Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr08 ID=Chr08-JGI_221_v2.0 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 57128820 ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33 Warning! 677448 characters in sequence are not A, C, G, or T File 116 of 190 Found at i:35154152 original size:3 final size:3 Alignment explanation
Indices: 35154144--35154212 Score: 67 Period size: 3 Copynumber: 23.7 Consensus size: 3 35154134 TAAATGAGTA * 35154144 AAT AAT AAT AAT AAT AAT AAT AAT ACA- AA- AAT AAT AAT -AT GAT 1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT 35154187 -AT AAT AAT -AT AAT AAT GAAT AGAT AA 1 AAT AAT AAT AAT AAT AAT -AAT A-AT AA 35154213 GTATAAAAAG Statistics Matches: 59, Mismatches: 0, Indels: 14 0.81 0.00 0.19 Matches are distributed among these distances: 2 9 0.15 3 43 0.73 4 7 0.12 ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30 Consensus pattern (3 bp): AAT Found at i:35154198 original size:8 final size:9 Alignment explanation
Indices: 35154144--35154212 Score: 67 Period size: 8 Copynumber: 7.9 Consensus size: 9 35154134 TAAATGAGTA 35154144 AATAATAAT 1 AATAATAAT 35154153 AATAATAAT 1 AATAATAAT 35154162 AATAATACA- 1 AATAATA-AT 35154171 AA-AATAAT 1 AATAATAAT * 35154179 AAT-ATGAT 1 AATAATAAT 35154187 -ATAATAAT 1 AATAATAAT 35154195 -ATAATAAT 1 AATAATAAT 35154203 GAATAGATAA 1 -AATA-ATAA 35154213 GTATAAAAAG Statistics Matches: 51, Mismatches: 2, Indels: 12 0.78 0.03 0.18 Matches are distributed among these distances: 7 3 0.06 8 22 0.43 9 18 0.35 10 4 0.08 11 4 0.08 ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30 Consensus pattern (9 bp): AATAATAAT Found at i:35156525 original size:404 final size:404 Alignment explanation
Indices: 35155776--35156574 Score: 1409 Period size: 404 Copynumber: 2.0 Consensus size: 404 35155766 TTATTGTATG 35155776 CAATGAAATGTAATGTTAATAAATGGAAAAGATGCATGCAAAAAGGCGTTGATTCTAGTTCAATT 1 CAATGAAATGTAATGTTAATAAATGGAAAAGATGCATGCAAAAAGGCGTTGATTCTAGTTCAATT * * 35155841 CCATTAGAACAACTTTACTAGGAAACAAGTTTCTTTACATAAAGCAGATACATATACGGTATCAC 66 CCATTAGAACAACTTTACTAGAAAACAAGTTTCTTTACATAAAGCAGATACATATACGGCATCAC * 35155906 CTTCACACTTAAAACCTTAACTTTCCCAAGAAACAAAGCTAATGCTTAGCCCTGGTCTGACTCTA 131 CTTCACACTTAAAACCTTAACTTTCCCAAGAAACAAAGCTAATGCTTAGCCCTGATCTGACTCTA * * * 35155971 ATTCATATTTCAGGCTTTGAACGGCTGGGGTCTGCAAGTGGTCAGCTACTTCTCATACTCGAACC 196 ATTCATATTTCAGGCTTTGAACGGCTGGGGTCTGCAAATGGTCAGCCACTTATCATACTCGAACC * * * * 35156036 AAAGCTTTGCTCATGACGTGGTCCATATCTCTAACCTTCCTCTCTTATAGGCTGTCACCTTTCAC 261 AAAGCTTCGCTCATGACGTGGTCCATATCTCTAACCTGCCTCTCTCACAGGCTGTCACCTTTCAC 35156101 TTGTTGCCTTTTCTTGGACCATATTTGTGTGACCGTGTTATCTTTCGCTTTATCAAGAAACCCAT 326 TTGTTGCCTTTTCTTGGACCATATTTGTGTGACCGTGTTATCTTTCGCTTTATCAAGAAACCCAT 35156166 TTTCCATTACATAT 391 TTTCCATTACATAT * 35156180 CAATGAAATGTAATGTTAATGAATGGAAAAGATGCATGCAAAAAGGCGTTGATTCTAGTTCAATT 1 CAATGAAATGTAATGTTAATAAATGGAAAAGATGCATGCAAAAAGGCGTTGATTCTAGTTCAATT * * * * * 35156245 CCATTAGAACAATTTTACTAGAAAACAAGTTTCTTTAGATAAAGCGGTTACATATACGGCATCGC 66 CCATTAGAACAACTTTACTAGAAAACAAGTTTCTTTACATAAAGCAGATACATATACGGCATCAC * 35156310 CTTCACACTTAAAACCTTAACTTTCCCAAGAAACAAAGCTAATTCTTAGCCCTGATCTGACTCTA 131 CTTCACACTTAAAACCTTAACTTTCCCAAGAAACAAAGCTAATGCTTAGCCCTGATCTGACTCTA * * 35156375 ATTCATATTTCAGGCTTTGAACGGTTGGGGTCTGCAAATGGTCAGCCACTTATCGTACTCGAACC 196 ATTCATATTTCAGGCTTTGAACGGCTGGGGTCTGCAAATGGTCAGCCACTTATCATACTCGAACC 35156440 AAAGCTTCGCTCATGACGTGGTCCATATCTCTAACCTGCCTCTCTCACAGGCTGTCACCTTTCAC 261 AAAGCTTCGCTCATGACGTGGTCCATATCTCTAACCTGCCTCTCTCACAGGCTGTCACCTTTCAC * * 35156505 TTGTTGCCTTTTCTTGGACCATATTTGTGTGACCGTGTTGTCTTTCGCTTTATCAAGAAATCCAT 326 TTGTTGCCTTTTCTTGGACCATATTTGTGTGACCGTGTTATCTTTCGCTTTATCAAGAAACCCAT 35156570 TTTCC 391 TTTCC 35156575 CTGACAAGCT Statistics Matches: 374, Mismatches: 21, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 404 374 1.00 ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33 Consensus pattern (404 bp): CAATGAAATGTAATGTTAATAAATGGAAAAGATGCATGCAAAAAGGCGTTGATTCTAGTTCAATT CCATTAGAACAACTTTACTAGAAAACAAGTTTCTTTACATAAAGCAGATACATATACGGCATCAC CTTCACACTTAAAACCTTAACTTTCCCAAGAAACAAAGCTAATGCTTAGCCCTGATCTGACTCTA ATTCATATTTCAGGCTTTGAACGGCTGGGGTCTGCAAATGGTCAGCCACTTATCATACTCGAACC AAAGCTTCGCTCATGACGTGGTCCATATCTCTAACCTGCCTCTCTCACAGGCTGTCACCTTTCAC TTGTTGCCTTTTCTTGGACCATATTTGTGTGACCGTGTTATCTTTCGCTTTATCAAGAAACCCAT TTTCCATTACATAT Found at i:35164026 original size:31 final size:31 Alignment explanation
Indices: 35163963--35164030 Score: 84 Period size: 31 Copynumber: 2.2 Consensus size: 31 35163953 TTAACAGCCT * * 35163963 AGTGATTTAAATAAAAACTTTTGAGTAATTC 1 AGTGACTTAAATAAAAACTTTTGAATAATTC * * 35163994 AGTGACTTAAATGAAAACTTTCT-AATAGTTC 1 AGTGACTTAAATAAAAACTTT-TGAATAATTC 35164025 AGTGAC 1 AGTGAC 35164031 CATTTTTTAA Statistics Matches: 32, Mismatches: 4, Indels: 2 0.84 0.11 0.05 Matches are distributed among these distances: 31 31 0.97 32 1 0.03 ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35 Consensus pattern (31 bp): AGTGACTTAAATAAAAACTTTTGAATAATTC Found at i:35166294 original size:46 final size:46 Alignment explanation
Indices: 35166227--35166318 Score: 184 Period size: 46 Copynumber: 2.0 Consensus size: 46 35166217 TCATACCAAG 35166227 CTGAGCTGCCATTGCCATAACTCAAAAGACAACAAAGCTTGAGCAA 1 CTGAGCTGCCATTGCCATAACTCAAAAGACAACAAAGCTTGAGCAA 35166273 CTGAGCTGCCATTGCCATAACTCAAAAGACAACAAAGCTTGAGCAA 1 CTGAGCTGCCATTGCCATAACTCAAAAGACAACAAAGCTTGAGCAA 35166319 GCTGTCTTCA Statistics Matches: 46, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 46 46 1.00 ACGTcount: A:0.39, C:0.26, G:0.17, T:0.17 Consensus pattern (46 bp): CTGAGCTGCCATTGCCATAACTCAAAAGACAACAAAGCTTGAGCAA Found at i:35168120 original size:42 final size:42 Alignment explanation
Indices: 35168045--35168271 Score: 235 Period size: 42 Copynumber: 5.7 Consensus size: 42 35168035 GAAAAAAATA ** 35168045 CCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTTTCTAAGCG 1 CCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCG * * 35168087 CCGCGAAAGAACATGATCTTTAGCGGCGTTTTTTT-TAAGCG 1 CCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCG * * 35168128 CCTCTAAAGAACATGTTCTTTAGCGGCATTTTTTTCTAAGCG 1 CCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCG * * 35168170 CCGCTAAAGAA-A-G--C---A---GCGTTTTCTTCTAAGCA 1 CCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCG * * * * 35168202 CCGTTAAAGAACATGTTCTTTAGTGGCGATTTTTAT-TAAGTG 1 CCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTTCTAAGCG * * 35168244 CCGCTAAAGAACATGATCCTTAGCGGCG 1 CCGCTAAAGAACATGTTCTTTAGCGGCG 35168272 CCGCTAGAGA Statistics Matches: 152, Mismatches: 21, Indels: 24 0.77 0.11 0.12 Matches are distributed among these distances: 32 24 0.16 33 1 0.01 34 1 0.01 35 1 0.01 36 1 0.01 38 1 0.01 39 1 0.01 40 1 0.01 41 38 0.25 42 78 0.51 43 5 0.03 ACGTcount: A:0.25, C:0.21, G:0.22, T:0.33 Consensus pattern (42 bp): CCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCG Found at i:35168294 original size:28 final size:28 Alignment explanation
Indices: 35168243--35168300 Score: 80 Period size: 28 Copynumber: 2.1 Consensus size: 28 35168233 TTTATTAAGT * 35168243 GCCGCTAAAGAACATGATCCTTAGCGGC 1 GCCGCTAAAGAACATAATCCTTAGCGGC * * * 35168271 GCCGCTAGAGATCATAATCTTTAGCGGC 1 GCCGCTAAAGAACATAATCCTTAGCGGC 35168299 GC 1 GC 35168301 TTTTTTTACA Statistics Matches: 26, Mismatches: 4, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 28 26 1.00 ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21 Consensus pattern (28 bp): GCCGCTAAAGAACATAATCCTTAGCGGC Found at i:35168753 original size:21 final size:21 Alignment explanation
Indices: 35168729--35168779 Score: 66 Period size: 21 Copynumber: 2.4 Consensus size: 21 35168719 TTCTTTTAAA * * 35168729 CCTCTGCTTCTCTCGTTGCAG 1 CCTCTGCTTCCCTCGCTGCAG * 35168750 CCTCTGCTTCCCTCGCTGCCG 1 CCTCTGCTTCCCTCGCTGCAG * 35168771 CCTCCGCTT 1 CCTCTGCTT 35168780 TAAGTTGTAG Statistics Matches: 26, Mismatches: 4, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 21 26 1.00 ACGTcount: A:0.02, C:0.47, G:0.18, T:0.33 Consensus pattern (21 bp): CCTCTGCTTCCCTCGCTGCAG Found at i:35174249 original size:26 final size:26 Alignment explanation
Indices: 35174217--35174274 Score: 89 Period size: 26 Copynumber: 2.2 Consensus size: 26 35174207 TTAAAACGCC * 35174217 AGTTATAACTATAAATGAGTTATGTA 1 AGTTATAACCATAAATGAGTTATGTA * * 35174243 ATTTATAACCATAAATGATTTATGTA 1 AGTTATAACCATAAATGAGTTATGTA 35174269 AGTTAT 1 AGTTAT 35174275 GTAAGTTATT Statistics Matches: 28, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 26 28 1.00 ACGTcount: A:0.41, C:0.05, G:0.12, T:0.41 Consensus pattern (26 bp): AGTTATAACCATAAATGAGTTATGTA Found at i:35174276 original size:9 final size:9 Alignment explanation
Indices: 35174262--35174536 Score: 248 Period size: 9 Copynumber: 31.4 Consensus size: 9 35174252 CATAAATGAT 35174262 TTATGTAAG 1 TTATGTAAG 35174271 TTATGTAAG 1 TTATGTAAG * * 35174280 TTATTTAGG 1 TTATGTAAG ** 35174289 CAATGT-A- 1 TTATGTAAG * 35174296 TTATGTAAA 1 TTATGTAAG * 35174305 TAATGTAAG 1 TTATGTAAG * 35174314 TTA-GGAAGG 1 TTATGTAA-G 35174323 TTATGT-A- 1 TTATGTAAG 35174330 TTATGTAAG 1 TTATGTAAG * 35174339 TTATTTAAG 1 TTATGTAAG 35174348 TTATGTAAG 1 TTATGTAAG * * 35174357 TTATTTAAT 1 TTATGTAAG 35174366 TTATGTAAG 1 TTATGTAAG 35174375 TTATGTAAG 1 TTATGTAAG * * 35174384 TTATTTAGG 1 TTATGTAAG ** 35174393 CAATGT-A- 1 TTATGTAAG * 35174400 TTATGTAAA 1 TTATGTAAG * 35174409 TAATGTAAG 1 TTATGTAAG * 35174418 TTA-GGAAGG 1 TTATGTAA-G 35174427 TTATGT-A- 1 TTATGTAAG * 35174434 TTGTGTAAG 1 TTATGTAAG * 35174443 TTATTTAAG 1 TTATGTAAG 35174452 TTATGTAAG 1 TTATGTAAG 35174461 TTATGTAAG 1 TTATGTAAG * * 35174470 TTATTTAAT 1 TTATGTAAG 35174479 TTATGTAAG 1 TTATGTAAG 35174488 TTATGTAAG 1 TTATGTAAG 35174497 TTATGTAAG 1 TTATGTAAG * 35174506 TTAAT-TAAT 1 TT-ATGTAAG 35174515 TTATGTAAG 1 TTATGTAAG 35174524 TTATGTAAG 1 TTATGTAAG 35174533 TTAT 1 TTAT 35174537 TTAGGCAATG Statistics Matches: 210, Mismatches: 42, Indels: 28 0.75 0.15 0.10 Matches are distributed among these distances: 7 19 0.09 8 12 0.06 9 175 0.83 10 4 0.02 ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46 Consensus pattern (9 bp): TTATGTAAG Found at i:35174311 original size:34 final size:34 Alignment explanation
Indices: 35174262--35174530 Score: 198 Period size: 34 Copynumber: 7.7 Consensus size: 34 35174252 CATAAATGAT * 35174262 TTATGTAAGTTATGTAAGTTATTTAGGCAATGTA 1 TTATGTAAGTTATGTAAGTTATGTAGGCAATGTA * * * * ** 35174296 TTATGTAAATAATGTAAGTTAGGAAGGTTATGTA 1 TTATGTAAGTTATGTAAGTTATGTAGGCAATGTA * * ** * 35174330 TTATGTAAGTTATTTAAGTTATGTAAGTTATTTAA 1 TTATGTAAGTTATGTAAGTTATGTAGGCAATGT-A * 35174365 TTTATGTAAGTTATGTAAGTTATTTAGGCAATGTA 1 -TTATGTAAGTTATGTAAGTTATGTAGGCAATGTA * * * * ** 35174400 TTATGTAAATAATGTAAGTTAGGAAGGTTATGTA 1 TTATGTAAGTTATGTAAGTTATGTAGGCAATGTA * * * ** 35174434 TTGTGTAAGTTATTTAAGTTATGTAAGTTATGTAA 1 TTATGTAAGTTATGTAAGTTATGTAGGCAATGT-A * * * ** 35174469 GTTATTTAATTTATGTAAGTTATGTAAGTTATGTAA 1 -TTATGTAAGTTATGTAAGTTATGTAGGCAATGT-A * 35174505 GTTAAT-TAATTTATGTAAGTTATGTA 1 -TT-ATGTAAGTTATGTAAGTTATGTA 35174531 AGTTATTTAG Statistics Matches: 192, Mismatches: 38, Indels: 8 0.81 0.16 0.03 Matches are distributed among these distances: 34 106 0.55 35 3 0.02 36 81 0.42 37 2 0.01 ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46 Consensus pattern (34 bp): TTATGTAAGTTATGTAAGTTATGTAGGCAATGTA Found at i:35174398 original size:104 final size:104 Alignment explanation
Indices: 35174260--35174491 Score: 419 Period size: 104 Copynumber: 2.2 Consensus size: 104 35174250 ACCATAAATG 35174260 ATTTATGTAAGTTATGTAAGTTATTTAGGCAATGTATTATGTAAATAATGTAAGTTAGGAAGGTT 1 ATTTATGTAAGTTATGTAAGTTATTTAGGCAATGTATTATGTAAATAATGTAAGTTAGGAAGGTT * 35174325 ATGTATTATGTAAGTTATTTAAGTTATGTAAGTTATTTA 66 ATGTATTATGTAAGTTATTTAAGTTATGTAAGTTATGTA 35174364 ATTTATGTAAGTTATGTAAGTTATTTAGGCAATGTATTATGTAAATAATGTAAGTTAGGAAGGTT 1 ATTTATGTAAGTTATGTAAGTTATTTAGGCAATGTATTATGTAAATAATGTAAGTTAGGAAGGTT * 35174429 ATGTATTGTGTAAGTTATTTAAGTTATGTAAGTTATGTA 66 ATGTATTATGTAAGTTATTTAAGTTATGTAAGTTATGTA * * * 35174468 AGTTATTTAATTTATGTAAGTTAT 1 ATTTATGTAAGTTATGTAAGTTAT 35174492 GTAAGTTATG Statistics Matches: 123, Mismatches: 5, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 104 123 1.00 ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46 Consensus pattern (104 bp): ATTTATGTAAGTTATGTAAGTTATTTAGGCAATGTATTATGTAAATAATGTAAGTTAGGAAGGTT ATGTATTATGTAAGTTATTTAAGTTATGTAAGTTATGTA Found at i:35174695 original size:9 final size:9 Alignment explanation
Indices: 35174631--35174761 Score: 66 Period size: 9 Copynumber: 15.4 Consensus size: 9 35174621 TATTATGTTA * 35174631 TTATATAAG 1 TTATGTAAG * 35174640 TTATGCAAG 1 TTATGTAAG * 35174649 TTATATAAG 1 TTATGTAAG * 35174658 TTATTTAAG 1 TTATGTAAG ** 35174667 TTGGGTAAG 1 TTATGTAAG 35174676 TGT-TGT-A- 1 T-TATGTAAG 35174683 TTATGTAAG 1 TTATGTAAG 35174692 TTATGT-A- 1 TTATGTAAG 35174699 TTATGTAA- 1 TTATGTAAG 35174707 TATATGTAAG 1 T-TATGTAAG ** 35174717 -T-TGTATT 1 TTATGTAAG * 35174724 TTATGTAAA 1 TTATGTAAG * * 35174733 TTCTAT-A- 1 TTATGTAAG * 35174740 TTATGTATG 1 TTATGTAAG 35174749 TTATGTAAG 1 TTATGTAAG 35174758 TTAT 1 TTAT 35174762 TATGCAAGAT Statistics Matches: 92, Mismatches: 19, Indels: 22 0.69 0.14 0.17 Matches are distributed among these distances: 6 1 0.01 7 18 0.20 8 8 0.09 9 64 0.70 10 1 0.01 ACGTcount: A:0.32, C:0.02, G:0.18, T:0.49 Consensus pattern (9 bp): TTATGTAAG Found at i:35174727 original size:25 final size:25 Alignment explanation
Indices: 35174684--35174731 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 35174674 AGTGTTGTAT * 35174684 TATGTAAGTTATGTATTATGTAATA 1 TATGTAAGTTATATATTATGTAATA * * 35174709 TATGTAAGTTGTATTTTATGTAA 1 TATGTAAGTTATATATTATGTAA 35174732 ATTCTATATT Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50 Consensus pattern (25 bp): TATGTAAGTTATATATTATGTAATA Found at i:35176364 original size:191 final size:191 Alignment explanation
Indices: 35176040--35176437 Score: 616 Period size: 191 Copynumber: 2.1 Consensus size: 191 35176030 AAGCAACACA 35176040 GAATTTAAAGAGAAAGGAAAAACAAAGCGAGCATTAGAGAAAGAAAAAATCAAACAAAAAAATGA 1 GAATTTAAAGAGAAAGGAAAAACAAAGCGAGCATTAGAGAAAGAAAAAATCAAACAAAAAAATGA * * * 35176105 ACAGCCATATACGTATTCAACGGAGAAATTAGGGATTTGGAAAGATTTTTACCAGTCAGCCCAGA 66 ACAGCCATATACGGAGTCAACGGAGAAATTAGGGATTTGGAAAGATTTTTACCAATCAGCCCAGA * * * * * 35176170 CGAGAAGCAACATTCGATCGAGAAGAGGGGAAATCGTCGTTGAAGGGGTGAAAGGTCTATG 131 CGAGAAGCAACATTCAACCGAGAAGAGGGGAAATCGTCGTTGAAGAGGTAAAAGGTCTAGG * * * 35176231 GAATTTAAAGAGAAAGGAAAAACAAAGCGGGCATTAGAGAAAGAAAAAATCGAACAGAAAAATGA 1 GAATTTAAAGAGAAAGGAAAAACAAAGCGAGCATTAGAGAAAGAAAAAATCAAACAAAAAAATGA * * 35176296 ACAGCTATATACGGAGTCAACGGAGAAATTAGGGATTTGGAAAGTTTTTTACCAATCAGCCCAGA 66 ACAGCCATATACGGAGTCAACGGAGAAATTAGGGATTTGGAAAGATTTTTACCAATCAGCCCAGA ** * * 35176361 CGAGAAGTGATATTCAACCGAGAAGAGGGGAAATCGTCGTTGAAGAGGTAAAATGTCTAGG 131 CGAGAAGCAACATTCAACCGAGAAGAGGGGAAATCGTCGTTGAAGAGGTAAAAGGTCTAGG * 35176422 GATTTGTAAGAGAGAA 1 GAATT-TAA-AGAGAA 35176438 GAAAGATGGA Statistics Matches: 187, Mismatches: 18, Indels: 2 0.90 0.09 0.01 Matches are distributed among these distances: 191 178 0.95 192 3 0.02 193 6 0.03 ACGTcount: A:0.44, C:0.12, G:0.26, T:0.18 Consensus pattern (191 bp): GAATTTAAAGAGAAAGGAAAAACAAAGCGAGCATTAGAGAAAGAAAAAATCAAACAAAAAAATGA ACAGCCATATACGGAGTCAACGGAGAAATTAGGGATTTGGAAAGATTTTTACCAATCAGCCCAGA CGAGAAGCAACATTCAACCGAGAAGAGGGGAAATCGTCGTTGAAGAGGTAAAAGGTCTAGG Found at i:35177093 original size:21 final size:21 Alignment explanation
Indices: 35177069--35177112 Score: 54 Period size: 21 Copynumber: 2.1 Consensus size: 21 35177059 AACCCCTATC * * 35177069 CCTTAATCTCCAACC-TCTAAA 1 CCTTAAACTCAAACCAT-TAAA 35177090 CCTTAAACTCAAACCATTAAA 1 CCTTAAACTCAAACCATTAAA 35177111 CC 1 CC 35177113 AAGTACCCTT Statistics Matches: 20, Mismatches: 2, Indels: 2 0.83 0.08 0.08 Matches are distributed among these distances: 21 19 0.95 22 1 0.05 ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25 Consensus pattern (21 bp): CCTTAAACTCAAACCATTAAA Found at i:35177827 original size:20 final size:20 Alignment explanation
Indices: 35177798--35177835 Score: 58 Period size: 20 Copynumber: 1.9 Consensus size: 20 35177788 GCTCAAAACG * 35177798 AAACGTTACGTTTCGGTTTA 1 AAACGATACGTTTCGGTTTA * 35177818 AAACGATACGTTTTGGTT 1 AAACGATACGTTTCGGTT 35177836 AAGATTTTTT Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 20 16 1.00 ACGTcount: A:0.26, C:0.13, G:0.21, T:0.39 Consensus pattern (20 bp): AAACGATACGTTTCGGTTTA Found at i:35178150 original size:113 final size:113 Alignment explanation
Indices: 35177818--35178449 Score: 627 Period size: 113 Copynumber: 5.7 Consensus size: 113 35177808 TTTCGGTTTA * * * * 35177818 AAACGATACGTTTTGGTTAAGATTTTTTTGCGACGCTTTGTATAATGCGCCGCTAATGATGTACT 1 AAACGATGCGTTTTGGTTAAGA-TATTTTGCGGCGCTTT-TATAATGCGCCGCTAATGATGTGCT * * * * * 35177883 TTCGCAGCGTTTCACTCT-AGCGCCACTAATTCTAAAATACCTCAAGACC 64 TTAGCGGCGTTTTATTATAAGCGCCACTAATTCTAAAATACCTCAAGACC * * * ** * * ** 35177932 AAATGATGCGTTTTGGTTAATATTTTTTATGGCGCCTTTCATAATGCGCCGGTAATTCTGTGCTT 1 AAACGATGCGTTTTGGTTAAGATATTTTGCGGCG-CTTTTATAATGCGCCGCTAATGATGTGCTT * ** * * * 35177997 TAGCGGCATTTGT-CCATAAGCACCATTAATTCTAATATACCTCAAGACC 65 TAGCGGCGTTT-TATTATAAGCGCCACTAATTCTAAAATACCTCAAGACC * * * 35178046 AAACGCTGCGTTTTGGTAAAGATATTTTACGGCGCTTTTATAATGCGCCGCTAATGATGTGCTTT 1 AAACGATGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTATAATGCGCCGCTAATGATGTGCTTT 35178111 AGCGGCGTTTTATTATAAGCGCCACTAATTCTAAAATACCTCAAGACC 66 AGCGGCGTTTTATTATAAGCGCCACTAATTCTAAAATACCTCAAGACC * * * * * 35178159 AAACGATGCGTTTTTGTTAATAT-TTTTGCGGCGCTTTTTATATTGCGCCGCTAATGATGTTCGT 1 AAACGATGCGTTTTGGTTAAGATATTTTGCGGCGC-TTTTATAATGCGCCGCTAATGATGTGCTT * * 35178223 TAGCGGCGTTTCATTATAAGCGCGACTAATTCTAAAATACCTCAAGACC 65 TAGCGGCGTTTTATTATAAGCGCCACTAATTCTAAAATACCTCAAGACC * * * * 35178272 AAATGATGCGTTTTTGTTAATATA-TTTGCGGCGCTTTTTATAAT--GCAGC-----A-----TT 1 AAACGATGCGTTTTGGTTAAGATATTTTGCGGCGC-TTTTATAATGCGCCGCTAATGATGTGCTT * * * * 35178324 T-GCGGCGTTTT-TCCATAAGCGCTACTAATTGTAATATACCTCAAGACC 65 TAGCGGCGTTTTAT-TATAAGCGCCACTAATTCTAAAATACCTCAAGACC * * * * * 35178372 AAACGCTGCGTTTTGGTTAAGATATTCTGCGGCGCTTTT-TGCATTGCACCGCTAATTATGTGCT 1 AAACGATGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTAT--AATGCGCCGCTAATGATGTGCT 35178436 TTAGCGGCGTTTTA 64 TTAGCGGCGTTTTA 35178450 CGAAGATCGC Statistics Matches: 431, Mismatches: 63, Indels: 47 0.80 0.12 0.09 Matches are distributed among these distances: 99 2 0.00 100 64 0.15 101 13 0.03 103 3 0.01 106 1 0.00 108 1 0.00 111 4 0.01 112 11 0.03 113 243 0.56 114 89 0.21 ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36 Consensus pattern (113 bp): AAACGATGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTATAATGCGCCGCTAATGATGTGCTTT AGCGGCGTTTTATTATAAGCGCCACTAATTCTAAAATACCTCAAGACC Found at i:35190088 original size:21 final size:20 Alignment explanation
Indices: 35190052--35190092 Score: 64 Period size: 21 Copynumber: 2.0 Consensus size: 20 35190042 CACTAAATAG * 35190052 GTTAATTATAATTAATTTAA 1 GTTAATTAAAATTAATTTAA 35190072 GTTAATTAAAGATTAATTTAA 1 GTTAATTAAA-ATTAATTTAA 35190093 ATAAGGTTAA Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 20 9 0.47 21 10 0.53 ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46 Consensus pattern (20 bp): GTTAATTAAAATTAATTTAA Found at i:35195390 original size:2 final size:2 Alignment explanation
Indices: 35195383--35195428 Score: 92 Period size: 2 Copynumber: 23.0 Consensus size: 2 35195373 TGAAGTTAAT 35195383 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 35195425 TA TA 1 TA TA 35195429 CACGTACATG Statistics Matches: 44, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 44 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): TA Found at i:35195561 original size:17 final size:18 Alignment explanation
Indices: 35195528--35195563 Score: 56 Period size: 18 Copynumber: 2.1 Consensus size: 18 35195518 TAATGAATAC * 35195528 ATAAAATAATATTATATA 1 ATAAAAGAATATTATATA 35195546 ATAAAAGAAT-TTATATA 1 ATAAAAGAATATTATATA 35195563 A 1 A 35195564 AAATTAAGTT Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 17 8 0.47 18 9 0.53 ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36 Consensus pattern (18 bp): ATAAAAGAATATTATATA Found at i:35196725 original size:7 final size:7 Alignment explanation
Indices: 35196713--35196765 Score: 61 Period size: 7 Copynumber: 7.0 Consensus size: 7 35196703 TTAAAATGGA 35196713 TTATTTT 1 TTATTTT 35196720 TTATTTT 1 TTATTTT 35196727 TTATTATT 1 TTATT-TT 35196735 ATTATTTT 1 -TTATTTT 35196743 TTATATTT 1 TTAT-TTT * 35196751 TTGTTTAT 1 TTATTT-T 35196759 TTATTTT 1 TTATTTT 35196766 CGATTTGGGC Statistics Matches: 40, Mismatches: 2, Indels: 8 0.80 0.04 0.16 Matches are distributed among these distances: 7 19 0.47 8 16 0.40 9 5 0.12 ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79 Consensus pattern (7 bp): TTATTTT Found at i:35196761 original size:16 final size:15 Alignment explanation
Indices: 35196713--35196762 Score: 57 Period size: 16 Copynumber: 3.3 Consensus size: 15 35196703 TTAAAATGGA 35196713 TTAT-TTTTTATTTT 1 TTATATTTTTATTTT * 35196727 TTATTATTATTATTTT 1 TTA-TATTTTTATTTT * 35196743 TTATATTTTTGTTTAT 1 TTATATTTTTATTT-T 35196759 TTAT 1 TTAT 35196763 TTTCGATTTG Statistics Matches: 30, Mismatches: 3, Indels: 4 0.81 0.08 0.11 Matches are distributed among these distances: 14 3 0.10 15 10 0.33 16 17 0.57 ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78 Consensus pattern (15 bp): TTATATTTTTATTTT Found at i:35197205 original size:111 final size:111 Alignment explanation
Indices: 35197008--35197228 Score: 370 Period size: 111 Copynumber: 2.0 Consensus size: 111 35196998 TTCCCTACTC * * * * 35197008 TTGAAGATAAGATTCACCGTCTCCGATCTGCTCCGCTATTGCTTAGGGAGATAAGATCTGTGATT 1 TTGAAGATAAGATTCACCGTCTCCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATT * 35197073 TCCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTG 66 TCCAACCTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTG * * * 35197119 TTGAAGATAAGATTCACCGTCTTCGATCTGCTCTACTACTGCTTAGGGAGACAAGATTTGTAATT 1 TTGAAGATAAGATTCACCGTCTCCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATT 35197184 TCCAACCTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTT 66 TCCAACCTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTT 35197229 AAATCTGCTT Statistics Matches: 102, Mismatches: 8, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 111 102 1.00 ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30 Consensus pattern (111 bp): TTGAAGATAAGATTCACCGTCTCCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATT TCCAACCTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTG Found at i:35197902 original size:132 final size:131 Alignment explanation
Indices: 35197665--35197960 Score: 502 Period size: 132 Copynumber: 2.3 Consensus size: 131 35197655 NNNNNNNNNN 35197665 ATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGACTTCAATGTACTCCACTTAACCACAGG 1 ATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGACTTCAATGTACTCCACTTAACCACAGG 35197730 GAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC 66 GAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC 35197795 A 131 A * * * 35197796 ATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTATAACCATAG 1 ATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGACTTCAATGTACTCCACT-TAACCACAG * 35197861 GGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATCTT 65 GGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT * 35197926 TA 130 CA * *** 35197928 ATCTATTTCACTGCTGCCCAGGGAGATAGAATT 1 ATCTATTCCACTGCCAACCAGGGAGATAGAATT 35197961 CAAAATTCTC Statistics Matches: 155, Mismatches: 9, Indels: 1 0.94 0.05 0.01 Matches are distributed among these distances: 131 53 0.34 132 102 0.66 ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28 Consensus pattern (131 bp): ATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGACTTCAATGTACTCCACTTAACCACAGG GAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC A Found at i:35198171 original size:88 final size:89 Alignment explanation
Indices: 35198006--35198267 Score: 316 Period size: 88 Copynumber: 3.0 Consensus size: 89 35197996 GATAGGACTG * * * * * 35198006 GTATCTTCGATCTGCTTCGCTGTTAATACAGGAAGGCCAGATCTGCTATCTTTAACCTGCTCCAT 1 GTATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCAC * 35198071 TGCAACCGAGGGAGGCAAGGC-TA 66 TGCAACCAAGGGAGGCAAGGCTTA * * * * * * 35198094 GTATCTTCGATCTGCTTTGCTGTCAATGTAGGAAGGTAAGATCTACTATCTTTATCCCGCTCTAC 1 GTATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCAC * * 35198159 TGTAACCAAGGGAGGCAAGGCTTT 66 TGCAACCAAGGGAGGCAAGGCTTA * * * 35198183 GT-T-TTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTGCTAT-TTTCAATCTGCTCCA 1 GTATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTT-AACCCGCTCCA * * 35198245 CTGCAACCGAGGGAGGTAAGGCT 65 CTGCAACCAAGGGAGGCAAGGCT 35198268 GGTGATTTCA Statistics Matches: 146, Mismatches: 26, Indels: 5 0.82 0.15 0.03 Matches are distributed among these distances: 86 3 0.02 87 66 0.45 88 74 0.51 89 3 0.02 ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29 Consensus pattern (89 bp): GTATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCAC TGCAACCAAGGGAGGCAAGGCTTA Found at i:35198342 original size:22 final size:22 Alignment explanation
Indices: 35198314--35198390 Score: 109 Period size: 22 Copynumber: 3.5 Consensus size: 22 35198304 TTGTATGAAA 35198314 CATGAGAGCTTAGTACGTTAGC 1 CATGAGAGCTTAGTACGTTAGC 35198336 CATGAGAGCTTAGTACGTTAGC 1 CATGAGAGCTTAGTACGTTAGC * * * ** 35198358 CATGAGGGTTTAGTTCGTTAAA 1 CATGAGAGCTTAGTACGTTAGC 35198380 CATGAGAGCTT 1 CATGAGAGCTT 35198391 TTGCATGAAT Statistics Matches: 48, Mismatches: 7, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 22 48 1.00 ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30 Consensus pattern (22 bp): CATGAGAGCTTAGTACGTTAGC Found at i:35199532 original size:8 final size:7 Alignment explanation
Indices: 35199474--35199532 Score: 68 Period size: 7 Copynumber: 8.3 Consensus size: 7 35199464 CCTTAGCCTC 35199474 TTCATTT 1 TTCATTT 35199481 TT-ACTTT 1 TTCA-TTT * 35199488 TTCAGTT 1 TTCATTT 35199495 TTCATTT 1 TTCATTT 35199502 TTCA-TT 1 TTCATTT 35199508 TTCATTTT 1 TTCA-TTT 35199516 TTCATTT 1 TTCATTT 35199523 TTCATATT 1 TTCAT-TT 35199531 TT 1 TT 35199533 TTTCAACTTA Statistics Matches: 45, Mismatches: 2, Indels: 9 0.80 0.04 0.16 Matches are distributed among these distances: 6 7 0.16 7 27 0.60 8 11 0.24 ACGTcount: A:0.15, C:0.14, G:0.02, T:0.69 Consensus pattern (7 bp): TTCATTT Found at i:35200445 original size:7 final size:7 Alignment explanation
Indices: 35200428--35200460 Score: 57 Period size: 7 Copynumber: 4.6 Consensus size: 7 35200418 TCTCCTTTTG 35200428 TTTTTCTT 1 TTTTTC-T 35200436 TTTTTCT 1 TTTTTCT 35200443 TTTTTCT 1 TTTTTCT 35200450 TTTTTCT 1 TTTTTCT 35200457 TTTT 1 TTTT 35200461 ATCATTTTCA Statistics Matches: 25, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 7 19 0.76 8 6 0.24 ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88 Consensus pattern (7 bp): TTTTTCT Found at i:35204870 original size:17 final size:18 Alignment explanation
Indices: 35204837--35204872 Score: 56 Period size: 18 Copynumber: 2.1 Consensus size: 18 35204827 TAATGAATAC * 35204837 ATAAAATAATATTATATA 1 ATAAAAGAATATTATATA 35204855 ATAAAAGAAT-TTATATA 1 ATAAAAGAATATTATATA 35204872 A 1 A 35204873 AAATTAAGTT Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 17 8 0.47 18 9 0.53 ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36 Consensus pattern (18 bp): ATAAAAGAATATTATATA Found at i:35211283 original size:23 final size:22 Alignment explanation
Indices: 35211240--35211283 Score: 54 Period size: 23 Copynumber: 1.9 Consensus size: 22 35211230 TTTCAAGTCA 35211240 ATATTCAATTCAATTCCACACAT 1 ATATTCAATTCAATT-CACACAT 35211263 ATATTCATTATTCAATT-ACAC 1 ATATTCA--ATTCAATTCACAC 35211284 TTAATCGTTA Statistics Matches: 19, Mismatches: 0, Indels: 4 0.83 0.00 0.17 Matches are distributed among these distances: 23 11 0.58 25 8 0.42 ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39 Consensus pattern (22 bp): ATATTCAATTCAATTCACACAT Found at i:35211408 original size:23 final size:23 Alignment explanation
Indices: 35211382--35211480 Score: 162 Period size: 23 Copynumber: 4.3 Consensus size: 23 35211372 ATAAGTGCCA 35211382 CACTGATATGTAGCCGAAGCTAC 1 CACTGATATGTAGCCGAAGCTAC * * 35211405 CACTGAAATGTAGCCAAAGCTAC 1 CACTGATATGTAGCCGAAGCTAC * * 35211428 CACTGAAATGTAGCTGAAGCTAC 1 CACTGATATGTAGCCGAAGCTAC 35211451 CACTGATATGTAGCCGAAGCTAC 1 CACTGATATGTAGCCGAAGCTAC 35211474 CACTGAT 1 CACTGAT 35211481 CAATAACACT Statistics Matches: 70, Mismatches: 6, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 23 70 1.00 ACGTcount: A:0.33, C:0.25, G:0.20, T:0.21 Consensus pattern (23 bp): CACTGATATGTAGCCGAAGCTAC Found at i:35211975 original size:30 final size:30 Alignment explanation
Indices: 35211927--35211985 Score: 73 Period size: 30 Copynumber: 2.0 Consensus size: 30 35211917 TCCTTGACTC * 35211927 AAACTTTGGCAAAATTACAATTTTTCCCCT 1 AAACTTTGGCAAAATTACAATTTTGCCCCT * * * * 35211957 AAACTTTTGCATATTTACACTTTTGCCCC 1 AAACTTTGGCAAAATTACAATTTTGCCCC 35211986 AAAGCTCGTA Statistics Matches: 24, Mismatches: 5, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 30 24 1.00 ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39 Consensus pattern (30 bp): AAACTTTGGCAAAATTACAATTTTGCCCCT Found at i:35216436 original size:94 final size:93 Alignment explanation
Indices: 35216188--35216440 Score: 262 Period size: 94 Copynumber: 2.7 Consensus size: 93 35216178 CAATCAAGAG * * * 35216188 AGTTCGCTAGGACATTAAACATAGGGTTACATGTGTAAGACCTTAGTTCAGCTATA-AAATCATG 1 AGTTCGCCAGGACATTAAACATA-GGTTACATGTGTAAAACCTTAGTTCAGCTATAGCAA-CATG * * * 35216252 TGGAGTCCGTCGGGATAGTAAACACGGGGT 64 TAGAATCCGTCGGGATAGTAAACACAGGGT * * ** * 35216282 AGTTCGCCAGGACATTAAACATGGGGTTACTTGTGTAACGCCTTA-TCTCAGCTATGGCAACATG 1 AGTTCGCCAGGACATTAAACAT-AGGTTACATGTGTAAAACCTTAGT-TCAGCTATAGCAACATG * * 35216346 TAGAATCTG-CAGTGATAGTAAACACAGGGT 64 TAGAATCCGTC-GGGATAGTAAACACAGGGT * * * * 35216376 AG-TCTGCCGGGACATTAAACAATAGGTTACATGTGTAAAACCATAGTTCGGTTATAGCAACATG 1 AGTTC-GCCAGGACATTAAAC-ATAGGTTACATGTGTAAAACCTTAGTTCAGCTATAGCAACATG 35216440 T 64 T 35216441 GAAGTCCATA Statistics Matches: 131, Mismatches: 21, Indels: 14 0.79 0.13 0.08 Matches are distributed among these distances: 93 4 0.03 94 122 0.93 95 5 0.04 ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27 Consensus pattern (93 bp): AGTTCGCCAGGACATTAAACATAGGTTACATGTGTAAAACCTTAGTTCAGCTATAGCAACATGTA GAATCCGTCGGGATAGTAAACACAGGGT Found at i:35220906 original size:7 final size:7 Alignment explanation
Indices: 35220894--35220918 Score: 50 Period size: 7 Copynumber: 3.6 Consensus size: 7 35220884 CATTAAACAT 35220894 AACTATC 1 AACTATC 35220901 AACTATC 1 AACTATC 35220908 AACTATC 1 AACTATC 35220915 AACT 1 AACT 35220919 TTTGGCCACA Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 18 1.00 ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28 Consensus pattern (7 bp): AACTATC Found at i:35228260 original size:4 final size:4 Alignment explanation
Indices: 35228251--35228282 Score: 55 Period size: 4 Copynumber: 8.0 Consensus size: 4 35228241 CCAAGGTACT * 35228251 CATA CATA CATA CATA CATA CATA CGTA CATA 1 CATA CATA CATA CATA CATA CATA CATA CATA 35228283 TATGAGGATT Statistics Matches: 26, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 4 26 1.00 ACGTcount: A:0.47, C:0.25, G:0.03, T:0.25 Consensus pattern (4 bp): CATA Found at i:35237171 original size:28 final size:29 Alignment explanation
Indices: 35237116--35237178 Score: 74 Period size: 28 Copynumber: 2.2 Consensus size: 29 35237106 TAATTTTTTT * 35237116 AATTGTTTAGAATTTTTAAAAATTTATAA 1 AATTGTTTAGAATTTTTAAAAATATATAA * * * 35237145 AATT-TTTAGATTTTTTTAGAATATATAA 1 AATTGTTTAGAATTTTTAAAAATATATAA 35237173 ACATTG 1 A-ATTG 35237179 AGACCTTAAT Statistics Matches: 28, Mismatches: 4, Indels: 3 0.80 0.11 0.09 Matches are distributed among these distances: 28 21 0.75 29 7 0.25 ACGTcount: A:0.41, C:0.02, G:0.08, T:0.49 Consensus pattern (29 bp): AATTGTTTAGAATTTTTAAAAATATATAA Found at i:35240394 original size:2 final size:2 Alignment explanation
Indices: 35240387--35240449 Score: 126 Period size: 2 Copynumber: 31.5 Consensus size: 2 35240377 TATAAGTATG 35240387 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 35240429 AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT A 35240450 GGTATTTTTA Statistics Matches: 61, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 61 1.00 ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49 Consensus pattern (2 bp): AT Found at i:35248201 original size:35 final size:34 Alignment explanation
Indices: 35248162--35248286 Score: 119 Period size: 35 Copynumber: 3.6 Consensus size: 34 35248152 ATATCGTCAA * 35248162 TTTATTCGACTAGCGCTGGGCGCTACTTTCGTCGG 1 TTTATTCGACTAGCGCTGGGCGC-ACATTCGTCGG * * * 35248197 TTTA-TCTGACTAGTGCTGGGCACACATTCGTTGG 1 TTTATTC-GACTAGCGCTGGGCGCACATTCGTCGG * * 35248231 TTTATTCGACTAGCGCTAGGCGCGAACA-TCGTTGG 1 TTTATTCGACTAGCGCT-GG-GCGCACATTCGTCGG * * * 35248266 TTTATCCAACTAGAGCTGGGC 1 TTTATTCGACTAGCGCTGGGC 35248287 TTACTATTGA Statistics Matches: 76, Mismatches: 10, Indels: 10 0.79 0.10 0.10 Matches are distributed among these distances: 33 2 0.03 34 26 0.34 35 43 0.57 36 5 0.07 ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32 Consensus pattern (34 bp): TTTATTCGACTAGCGCTGGGCGCACATTCGTCGG Found at i:35249310 original size:12 final size:12 Alignment explanation
Indices: 35249293--35249322 Score: 51 Period size: 12 Copynumber: 2.5 Consensus size: 12 35249283 TCAGGCAGTT 35249293 ACACGGCCTAGC 1 ACACGGCCTAGC * 35249305 ACACGGCCTGGC 1 ACACGGCCTAGC 35249317 ACACGG 1 ACACGG 35249323 GCGTGTGAGG Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 12 17 1.00 ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07 Consensus pattern (12 bp): ACACGGCCTAGC Found at i:35256433 original size:17 final size:18 Alignment explanation
Indices: 35256392--35256426 Score: 54 Period size: 18 Copynumber: 2.0 Consensus size: 18 35256382 CTCAAACATA 35256392 TACATC-AACCAATTCAT 1 TACATCAAACCAATTCAT * 35256409 TACATCAAACCGATTCAT 1 TACATCAAACCAATTCAT 35256427 ATATCAAGCA Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 17 6 0.38 18 10 0.62 ACGTcount: A:0.40, C:0.29, G:0.03, T:0.29 Consensus pattern (18 bp): TACATCAAACCAATTCAT Found at i:35260063 original size:25 final size:24 Alignment explanation
Indices: 35260035--35260082 Score: 69 Period size: 25 Copynumber: 2.0 Consensus size: 24 35260025 ATCCAGGCAA 35260035 TATAACGGGAAGCTCACAAAGAGCT 1 TATAACGGGAAGCTC-CAAAGAGCT * * 35260060 TATAACGGGTAGCTCCGAAGAGC 1 TATAACGGGAAGCTCCAAAGAGC 35260083 AATTAATTAG Statistics Matches: 21, Mismatches: 2, Indels: 1 0.88 0.08 0.04 Matches are distributed among these distances: 24 7 0.33 25 14 0.67 ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17 Consensus pattern (24 bp): TATAACGGGAAGCTCCAAAGAGCT Found at i:35268312 original size:22 final size:23 Alignment explanation
Indices: 35268263--35268313 Score: 61 Period size: 22 Copynumber: 2.3 Consensus size: 23 35268253 AAAAAATCTA * * 35268263 CTATTTTTTTGTTGTTTTAATGC 1 CTATTTTCTTGTTGTTTTAATCC * 35268286 C-ATTTTCTTGTTGTTTT-CTCC 1 CTATTTTCTTGTTGTTTTAATCC 35268307 CTATTTT 1 CTATTTT 35268314 GTTATTATGT Statistics Matches: 24, Mismatches: 3, Indels: 3 0.80 0.10 0.10 Matches are distributed among these distances: 21 3 0.12 22 20 0.83 23 1 0.04 ACGTcount: A:0.10, C:0.16, G:0.10, T:0.65 Consensus pattern (23 bp): CTATTTTCTTGTTGTTTTAATCC Found at i:35268355 original size:22 final size:22 Alignment explanation
Indices: 35268308--35268355 Score: 53 Period size: 22 Copynumber: 2.2 Consensus size: 22 35268298 GTTTTCTCCC * * * 35268308 TATTTTGTTATTATGTTGCTAC 1 TATTTTGTCATTATGTTGCAAA 35268330 TATTTTGTCATTATTGTT-CAAA 1 TATTTTGTCATTA-TGTTGCAAA 35268352 TATT 1 TATT 35268356 GTATAACGTT Statistics Matches: 22, Mismatches: 3, Indels: 2 0.81 0.11 0.07 Matches are distributed among these distances: 22 18 0.82 23 4 0.18 ACGTcount: A:0.23, C:0.08, G:0.10, T:0.58 Consensus pattern (22 bp): TATTTTGTCATTATGTTGCAAA Found at i:35269046 original size:21 final size:21 Alignment explanation
Indices: 35269021--35269061 Score: 66 Period size: 21 Copynumber: 2.0 Consensus size: 21 35269011 CCAAAACCTC 35269021 AAATCAATTAACACA-AATTTT 1 AAATCAATTAA-ACATAATTTT 35269042 AAATCAATTAAACATAATTT 1 AAATCAATTAAACATAATTT 35269062 GATCATAAAA Statistics Matches: 19, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 20 3 0.16 21 16 0.84 ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34 Consensus pattern (21 bp): AAATCAATTAAACATAATTTT Found at i:35276629 original size:29 final size:27 Alignment explanation
Indices: 35276565--35276631 Score: 71 Period size: 31 Copynumber: 2.3 Consensus size: 27 35276555 GAGTTTCACG * 35276565 TGTATAATTACATCAAATTAAAGTTTA 1 TGTATAATTACATCAAATTAAAGTTCA * * 35276592 TGTACATAATTGCACATTACATTAAAGTTCA 1 TGT--ATAATT--ACATCAAATTAAAGTTCA 35276623 TGTATAATT 1 TGTATAATT 35276632 TTGAGATTCA Statistics Matches: 33, Mismatches: 3, Indels: 6 0.79 0.07 0.14 Matches are distributed among these distances: 27 3 0.09 29 12 0.36 31 18 0.55 ACGTcount: A:0.40, C:0.10, G:0.09, T:0.40 Consensus pattern (27 bp): TGTATAATTACATCAAATTAAAGTTCA Found at i:35279409 original size:20 final size:20 Alignment explanation
Indices: 35279384--35279423 Score: 62 Period size: 20 Copynumber: 2.0 Consensus size: 20 35279374 CGTAAAATGA * 35279384 TTTCTGGAAAATGTTTTACT 1 TTTCTGGAAAATGATTTACT * 35279404 TTTCTGTAAAATGATTTACT 1 TTTCTGGAAAATGATTTACT 35279424 GGAAAATATT Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 20 18 1.00 ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50 Consensus pattern (20 bp): TTTCTGGAAAATGATTTACT Found at i:35279413 original size:34 final size:35 Alignment explanation
Indices: 35279369--35279435 Score: 109 Period size: 34 Copynumber: 1.9 Consensus size: 35 35279359 CAGTAAAATA * 35279369 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC 1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC * 35279403 TTTTCTGTAAAATGATTTACTGGAAAATATTTT 1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT 35279436 CTGGTGTTTG Statistics Matches: 30, Mismatches: 2, Indels: 1 0.91 0.06 0.03 Matches are distributed among these distances: 34 17 0.57 35 13 0.43 ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46 Consensus pattern (35 bp): TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC Found at i:35279439 original size:14 final size:15 Alignment explanation
Indices: 35279363--35279439 Score: 52 Period size: 14 Copynumber: 5.0 Consensus size: 15 35279353 GATTGCCAGT * * 35279363 AAAAT-ATTTTCCGT 1 AAAATGATTTTCTGG 35279377 AAAATGA-TTTCTGG 1 AAAATGATTTTCTGG * 35279391 AAAATGTTTTACTTTTCTGT 1 AAAATG----A-TTTTCTGG * 35279411 AAAATGATTTACTGG 1 AAAATGATTTTCTGG 35279426 AAAAT-ATTTTCTGG 1 AAAATGATTTTCTGG 35279440 TGTTTGATTG Statistics Matches: 50, Mismatches: 6, Indels: 14 0.71 0.09 0.20 Matches are distributed among these distances: 14 24 0.48 15 12 0.24 16 1 0.02 18 1 0.02 20 12 0.24 ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43 Consensus pattern (15 bp): AAAATGATTTTCTGG Found at i:35281200 original size:3 final size:3 Alignment explanation
Indices: 35281192--35281232 Score: 64 Period size: 3 Copynumber: 13.3 Consensus size: 3 35281182 ATATAAAAGC * 35281192 AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAAT AAT AAT A 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT A 35281233 CGCTAAAATA Statistics Matches: 35, Mismatches: 2, Indels: 2 0.90 0.05 0.05 Matches are distributed among these distances: 3 32 0.91 4 3 0.09 ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29 Consensus pattern (3 bp): AAT Found at i:35281341 original size:28 final size:28 Alignment explanation
Indices: 35281267--35281349 Score: 87 Period size: 28 Copynumber: 2.9 Consensus size: 28 35281257 AAAAGTGTTA * 35281267 AAAAGGGACTAAATC-AAAGTAAAAGCAAC 1 AAAAGGGACTAAATCGAAA-TAAAA-AAAC * * * 35281296 AATACGGGGCGAAATCGAAATAAAAAAAC 1 AA-AAGGGACTAAATCGAAATAAAAAAAC * 35281325 AAAAGGGACTAAATCGAAAGAAAAA 1 AAAAGGGACTAAATCGAAATAAAAA 35281350 TAAAATTTAA Statistics Matches: 44, Mismatches: 8, Indels: 5 0.77 0.14 0.09 Matches are distributed among these distances: 28 19 0.43 29 7 0.16 30 15 0.34 31 3 0.07 ACGTcount: A:0.59, C:0.12, G:0.19, T:0.10 Consensus pattern (28 bp): AAAAGGGACTAAATCGAAATAAAAAAAC Found at i:35283164 original size:129 final size:129 Alignment explanation
Indices: 35282934--35283503 Score: 820 Period size: 129 Copynumber: 4.4 Consensus size: 129 35282924 CGCGACGTCG * * * * * * * * * * ** 35282934 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGTGAGGTAAAACCTGATGCGA 1 GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAAGA * * * * * 35282999 TCTACTCAACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCATTGTAATCTCA 66 TCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCA * 35283063 GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACTTGATAAGA 1 GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAAGA * * 35283128 TATTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCA 66 TCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCA * 35283192 GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGTGAGATAAGACCTGATACA- 1 GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATA-AG * ** * 35283256 ATCTTCTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTATAATCTCA 65 ATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCA * * * 35283321 GGGAGATAGGATTACTAACTTC-ATCTGCCCCGCTGTAATCTCAGGGAGATAAGACCTGATACGA 1 GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAAGA * 35283385 TCTTCTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCACTCCACTGTAATCTCA 66 TCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCA * ** * 35283449 GGGAGATAGGATTACTAACTTCAATCTATTCTGCTGTAATCTCAGGGAGATAAGA 1 GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA 35283504 TTTGAAATTC Statistics Matches: 401, Mismatches: 37, Indels: 6 0.90 0.08 0.01 Matches are distributed among these distances: 128 121 0.30 129 279 0.70 130 1 0.00 ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31 Consensus pattern (129 bp): GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAAGA TCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCA Found at i:35283456 original size:257 final size:258 Alignment explanation
Indices: 35282934--35283503 Score: 872 Period size: 257 Copynumber: 2.2 Consensus size: 258 35282924 CGCGACGTCG * * * * * * * * * * 35282934 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGTGAGGTAAAACCTGATGCGA 1 GGGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGTGAGATAAGACCTGATACAA * * * 35282999 TCTACTCAACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCATTGTAATCTCAG 66 TCTACTCAACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTATAATCTCAG * * * 35283064 GGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACTTGATAAGAT 131 GGAGATAGGATTACTAACTTCAATCTGCCCCGCTGTAATCTCAGGGAGATAAGACCTGATAAGAT * 35283129 ATTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCA 196 ATTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCA * 35283192 GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGTGAGATAAGACCTGATACAA 1 GGGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGTGAGATAAGACCTGATACAA * * * * 35283257 TCTTCTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTATAATCTCAG 66 TCTACTCAACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTATAATCTCAG * 35283322 GGAGATAGGATTACTAACTTC-ATCTGCCCCGCTGTAATCTCAGGGAGATAAGACCTGATACGAT 131 GGAGATAGGATTACTAACTTCAATCTGCCCCGCTGTAATCTCAGGGAGATAAGACCTGATAAGAT * * 35283386 CTTCTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCACTCCACTGTAATCTCA 196 ATTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCA * * * * 35283449 GGGAGATAGGATTACTAACTTCAATCTATTCTGCTGTAATCTCAGGGAGATAAGA 1 GGGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGTGAGATAAGA 35283504 TTTGAAATTC Statistics Matches: 282, Mismatches: 30, Indels: 1 0.90 0.10 0.00 Matches are distributed among these distances: 257 150 0.53 258 132 0.47 ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31 Consensus pattern (258 bp): GGGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGTGAGATAAGACCTGATACAA TCTACTCAACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTATAATCTCAG GGAGATAGGATTACTAACTTCAATCTGCCCCGCTGTAATCTCAGGGAGATAAGACCTGATAAGAT ATTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCA Found at i:35283574 original size:87 final size:86 Alignment explanation
Indices: 35283353--35283766 Score: 288 Period size: 87 Copynumber: 4.7 Consensus size: 86 35283343 ATCTGCCCCG * *** * * * 35283353 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTTCTCTACTGTAACTTCAGAGAGATAATATC 1 CTGTAATCTCAAGGAGATAAGACCTGACGTGATCTACTCTGCTGTAACTTCAGAGAGATAAGAT- * * * 35283418 CTT--TATTTT-AATCCACTCCA 65 -TTGAAATTTTCAGTCTACTCCA * * * * * * * * 35283438 CTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTATTCTGCTGTAA-TCTCAGGGAGATAA 1 CTGTAATCTCAAGGAGATAAGA--CCTGACGT-GATCTACTCTGCTGTAACT-TCAGAGAGATAA ** 35283502 GATTTGAAATTCTTCAGTCTGTTCCA 62 GATTTGAAATT-TTCAGTCTACTCCA * * 35283528 CTGTAATCTCAAAGAAATAAGACCTGACGTGATCTACTCTGCTGTAACTTCAGAGAGATAAGATC 1 CTGTAATCTCAAGGAGATAAGACCTGACGTGATCTACTCTGCTGTAACTTCAGAGAGATAAGAT- * ** * 35283593 CTT--CATTTT-AACCCACTCCA 65 -TTGAAATTTTCAGTCTACTCCA * * * * * * * * 35283613 CTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAA-TCTCA-AGGAGATA 1 CTGTAATCTCAAGGAGATAAGA--CCTGACGT-GATCTACTCTGCTGTAACT-TCAGA-GAGATA * * 35283676 AAATCTGAAACTTTTCAGTCTACTCCA 61 AGATTTGAAA-TTTTCAGTCTACTCCA * * 35283703 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGAT 1 CTGTAATCTCAAGGAGATAAGACCTGACGTGATCTACTCTGCTGTAACTTCAGAGAGATAAGAT 35283767 CCTTTATTTT Statistics Matches: 247, Mismatches: 60, Indels: 42 0.71 0.17 0.12 Matches are distributed among these distances: 85 45 0.18 86 5 0.02 87 69 0.28 88 67 0.27 89 8 0.03 90 53 0.21 ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31 Consensus pattern (86 bp): CTGTAATCTCAAGGAGATAAGACCTGACGTGATCTACTCTGCTGTAACTTCAGAGAGATAAGATT TGAAATTTTCAGTCTACTCCA Found at i:35283575 original size:175 final size:175 Alignment explanation
Indices: 35283353--35283899 Score: 691 Period size: 175 Copynumber: 3.2 Consensus size: 175 35283343 ATCTGCCCCG * * * * * 35283353 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTTCTCTACTGTAACTTCAGAGAGATAATATC 1 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATC * * 35283418 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTATTCTGC 66 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCGC * * * ** 35283483 TGTAATCTCAGGGAGATAAGATTTGAAA-TTCTTCAGTCTGTTCCA 131 TGTAATCTCAAGGAGATAAAATCTGAAACTT-TTCAGTCTACTCCA * * * * 35283528 CTGTAATCTCAAAGAAATAAGACCTGACGTGATCTACTCTGCTGTAACTTCAGAGAGATAAGATC 1 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATC * * * 35283593 CTTCATTTTAACCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGC 66 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCGC 35283658 TGTAATCTCAAGGAGATAAAATCTGAAACTTTTCAGTCTACTCCA 131 TGTAATCTCAAGGAGATAAAATCTGAAACTTTTCAGTCTACTCCA 35283703 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATC 1 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATC * * ** * * * 35283768 CTTTATTTTAAT-CAGCTCCACTGTAA-CTTCAAGGAGATAGGA-TAGTGTCTTCGATCTGCACC 66 CTTTATTTTAATCCA-CTCCACTGTAATC-TCAGGGAGATAGGATTACTAACTTCAATCTACTCC * * * * 35283830 GCTGTAATCTC-AGAGAGATAAGATCATG--GC--TTCAATCTGCTCCA 129 GCTGTAATCTCAAG-GAGATAAAATC-TGAAACTTTTCAGTCTACTCCA * * 35283874 CTGTAACCTC-AGGAGATAAGATCTGA 1 CTGTAATCTCAAGGAGATAAGACCTGA 35283900 AATTCTTCGG Statistics Matches: 330, Mismatches: 37, Indels: 15 0.86 0.10 0.04 Matches are distributed among these distances: 170 15 0.05 171 21 0.06 173 3 0.01 174 39 0.12 175 250 0.76 176 2 0.01 ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30 Consensus pattern (175 bp): CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATC CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCGC TGTAATCTCAAGGAGATAAAATCTGAAACTTTTCAGTCTACTCCA Found at i:35283661 original size:44 final size:44 Alignment explanation
Indices: 35283041--35284069 Score: 342 Period size: 44 Copynumber: 23.8 Consensus size: 44 35283031 CCTTTGTTTT * * * * * 35283041 AATCCGCTCCATTGTAATCTCAGGGAGATAGGATTACTAGCTTC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC * ** ** 35283085 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGACTTGATAAGAT- 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TTCCTAACTTC * * * * * 35283129 -AT-T-CTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTT 1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTCC-TAACTTC *** * * * 35283170 AATCCATTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC * * * * 35283214 AATCTGCTCCGCTGTAATCTCAGTGAGATAAGA--CCTGA-TAC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC * * * * * * * 35283255 AATCTTCTCTACTGTAA-CTTCAGAGAGATAATA-TCCTTTATTTT 1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTCC-TAACTTC * * * * * 35283299 AATCCGTTCCACTATAATCTCAGGGAGATAGGATTACTAACTTC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC * * * * 35283343 -ATCTGCCCCGCTGTAATCTCAGGGAGATAAGA--CCTGA-TAC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC * * * * * * * * 35283383 GATCTTCTCTACTGTAA-CTTCAGAGAGATAATA-TCCTTTATTTT 1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTCC-TAACTTC ** * * 35283427 AATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC ** ** *** 35283471 AATCTATTCTGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAA--CTTC * * ** * * * 35283517 AGTCTGTTCCACTGTAATCTCAAAGAAATAAGA--CCTGACGT- 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC * * ** * * * * 35283558 GATCTACTCTGCTGTAA-CTTCAGAGAGATAAGA-TCCTTCATTTT 1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTCC-TAACTTC * ** * * 35283602 AACCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC * * * 35283646 AATCTGCTCCGCTGTAATCTCAAGGAGATAA-AAT-CTGAAACTTTTC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCT--AAC--TTC * * * * * 35283692 AGTCTACTCCACTGTAATCTCAAGGAGATAAGA--CCTGA-TGC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC * * ** * * * * 35283733 GATCTACTCTGCTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTT 1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTCC-TAACTTC * * * ** ** 35283777 AATCAGCTCCACTGTAA-CTTCAAGGAGATAGGA-TAGTGTCTTC 1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTCCTAACTTC * * * * * ** 35283820 GATCTGCACCGCTGTAATCTCAGAGAGATAAGA-TCATGGCTTC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC * 35283863 AATCTGCTCCACTGTAACCTCA-GGAGATAAGA-T-CTGAAATTCTTC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCT--AA--CTTC ** * * * * 35283908 GGTCTACTCCACTGTAACCTCAGGGAGATAAGA--CCTGA-TAC 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC * * ** * * * * 35283949 GATCTACTCTGCTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTT 1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTCC-TAACTTC * * ** ** 35283993 AATCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTC 1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTCCTAACTTC * * 35284036 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT 1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT 35284070 CTCTGGCTTC Statistics Matches: 722, Mismatches: 210, Indels: 106 0.70 0.20 0.10 Matches are distributed among these distances: 39 1 0.00 40 11 0.02 41 157 0.22 42 29 0.04 43 123 0.17 44 285 0.39 45 40 0.06 46 75 0.10 47 1 0.00 ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31 Consensus pattern (44 bp): AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCTAACTTC Found at i:35283835 original size:87 final size:85 Alignment explanation
Indices: 35283137--35283854 Score: 333 Period size: 85 Copynumber: 8.3 Consensus size: 85 35283127 ATATTCTCTA * * * 35283137 CTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCAGGGAGATAG 1 CTGTAATC-TCAGAGAGATAAGATCCTTAATTTTAAT-CACTCCACTGTAATCTCAAGGAGATAG * 35283201 GATTACTAGCTTCAATCTGCTCCG 64 GA-TACT-GCTTCGATCTGCTCCG * * ** * * 35283225 CTGTAATCTCAGTGAGATAAGA-CC-TGA-TACAATCTTCTCTACTGTAA-CTTC-AGAGAGATA 1 CTGTAATCTCAGAGAGATAAGATCCTTAATTTTAATC-ACTCCACTGTAATC-TCAAG-GAGATA ** * ** ** * * * 35283285 ATATCCTTTATTTTAATCCGTTCCA 63 GGATAC--TGCTTCGATCTGCTCCG * * * * * * * * * * * 35283310 CTATAATCTCAGGGAGATAGGATTAC-TAA-CTTCATCTGCCCCGCTGTAATCTCAGGGAGATAA 1 CTGTAATCTCAGAGAGATAAGA-TCCTTAATTTTAATC-ACTCCACTGTAATCTCAAGGAGATAG * * * * ** 35283373 GA-CCTGATACGATCTTCTCTA 64 GATACTGCTTCGATCTGCTCCG * * * 35283394 CTGTAA-CTTCAGAGAGATAATATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAG 1 CTGTAATC-TCAGAGAGATAAGATCCTTAATTTTAAT-CACTCCACTGTAATCTCAAGGAGATAG * * ** * 35283458 GATTACTAACTTCAATCTATTCTG 64 GA-TACT-GCTTCGATCTGCTCCG * * ** * * 35283482 CTGTAATCTCAGGGAGATAAGAT--TTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAAAGAAA 1 CTGTAATCTCAGAGAGATAAGATCCTT--AATT-TT-AATC-ACTCCACTGTAATCTCAAGGAGA * * * * * 35283545 TAAGA-CCTGACGT-GATCTACTCTG 61 TAGGATACTG-CTTCGATCTGCTCCG * * * 35283569 CTGTAA-CTTCAGAGAGATAAGATCCTTCATTTTAACCCACTCCACTGTAATCTCAGGGAGATAG 1 CTGTAATC-TCAGAGAGATAAGATCCTTAATTTTAA-TCACTCCACTGTAATCTCAAGGAGATAG * * 35283633 GATTACTAACTTCAATCTGCTCCG 64 GA-TACT-GCTTCGATCTGCTCCG * * * 35283657 CTGTAATCTCA-AGGAGATAAAAT-CTGAAACTTTTCAGTCTACTCCACTGTAATCTCAAGGAGA 1 CTGTAATCTCAGA-GAGATAAGATCCT-TAA-TTTT-AATC-ACTCCACTGTAATCTCAAGGAGA * * * * * * 35283720 TAAGA-CCTGATGCGATCTACTCTG 61 TAGGATACTGCTTCGATCTGCTCCG * 35283744 CTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCAGCTCCACTGTAA-CTTCAAGGAGATA 1 CTGTAATC-TCAGAGAGATAAGATCCTTAATTTTAATCA-CTCCACTGTAATC-TCAAGGAGATA * * 35283807 GGATAGTGTCTTCGATCTGCACCG 63 GGATACTG-CTTCGATCTGCTCCG 35283831 CTGTAATCTCAGAGAGATAAGATC 1 CTGTAATCTCAGAGAGATAAGATC 35283855 ATGGCTTCAA Statistics Matches: 466, Mismatches: 118, Indels: 93 0.69 0.17 0.14 Matches are distributed among these distances: 83 3 0.01 84 33 0.07 85 129 0.28 86 19 0.04 87 129 0.28 88 89 0.19 89 13 0.03 90 51 0.11 ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31 Consensus pattern (85 bp): CTGTAATCTCAGAGAGATAAGATCCTTAATTTTAATCACTCCACTGTAATCTCAAGGAGATAGGA TACTGCTTCGATCTGCTCCG Found at i:35283849 original size:43 final size:42 Alignment explanation
Indices: 35283785--35283896 Score: 127 Period size: 43 Copynumber: 2.6 Consensus size: 42 35283775 TTAATCAGCT * * * * 35283785 CCACTGTAACTTCAAGGAGATAGGAT-AGTGTCTTCGATCTGCA 1 CCACTGTAACCTC-AGGAGATAAGATCA-TGGCTTCAATCTGCA * * * 35283828 CCGCTGTAATCTCAGAGAGATAAGATCATGGCTTCAATCTGCT 1 CCACTGTAACCTCAG-GAGATAAGATCATGGCTTCAATCTGCA 35283871 CCACTGTAACCTCAGGAGATAAGATC 1 CCACTGTAACCTCAGGAGATAAGATC 35283897 TGAAATTCTT Statistics Matches: 58, Mismatches: 9, Indels: 5 0.81 0.12 0.07 Matches are distributed among these distances: 42 13 0.22 43 44 0.76 44 1 0.02 ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26 Consensus pattern (42 bp): CCACTGTAACCTCAGGAGATAAGATCATGGCTTCAATCTGCA Found at i:35283915 original size:216 final size:217 Alignment explanation
Indices: 35283613--35284085 Score: 761 Period size: 216 Copynumber: 2.2 Consensus size: 217 35283603 ACCCACTCCA * * ** * * 35283613 CTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAA 1 CTGTAATCTCAGGGAGATAAGATCA-TGGCTTCAATCTGCTCCACTGTAACCTCAAGGAGATAAA * * 35283678 ATCTGAAACTTTTCAGTCTACTCCACTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCT 65 ATCTGAAACTTTTCAGTCTACTCCACTGTAACCTCAAGGAGATAAGACCTGATACGATCTACTCT 35283743 GCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCAGCTCCACTGTAACTTCAAGGAGATAG 130 GCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCAGCTCCACTGTAACTTCAAGGAGATAG 35283808 GATAGTGTCTTCGATCTGCACCG 195 GATAGTGTCTTCGATCTGCACCG * * 35283831 CTGTAATCTCAGAGAGATAAGATCATGGCTTCAATCTGCTCCACTGTAACCTC-AGGAGATAAGA 1 CTGTAATCTCAGGGAGATAAGATCATGGCTTCAATCTGCTCCACTGTAACCTCAAGGAGATAAAA * * 35283895 TCTGAAA-TTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATACGATCTACTCT 66 TCTGAAACTT-TTCAGTCTACTCCACTGTAACCTCAAGGAGATAAGACCTGATACGATCTACTCT * * 35283959 GCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG 130 GCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCAGCTCCACTGTAACTTCAAGGAGATAG * 35284024 GATAGTGTCTTCGATCTGCTCCG 195 GATAGTGTCTTCGATCTGCACCG * 35284047 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTG 1 CTGTAATCTCAGGGAGATAAGATC-ATGGCTTCAATCTG 35284086 ATGTGATCTA Statistics Matches: 236, Mismatches: 17, Indels: 5 0.91 0.07 0.02 Matches are distributed among these distances: 215 2 0.01 216 175 0.74 217 37 0.16 218 22 0.09 ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30 Consensus pattern (217 bp): CTGTAATCTCAGGGAGATAAGATCATGGCTTCAATCTGCTCCACTGTAACCTCAAGGAGATAAAA TCTGAAACTTTTCAGTCTACTCCACTGTAACCTCAAGGAGATAAGACCTGATACGATCTACTCTG CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCAGCTCCACTGTAACTTCAAGGAGATAGG ATAGTGTCTTCGATCTGCACCG Found at i:35283916 original size:175 final size:172 Alignment explanation
Indices: 35283313--35283940 Score: 682 Period size: 175 Copynumber: 3.6 Consensus size: 172 35283303 CGTTCCACTA * * * * * 35283313 TAATCTCAGGGAGATAGGATTACT-AACTTCA-TCTGCCCCGCTGTAATCTCAGGGAGATAAGAC 1 TAATCTCAGAGAGATAAGA-T-CTGAACTTCAGTCTGCTCCACTGTAATCTCAAGGAGATAAGAC * * * 35283376 CTGA-TACGATCTTCTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCACTCCACT 64 CTGACTTCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAAT-CACTCCACT ** * 35283440 GTAATCTCAGGGAGATAGGATTACTAACTTCAATCTATTCTGCTG 128 GTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTG * * * * * 35283485 TAATCTCAGGGAGATAAGATTTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAAAGAAATAAGA 1 TAATCTCAGAGAGATAAGATCTG-AA--CTTCAGTCTGCTCCACTGTAATCTCAAGGAGATAAGA * * * * 35283550 CCTGACGT-GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTTTAACCCACTCCAC 63 CCTGACTTCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA-TCACTCCAC 35283614 TGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTG 127 TGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTG * * 35283660 TAATCTCA-AGGAGATAAAATCTGAAACTTTTCAGTCTACTCCACTGTAATCTCAAGGAGATAAG 1 TAATCTCAGA-GAGATAAGATCTG-AAC--TTCAGTCTGCTCCACTGTAATCTCAAGGAGATAAG * * 35283724 ACCTGA-TGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCAGCTCCA 62 ACCTGACTTCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCA-CTCCA * * ** * * 35283788 CTGTAA-CTTCAAGGAGATAGGA-TAGTGTCTTCGATCTGCACCGCTG 126 CTGTAATC-TCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTG * * * * 35283834 TAATCTCAGAGAGATAAGATCATG-GCTTCAATCTGCTCCACTGTAACCTC-AGGAGATAAGATC 1 TAATCTCAGAGAGATAAGATC-TGAACTTCAGTCTGCTCCACTGTAATCTCAAGGAGATAAGACC * * * * 35283897 TGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA 65 TG--A--CTTCGATCTACTCTACTGTAACTTCAGAGAGATAAGA 35283941 CCTGATACGA Statistics Matches: 389, Mismatches: 47, Indels: 37 0.82 0.10 0.08 Matches are distributed among these distances: 170 15 0.04 171 22 0.06 172 21 0.05 173 2 0.01 174 45 0.12 175 284 0.73 ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30 Consensus pattern (172 bp): TAATCTCAGAGAGATAAGATCTGAACTTCAGTCTGCTCCACTGTAATCTCAAGGAGATAAGACCT GACTTCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCACTCCACTGTA ATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTG Found at i:35284202 original size:44 final size:44 Alignment explanation
Indices: 35284113--35284227 Score: 104 Period size: 44 Copynumber: 2.6 Consensus size: 44 35284103 ATCTACTCTG * * * * ** * 35284113 CTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCA 1 CTGTAACCTCAGGGAGATAAGATTTGTACCTTCAATCTGCCCCA * * 35284157 CTGTAACCTCAGGGAGATAAGATTTGTACCTTTAATTTGCCCCA 1 CTGTAACCTCAGGGAGATAAGATTTGTACCTTCAATCTGCCCCA * * * * 35284201 CTGCATCTTCAGGGGGATAAGACTTTG 1 CTGTAACCTCAGGGAGATAAGA-TTTG 35284228 GTTCTTTGAT Statistics Matches: 57, Mismatches: 13, Indels: 1 0.80 0.18 0.01 Matches are distributed among these distances: 44 53 0.93 45 4 0.07 ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30 Consensus pattern (44 bp): CTGTAACCTCAGGGAGATAAGATTTGTACCTTCAATCTGCCCCA Found at i:35284517 original size:121 final size:121 Alignment explanation
Indices: 35284293--35284517 Score: 346 Period size: 121 Copynumber: 1.9 Consensus size: 121 35284283 TTCTGGAAAG * * 35284293 TAAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATT 1 TAAGATTCACCATTGTGGCTTTAATCTTTTTAACCGCAATGTCGGAGAAACAAGATTCACCAATT * * ** 35284358 TGGCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTT 66 TGGCTTTAATCTACTCCACTGCATAGCTTGGGAAGTAAGATTCGCTGTTGTAGCTT 35284414 TAAGATTCACCGA-TGTGGCTTTAATCTTTTTAACCGCAATGTCGGAGAAACAAGATTCACCAAT 1 TAAGATTCACC-ATTGTGGCTTTAATCTTTTTAACCGCAATGTCGGAGAAACAAGATTCACCAAT * * 35284478 TTGGCTTTAATCTGCTCCACTGCACTATC-TGGGAAGTAAG 65 TTGGCTTTAATCTACTCCACTGCA-TAGCTTGGGAAGTAAG 35284518 GCTTTGTTTT Statistics Matches: 94, Mismatches: 8, Indels: 4 0.89 0.08 0.04 Matches are distributed among these distances: 121 91 0.97 122 3 0.03 ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33 Consensus pattern (121 bp): TAAGATTCACCATTGTGGCTTTAATCTTTTTAACCGCAATGTCGGAGAAACAAGATTCACCAATT TGGCTTTAATCTACTCCACTGCATAGCTTGGGAAGTAAGATTCGCTGTTGTAGCTT Found at i:35285805 original size:13 final size:13 Alignment explanation
Indices: 35285787--35285811 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 35285777 TCTCCATTTT 35285787 TCATTTTTCATTC 1 TCATTTTTCATTC 35285800 TCATTTTTCATT 1 TCATTTTTCATT 35285812 TTTTATTTTT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64 Consensus pattern (13 bp): TCATTTTTCATTC Found at i:35285839 original size:8 final size:7 Alignment explanation
Indices: 35285781--35285821 Score: 57 Period size: 7 Copynumber: 6.0 Consensus size: 7 35285771 TTAGCCTCTC 35285781 CATTTTT 1 CATTTTT 35285788 CATTTTT 1 CATTTTT * 35285795 CA-TTCT 1 CATTTTT 35285801 CATTTTT 1 CATTTTT 35285808 CATTTTT 1 CATTTTT * 35285815 TATTTTT 1 CATTTTT 35285822 TTATTTTTTT Statistics Matches: 30, Mismatches: 3, Indels: 2 0.86 0.09 0.06 Matches are distributed among these distances: 6 5 0.17 7 25 0.83 ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71 Consensus pattern (7 bp): CATTTTT Found at i:35286736 original size:26 final size:26 Alignment explanation
Indices: 35286707--35286770 Score: 71 Period size: 26 Copynumber: 2.5 Consensus size: 26 35286697 TTTTCTTCTT 35286707 TTTCTTTCATTTTTGATTTTGA-TTGA 1 TTTCTTTC-TTTTTGATTTTGACTTGA * * 35286733 TTTCTCT-TTTTTGCTTTTGACTTTGA 1 TTTCTTTCTTTTTGATTTTGAC-TTGA 35286759 TTT-TTTCTTTTT 1 TTTCTTTCTTTTT 35286771 CTTTTTTCTT Statistics Matches: 32, Mismatches: 3, Indels: 6 0.78 0.07 0.15 Matches are distributed among these distances: 24 12 0.38 25 2 0.06 26 18 0.56 ACGTcount: A:0.09, C:0.11, G:0.09, T:0.70 Consensus pattern (26 bp): TTTCTTTCTTTTTGATTTTGACTTGA Found at i:35286789 original size:13 final size:13 Alignment explanation
Indices: 35286759--35286783 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 35286749 TTGACTTTGA 35286759 TTTTTTCTTTTTC 1 TTTTTTCTTTTTC 35286772 TTTTTTCTTTTT 1 TTTTTTCTTTTT 35286784 TATTTTGATT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88 Consensus pattern (13 bp): TTTTTTCTTTTTC Found at i:35286806 original size:9 final size:9 Alignment explanation
Indices: 35286792--35286829 Score: 62 Period size: 9 Copynumber: 4.4 Consensus size: 9 35286782 TTTATTTTGA 35286792 TTTTGATTT 1 TTTTGATTT 35286801 TTTTGATTT 1 TTTTGATTT 35286810 TTTTGA-TT 1 TTTTGATTT 35286818 TTTTG-TTT 1 TTTTGATTT 35286826 TTTT 1 TTTT 35286830 ATTGAATCTG Statistics Matches: 28, Mismatches: 0, Indels: 3 0.90 0.00 0.10 Matches are distributed among these distances: 8 13 0.46 9 15 0.54 ACGTcount: A:0.08, C:0.00, G:0.11, T:0.82 Consensus pattern (9 bp): TTTTGATTT Found at i:35286812 original size:69 final size:70 Alignment explanation
Indices: 35286690--35286819 Score: 167 Period size: 69 Copynumber: 1.9 Consensus size: 70 35286680 CTCCTTTTTC * * 35286690 TTTTTCTTTTTCTTCTTTTTCTTTCATTTTTGATTTTGATTGATTTCTCTTTTTTGCTTTTGACT 1 TTTTTCTTTTTCTTCTTTTTCTTTCATTTTTGATTTTGATTGATTTATCTTTTTTGATTTTGACT 35286755 TTGAT 66 TTGAT ** ** 35286760 TTTTTCTTTTTC-T-TTTTTCTTTTTTATTTTGATTTTGATTTTTTTGAT-TTTTTTGATTTT 1 TTTTTCTTTTTCTTCTTTTTCTTTCAT-TTTTGATTTTGATTGATTT-ATCTTTTTTGATTTT 35286820 TTGTTTTTTT Statistics Matches: 52, Mismatches: 6, Indels: 5 0.83 0.10 0.08 Matches are distributed among these distances: 68 10 0.19 69 29 0.56 70 13 0.25 ACGTcount: A:0.08, C:0.09, G:0.08, T:0.75 Consensus pattern (70 bp): TTTTTCTTTTTCTTCTTTTTCTTTCATTTTTGATTTTGATTGATTTATCTTTTTTGATTTTGACT TTGAT Found at i:35286813 original size:18 final size:16 Alignment explanation
Indices: 35286792--35286829 Score: 58 Period size: 16 Copynumber: 2.2 Consensus size: 16 35286782 TTTATTTTGA 35286792 TTTTGATTTTTTTGATTT 1 TTTTGA-TTTTTTG-TTT 35286810 TTTTGATTTTTTGTTT 1 TTTTGATTTTTTGTTT 35286826 TTTT 1 TTTT 35286830 ATTGAATCTG Statistics Matches: 20, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 16 7 0.35 17 7 0.35 18 6 0.30 ACGTcount: A:0.08, C:0.00, G:0.11, T:0.82 Consensus pattern (16 bp): TTTTGATTTTTTGTTT Found at i:35298745 original size:3 final size:3 Alignment explanation
Indices: 35298737--35298801 Score: 76 Period size: 3 Copynumber: 21.7 Consensus size: 3 35298727 AATCATTAAA * * * * * * 35298737 AAT AAT AAT AAT TAT ATT AAC AAT AAT AAT AAT AAT AAT TAT ATT AAC 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT 35298785 AAT AAT AAT AAT AAT AA 1 AAT AAT AAT AAT AAT AA 35298802 AATTCTTATT Statistics Matches: 50, Mismatches: 12, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 3 50 1.00 ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35 Consensus pattern (3 bp): AAT Found at i:35298775 original size:27 final size:27 Alignment explanation
Indices: 35298737--35298801 Score: 130 Period size: 27 Copynumber: 2.4 Consensus size: 27 35298727 AATCATTAAA 35298737 AATAATAATAATTATATTAACAATAAT 1 AATAATAATAATTATATTAACAATAAT 35298764 AATAATAATAATTATATTAACAATAAT 1 AATAATAATAATTATATTAACAATAAT 35298791 AATAATAATAA 1 AATAATAATAA 35298802 AATTCTTATT Statistics Matches: 38, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 27 38 1.00 ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35 Consensus pattern (27 bp): AATAATAATAATTATATTAACAATAAT Found at i:35299498 original size:17 final size:17 Alignment explanation
Indices: 35299475--35299510 Score: 65 Period size: 16 Copynumber: 2.2 Consensus size: 17 35299465 CATTTGTCAT 35299475 CTTTTTTTTTA-TTTTA 1 CTTTTTTTTTATTTTTA 35299491 CTTTTTTTTTATTTTTA 1 CTTTTTTTTTATTTTTA 35299508 CTT 1 CTT 35299511 ATATAATATA Statistics Matches: 19, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 16 11 0.58 17 8 0.42 ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81 Consensus pattern (17 bp): CTTTTTTTTTATTTTTA Found at i:35299519 original size:5 final size:5 Alignment explanation
Indices: 35299511--35299563 Score: 76 Period size: 5 Copynumber: 11.2 Consensus size: 5 35299501 ATTTTTACTT * 35299511 ATATA ATATA ATACA ATATA ATATA ATATA ATATA ATA-A A-ATA ATAT- 1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA 35299558 ATATA A 1 ATATA A 35299564 AACATAAAAA Statistics Matches: 43, Mismatches: 2, Indels: 6 0.84 0.04 0.12 Matches are distributed among these distances: 3 1 0.02 4 8 0.19 5 34 0.79 ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36 Consensus pattern (5 bp): ATATA Found at i:35299712 original size:22 final size:22 Alignment explanation
Indices: 35299684--35299793 Score: 148 Period size: 22 Copynumber: 5.0 Consensus size: 22 35299674 TTTATTGTTC * 35299684 AAACATGAGAGCTTAGTACGTG 1 AAACATGAGAGCTTAGTACGTT 35299706 AAACATGAGAGCTTAGTACGTT 1 AAACATGAGAGCTTAGTACGTT ** 35299728 AGCCATGAGAGCTTAGTACGTT 1 AAACATGAGAGCTTAGTACGTT ** * * * 35299750 AGCCATGAGGGTTTAGTTCGTT 1 AAACATGAGAGCTTAGTACGTT 35299772 AAACATGAGAGCTTAGTACGTT 1 AAACATGAGAGCTTAGTACGTT 35299794 GAACTCAATT Statistics Matches: 77, Mismatches: 11, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 22 77 1.00 ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28 Consensus pattern (22 bp): AAACATGAGAGCTTAGTACGTT Found at i:35300661 original size:108 final size:107 Alignment explanation
Indices: 35300430--35300722 Score: 462 Period size: 108 Copynumber: 2.7 Consensus size: 107 35300420 GTTAAACGTG * * * 35300430 AAATCGAAACCCAGCACCTTAGGGCACGTTTCTCGAATTTCCAAACACAAAACATTGCCTTATTT 1 AAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTA-TT * 35300495 TTGAAAAGTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAA 65 TTGAAAA-TTTTTAAAAGGATATTAAGCTATTTGGTCGAACGAA * 35300539 AAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTT 1 AAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATTT * * 35300604 TGAAAATTTTTGAAAAGGATATTAAG-TCATTTGGTGGAACGAT 66 TGAAAATTTTT-AAAAGGATATTAAGCT-ATTTGGTCGAACGAA * 35300647 AAATCGAAACCCAGTACCTTAGGGCACGTTCTTCGAATTTCCAAACGCAAAACATTGCCTTATTT 1 AAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATTT * 35300712 TGAAAAATTTT 66 TGAAAATTTTT 35300723 CCTTTTTGAA Statistics Matches: 172, Mismatches: 10, Indels: 5 0.92 0.05 0.03 Matches are distributed among these distances: 107 6 0.03 108 108 0.63 109 58 0.34 ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30 Consensus pattern (107 bp): AAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATTT TGAAAATTTTTAAAAGGATATTAAGCTATTTGGTCGAACGAA Found at i:35301223 original size:31 final size:32 Alignment explanation
Indices: 35301185--35301254 Score: 90 Period size: 31 Copynumber: 2.2 Consensus size: 32 35301175 ACATATATAC * 35301185 GTATATAACTAT-CATAAAATATA-AAAAGTAT 1 GTATATAACTATACA-AAAATATATAAAAATAT * 35301216 GTATATAAGTATACAAAAATATATAAAAATAT 1 GTATATAACTATACAAAAATATATAAAAATAT * 35301248 ATATATA 1 GTATATA 35301255 CTCCTATATA Statistics Matches: 34, Mismatches: 3, Indels: 3 0.85 0.08 0.08 Matches are distributed among these distances: 31 19 0.56 32 15 0.44 ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33 Consensus pattern (32 bp): GTATATAACTATACAAAAATATATAAAAATAT Found at i:35301282 original size:3 final size:3 Alignment explanation
Indices: 35301274--35301320 Score: 76 Period size: 3 Copynumber: 15.3 Consensus size: 3 35301264 ATATAAAAGC * 35301274 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAAT AAT AAT 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT 35301320 A 1 A 35301321 CGCTAAAATA Statistics Matches: 41, Mismatches: 2, Indels: 2 0.91 0.04 0.04 Matches are distributed among these distances: 3 38 0.93 4 3 0.07 ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30 Consensus pattern (3 bp): AAT Found at i:35301429 original size:28 final size:28 Alignment explanation
Indices: 35301355--35301437 Score: 87 Period size: 28 Copynumber: 2.9 Consensus size: 28 35301345 AAAAGTGTTA * 35301355 AAAAGGGACTAAATC-AAAGTAAAAGCAAC 1 AAAAGGGACTAAATCGAAA-TAAAA-AAAC * * * 35301384 AATACGGGGCGAAATCGAAATAAAAAAAC 1 AA-AAGGGACTAAATCGAAATAAAAAAAC * 35301413 AAAAGGGACTAAATCGAAAGAAAAA 1 AAAAGGGACTAAATCGAAATAAAAA 35301438 TAAAATTTAA Statistics Matches: 44, Mismatches: 8, Indels: 5 0.77 0.14 0.09 Matches are distributed among these distances: 28 19 0.43 29 7 0.16 30 15 0.34 31 3 0.07 ACGTcount: A:0.59, C:0.12, G:0.19, T:0.10 Consensus pattern (28 bp): AAAAGGGACTAAATCGAAATAAAAAAAC Found at i:35303383 original size:14 final size:12 Alignment explanation
Indices: 35303360--35303393 Score: 50 Period size: 13 Copynumber: 2.7 Consensus size: 12 35303350 GAAGGTACTG 35303360 TTTTTTTTTTCT 1 TTTTTTTTTTCT 35303372 ATTTTTTCTTTTCT 1 -TTTTTT-TTTTCT 35303386 TTTTTTTT 1 TTTTTTTT 35303394 GTTAATCATA Statistics Matches: 20, Mismatches: 0, Indels: 3 0.87 0.00 0.13 Matches are distributed among these distances: 12 2 0.10 13 12 0.60 14 6 0.30 ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88 Consensus pattern (12 bp): TTTTTTTTTTCT Found at i:35307199 original size:15 final size:15 Alignment explanation
Indices: 35307173--35307211 Score: 69 Period size: 15 Copynumber: 2.5 Consensus size: 15 35307163 GATATAAGCT 35307173 TGATTGAAAAACTTGA 1 TGATT-AAAAACTTGA 35307189 TGATTAAAAACTTGA 1 TGATTAAAAACTTGA 35307204 TGATTAAA 1 TGATTAAA 35307212 TGAACAAAGT Statistics Matches: 23, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 15 18 0.78 16 5 0.22 ACGTcount: A:0.46, C:0.05, G:0.15, T:0.33 Consensus pattern (15 bp): TGATTAAAAACTTGA Found at i:35313710 original size:31 final size:31 Alignment explanation
Indices: 35313665--35313727 Score: 99 Period size: 31 Copynumber: 2.0 Consensus size: 31 35313655 TCTAGACTAA * * 35313665 TCAGAATTTGATTGAAACAAATAAACAGAGT 1 TCAGAATTTCATTGAAACAAATAAACAAAGT * 35313696 TCAGAGTTTCATTGAAACAAATAAACAAAGT 1 TCAGAATTTCATTGAAACAAATAAACAAAGT 35313727 T 1 T 35313728 TAACTGAAAG Statistics Matches: 29, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 31 29 1.00 ACGTcount: A:0.48, C:0.11, G:0.14, T:0.27 Consensus pattern (31 bp): TCAGAATTTCATTGAAACAAATAAACAAAGT Found at i:35314540 original size:15 final size:14 Alignment explanation
Indices: 35314516--35314557 Score: 57 Period size: 15 Copynumber: 2.9 Consensus size: 14 35314506 TCTCCTTATG * 35314516 CTTCTTTTCTTTCTT 1 CTTCTCTTCTTTC-T 35314531 CTTCTCTTCTTTCT 1 CTTCTCTTCTTTCT 35314545 CTTCATCTTCTTT 1 CTTC-TCTTCTTT 35314558 TACCACCTCT Statistics Matches: 25, Mismatches: 1, Indels: 2 0.89 0.04 0.07 Matches are distributed among these distances: 14 5 0.20 15 20 0.80 ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67 Consensus pattern (14 bp): CTTCTCTTCTTTCT Found at i:35314541 original size:20 final size:20 Alignment explanation
Indices: 35314454--35314547 Score: 57 Period size: 23 Copynumber: 4.3 Consensus size: 20 35314444 TCCATGTATT * 35314454 TTTTCTTT-TTCTTCTCATC 1 TTTTCTTTCTTCTTCTCTTC 35314473 TTTCTCTTCATCTTCTTCTCTCTCAAC 1 TTT-TCTT--TCTTCTTCTCT-T---C * * * 35314500 CTTT-TTTCTCCTTATGCTTC 1 TTTTCTTTCTTCTTCT-CTTC 35314520 TTTTCTTTCTTCTTCTCTTC 1 TTTTCTTTCTTCTTCTCTTC 35314540 TTTCTCTT 1 TTT-TCTT 35314548 CATCTTCTTT Statistics Matches: 57, Mismatches: 7, Indels: 20 0.68 0.08 0.24 Matches are distributed among these distances: 19 3 0.05 20 15 0.26 21 13 0.23 22 1 0.02 23 16 0.28 24 3 0.05 25 2 0.04 26 1 0.02 27 3 0.05 ACGTcount: A:0.05, C:0.31, G:0.01, T:0.63 Consensus pattern (20 bp): TTTTCTTTCTTCTTCTCTTC Found at i:35314553 original size:20 final size:20 Alignment explanation
Indices: 35314516--35314555 Score: 55 Period size: 20 Copynumber: 2.0 Consensus size: 20 35314506 TCTCCTTATG * 35314516 CTTCTTTTCTTTCTTCTTCT 1 CTTCTTTTCTTTCATCTTCT 35314536 CTTC-TTTCTCTTCATCTTCT 1 CTTCTTTTCT-TTCATCTTCT 35314556 TTTACCACCT Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 19 5 0.28 20 13 0.72 ACGTcount: A:0.03, C:0.33, G:0.00, T:0.65 Consensus pattern (20 bp): CTTCTTTTCTTTCATCTTCT Found at i:35315190 original size:14 final size:15 Alignment explanation
Indices: 35315173--35315234 Score: 58 Period size: 14 Copynumber: 4.2 Consensus size: 15 35315163 CTTATCCTCC 35315173 TCTTCTT-TTTTTCT 1 TCTTCTTATTTTTCT * 35315187 TCTTCTTCTCTATTTCT 1 TCTTCTTAT-T-TTTCT 35315204 TC-TCTTATTTTTCT 1 TCTTCTTATTTTTCT * * 35315218 TTTTC-TCTTTTTCT 1 TCTTCTTATTTTTCT 35315232 TCT 1 TCT 35315235 ACTGTCTAAG Statistics Matches: 40, Mismatches: 4, Indels: 8 0.77 0.08 0.15 Matches are distributed among these distances: 14 23 0.57 15 4 0.10 16 6 0.15 17 7 0.17 ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73 Consensus pattern (15 bp): TCTTCTTATTTTTCT Found at i:35315204 original size:28 final size:28 Alignment explanation
Indices: 35315173--35315234 Score: 81 Period size: 28 Copynumber: 2.2 Consensus size: 28 35315163 CTTATCCTCC * 35315173 TCTTCT-TTTTTTCTTCTTCTTCTCTATT 1 TCTTCTCTTATTT-TTCTTCTTCTCTATT * * 35315201 TCTTCTCTTATTTTTCTTTTTCTCTTTT 1 TCTTCTCTTATTTTTCTTCTTCTCTATT 35315229 TCTTCT 1 TCTTCT 35315235 ACTGTCTAAG Statistics Matches: 30, Mismatches: 3, Indels: 2 0.86 0.09 0.06 Matches are distributed among these distances: 28 25 0.83 29 5 0.17 ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73 Consensus pattern (28 bp): TCTTCTCTTATTTTTCTTCTTCTCTATT Found at i:35327438 original size:2 final size:2 Alignment explanation
Indices: 35327431--35327467 Score: 74 Period size: 2 Copynumber: 18.5 Consensus size: 2 35327421 AAGAAAGGTG 35327431 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 35327468 GTAAATCTCT Statistics Matches: 35, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 35 1.00 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (2 bp): TA Found at i:35330273 original size:1 final size:1 Alignment explanation
Indices: 35330267--35330292 Score: 52 Period size: 1 Copynumber: 26.0 Consensus size: 1 35330257 GGCTGTTAGG 35330267 TTTTTTTTTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTT 35330293 GCACTTTGTC Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 25 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Found at i:35345817 original size:23 final size:22 Alignment explanation
Indices: 35345765--35345817 Score: 54 Period size: 23 Copynumber: 2.4 Consensus size: 22 35345755 TCCTTGTCTT * 35345765 TTTCTTTTGTTTCTTTTTCTAA 1 TTTCTTTTCTTTCTTTTTCTAA * * 35345787 CTTATTTTCTCTTCTTTCTTC-AA 1 TTTCTTTTCT-TTCTTT-TTCTAA 35345810 TTTCTTTT 1 TTTCTTTT 35345818 TCACTTTTCT Statistics Matches: 24, Mismatches: 5, Indels: 3 0.75 0.16 0.09 Matches are distributed among these distances: 22 7 0.29 23 14 0.58 24 3 0.12 ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70 Consensus pattern (22 bp): TTTCTTTTCTTTCTTTTTCTAA Found at i:35354239 original size:3 final size:3 Alignment explanation
Indices: 35354231--35354266 Score: 72 Period size: 3 Copynumber: 12.0 Consensus size: 3 35354221 ACTTTATCCC 35354231 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA 1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA 35354267 CAATCCAAAA Statistics Matches: 33, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 33 1.00 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (3 bp): TTA Found at i:35356514 original size:46 final size:46 Alignment explanation
Indices: 35356461--35356548 Score: 124 Period size: 46 Copynumber: 1.9 Consensus size: 46 35356451 CTCCTCAAAA * 35356461 GGTTGGAATTGTCTCCTA-TTAAAGTTTTGTCTTTCGACTTTGCGAG 1 GGTTGGAATTGTCTCC-ACTTAAAGTTTTGTCTTTCAACTTTGCGAG * * * 35356507 GGTTGGAATTGTCTCCACTTGAGGTTTTGTTTTTCAACTTTG 1 GGTTGGAATTGTCTCCACTTAAAGTTTTGTCTTTCAACTTTG 35356549 TGAAGAACCT Statistics Matches: 37, Mismatches: 4, Indels: 2 0.86 0.09 0.05 Matches are distributed among these distances: 45 1 0.03 46 36 0.97 ACGTcount: A:0.16, C:0.15, G:0.24, T:0.45 Consensus pattern (46 bp): GGTTGGAATTGTCTCCACTTAAAGTTTTGTCTTTCAACTTTGCGAG Found at i:35366842 original size:12 final size:12 Alignment explanation
Indices: 35366825--35366864 Score: 57 Period size: 12 Copynumber: 3.5 Consensus size: 12 35366815 CAAGTTTTTC 35366825 ATTTTAATATAT 1 ATTTTAATATAT 35366837 ATTTTAATATAT 1 ATTTTAATATAT * 35366849 GTTTTAA-ATAT 1 ATTTTAATATAT 35366860 -TTTTA 1 ATTTTA 35366865 TATTATTAAA Statistics Matches: 27, Mismatches: 1, Indels: 2 0.90 0.03 0.07 Matches are distributed among these distances: 10 5 0.19 11 4 0.15 12 18 0.67 ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60 Consensus pattern (12 bp): ATTTTAATATAT Found at i:35369323 original size:17 final size:17 Alignment explanation
Indices: 35369293--35369326 Score: 50 Period size: 17 Copynumber: 2.0 Consensus size: 17 35369283 AGTTAAATTG ** 35369293 ATTTTTTATGTTTTTAA 1 ATTTTTTAAATTTTTAA 35369310 ATTTTTTAAATTTTTAA 1 ATTTTTTAAATTTTTAA 35369327 TAATTTATTC Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 17 15 1.00 ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68 Consensus pattern (17 bp): ATTTTTTAAATTTTTAA Found at i:35373874 original size:25 final size:25 Alignment explanation
Indices: 35373827--35373875 Score: 64 Period size: 25 Copynumber: 2.0 Consensus size: 25 35373817 TAGGTGTAGG * * * 35373827 TATTGTTTTATATTTTTGCTTTTTA 1 TATTGATTTATATATTGGCTTTTTA 35373852 TATTGATTTATATATTGG-TTTTTA 1 TATTGATTTATATATTGGCTTTTTA 35373876 GGTATTCTAT Statistics Matches: 21, Mismatches: 3, Indels: 1 0.84 0.12 0.04 Matches are distributed among these distances: 24 6 0.29 25 15 0.71 ACGTcount: A:0.20, C:0.02, G:0.10, T:0.67 Consensus pattern (25 bp): TATTGATTTATATATTGGCTTTTTA Found at i:35378542 original size:11 final size:11 Alignment explanation
Indices: 35378526--35378557 Score: 55 Period size: 11 Copynumber: 2.8 Consensus size: 11 35378516 ATTGTAACAC 35378526 AAGAAAAAAAG 1 AAGAAAAAAAG 35378537 AAGAAAAAAAG 1 AAGAAAAAAAG 35378548 AAGAAGAAAA 1 AAGAA-AAAA 35378558 CAACGAAATT Statistics Matches: 20, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 11 16 0.80 12 4 0.20 ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00 Consensus pattern (11 bp): AAGAAAAAAAG Found at i:35379603 original size:21 final size:22 Alignment explanation
Indices: 35379578--35379644 Score: 72 Period size: 21 Copynumber: 3.2 Consensus size: 22 35379568 ATTTTATGTA 35379578 ATTATATTATTATCATAC-ATT 1 ATTATATTATTATCATACTATT * 35379599 TTTATATTATT-TC--ACTATT 1 ATTATATTATTATCATACTATT * 35379618 ATTATCATTATTATCATA-TAGT 1 ATTAT-ATTATTATCATACTATT 35379640 ATTAT 1 ATTAT 35379645 TAATTGAATA Statistics Matches: 38, Mismatches: 3, Indels: 9 0.76 0.06 0.18 Matches are distributed among these distances: 18 2 0.05 19 7 0.18 20 8 0.21 21 12 0.32 22 8 0.21 23 1 0.03 ACGTcount: A:0.34, C:0.09, G:0.01, T:0.55 Consensus pattern (22 bp): ATTATATTATTATCATACTATT Found at i:35379620 original size:3 final size:3 Alignment explanation
Indices: 35379614--35379689 Score: 62 Period size: 3 Copynumber: 24.0 Consensus size: 3 35379604 ATTATTTCAC * * * * 35379614 TAT TAT TAT CAT TAT TAT CAT ATAG TAT TAT TAAT TGAA TAT TAT TAT 1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT T-AT T-AT TAT TAT TAT * * 35379662 TAT TGT TAT TAT TATT TCT TAT TAT TAT 1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT 35379690 ATTCACTATA Statistics Matches: 57, Mismatches: 13, Indels: 6 0.75 0.17 0.08 Matches are distributed among these distances: 3 49 0.86 4 8 0.14 ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59 Consensus pattern (3 bp): TAT Found at i:35386024 original size:44 final size:43 Alignment explanation
Indices: 35385924--35386035 Score: 118 Period size: 43 Copynumber: 2.6 Consensus size: 43 35385914 CTTATCTCCT * * * * 35385924 TGAAGTTGCAGTGGAGCAAG-ATGAAGCTACAAATCTTATACCT 1 TGAAGTTGCAGTGG-GTAGGAATGAAGCTACAAATCCTATACCC * * * * 35385967 TGAAGTTGCAGTGGGTCGGATTGAAGCTGCAATTCCTATACCCC 1 TGAAGTTGCAGTGGGTAGGAATGAAGCTACAAATCCTATA-CCC * 35386011 TGAAGTTGTAGTGGGTAGGAATGAA 1 TGAAGTTGCAGTGGGTAGGAATGAA 35386036 AATATAATGG Statistics Matches: 56, Mismatches: 11, Indels: 3 0.80 0.16 0.04 Matches are distributed among these distances: 42 2 0.04 43 30 0.54 44 24 0.43 ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27 Consensus pattern (43 bp): TGAAGTTGCAGTGGGTAGGAATGAAGCTACAAATCCTATACCC Found at i:35386045 original size:137 final size:138 Alignment explanation
Indices: 35385829--35386136 Score: 392 Period size: 137 Copynumber: 2.2 Consensus size: 138 35385819 ATCCGGTCTT * *** ** * 35385829 CCTGAAGTTGTAGTGAAACGGA-TGAAGCTACAATTCCTATACCTTTGAAGTTACCGTGGGTCAG 1 CCTGAAGTTGCAGTGGGTCGGATTGAAGCTACAATTCCTATACCCCTGAAGTTACAGTGGGTCAG * * 35385893 AATAAAATTACAATGGTGAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAA 66 AATAAAATTACAATGGTGAATCTTATCTCCTTGAAGTTACAGTGGAGCAA-ACTAAAGCTACAAA * 35385957 TCTTATA-C 130 TCCTATACC * * ** 35385965 CTTGAAGTTGCAGTGGGTCGGATTGAAGCTGCAATTCCTATACCCCTGAAGTTGTAGTGGGT-AG 1 CCTGAAGTTGCAGTGGGTCGGATTGAAGCTACAATTCCTATACCCCTGAAGTTACAGTGGGTCA- * 35386029 GAATGAAAA-TATAATGGTGAATCTTATCTCCTTGAAGTTACAGTGGAGCAAACTAAAGCTACAA 65 GAAT-AAAATTACAATGGTGAATCTTATCTCCTTGAAGTTACAGTGGAGCAAACTAAAGCTACAA 35386093 ATCCTATACC 129 ATCCTATACC * * * 35386103 CCTGAAGTTGTAGTGGGTCAGATTGAAACTACAA 1 CCTGAAGTTGCAGTGGGTCGGATTGAAGCTACAA 35386137 ATGACAAATC Statistics Matches: 147, Mismatches: 20, Indels: 8 0.84 0.11 0.05 Matches are distributed among these distances: 136 19 0.13 137 94 0.64 138 34 0.23 ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28 Consensus pattern (138 bp): CCTGAAGTTGCAGTGGGTCGGATTGAAGCTACAATTCCTATACCCCTGAAGTTACAGTGGGTCAG AATAAAATTACAATGGTGAATCTTATCTCCTTGAAGTTACAGTGGAGCAAACTAAAGCTACAAAT CCTATACC Found at i:35386135 original size:44 final size:44 Alignment explanation
Indices: 35385924--35386353 Score: 131 Period size: 44 Copynumber: 9.4 Consensus size: 44 35385914 CTTATCTCCT * * * 35385924 TGAAGTTGCAGTGGAG-CAAGA-TGAAGCTACAAATCTTATA-CCT 1 TGAAGTTGCAGTGG-GTC-AGATTGAAACTACAAATCCTATACCCC * * * * 35385967 TGAAGTTGCAGTGGGTCGGATTGAAGCTGCAATTCCTATACCCC 1 TGAAGTTGCAGTGGGTCAGATTGAAACTACAAATCCTATACCCC * * * * * * 35386011 TGAAGTTGTAGTGGGT-AGGAATGAAAATATAATGGTGAATCTTAT-CTCCT 1 TGAAGTTGCAGTGGGTCA-GATTGAAACTA-CA-----AATCCTATAC-CCC * * * 35386061 TGAAGTTACAGTGGAG-CAAACT-AAAGCTACAAATCCTATACCCC 1 TGAAGTTGCAGTGG-GTCAGATTGAAA-CTACAAATCCTATACCCC * * 35386105 TGAAGTTGTAGTGGGTCAGATTGAAACTACAAATGACAAATCT-TATCTCTC 1 TGAAGTTGCAGTGGGTCAGATTGAAACTACAAAT--C----CTATA-C-CCC * * * * 35386156 TAAAGTTACAGTGGAG-CAAGA-TGAAGCTACAAGTCCTATACCCC 1 TGAAGTTGCAGTGG-GTC-AGATTGAAACTACAAATCCTATACCCC ** * 35386200 TGAAGTTATAGTGGGTC-GAATTGAAACTACAATGGCAAATCTTAT-CTCCC 1 TGAAGTTGCAGTGGGTCAG-ATTGAAACT---A---CAAATCCTATAC-CCC * * 35386250 TAAAGTTGCAGTAGAG-CAAGA-T-AAAGCTACAAATCCTATACCCC 1 TGAAGTTGCAGT-GGGTC-AGATTGAAA-CTACAAATCCTATACCCC * * * 35386294 TGAAGTTGCAGTGGAG-CAAGA-T-AAAGCTACAAATTCTATGCCTC 1 TGAAGTTGCAGTGG-GTC-AGATTGAAA-CTACAAATCCTATACCCC * 35386338 TGAACTTGCAGTGGGT 1 TGAAGTTGCAGTGGGT 35386354 TGGAATAAAA Statistics Matches: 292, Mismatches: 50, Indels: 89 0.68 0.12 0.21 Matches are distributed among these distances: 42 4 0.01 43 36 0.12 44 140 0.48 45 9 0.03 46 3 0.01 47 2 0.01 49 12 0.04 50 51 0.17 51 30 0.10 52 5 0.02 ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27 Consensus pattern (44 bp): TGAAGTTGCAGTGGGTCAGATTGAAACTACAAATCCTATACCCC Found at i:35386183 original size:95 final size:93 Alignment explanation
Indices: 35385990--35386307 Score: 417 Period size: 94 Copynumber: 3.4 Consensus size: 93 35385980 GGTCGGATTG * * * * * ** 35385990 AAGCTGCAATTCCTATACCCCTGAAGTTGTAGTGGGT-AGGAATGAAAATATAATGGTGAATCTT 1 AAGCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCA-GATTGAAACTACAATGGCAAATCTT * 35386054 ATCTCCTTGAAGTTACAGTGGAGCAA-ACTA 65 ATCTCC-TAAAGTTACAGTGGAGCAAGA-TA * 35386084 AAGCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAACTACAAATGACAAATCTT 1 AAGCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAACTAC-AATGGCAAATCTT * 35386149 ATCTCTCTAAAGTTACAGTGGAGCAAGATG 65 ATCTC-CTAAAGTTACAGTGGAGCAAGATA * * 35386179 AAGCTACAAGTCCTATACCCCTGAAGTTATAGTGGGTC-GAATTGAAACTACAATGGCAAATCTT 1 AAGCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAG-ATTGAAACTACAATGGCAAATCTT * * 35386243 ATCTCCCTAAAGTTGCAGTAGAGCAAGATA 65 ATCT-CCTAAAGTTACAGTGGAGCAAGATA * 35386273 AAGCTACAAATCCTATACCCCTGAAGTTGCAGTGG 1 AAGCTACAAATCCTATACCCCTGAAGTTGTAGTGG 35386308 AGCAAGATAA Statistics Matches: 199, Mismatches: 19, Indels: 12 0.87 0.08 0.05 Matches are distributed among these distances: 94 114 0.57 95 83 0.42 96 2 0.01 ACGTcount: A:0.34, C:0.19, G:0.20, T:0.26 Consensus pattern (93 bp): AAGCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAACTACAATGGCAAATCTTA TCTCCTAAAGTTACAGTGGAGCAAGATA Found at i:35386321 original size:138 final size:138 Alignment explanation
Indices: 35386158--35386409 Score: 326 Period size: 138 Copynumber: 1.8 Consensus size: 138 35386148 TATCTCTCTA * * * * 35386158 AAGTTACAGTGGAGCAAGATGAAGCTACAAGTCCTATACCCCTGAAGTTATAGTGGG-TCGAATT 1 AAGTTACAGTGGAGCAAGATAAAGCTACAAATCCTATACCCCTGAACTTACAGTGGGTTCGAA-T * *** * * 35386222 GAAACTACAATGGCAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAAGATAAAGCTACAAATCCT 65 AAAACTACAACAACAAATCTTATCTCCCTAAAGTTGAAATAGAGCAAGATAAAGCTACAAATCCT 35386287 ATACCCCTG 130 ATACCCCTG * * * * * * 35386296 AAGTTGCAGTGGAGCAAGATAAAGCTACAAATTCTATGCCTCTGAACTTGCAGTGGGTTGGAATA 1 AAGTTACAGTGGAGCAAGATAAAGCTACAAATCCTATACCCCTGAACTTACAGTGGGTTCGAATA * * 35386361 AAACTACAACAACAAATCTTATCTCCTTGAAGTTGAAATAGAGCAAGAT 66 AAACTACAACAACAAATCTTATCTCCCTAAAGTTGAAATAGAGCAAGAT 35386410 GAAACTTTGA Statistics Matches: 95, Mismatches: 18, Indels: 2 0.83 0.16 0.02 Matches are distributed among these distances: 138 91 0.96 139 4 0.04 ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25 Consensus pattern (138 bp): AAGTTACAGTGGAGCAAGATAAAGCTACAAATCCTATACCCCTGAACTTACAGTGGGTTCGAATA AAACTACAACAACAAATCTTATCTCCCTAAAGTTGAAATAGAGCAAGATAAAGCTACAAATCCTA TACCCCTG Found at i:35386369 original size:44 final size:44 Alignment explanation
Indices: 35386255--35386351 Score: 149 Period size: 44 Copynumber: 2.2 Consensus size: 44 35386245 CTCCCTAAAG * * 35386255 TTGCAGTAGAGCAAGATAAAGCTACAAATCCTATACCCCTGAAG 1 TTGCAGTGGAGCAAGATAAAGCTACAAATCCTATACCCCTGAAC * * * 35386299 TTGCAGTGGAGCAAGATAAAGCTACAAATTCTATGCCTCTGAAC 1 TTGCAGTGGAGCAAGATAAAGCTACAAATCCTATACCCCTGAAC 35386343 TTGCAGTGG 1 TTGCAGTGG 35386352 GTTGGAATAA Statistics Matches: 48, Mismatches: 5, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 44 48 1.00 ACGTcount: A:0.34, C:0.21, G:0.22, T:0.24 Consensus pattern (44 bp): TTGCAGTGGAGCAAGATAAAGCTACAAATCCTATACCCCTGAAC Found at i:35387000 original size:31 final size:31 Alignment explanation
Indices: 35386950--35387011 Score: 81 Period size: 31 Copynumber: 2.0 Consensus size: 31 35386940 AAGAACAGAG * * 35386950 AGCAGAGAACAGCAGAAACACAAAAGTAGAAA 1 AGCAGAGAACAGCAAAAACA-AAAAGGAGAAA * 35386982 AGCA-AGAATAGCAAAAACAAAAAGGAGAAA 1 AGCAGAGAACAGCAAAAACAAAAAGGAGAAA 35387012 GAAAAAAAAA Statistics Matches: 27, Mismatches: 3, Indels: 2 0.84 0.09 0.06 Matches are distributed among these distances: 30 10 0.37 31 13 0.48 32 4 0.15 ACGTcount: A:0.63, C:0.13, G:0.21, T:0.03 Consensus pattern (31 bp): AGCAGAGAACAGCAAAAACAAAAAGGAGAAA Found at i:35396238 original size:2 final size:2 Alignment explanation
Indices: 35396231--35396262 Score: 55 Period size: 2 Copynumber: 16.0 Consensus size: 2 35396221 AGTAGCTTAC * 35396231 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 35396263 TAAAATAGTG Statistics Matches: 28, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 2 28 1.00 ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47 Consensus pattern (2 bp): AT Found at i:35401541 original size:20 final size:20 Alignment explanation
Indices: 35401516--35401555 Score: 71 Period size: 20 Copynumber: 2.0 Consensus size: 20 35401506 ATCTCGAGAA * 35401516 AACAATGTTTCACATCCAAT 1 AACAATGTGTCACATCCAAT 35401536 AACAATGTGTCACATCCAAT 1 AACAATGTGTCACATCCAAT 35401556 GCATTAGGAC Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 19 1.00 ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28 Consensus pattern (20 bp): AACAATGTGTCACATCCAAT Found at i:35402530 original size:18 final size:18 Alignment explanation
Indices: 35402508--35402549 Score: 57 Period size: 18 Copynumber: 2.3 Consensus size: 18 35402498 TAATAATAAT * 35402508 AATAATAACAGTATTAAA 1 AATAATAACAGTAGTAAA * * 35402526 CATAATAATAGTAGTAAA 1 AATAATAACAGTAGTAAA 35402544 AATAAT 1 AATAAT 35402550 GATAACATTA Statistics Matches: 20, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 18 20 1.00 ACGTcount: A:0.60, C:0.05, G:0.07, T:0.29 Consensus pattern (18 bp): AATAATAACAGTAGTAAA Found at i:35402530 original size:21 final size:21 Alignment explanation
Indices: 35402463--35402570 Score: 78 Period size: 21 Copynumber: 5.3 Consensus size: 21 35402453 AATAAGTAAT * * * * 35402463 AATAATAATAATAATAATAAT 1 AATAATAATAACAGTATTAAA * * * * 35402484 AATAATAATAATAATAATAAT 1 AATAATAATAACAGTATTAAA 35402505 AATAATAATAACAGTATTAAA 1 AATAATAATAACAGTATTAAA * * 35402526 CATAATAAT---AGTAGTAAA 1 AATAATAATAACAGTATTAAA * * 35402544 AATAATGATAACATTATTAAA 1 AATAATAATAACAGTATTAAA * 35402565 ATTAAT 1 AATAAT 35402571 TAATTTAATA Statistics Matches: 73, Mismatches: 11, Indels: 6 0.81 0.12 0.07 Matches are distributed among these distances: 18 15 0.21 21 58 0.79 ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32 Consensus pattern (21 bp): AATAATAATAACAGTATTAAA Found at i:35402535 original size:3 final size:3 Alignment explanation
Indices: 35402422--35402515 Score: 152 Period size: 3 Copynumber: 30.0 Consensus size: 3 35402412 NNNNNNNNNN 35402422 TAA TAA TAA TAA TAA TAA TAA TAA GTAAA TAAA TAA GTAA TAA TAA TAA 1 TAA TAA TAA TAA TAA TAA TAA TAA -T-AA T-AA TAA -TAA TAA TAA TAA 35402471 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA 1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA 35402516 CAGTATTAAA Statistics Matches: 88, Mismatches: 0, Indels: 6 0.94 0.00 0.06 Matches are distributed among these distances: 3 77 0.88 4 9 0.10 5 2 0.02 ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32 Consensus pattern (3 bp): TAA Found at i:35404148 original size:29 final size:29 Alignment explanation
Indices: 35404115--35404211 Score: 95 Period size: 29 Copynumber: 3.3 Consensus size: 29 35404105 GAAAACTTTA 35404115 GTGACTAAATTGTAACTTTTTTTAGTTTT 1 GTGACTAAATTGTAACTTTTTTTAGTTTT * ** * **** * 35404144 GTGACTAAAATAAAAATATACCATAGTTTA 1 GTGACTAAATTGTAACT-TTTTTTAGTTTT * 35404174 GTGACTAAATTGTAACTTTTTTTAGTTAT 1 GTGACTAAATTGTAACTTTTTTTAGTTTT 35404203 GTGACTAAA 1 GTGACTAAA 35404212 ATAAAAATAT Statistics Matches: 48, Mismatches: 19, Indels: 2 0.70 0.28 0.03 Matches are distributed among these distances: 29 28 0.58 30 20 0.42 ACGTcount: A:0.35, C:0.08, G:0.13, T:0.43 Consensus pattern (29 bp): GTGACTAAATTGTAACTTTTTTTAGTTTT Found at i:35404177 original size:59 final size:60 Alignment explanation
Indices: 35404111--35404241 Score: 237 Period size: 59 Copynumber: 2.2 Consensus size: 60 35404101 ATTTGAAAAC * 35404111 TTTAGTGACTAAATTGTAACTTTTTTTAGTTTTGTGACTAAAATAAAAATATA-CCATAG 1 TTTAGTGACTAAATTGTAACTTTTTTTAGTTATGTGACTAAAATAAAAATATACCCATAG 35404170 TTTAGTGACTAAATTGTAACTTTTTTTAGTTATGTGACTAAAATAAAAATATACCCATAG 1 TTTAGTGACTAAATTGTAACTTTTTTTAGTTATGTGACTAAAATAAAAATATACCCATAG * 35404230 TTCAGTGACTAA 1 TTTAGTGACTAA 35404242 TGGTGTAATT Statistics Matches: 69, Mismatches: 2, Indels: 1 0.96 0.03 0.01 Matches are distributed among these distances: 59 52 0.75 60 17 0.25 ACGTcount: A:0.37, C:0.10, G:0.12, T:0.40 Consensus pattern (60 bp): TTTAGTGACTAAATTGTAACTTTTTTTAGTTATGTGACTAAAATAAAAATATACCCATAG Found at i:35405593 original size:109 final size:109 Alignment explanation
Indices: 35405322--35405855 Score: 765 Period size: 109 Copynumber: 4.9 Consensus size: 109 35405312 GACATGGATT * * * * 35405322 AAAA-TTTAAGAGGATATTTGGCTATTTGGT-TAA-ACGAGAAATCGAAACCCAGCACATTAGGG 1 AAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAGCACATTAGGG * * * * * 35405384 CACATTTCCTCGAATTTCCAAAGGCAAAATATTGTCTTA-TTTC 66 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTG * 35405427 AAAATTTTAAAAGGATATTTGGCTATTTGATCGAACAAGAAAAATCGAAACCCAGCACATTAGGG 1 AAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAGCACATTAGGG * * 35405492 CACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTG 66 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTG * * 35405536 AAAATTTTAAAAGGATATTTAGCTATTTGGTTGAACAAGAAAAATCGAAACCCAGCACATTAGGG 1 AAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAGCACATTAGGG * * 35405601 CACGTTTTCTCGAATTTCCAAACTCAAAATATTGCCTTACTTCG 66 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTG * * * 35405645 -AAATTTAAAAAGGATATTTGGTTATTTGGTCGAACGAGAAAAAATCGAAACCCAGCACATTAGG 1 AAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACAAG-AAAAATCGAAACCCAGCACATTAGG * * * 35405709 GCACGTTTTCTCGAATTTCCAAATGTAAAATATCGCCTTACTTTG 65 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTG * * * * 35405754 -AAATTTTAAAAGGATATTTAGCTACTTGGTCGAACGAGAAAGATCGAAACCCAGCACATTAGGG 1 AAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAGCACATTAGGG * * 35405818 CACATTTCCTCGAATTTCCAAACGCAAAATATTGCCTT 66 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTT 35405856 TATTATTTTT Statistics Matches: 386, Mismatches: 38, Indels: 7 0.90 0.09 0.02 Matches are distributed among these distances: 105 4 0.01 106 24 0.06 107 2 0.01 108 152 0.39 109 204 0.53 ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29 Consensus pattern (109 bp): AAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAGCACATTAGGG CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTG Found at i:35405760 original size:217 final size:217 Alignment explanation
Indices: 35405322--35405855 Score: 815 Period size: 217 Copynumber: 2.5 Consensus size: 217 35405312 GACATGGATT * * * * 35405322 AAAA-TTTAAGAGGATATTTGGCTATTTGGTT-AA-ACGAGAAATCGAAACCCAGCACATTAGGG 1 AAAATTTTAAAAGGATATTTAGCTATTTGGTTGAACAAGAAAAATCGAAACCCAGCACATTAGGG * * * * 35405384 CACATTTCCTCGAATTTCCAAAGGCAAAATATTGTCTTATTTCAAAATTTTAAAAGGATATTTGG 66 CACATTTCCTCGAATTTCCAAACGCAAAATATTGCCTTACTTCAAAATTTAAAAAGGATATTTGG 35405449 CTATTTGATCGAACAAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAAA 131 CTATTTGATCGAACAAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAAA * * 35405514 CGCAAAACATTGCCTTATTTTG 196 CGCAAAACATCGCCTTACTTTG 35405536 AAAATTTTAAAAGGATATTTAGCTATTTGGTTGAACAAGAAAAATCGAAACCCAGCACATTAGGG 1 AAAATTTTAAAAGGATATTTAGCTATTTGGTTGAACAAGAAAAATCGAAACCCAGCACATTAGGG * * * * 35405601 CACGTTTTCTCGAATTTCCAAACTCAAAATATTGCCTTACTTCGAAATTTAAAAAGGATATTTGG 66 CACATTTCCTCGAATTTCCAAACGCAAAATATTGCCTTACTTCAAAATTTAAAAAGGATATTTGG * * * 35405666 TTATTTGGTCGAACGAGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAA 131 CTATTTGATCGAACAAG-AAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAA * * * 35405731 ATGTAAAATATCGCCTTACTTTG 195 ACGCAAAACATCGCCTTACTTTG * * * * 35405754 -AAATTTTAAAAGGATATTTAGCTACTTGGTCGAACGAGAAAGATCGAAACCCAGCACATTAGGG 1 AAAATTTTAAAAGGATATTTAGCTATTTGGTTGAACAAGAAAAATCGAAACCCAGCACATTAGGG 35405818 CACATTTCCTCGAATTTCCAAACGCAAAATATTGCCTT 66 CACATTTCCTCGAATTTCCAAACGCAAAATATTGCCTT 35405856 TATTATTTTT Statistics Matches: 289, Mismatches: 27, Indels: 5 0.90 0.08 0.02 Matches are distributed among these distances: 214 4 0.01 215 25 0.09 216 2 0.01 217 193 0.67 218 65 0.22 ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29 Consensus pattern (217 bp): AAAATTTTAAAAGGATATTTAGCTATTTGGTTGAACAAGAAAAATCGAAACCCAGCACATTAGGG CACATTTCCTCGAATTTCCAAACGCAAAATATTGCCTTACTTCAAAATTTAAAAAGGATATTTGG CTATTTGATCGAACAAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAAA CGCAAAACATCGCCTTACTTTG Found at i:35407093 original size:98 final size:98 Alignment explanation
Indices: 35406922--35407118 Score: 331 Period size: 98 Copynumber: 2.0 Consensus size: 98 35406912 GTGCGATAAA * 35406922 ACTTTAAAAGAACATCCACCTATCCAAGATTTAAGAAATCACACCCAATACGTTAAGGCATGATT 1 ACTTTAAAAGAACATCCACCTATCCAAGATTTAAGAAATCACACCCAATACGTTAAGGCACGATT * * 35406987 CCTTTAAAATCCTAAACTCGGAATACTTCCTTT 66 CCTCTAAAATCCCAAACTCGGAATACTTCCTTT * * * 35407020 ACTTTAAAAGAACATCCACTTGTCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT 1 ACTTTAAAAGAACATCCACCTATCCAAGATTTAAGAAATCACACCCAATACGTTAAGGCACGATT * 35407085 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT 66 CCTCTAAAATCCCAAACTCGGAATACTTCCTTT 35407118 A 1 A 35407119 TTATTTTTAA Statistics Matches: 92, Mismatches: 7, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 98 92 1.00 ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28 Consensus pattern (98 bp): ACTTTAAAAGAACATCCACCTATCCAAGATTTAAGAAATCACACCCAATACGTTAAGGCACGATT CCTCTAAAATCCCAAACTCGGAATACTTCCTTT Found at i:35407455 original size:17 final size:19 Alignment explanation
Indices: 35407435--35407479 Score: 60 Period size: 17 Copynumber: 2.5 Consensus size: 19 35407425 TTAATGACAT 35407435 AAAAATAATAT-AAAT-AA 1 AAAAATAATATGAAATGAA 35407452 AAAAATAA-ATGAAATGAA 1 AAAAATAATATGAAATGAA * 35407470 AAAAACAATA 1 AAAAATAATA 35407480 ATCCATGTCA Statistics Matches: 24, Mismatches: 1, Indels: 4 0.83 0.03 0.14 Matches are distributed among these distances: 16 2 0.08 17 12 0.50 18 9 0.38 19 1 0.04 ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18 Consensus pattern (19 bp): AAAAATAATATGAAATGAA Found at i:35407937 original size:15 final size:14 Alignment explanation
Indices: 35407909--35407962 Score: 51 Period size: 15 Copynumber: 3.9 Consensus size: 14 35407899 ATATATACAT * 35407909 ATATTAAAAAAATA 1 ATATGAAAAAAATA 35407923 ATATGAAAAAGAATA 1 ATATGAAAAA-AATA 35407938 ATA--AAAAAAACTA 1 ATATGAAAAAAA-TA 35407951 A-ATGTAAAAAAA 1 ATATG-AAAAAAA 35407963 GAAAATGGAG Statistics Matches: 34, Mismatches: 1, Indels: 9 0.77 0.02 0.20 Matches are distributed among these distances: 12 3 0.09 13 8 0.24 14 9 0.26 15 14 0.41 ACGTcount: A:0.72, C:0.02, G:0.06, T:0.20 Consensus pattern (14 bp): ATATGAAAAAAATA Found at i:35408178 original size:22 final size:23 Alignment explanation
Indices: 35408132--35408178 Score: 62 Period size: 24 Copynumber: 2.0 Consensus size: 23 35408122 CGAATTGGAA 35408132 TTTAAAATAAATTAAAGGCCTAAT 1 TTTAAAATAAATTAAA-GCCTAAT 35408156 TTTAAAA-AAATATAAA-CCTAAT 1 TTTAAAATAAAT-TAAAGCCTAAT 35408178 T 1 T 35408179 GCAAAAGTGT Statistics Matches: 22, Mismatches: 0, Indels: 4 0.85 0.00 0.15 Matches are distributed among these distances: 22 7 0.32 23 4 0.18 24 11 0.50 ACGTcount: A:0.53, C:0.09, G:0.04, T:0.34 Consensus pattern (23 bp): TTTAAAATAAATTAAAGCCTAAT Found at i:35409536 original size:132 final size:132 Alignment explanation
Indices: 35409363--35410269 Score: 1528 Period size: 132 Copynumber: 6.9 Consensus size: 132 35409353 AGACTTGTAG * * * * 35409363 CTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGGTTGGTGGCTTTAATTTGCTTCCCACTAT 1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT * * * 35409428 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTACA 66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATA 35409493 AT 131 AT * 35409495 CTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT 1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT * 35409560 CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTA---CTTAGGGAGATAAGATCTATA 66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATA 35409622 AT 131 AT * 35409624 TTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT 1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT * * 35409689 CTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTATA 66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATA 35409754 AT 131 AT * * 35409756 CTTCAACCTTCTCCGCTGCTGCTCTGGGAGACAAGGCTTGGTGGATTAAATCTGCTTCCCACTAT 1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT * * * * * 35409821 CTTGGAAAGATAAGATTCACCGTCTTCAATCTGCTCCACTACTGATTAGAGAGATAAGATCTACA 66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATA 35409886 AT 131 AT 35409888 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT 1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT 35409953 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC--T- 66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATA 35410015 A- 131 AT * * 35410016 --T-AACCTTCTCCGCTGCTGCTCAAGGAGACAAGGTTTGGTGGCTTAAATCTGCTTCCCACTAT 1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT * * 35410078 CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTATA 66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATA 35410143 AT 131 AT 35410145 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT 1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT 35410210 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTCAGGGAGATAAGA 66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT-AGGGAGATAAGA 35410270 CTACTGGTTA Statistics Matches: 727, Mismatches: 37, Indels: 21 0.93 0.05 0.03 Matches are distributed among these distances: 125 118 0.16 126 1 0.00 127 1 0.00 128 1 0.00 129 123 0.17 131 1 0.00 132 470 0.65 133 12 0.02 ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30 Consensus pattern (132 bp): CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATA AT Found at i:35410166 original size:257 final size:259 Alignment explanation
Indices: 35409363--35410269 Score: 1500 Period size: 257 Copynumber: 3.5 Consensus size: 259 35409353 AGACTTGTAG * * * * 35409363 CTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGGTTGGTGGCTTTAATTTGCTTCCCACTAT 1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT * * 35409428 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTACA 66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT--A 35409493 ATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT 129 A--TTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT * 35409558 ATCTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTC-C-ACTACTTAGGGAGATAAGATCTAT 192 ATCTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCACTACTGCTTAGGGAGATAAGATCTAT 35409621 AAT 257 AAT * 35409624 TTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT 1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT * * 35409689 CTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTATA 66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC--TA ** * 35409754 ATCTTCAACCTTCTCCGCTGCTGCTCTGGGAGACAAGGCTTGGTGGATTAAATCTGCTTCCCACT 129 A--TTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT * * * * * 35409819 ATCTTGGAAAGATAAGATTCACCGTCTTCAATCTGCTCCACTACTGATTAGAGAGATAAGATCTA 192 ATCTTGGAAAGATAAGATTCGCCATCTTCGATCTGCT-CACTACTGCTTAGGGAGATAAGATCTA * 35409884 CAAT 256 TAAT 35409888 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT 1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT 35409953 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-A- 66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAT * 35410016 T-AACCTTCTCCGCTGCTGCTCAAGGAGACAAGGTTTGGTGGCTTAAATCTGCTTCCCACTATCT 131 TCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCT 35410080 TGGAAAGATAAGATTCGCCATCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTATAAT 196 TGGAAAGATAAGATTCGCCATCTTCGATCTGCTC-ACTACTGCTTAGGGAGATAAGATCTATAAT 35410145 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT 1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT 35410210 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTCAGGGAGATAAGA 66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT-AGGGAGATAAGA 35410270 CTACTGGTTA Statistics Matches: 607, Mismatches: 32, Indels: 17 0.93 0.05 0.03 Matches are distributed among these distances: 256 1 0.00 257 228 0.38 258 13 0.02 261 215 0.35 262 2 0.00 263 2 0.00 264 146 0.24 ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30 Consensus pattern (259 bp): CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAT TCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCT TGGAAAGATAAGATTCGCCATCTTCGATCTGCTCACTACTGCTTAGGGAGATAAGATCTATAAT Found at i:35421796 original size:98 final size:98 Alignment explanation
Indices: 35421625--35421821 Score: 358 Period size: 98 Copynumber: 2.0 Consensus size: 98 35421615 GTGCGATAAA 35421625 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT 1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT * * 35421690 CCTTTAAAATCCCAAACTTGGAATACTTCCTTT 66 CCTCTAAAATCCCAAACTCGGAATACTTCCTTT * 35421723 ACTTTAAAAGAACATCCACTTGTCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT 1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT * 35421788 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT 66 CCTCTAAAATCCCAAACTCGGAATACTTCCTTT 35421821 A 1 A 35421822 TTATTTTTAA Statistics Matches: 95, Mismatches: 4, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 98 95 1.00 ACGTcount: A:0.37, C:0.25, G:0.11, T:0.28 Consensus pattern (98 bp): ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT CCTCTAAAATCCCAAACTCGGAATACTTCCTTT Done.