA
1 AATTCAATCAATACTAAA-TCAATA
33099103 AATTC-ATCAAATACTAAATCAAT
1 AATTCAATC-AATACTAAATCAAT
33099126 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 14 0.67
25 4 0.19
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATACTAAATCAATA
Found at i:33107210 original size:19 final size:19
Alignment explanation
Indices: 33107182--33107225 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
33107172 TGACACAATA
33107182 TAAG-CATGATCGTCACGC
1 TAAGTCATGATCGTCACGC
* *
33107200 TAAGTCATGATCTTCATGC
1 TAAGTCATGATCGTCACGC
33107219 TAAGTCA
1 TAAGTCA
33107226 CTTGGTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (19 bp):
TAAGTCATGATCGTCACGC
Found at i:33108730 original size:49 final size:51
Alignment explanation
Indices: 33108599--33108740 Score: 189
Period size: 49 Copynumber: 2.8 Consensus size: 51
33108589 CGTAACACCA
* * * * *
33108599 TTTGTGGACAAGCCACCACTGACTTACATATAAACTGCCACTGATTACACT
1 TTTGTGGACAAGCCACCACTGATTTGCAGATATACTGCCACTGATTACAAT
**
33108650 TTTGTGGACAAGCCACCACTGATACGCAGATATACTGCCACTGA-TA-AAT
1 TTTGTGGACAAGCCACCACTGATTTGCAGATATACTGCCACTGATTACAAT
* *
33108699 TTTGTGGACAAGCCACCATTGATTTGTAGATATACTGCCACT
1 TTTGTGGACAAGCCACCACTGATTTGCAGATATACTGCCACT
33108741 ACTTCCACCT
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 40 0.50
50 2 0.03
51 38 0.47
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (51 bp):
TTTGTGGACAAGCCACCACTGATTTGCAGATATACTGCCACTGATTACAAT
Found at i:33120362 original size:13 final size:12
Alignment explanation
Indices: 33120344--33120387 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
33120334 CATCTAGGTT
33120344 TCATTTTGTATG
1 TCATTTTGTATG
33120356 ATCATTTTGT-TG
1 -TCATTTTGTATG
33120368 -CATTTTGTATG
1 TCATTTTGTATG
33120379 TTCATTTTG
1 -TCATTTTG
33120388 GTATAGAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 8 0.29
11 2 0.07
12 2 0.07
13 16 0.57
ACGTcount: A:0.16, C:0.09, G:0.16, T:0.59
Consensus pattern (12 bp):
TCATTTTGTATG
Found at i:33124744 original size:56 final size:56
Alignment explanation
Indices: 33124682--33124797 Score: 178
Period size: 56 Copynumber: 2.1 Consensus size: 56
33124672 ATGCTGTTGG
* *
33124682 AAATAGTGGTTTCGGGGCTACAAGTCTAACAAGTAAGTTCGTAAATATTTTTATTT
1 AAATAGTGGTTTCGAGACTACAAGTCTAACAAGTAAGTTCGTAAATATTTTTATTT
* * * *
33124738 AAATAGTGGTTTCGAGACTACAATTCTGACAAGTATGTTTGTAAATATTTTTATTT
1 AAATAGTGGTTTCGAGACTACAAGTCTAACAAGTAAGTTCGTAAATATTTTTATTT
33124794 AAAT
1 AAAT
33124798 TTACTAGTCA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (56 bp):
AAATAGTGGTTTCGAGACTACAAGTCTAACAAGTAAGTTCGTAAATATTTTTATTT
Found at i:33129788 original size:12 final size:12
Alignment explanation
Indices: 33129771--33129797 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
33129761 AAATTAAAAT
33129771 TTATACCTAGGG
1 TTATACCTAGGG
33129783 TTATACCTAGGG
1 TTATACCTAGGG
33129795 TTA
1 TTA
33129798 AAAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (12 bp):
TTATACCTAGGG
Found at i:33136577 original size:16 final size:16
Alignment explanation
Indices: 33136558--33136600 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
33136548 ATTTATTGTC
33136558 TTCACAGTCTAGAGTT
1 TTCACAGTCTAGAGTT
* *
33136574 TTCAAAGTCTATAGTT
1 TTCACAGTCTAGAGTT
*
33136590 TTCACAATCTA
1 TTCACAGTCTA
33136601 CAATCTATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.40
Consensus pattern (16 bp):
TTCACAGTCTAGAGTT
Found at i:33138478 original size:16 final size:18
Alignment explanation
Indices: 33138454--33138486 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
33138444 CCAATATACT
33138454 AATCGACCAAG-GGATGA
1 AATCGACCAAGAGGATGA
33138471 AATC-ACCAAGAGGATG
1 AATCGACCAAGAGGATG
33138487 GGTTTAGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.42, C:0.18, G:0.27, T:0.12
Consensus pattern (18 bp):
AATCGACCAAGAGGATGA
Found at i:33143874 original size:15 final size:16
Alignment explanation
Indices: 33143854--33143889 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
33143844 TTAACCTTGT
33143854 TTAATTAATTTAAT-C
1 TTAATTAATTTAATCC
33143869 TTAATTAATTTAATCC
1 TTAATTAATTTAATCC
33143885 TTAAT
1 TTAAT
33143890 CACCATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAATTAATTTAATCC
Found at i:33144736 original size:9 final size:9
Alignment explanation
Indices: 33144689--33144763 Score: 52
Period size: 9 Copynumber: 8.4 Consensus size: 9
33144679 ATGAATTACT
33144689 TTTTATAAA
1 TTTTATAAA
33144698 -TTTATAACA
1 TTTTATAA-A
*
33144707 TTTTAT--G
1 TTTTATAAA
*
33144714 TTTTAATTAA
1 TTTT-ATAAA
33144724 TTTTATAAA
1 TTTTATAAA
33144733 TTTTA-ATAA
1 TTTTATA-AA
33144742 TTTTA-ATAA
1 TTTTATA-AA
*
33144751 TTTTTTAAA
1 TTTTATAAA
33144760 TTTT
1 TTTT
33144764 TTTATGTTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
7 4 0.07
8 10 0.18
9 31 0.56
10 10 0.18
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (9 bp):
TTTTATAAA
Found at i:33144751 original size:27 final size:25
Alignment explanation
Indices: 33144688--33144763 Score: 80
Period size: 27 Copynumber: 2.9 Consensus size: 25
33144678 AATGAATTAC
* * *
33144688 TTTTTATAAATTTATAACATTTTATG
1 TTTTAATAATTTTATAA-ATTTTATA
33144714 TTTTAATTAATTTTATAAATTTTAATAA
1 TTTTAA-TAATTTTATAAATTTT-AT-A
*
33144742 TTTTAATAATTTTTTAAATTTT
1 TTTTAATAATTTTATAAATTTT
33144764 TTTATGTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
26 10 0.23
27 27 0.63
28 6 0.14
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (25 bp):
TTTTAATAATTTTATAAATTTTATA
Found at i:33144763 original size:18 final size:18
Alignment explanation
Indices: 33144689--33144746 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
33144679 ATGAATTACT
*
33144689 TTTTATAAATTTATAA-CA
1 TTTTATAAATTT-TAATAA
*
33144707 TTTTAT--GTTTTAATTAA
1 TTTTATAAATTTTAA-TAA
33144724 TTTTATAAATTTTAATAA
1 TTTTATAAATTTTAATAA
33144742 TTTTA
1 TTTTA
33144747 ATAATTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
15 3 0.09
16 3 0.09
17 7 0.21
18 14 0.42
19 6 0.18
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (18 bp):
TTTTATAAATTTTAATAA
Done.