Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 124 of 190
Found at i:37141255 original size:182 final size:182
Alignment explanation
Indices: 37140948--37141313 Score: 669
Period size: 182 Copynumber: 2.0 Consensus size: 182
37140938 TGAGAAAACC
37140948 TTGAGCTGGAGGCGTCCAACAGATATCCCTCCAAACTGCTTTAACAGGAGTAGCCGAGAAGCAAA
1 TTGAGCTGGAGGCGTCCAACAGATATCCCTCCAAACTGCTTTAACAGGAGTAGCCGAGAAGCAAA
*
37141013 GCAGTGGGCAATCCCACCAAGCTGACTCCATAGCAAGTAATTTATCGTCTGCAGCCTTGATCCAA
66 GCAGTGGGCAATCCCACCAAGCTGACTCCATAACAAGTAATTTATCGTCTGCAGCCTTGATCCAA
** * *
37141078 ACGACTTGTTTTCTCGGGTTGATTCCAAGAGGAATACCAACTACCAAGATAT
131 ACGACCCGTTTTCTCAGGATGATTCCAAGAGGAATACCAACTACCAAGATAT
*
37141130 TTGAGCTGGAGGCGTCCAACAGATATCCCTCCGAACTGCTTTAACAGGAGTAGCCGAGAAGCAAA
1 TTGAGCTGGAGGCGTCCAACAGATATCCCTCCAAACTGCTTTAACAGGAGTAGCCGAGAAGCAAA
37141195 GCAGTGGGCAATCCCACCAAGCTGACTCCATAACAAGTAATTTATCGTCTGCAGCCTTGATCCAA
66 GCAGTGGGCAATCCCACCAAGCTGACTCCATAACAAGTAATTTATCGTCTGCAGCCTTGATCCAA
*
37141260 ACTACCCGTTTTCTCAGGATGATTCCAAGAGGAATACCAACTACCAAGATAT
131 ACGACCCGTTTTCTCAGGATGATTCCAAGAGGAATACCAACTACCAAGATAT
37141312 TT
1 TT
37141314 AAGGGGGAAC
Statistics
Matches: 177, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
182 177 1.00
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (182 bp):
TTGAGCTGGAGGCGTCCAACAGATATCCCTCCAAACTGCTTTAACAGGAGTAGCCGAGAAGCAAA
GCAGTGGGCAATCCCACCAAGCTGACTCCATAACAAGTAATTTATCGTCTGCAGCCTTGATCCAA
ACGACCCGTTTTCTCAGGATGATTCCAAGAGGAATACCAACTACCAAGATAT
Found at i:37143951 original size:27 final size:27
Alignment explanation
Indices: 37143909--37143960 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
37143899 AAAACTGATA
37143909 TATTTTCCAACACCCA-CATTCTCCACT
1 TATTTTCCAACACCCATC-TTCTCCACT
37143936 TATTTTCCGAAC-CCCATCTTCTCCA
1 TATTTTCC-AACACCCATCTTCTCCA
37143961 ATATGTGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.23, C:0.40, G:0.02, T:0.35
Consensus pattern (27 bp):
TATTTTCCAACACCCATCTTCTCCACT
Found at i:37157687 original size:2 final size:2
Alignment explanation
Indices: 37157682--37157710 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37157672 ATAAACATAA
37157682 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37157711 CCTTCTGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37159281 original size:16 final size:19
Alignment explanation
Indices: 37159233--37159288 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 19
37159223 TTTAGTCATA
37159233 TAATAAATTATTAATATAAT
1 TAATAAATTATTAATAT-AT
37159253 TAATATAATTTATT-AT-T-T
1 TAATA-AA-TTATTAATATAT
37159271 TAATAAATTATTTAATAT
1 TAATAAATTA-TTAATAT
37159289 TTCAATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
16 3 0.10
17 4 0.13
18 8 0.26
19 1 0.03
20 6 0.19
21 4 0.13
22 5 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATAAATTATTAATATAT
Found at i:37159314 original size:13 final size:13
Alignment explanation
Indices: 37159298--37159344 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
37159288 TTTCAATTTT
37159298 ATTTTAATAATAA
1 ATTTTAATAATAA
*
37159311 ATTTTAAAAATAA
1 ATTTTAATAATAA
37159324 TATTTTTAAATAAT-A
1 -A-TTTT-AATAATAA
37159339 ATTTTA
1 ATTTTA
37159345 CATATTATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
12 1 0.03
13 16 0.55
14 2 0.07
15 5 0.17
16 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
ATTTTAATAATAA
Found at i:37159324 original size:16 final size:16
Alignment explanation
Indices: 37159302--37159340 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
37159292 AATTTTATTT
37159302 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
*
37159319 -AATAATATTTTTAAA
1 TAATAATAATTTTAAA
37159334 TAATAAT
1 TAATAAT
37159341 TTTACATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:37170509 original size:11 final size:11
Alignment explanation
Indices: 37170493--37170519 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
37170483 TTGTTATTTG
37170493 TTGTTGCTATT
1 TTGTTGCTATT
37170504 TTGTTGCTATT
1 TTGTTGCTATT
37170515 TTGTT
1 TTGTT
37170520 ATTATATTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.19, T:0.67
Consensus pattern (11 bp):
TTGTTGCTATT
Found at i:37183929 original size:31 final size:31
Alignment explanation
Indices: 37183894--37183956 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
37183884 CAAAACGGTC
37183894 ATTGAACTATTCAAAAGTTTTTATTTAAGTT
1 ATTGAACTATTCAAAAGTTTTTATTTAAGTT
* *
37183925 ATTGAATTATTCCAAAGTTTTTATTTAAGTT
1 ATTGAACTATTCAAAAGTTTTTATTTAAGTT
37183956 A
1 A
37183957 CTATGTTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.49
Consensus pattern (31 bp):
ATTGAACTATTCAAAAGTTTTTATTTAAGTT
Found at i:37184398 original size:28 final size:28
Alignment explanation
Indices: 37184365--37184437 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
37184355 AATTTACCTT
37184365 TAATTTAAATTAGTTTTCTATTGTTAAA
1 TAATTTAAATTAGTTTTCTATTGTTAAA
37184393 TAATTTAAATTAGTTTTCTATTGTTAAA
1 TAATTTAAATTAGTTTTCTATTGTTAAA
* *
37184421 TAAATTAATTTAGTTTT
1 TAATTTAAATTAGTTTT
37184438 TAAACAAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.55
Consensus pattern (28 bp):
TAATTTAAATTAGTTTTCTATTGTTAAA
Found at i:37189666 original size:39 final size:37
Alignment explanation
Indices: 37189596--37189691 Score: 104
Period size: 39 Copynumber: 2.5 Consensus size: 37
37189586 CACACCAGAA
* *
37189596 TGACACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGT
1 TGACACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGT
*
37189635 TGACACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGT
1 TGACACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGT
** *
37189672 TGGTACCCAGTACCTCATCG
1 TGACACCCAGTGCCTCATCG
37189692 AATCTATTCG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
37 19 0.39
38 2 0.04
39 25 0.51
40 3 0.06
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (37 bp):
TGACACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGT
Found at i:37190944 original size:19 final size:19
Alignment explanation
Indices: 37190920--37190958 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37190910 AGTTTTGTTA
37190920 TTCTAT-TTCTATTCTCTTT
1 TTCTATCTTCTATT-TCTTT
*
37190939 TTCTATCTTTTATTTCTTT
1 TTCTATCTTCTATTTCTTT
37190958 T
1 T
37190959 GTTTTATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.10, C:0.18, G:0.00, T:0.72
Consensus pattern (19 bp):
TTCTATCTTCTATTTCTTT
Found at i:37190981 original size:8 final size:8
Alignment explanation
Indices: 37190968--37191006 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
37190958 TGTTTTATAT
37190968 ATATAATA
1 ATATAATA
37190976 ATATAATA
1 ATATAATA
*
37190984 TTATAATA
1 ATATAATA
37190992 ATATAACTA
1 ATATAA-TA
37191001 ATATAA
1 ATATAA
37191007 AACTTATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
8 20 0.71
9 8 0.29
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:37192515 original size:23 final size:23
Alignment explanation
Indices: 37192489--37192532 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
37192479 TTCTTACTAT
37192489 AGTAATTTTCGGGGTATTACAGC
1 AGTAATTTTCGGGGTATTACAGC
* *
37192512 AGTAATTTTCGTGTTATTACA
1 AGTAATTTTCGGGGTATTACA
37192533 ATAACCCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.41
Consensus pattern (23 bp):
AGTAATTTTCGGGGTATTACAGC
Found at i:37192708 original size:43 final size:44
Alignment explanation
Indices: 37192653--37192753 Score: 125
Period size: 43 Copynumber: 2.3 Consensus size: 44
37192643 ATATTGGCAT
*
37192653 ACACAGTGCATCATTAGG-CAAGCCAAAATAATTATACTAACAC
1 ACACAGTACATCATTAGGACAAGCCAAAATAATTATACTAACAC
* ** * *
37192696 ACACAGTACATCA-TCGGACAAGCCGGAGTAATTATACTGACAC
1 ACACAGTACATCATTAGGACAAGCCAAAATAATTATACTAACAC
*
37192739 ACACAATACATCATT
1 ACACAGTACATCATT
37192754 GGATAAATCG
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 3 0.06
43 45 0.92
44 1 0.02
ACGTcount: A:0.42, C:0.25, G:0.13, T:0.21
Consensus pattern (44 bp):
ACACAGTACATCATTAGGACAAGCCAAAATAATTATACTAACAC
Found at i:37195652 original size:30 final size:30
Alignment explanation
Indices: 37195579--37195652 Score: 139
Period size: 30 Copynumber: 2.5 Consensus size: 30
37195569 GCCTAGAGGT
*
37195579 AAAATTGTAATTTCGTGAAACTTTAGGGGC
1 AAAATTGTAATTTTGTGAAACTTTAGGGGC
37195609 AAAATTGTAATTTTGTGAAACTTTAGGGGC
1 AAAATTGTAATTTTGTGAAACTTTAGGGGC
37195639 AAAATTGTAATTTT
1 AAAATTGTAATTTT
37195653 ATCCATAGTG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (30 bp):
AAAATTGTAATTTTGTGAAACTTTAGGGGC
Found at i:37195921 original size:45 final size:45
Alignment explanation
Indices: 37195870--37196130 Score: 357
Period size: 45 Copynumber: 5.8 Consensus size: 45
37195860 AATAGAACGA
* *
37195870 ATATCATTGAATATAAAGGTGGTTGTTATGTGCTGATTCCATCGG
1 ATATCATTGAATATAAAGGTGGTTGCTATGTGCTGATTCCACCGG
* *
37195915 ATATCATTGAATATAAAGGTGGTTGTTATGTGTTGATTCCACCGG
1 ATATCATTGAATATAAAGGTGGTTGCTATGTGCTGATTCCACCGG
*
37195960 ATATCATTGAATATAAATGTGGTTGCTATGTGCTGATTCCACCGG
1 ATATCATTGAATATAAAGGTGGTTGCTATGTGCTGATTCCACCGG
* *
37196005 ATATCATTGAAAATAAAGGTGGTTGCTATGTGCTGACTCCACCGG
1 ATATCATTGAATATAAAGGTGGTTGCTATGTGCTGATTCCACCGG
* * *
37196050 AAATCATT-AATTGTAAAGGTGGTTGCTATGTG-TAGATTCCACCGA
1 ATATCATTGAA-TATAAAGGTGGTTGCTATGTGCT-GATTCCACCGG
* * * *
37196095 ATATAATTGATTATAAGGGCGG-TGCTATGTGCTGAT
1 ATATCATTGAATATAAAGGTGGTTGCTATGTGCTGAT
37196131 CTACTGAGTA
Statistics
Matches: 193, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
44 15 0.08
45 177 0.92
46 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (45 bp):
ATATCATTGAATATAAAGGTGGTTGCTATGTGCTGATTCCACCGG
Found at i:37197905 original size:52 final size:49
Alignment explanation
Indices: 37197826--37197988 Score: 193
Period size: 49 Copynumber: 3.2 Consensus size: 49
37197816 CCATGACAAC
37197826 ATGTGATATGTGATTTCTGTATAAGACCATAGCTGGGCTATGGCATCGGT
1 ATGTGATATGTG-TTTCTGTATAAGACCATAGCTGGGCTATGGCATCGGT
* *
37197876 GCGATGTGATTATGAGTTTC-GTATAAGACCATAGCTGGGTTATGGCATCGGT
1 ---ATGTGA-TATGTGTTTCTGTATAAGACCATAGCTGGGCTATGGCATCGGT
* * * * **
37197928 AAGTGATATGTGATTCTGTGTAAGACCATAGCTGGGCTATGACATTAGT
1 ATGTGATATGTGTTTCTGTATAAGACCATAGCTGGGCTATGGCATCGGT
*
37197977 ATGTGTTATGTG
1 ATGTGATATGTG
37197989 ATTACGTGTA
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
48 8 0.08
49 42 0.44
52 31 0.32
53 10 0.10
54 5 0.05
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (49 bp):
ATGTGATATGTGTTTCTGTATAAGACCATAGCTGGGCTATGGCATCGGT
Found at i:37200141 original size:15 final size:16
Alignment explanation
Indices: 37200114--37200144 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
37200104 ATTTTATTTT
37200114 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
37200130 AATAAT-AATTTTAAA
1 AATAATAAATTTTAAA
37200145 TCATATTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:37200203 original size:15 final size:15
Alignment explanation
Indices: 37200183--37200238 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
37200173 ATTCAATATT
37200183 AATATTTTAATAATA
1 AATATTTTAATAATA
*
37200198 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
37200217 AATATATTAATAATA
1 AATATTTTAATAATA
37200232 AAT-TTTT
1 AATATTTT
37200239 TGTAGTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
14 3 0.09
15 13 0.39
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:37200817 original size:17 final size:18
Alignment explanation
Indices: 37200795--37200829 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
37200785 ATGACATTGA
37200795 TTATTACAAAAT-ATTTT
1 TTATTACAAAATAATTTT
*
37200812 TTATTATAAAATAATTTT
1 TTATTACAAAATAATTTT
37200830 CGATTGTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATTACAAAATAATTTT
Found at i:37201045 original size:32 final size:33
Alignment explanation
Indices: 37201007--37201078 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
37200997 AACTTTTATG
* *
37201007 AAATATTTT-CAGGAAATTTAT-CAAACAACAGA
1 AAATATTTTACA-CAAATTCATCCAAACAACAGA
* *
37201039 AAATATTTTACACAAATTCATCCAAACACCATA
1 AAATATTTTACACAAATTCATCCAAACAACAGA
37201072 AAATATT
1 AAATATT
37201079 AACTTTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 16 0.47
33 18 0.53
ACGTcount: A:0.50, C:0.17, G:0.04, T:0.29
Consensus pattern (33 bp):
AAATATTTTACACAAATTCATCCAAACAACAGA
Found at i:37202891 original size:32 final size:31
Alignment explanation
Indices: 37202855--37202935 Score: 108
Period size: 32 Copynumber: 2.6 Consensus size: 31
37202845 AGTATATATT
* * *
37202855 TTTTTTGACAATTTTAGGTACCAACTATGTA
1 TTTTTGGACAAGTTTAGGTACCAACTAGGTA
* *
37202886 CTTTTTGGACAAGTTCAAGTACCAACTAGGTA
1 -TTTTTGGACAAGTTTAGGTACCAACTAGGTA
37202918 TTTTTGGACAAGTTTAGG
1 TTTTTGGACAAGTTTAGG
37202936 GGGCAAGCTA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 16 0.38
32 26 0.62
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (31 bp):
TTTTTGGACAAGTTTAGGTACCAACTAGGTA
Found at i:37205338 original size:64 final size:64
Alignment explanation
Indices: 37205269--37205390 Score: 172
Period size: 64 Copynumber: 1.9 Consensus size: 64
37205259 TGAGCCATAT
* * * * * * *
37205269 CAGGACGCTTATAAAGAGCTGCGGTATGTCCGTAATATATGCAAGATTAATACCGATCATATAA
1 CAGGACGCTCACAAAGAGCTGCGGTATATCCGCAACACATGCAAGATCAATACCGATCATATAA
*
37205333 CAGGACGCTCACAAAGAGCTGTGGTATATCCGCAACACATGCAAGATCAATACCGATC
1 CAGGACGCTCACAAAGAGCTGCGGTATATCCGCAACACATGCAAGATCAATACCGATC
37205391 GGGATGCTCG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
64 50 1.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.22
Consensus pattern (64 bp):
CAGGACGCTCACAAAGAGCTGCGGTATATCCGCAACACATGCAAGATCAATACCGATCATATAA
Found at i:37207082 original size:22 final size:22
Alignment explanation
Indices: 37207054--37207096 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
37207044 ATATGATAAT
*
37207054 AAAATTACATTTTAATATTAAA
1 AAAATTACAATTTAATATTAAA
* *
37207076 AAAATTATAATTTAATTTTAA
1 AAAATTACAATTTAATATTAA
37207097 CTCCTGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AAAATTACAATTTAATATTAAA
Found at i:37208423 original size:28 final size:27
Alignment explanation
Indices: 37208353--37208425 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 27
37208343 AAAATATATT
*
37208353 TTTTAAATTTCATACTTTTT--AAATAA
1 TTTTAAATTT-ATAATTTTTAAAAATAA
*
37208379 TTTTAATGATTTTTAATTTTTAAAAATAA
1 TTTTAA--ATTTATAATTTTTAAAAATAA
37208408 TTTTGAAATTTATAATTT
1 TTTT-AAATTTATAATTT
37208426 AAAAAAACTA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
26 6 0.15
27 7 0.18
28 14 0.36
29 10 0.26
30 2 0.05
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (27 bp):
TTTTAAATTTATAATTTTTAAAAATAA
Found at i:37208431 original size:28 final size:28
Alignment explanation
Indices: 37208373--37208438 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
37208363 CATACTTTTT
* **
37208373 AAATAATTTTAATGATTTTTAATTTTTAA
1 AAATAATTTTAA-GATTTATAATTTAAAA
37208402 AAATAATTTTGAA-ATTTATAATTTAAAA
1 AAATAATTTT-AAGATTTATAATTTAAAA
37208430 AAACTAATT
1 AAA-TAATT
37208439 AAATAATGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 15 0.47
29 15 0.47
30 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (28 bp):
AAATAATTTTAAGATTTATAATTTAAAA
Found at i:37214406 original size:22 final size:23
Alignment explanation
Indices: 37214379--37214423 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
37214369 AGGTATCTAC
37214379 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
37214401 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
37214424 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:37214427 original size:17 final size:17
Alignment explanation
Indices: 37214405--37214457 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 17
37214395 ATTACAAAAT
37214405 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
37214422 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
* *
37214441 CATATCCTCGAAGATTA
1 CATATCTTCTAAGATTA
37214458 TGTTTCCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 14 0.47
18 1 0.03
19 15 0.50
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:37214428 original size:22 final size:22
Alignment explanation
Indices: 37214376--37214433 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
37214366 AAAAGGTATC
*
37214376 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
37214397 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
37214420 TACATATCATATCT
1 TACAAATCATATCT
37214434 AAGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:37214436 original size:19 final size:20
Alignment explanation
Indices: 37214389--37214446 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
37214379 AAATCAAATC
*
37214389 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
37214412 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
37214431 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
37214447 CTCGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:37216976 original size:46 final size:46
Alignment explanation
Indices: 37216918--37217016 Score: 171
Period size: 46 Copynumber: 2.2 Consensus size: 46
37216908 AGTGTTATTG
*
37216918 ATCAGTGATAGCTTCGGCTACATAATAGTGGTAGCTTCGGCTACAT
1 ATCAGTGATAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACAT
* *
37216964 CTCAGTGGTAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGATAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACAT
37217010 ATCAGTG
1 ATCAGTG
37217017 TTGCACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (46 bp):
ATCAGTGATAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACAT
Found at i:37217015 original size:23 final size:23
Alignment explanation
Indices: 37216918--37217016 Score: 155
Period size: 23 Copynumber: 4.3 Consensus size: 23
37216908 AGTGTTATTG
*
37216918 ATCAGTGATAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
37216941 AAT-AGTGGTAGCTTCGGCTACAT
1 -ATCAGTGGTAGCTTCGGCTACAT
*
37216964 CTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
37216987 AACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
37217010 ATCAGTG
1 ATCAGTG
37217017 TTGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
22 1 0.01
23 66 0.96
24 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:37224438 original size:46 final size:46
Alignment explanation
Indices: 37224380--37224478 Score: 171
Period size: 46 Copynumber: 2.2 Consensus size: 46
37224370 AGTGTTATTG
*
37224380 ATCAGTGATAGCTTCGGCTACATAATAGTGGTAGCTTCGGCTACAT
1 ATCAGTGATAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACAT
* *
37224426 CTCAGTGGTAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGATAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACAT
37224472 ATCAGTG
1 ATCAGTG
37224479 TTGCACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (46 bp):
ATCAGTGATAGCTTCGGCTACATAACAGTGGTAGCTTCGGCTACAT
Found at i:37224477 original size:23 final size:23
Alignment explanation
Indices: 37224380--37224478 Score: 155
Period size: 23 Copynumber: 4.3 Consensus size: 23
37224370 AGTGTTATTG
*
37224380 ATCAGTGATAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
37224403 AAT-AGTGGTAGCTTCGGCTACAT
1 -ATCAGTGGTAGCTTCGGCTACAT
*
37224426 CTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
37224449 AACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
37224472 ATCAGTG
1 ATCAGTG
37224479 TTGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
22 1 0.01
23 66 0.96
24 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:37229496 original size:22 final size:23
Alignment explanation
Indices: 37229469--37229513 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
37229459 AGGTATCTAC
37229469 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
37229491 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
37229514 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:37229517 original size:17 final size:17
Alignment explanation
Indices: 37229495--37229546 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 17
37229485 ATTACAAAAT
37229495 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
37229512 CATATCATATCT-AGATTG
1 CATATC-T-TCTAAGATTA
* *
37229530 CATATCCTCGAAGATTA
1 CATATCTTCTAAGATTA
37229547 TATTTCCATA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
16 2 0.07
17 11 0.39
18 12 0.43
19 3 0.11
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.37
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:37229518 original size:22 final size:22
Alignment explanation
Indices: 37229466--37229523 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
37229456 AAAAGGTATC
*
37229466 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
37229487 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
37229510 TACATATCATATCT
1 TACAAATCATATCT
37229524 AGATTGCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:37230389 original size:21 final size:22
Alignment explanation
Indices: 37230358--37230403 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
37230348 AACCCATAAT
*
37230358 CAAATGCCTTAGCC-ATTCTAAC
1 CAAATGCCTTAACCGATT-TAAC
37230380 CAAAT-CCTTAACCGATTTAAC
1 CAAATGCCTTAACCGATTTAAC
37230401 CAA
1 CAA
37230404 TATAACTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.37, C:0.30, G:0.07, T:0.26
Consensus pattern (22 bp):
CAAATGCCTTAACCGATTTAAC
Found at i:37233404 original size:24 final size:25
Alignment explanation
Indices: 37233369--37233454 Score: 81
Period size: 24 Copynumber: 3.6 Consensus size: 25
37233359 CCAGGCTGTA
*
37233369 TAAT-AAGTAGCTCATAAGAGCC-T
1 TAATCAAGAAGCTCATAAGAGCCAT
** *
37233392 TAATCAAGAAGCTCATTCGAGCCAA
1 TAATCAAGAAGCTCATAAGAGCCAT
* *
37233417 TAA-CGAGTAGCTTCA-AAGAGCCAT
1 TAATCAAGAAGC-TCATAAGAGCCAT
37233441 TAATCAAGAAGCTC
1 TAATCAAGAAGCTC
37233455 CGAATAGCCA
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
23 4 0.08
24 32 0.67
25 12 0.25
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.22
Consensus pattern (25 bp):
TAATCAAGAAGCTCATAAGAGCCAT
Found at i:37233649 original size:234 final size:234
Alignment explanation
Indices: 37233232--37233705 Score: 738
Period size: 234 Copynumber: 2.0 Consensus size: 234
37233222 TTTATTTGAA
* * *
37233232 ATATCGATGGACACACTGGTAGTACACACGAAGTGTACTATTCTATAATCCGTCAATTTATATTC
1 ATATTGATGGACACACGGGTAGTACACACGAAGTGTACTATTCTATAATCCGTCAATTCATATTC
** * * *
37233297 GGGAGTGCTCATTAGAGCACATAACCTAGAAGCTCATATGAGCCATGTAATGGGAAGCTTATCCA
66 GGGAGAACTCATTAGAGCACATAACCGAGAAGCTCATATGAGCCATATAACGGGAAGCTTATCCA
* *
37233362 GGCTGTATAATAAGTAGCTCATAAGAGCCTTAATCAAGAAGCTCATTCGAGCCAATAAC-GAGTA
131 GGCTGTATAATAAGAAGCTCATAAGAGCCTTAATCAAGAAGCTCATACGAGCCAATAACAG-GTA
37233426 GCT-TCAAAGAGCCATTAATCAAGAAGCTCCGAATAGCCAT
195 GCTCT-AAAGAGCCATTAATCAAGAAGCTCCGAATAGCCAT
37233466 ATATTGATGGACACACGGGTAGTACACACGAAGTGTACTATTCTATAATCCGTCAATTCATATTC
1 ATATTGATGGACACACGGGTAGTACACACGAAGTGTACTATTCTATAATCCGTCAATTCATATTC
* * * *
37233531 GGGAGAACTCATTAGAGCACATAATCGGGAAGCTCATGTGAGCCATATAACGGGAAGCTTATCCG
66 GGGAGAACTCATTAGAGCACATAACCGAGAAGCTCATATGAGCCATATAACGGGAAGCTTATCCA
*
37233596 GGCTGTATAATAGGAAGCTCATAAGAGCCTTAATC-AGAAAGCTCATACGAGCCAATAACAGGTA
131 GGCTGTATAATAAGAAGCTCATAAGAGCCTTAATCAAG-AAGCTCATACGAGCCAATAACAGGTA
* * *
37233660 GCTCTGAAGAGCCATTAATCGAGAAGCTTCGAATAGCCAT
195 GCTCTAAAGAGCCATTAATCAAGAAGCTCCGAATAGCCAT
37233700 ATATTG
1 ATATTG
37233706 GGAAGTTTAA
Statistics
Matches: 219, Mismatches: 18, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
233 2 0.01
234 215 0.98
235 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (234 bp):
ATATTGATGGACACACGGGTAGTACACACGAAGTGTACTATTCTATAATCCGTCAATTCATATTC
GGGAGAACTCATTAGAGCACATAACCGAGAAGCTCATATGAGCCATATAACGGGAAGCTTATCCA
GGCTGTATAATAAGAAGCTCATAAGAGCCTTAATCAAGAAGCTCATACGAGCCAATAACAGGTAG
CTCTAAAGAGCCATTAATCAAGAAGCTCCGAATAGCCAT
Found at i:37233775 original size:26 final size:26
Alignment explanation
Indices: 37233741--37233798 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
37233731 AGCTCTAGAA
37233741 AGCCATTAATCAGGAAGCTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* ** *
37233767 AGCCTTTAATTGGGAAGCTCACGAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
*
37233793 ATCCAT
1 AGCCAT
37233799 ATATCGGGAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (26 bp):
AGCCATTAATCAGGAAGCTCACAAAG
Found at i:37236117 original size:28 final size:28
Alignment explanation
Indices: 37236085--37236143 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
37236075 GCCTGACCTT
* * *
37236085 ATACAACAATAGTGTGGGCTTTAGCCCA
1 ATACAACAACAGTGTGAGCCTTAGCCCA
**
37236113 ATACAGTAACAGTGTGAGCCTTAGCCCA
1 ATACAACAACAGTGTGAGCCTTAGCCCA
37236141 ATA
1 ATA
37236144 TAGAAACATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (28 bp):
ATACAACAACAGTGTGAGCCTTAGCCCA
Found at i:37236151 original size:28 final size:28
Alignment explanation
Indices: 37236095--37236151 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
37236085 ATACAACAAT
* * *
37236095 AGTGTGGGCTTTAGCCCAATACAGTAAC
1 AGTGTGAGCCTTAGCCCAATACAGAAAC
*
37236123 AGTGTGAGCCTTAGCCCAATATAGAAAC
1 AGTGTGAGCCTTAGCCCAATACAGAAAC
37236151 A
1 A
37236152 TTACAATGCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (28 bp):
AGTGTGAGCCTTAGCCCAATACAGAAAC
Found at i:37236518 original size:27 final size:28
Alignment explanation
Indices: 37236485--37236817 Score: 321
Period size: 27 Copynumber: 12.3 Consensus size: 28
37236475 AGGTATAACA
*
37236485 GTCATTTTACCCTAT-GAAGGTATTTCG
1 GTCATTTTACCCTATCGAGGGTATTTCG
* * *
37236512 GTTATTTTACCCT-TCGGGGGTATTTTG
1 GTCATTTTACCCTATCGAGGGTATTTCG
* *
37236539 ATCATTTTACCCT-TCGGGGGTATTTCG
1 GTCATTTTACCCTATCGAGGGTATTTCG
* *
37236566 GTCATATTACCCT-TCGAGGGTATTTCA
1 GTCATTTTACCCTATCGAGGGTATTTCG
* *
37236593 GTCATTTTACCC-ATCGGGGGTATTTCA
1 GTCATTTTACCCTATCGAGGGTATTTCG
* * ** *
37236620 GTCATTTTATCC-ATCAAATGTATTTTG
1 GTCATTTTACCCTATCGAGGGTATTTCG
* * *
37236647 ATCTTTTTA-CCTATCGAGGGTATTTCA
1 GTCATTTTACCCTATCGAGGGTATTTCG
* *
37236674 GTCATTTTACCCT-CCGAGGGTATTTCA
1 GTCATTTTACCCTATCGAGGGTATTTCG
*
37236701 GTCATTTTACCC-ATCGAGGGTATTTCA
1 GTCATTTTACCCTATCGAGGGTATTTCG
* *
37236728 GTCTTTTTACCC-ATCGAAGGTATTTCG
1 GTCATTTTACCCTATCGAGGGTATTTCG
37236755 GTCATTTTACCCT-TCGAAGGGTATTTCG
1 GTCATTTTACCCTATCG-AGGGTATTTCG
* * * *
37236783 ATCATTTTA-CTTATCAAGGGTATTTTG
1 GTCATTTTACCCTATCGAGGGTATTTCG
*
37236810 GTAATTTT
1 GTCATTTT
37236818 TCCATGAATC
Statistics
Matches: 256, Mismatches: 42, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.01
27 230 0.90
28 23 0.09
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (28 bp):
GTCATTTTACCCTATCGAGGGTATTTCG
Found at i:37236600 original size:81 final size:82
Alignment explanation
Indices: 37236485--37236817 Score: 354
Period size: 81 Copynumber: 4.1 Consensus size: 82
37236475 AGGTATAACA
* * * *
37236485 GTCATTTTACCCTAT-GAAGGTATTTCGGTTATTTTACCCTTCGGGGGTATTT-TGATCATTTTA
1 GTCATTTTACCCTATCGAAGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAG-TCATTTTA
* *
37236548 CCCTTCGGGGGTATTTCG
65 CCCATCGAGGGTATTTCG
* * * * *
37236566 GTCATATTACCCT-TCGAGGGTATTTCAGTCATTTTACCCATCGGGGGTATTTCAGTCATTTTAT
1 GTCATTTTACCCTATCGAAGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTAC
* ** *
37236630 CCATCAAATGTATTTTG
66 CCATCGAGGGTATTTCG
* * * *
37236647 ATCTTTTTA-CCTATCGAGGGTATTTCAGTCATTTTACCCTCCGAGGGTATTTCAGTCATTTTAC
1 GTCATTTTACCCTATCGAAGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTAC
*
37236711 CCATCGAGGGTATTTCA
66 CCATCGAGGGTATTTCG
* *
37236728 GTCTTTTTACCC-ATCGAAGGTATTTCGGTCATTTTACCCTTCGAAGGGTATTTC-GATCATTTT
1 GTCATTTTACCCTATCGAAGGTATTTCAGTCATTTTACCCTTCG-AGGGTATTTCAG-TCATTTT
** * *
37236791 ACTTATCAAGGGTATTTTG
64 ACCCATCGAGGGTATTTCG
*
37236810 GTAATTTT
1 GTCATTTT
37236818 TCCATGAATC
Statistics
Matches: 210, Mismatches: 36, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
80 4 0.02
81 166 0.79
82 40 0.19
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (82 bp):
GTCATTTTACCCTATCGAAGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTAC
CCATCGAGGGTATTTCG
Found at i:37237532 original size:23 final size:20
Alignment explanation
Indices: 37237485--37237524 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
37237475 ACCTCACGGT
37237485 CCAATATCTGCACTGGCTCC
1 CCAATATCTGCACTGGCTCC
37237505 CCAATATCTGCACTGGCTCC
1 CCAATATCTGCACTGGCTCC
37237525 TCCTCAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.40, G:0.15, T:0.25
Consensus pattern (20 bp):
CCAATATCTGCACTGGCTCC
Found at i:37242876 original size:28 final size:27
Alignment explanation
Indices: 37242839--37242961 Score: 113
Period size: 28 Copynumber: 4.4 Consensus size: 27
37242829 ATACAACATG
* * *
37242839 CAGTAGCAGTCTGGGCTTGAGCCCTATA
1 CAGTAACAGTATGGGCTT-AGCCCAATA
* *
37242867 CA-TCAACAGTGTAGGCCTTAGCCCAATA
1 CAGT-AACAGTAT-GGGCTTAGCCCAATA
*
37242895 CAGTAACAGTATGGGCCTTATCCCAATA
1 CAGTAACAGTATGGG-CTTAGCCCAATA
* *
37242923 CAGTAACAGTGTAGGCATTAGCCCAATA
1 CAGTAACAGTATGGGC-TTAGCCCAATA
*
37242951 CAGAAACAGTA
1 CAGTAACAGTA
37242962 CAATGCAGTA
Statistics
Matches: 78, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
27 4 0.05
28 68 0.87
29 6 0.08
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (27 bp):
CAGTAACAGTATGGGCTTAGCCCAATA
Found at i:37243321 original size:27 final size:27
Alignment explanation
Indices: 37243291--37243621 Score: 209
Period size: 27 Copynumber: 12.3 Consensus size: 27
37243281 GGTATAACAG
*
37243291 TCATTTTACCCTAT-GGGGTTATTTCAA
1 TCATTTTACCCT-TCGGGGGTATTTCAA
*
37243318 TCATTTTACCCTTCGGGGGTATTTCGA
1 TCATTTTACCCTTCGGGGGTATTTCAA
* * * **
37243345 TCATTTTACCCATCGAGGATATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTCAA
* * * **
37243372 TTATTTTACCCATCGAGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTCAA
* * ** *
37243399 TCATTTTATCCATCAAGGGTA-TTCGA
1 TCATTTTACCCTTCGGGGGTATTTCAA
* ** * *
37243425 TCTTTTTACCAATCGAGGGTATTTCGA
1 TCATTTTACCCTTCGGGGGTATTTCAA
**
37243452 TCATTTTACCCTTCGGGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTCAA
* * * *
37243479 TCATTTTATCCATCGTGGGTATTTCAG
1 TCATTTTACCCTTCGGGGGTATTTCAA
* * * **
37243506 TTATTTTATCCATCAAGGGTATTTCAA
1 TCATTTTACCCTTCGGGGGTATTTCAA
* * * **
37243533 TCTTTTTACCCATCGAGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTCAA
* * **
37243560 TCATTTTACACTTCAGAGGGTATTTTGA
1 TCATTTTACCCTTC-GGGGGTATTTCAA
* * *
37243588 TCATTTTA-CCTATTGAGGGTATTTCGA
1 TCATTTTACCCT-TCGGGGGTATTTCAA
37243615 TCATTTT
1 TCATTTT
37243622 TCCACGAATC
Statistics
Matches: 257, Mismatches: 43, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 22 0.09
27 215 0.84
28 20 0.08
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTTCGGGGGTATTTCAA
Found at i:37243349 original size:54 final size:53
Alignment explanation
Indices: 37243291--37243621 Score: 326
Period size: 54 Copynumber: 6.1 Consensus size: 53
37243281 GGTATAACAG
* * *
37243291 TCATTTTACCCTAT-GGGGTTATTTCAATCATTTTACCCTTCGGGGGTATTTCGA
1 TCATTTTACCC-ATCGGGG-TATTTCGATCATTTTACCCATCGAGGGTATTTCGA
* * * *
37243345 TCATTTTACCCATCGAGGATATTTCGGTTATTTTACCCATCGAGGGTATTTCGG
1 TCATTTTACCCATCG-GGGTATTTCGATCATTTTACCCATCGAGGGTATTTCGA
* * * *
37243399 TCATTTTATCCATCAAGGGTA-TTCGATCTTTTTACCAATCGAGGGTATTTCGA
1 TCATTTTACCCATC-GGGGTATTTCGATCATTTTACCCATCGAGGGTATTTCGA
* * * *
37243452 TCATTTTACCCTTCGGGGGTATTTCGGTCATTTTATCCATCGTGGGTATTTC-A
1 TCATTTTACCCATC-GGGGTATTTCGATCATTTTACCCATCGAGGGTATTTCGA
* * * * * *
37243505 GTTATTTTATCCATCAAGGGTATTTCAATCTTTTTACCCATCGAGGGTATTTCGG
1 -TCATTTTACCCATC-GGGGTATTTCGATCATTTTACCCATCGAGGGTATTTCGA
* * * * *
37243560 TCATTTTACACTTCAGAGGGTATTTTGATCATTTTACCTATTGAGGGTATTTCGA
1 TCATTTTACCCATC-G-GGGTATTTCGATCATTTTACCCATCGAGGGTATTTCGA
37243615 TCATTTT
1 TCATTTT
37243622 TCCACGAATC
Statistics
Matches: 224, Mismatches: 46, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
53 47 0.21
54 136 0.61
55 41 0.18
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (53 bp):
TCATTTTACCCATCGGGGTATTTCGATCATTTTACCCATCGAGGGTATTTCGA
Found at i:37243475 original size:107 final size:108
Alignment explanation
Indices: 37243310--37243625 Score: 420
Period size: 107 Copynumber: 2.9 Consensus size: 108
37243300 CCTATGGGGT
* ** * * * *
37243310 TATTTCAATCATTTTACCCTTCGGGGGTATTTCGATCATTTTACCCATCGAGGATATTTCGGTTA
1 TATTTCAATCTTTTTACCAATCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCA
37243375 TTTTACCCATCGAGGGTATTTCGGTCATTTTATCCATCAAGGG
66 TTTTACCCATCGAGGGTATTTCGGTCATTTTATCCATCAAGGG
* *
37243418 TA-TTCGATCTTTTTACCAATCGAGGGTATTTCGATCATTTTACCCTTCGGGGGTATTTCGGTCA
1 TATTTCAATCTTTTTACCAATCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCA
* * * *
37243482 TTTTATCCATCGTGGGTATTTCAGTTATTTTATCCATCAAGGG
66 TTTTACCCATCGAGGGTATTTCGGTCATTTTATCCATCAAGGG
* * * * *
37243525 TATTTCAATCTTTTTACCCATCGAGGGTATTTCGGTCATTTTACACTTCAGAGGGTATTTTGATC
1 TATTTCAATCTTTTTACCAATCGAGGGTATTTCGATCATTTTACCCTTC-GAGGGTATTTCGGTC
* * *
37243590 ATTTTACCTATTGAGGGTATTTCGATCATTTT-TCCA
65 ATTTTACCCATCGAGGGTATTTCGGTCATTTTATCCA
37243626 CGAATCACAA
Statistics
Matches: 179, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
107 94 0.53
108 48 0.27
109 37 0.21
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (108 bp):
TATTTCAATCTTTTTACCAATCGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCA
TTTTACCCATCGAGGGTATTTCGGTCATTTTATCCATCAAGGG
Found at i:37243540 original size:134 final size:136
Alignment explanation
Indices: 37243310--37243625 Score: 408
Period size: 134 Copynumber: 2.3 Consensus size: 136
37243300 CCTATGGGGT
* * *
37243310 TATTTCAATCATTTTACCCTTCGGGGGTATTTCGATCATTTTACCCATCGAGGATATTTCGGTTA
1 TATTTCGATCATTTTACCCTTCGGGGGTATTTCGATCATTTTATCCATCGAGGATATTTCAGTTA
* ** * *
37243375 TTTTACCCATCGAGGGTATTTCGGTCATTTTATCCATCAAGGGTA-TTCGATCTTTTTAC-CAAT
66 TTTTACCCATCAAGGGTATTTCAATCATTTTACCCATCAAGGGTATTTCGATCATTTTACAC-AT
37243438 C-GAGGG
130 CAGAGGG
* * *
37243444 TATTTCGATCATTTTACCCTTCGGGGGTATTTCGGTCATTTTATCCATCGTGGGTATTTCAGTTA
1 TATTTCGATCATTTTACCCTTCGGGGGTATTTCGATCATTTTATCCATCGAGGATATTTCAGTTA
* * * * *
37243509 TTTTATCCATCAAGGGTATTTCAATCTTTTTACCCATCGAGGGTATTTCGGTCATTTTACACTTC
66 TTTTACCCATCAAGGGTATTTCAATCATTTTACCCATCAAGGGTATTTCGATCATTTTACACATC
37243574 AGAGGG
131 AGAGGG
* * *
37243580 TATTTTGATCATTTTA-CCTATTGAGGGTATTTCGATCATTTT-TCCA
1 TATTTCGATCATTTTACCCT-TCGGGGGTATTTCGATCATTTTATCCA
37243626 CGAATCACAA
Statistics
Matches: 158, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
134 97 0.61
135 21 0.13
136 40 0.25
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (136 bp):
TATTTCGATCATTTTACCCTTCGGGGGTATTTCGATCATTTTATCCATCGAGGATATTTCAGTTA
TTTTACCCATCAAGGGTATTTCAATCATTTTACCCATCAAGGGTATTTCGATCATTTTACACATC
AGAGGG
Found at i:37246832 original size:3 final size:3
Alignment explanation
Indices: 37246824--37246874 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
37246814 AGCAAGTTGG
37246824 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37246872 AAT
1 AAT
37246875 TGCTAATTAC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37249536 original size:15 final size:15
Alignment explanation
Indices: 37249516--37249546 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
37249506 ACAAAAACAG
37249516 TACATCCGCCTTTAC
1 TACATCCGCCTTTAC
37249531 TACATCCGCCTTTAC
1 TACATCCGCCTTTAC
37249546 T
1 T
37249547 GTATCGGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.39, G:0.06, T:0.35
Consensus pattern (15 bp):
TACATCCGCCTTTAC
Found at i:37258399 original size:68 final size:64
Alignment explanation
Indices: 37258277--37258400 Score: 160
Period size: 68 Copynumber: 1.9 Consensus size: 64
37258267 NNNNNNNNNN
* * *
37258277 AATTTTATATACATATGTGATTCAAATATAGGTTATAAAGTTCTTGAGCTGAATTTAATTTATG
1 AATTTTACATACATATGTGATTCAAATATAGGTTACAAAGTTCTTGAACTGAATTTAATTTATG
*
37258341 AATTTTACATACATATGTGTATGGTTCGAATATAGGTTACAAA-TTCTTTGAACTGAATTT
1 AATTTTACATACATATGTG-A---TTCAAATATAGGTTACAAAGTTC-TTGAACTGAATTT
37258401 TAATGTTGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
64 18 0.35
65 1 0.02
67 3 0.06
68 29 0.57
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.43
Consensus pattern (64 bp):
AATTTTACATACATATGTGATTCAAATATAGGTTACAAAGTTCTTGAACTGAATTTAATTTATG
Found at i:37258490 original size:41 final size:42
Alignment explanation
Indices: 37258445--37258561 Score: 125
Period size: 41 Copynumber: 2.8 Consensus size: 42
37258435 ATCTGAGATT
*
37258445 TTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTG-AAT-TAA
1 TTCAGGCTTTATGCCTAGCAGGCTTGATGCCGGTGAAATGT-A
* * *
37258486 TTCAGACTTTATGTCTAGCAGGCTTTG-TACCGGTGAAATGTA
1 TTCAGGCTTTATGCCTAGCAGGC-TTGATGCCGGTGAAATGTA
* * *
37258528 -TCAGGCTTTGTGCCTAGTAGGCTTTATGCCGGTG
1 TTCAGGCTTTATGCCTAGCAGGCTTGATGCCGGTG
37258562 TTTTATACAA
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
40 2 0.03
41 52 0.84
42 7 0.11
43 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (42 bp):
TTCAGGCTTTATGCCTAGCAGGCTTGATGCCGGTGAAATGTA
Found at i:37269167 original size:29 final size:31
Alignment explanation
Indices: 37269134--37269255 Score: 110
Period size: 31 Copynumber: 4.0 Consensus size: 31
37269124 ATTTTACGAT
37269134 ATTTTTGAAAATTTTAATTAA-CC-CTCAAA
1 ATTTTTGAAAATTTTAATTAAGCCTCTCAAA
* * * *
37269163 CTTTTAGAAAATTTTTATTAAGCCTTTCAAA
1 ATTTTTGAAAATTTTAATTAAGCCTCTCAAA
*
37269194 ATTTTT-AAAGATTTTAATTATG-CTCTTCCAAA
1 ATTTTTGAAA-ATTTTAATTAAGCCTC-T-CAAA
* * *
37269226 ATTTTTGTAAATTTTTATTAAGTCTC-CAAA
1 ATTTTTGAAAATTTTAATTAAGCCTCTCAAA
37269256 TAATTTAAAA
Statistics
Matches: 74, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
29 18 0.24
30 11 0.15
31 20 0.27
32 20 0.27
33 5 0.07
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (31 bp):
ATTTTTGAAAATTTTAATTAAGCCTCTCAAA
Found at i:37269226 original size:32 final size:32
Alignment explanation
Indices: 37269134--37269255 Score: 105
Period size: 32 Copynumber: 4.0 Consensus size: 32
37269124 ATTTTACGAT
*
37269134 ATTTTT-GAAAATTTTAATTAA-CCCT-C-AA
1 ATTTTTAGAAAATTTTAATTAAGCCTTCCAAA
* * *
37269162 ACTTTTAGAAAATTTTTATTAAGCCTTTCAAA
1 ATTTTTAGAAAATTTTAATTAAGCCTTCCAAA
* *
37269194 ATTTTTA-AAGATTTTAATTATGCTCTTCCAAA
1 ATTTTTAGAAAATTTTAATTAAGC-CTTCCAAA
* * *
37269226 ATTTTT-GTAAATTTTTATTAAGTC-TCCAAA
1 ATTTTTAGAAAATTTTAATTAAGCCTTCCAAA
37269256 TAATTTAAAA
Statistics
Matches: 75, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
28 5 0.07
29 14 0.19
30 9 0.12
31 15 0.20
32 32 0.43
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (32 bp):
ATTTTTAGAAAATTTTAATTAAGCCTTCCAAA
Found at i:37270629 original size:6 final size:6
Alignment explanation
Indices: 37270582--37270610 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
37270572 GCCCGTTTTT
37270582 AATTAA AATTAA AATTAA AATTAA AATTA
1 AATTAA AATTAA AATTAA AATTAA AATTA
37270611 TTTTTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AATTAA
Found at i:37270648 original size:22 final size:23
Alignment explanation
Indices: 37270595--37270650 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
37270585 TAAAATTAAA
* * *
37270595 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
37270618 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
37270640 ATTAAAATTAA
1 ATTAAAATTAA
37270651 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:37270663 original size:16 final size:16
Alignment explanation
Indices: 37270626--37270665 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
37270616 TTAATAAAAT
* *
37270626 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
37270642 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
37270658 TAAAATTA
1 TAAAATTA
37270666 CCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:37270770 original size:68 final size:68
Alignment explanation
Indices: 37270654--37270863 Score: 361
Period size: 68 Copynumber: 3.1 Consensus size: 68
37270644 AAATTAATTG
* *
37270654 TTAGTAAAATTACCAAATTATTAATTG--TTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
37270717 TGA
66 TGA
*
37270720 TTAGTAAATTTATCAAATTGTTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
37270785 TGA
66 TGA
* *
37270788 TTAGTAAATTTATCAAATTATTAATTGTACTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
37270853 TGA
66 TGA
37270856 TTAGTAAA
1 TTAGTAAA
37270864 ACAAACTTGA
Statistics
Matches: 136, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
66 24 0.18
68 112 0.82
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.45
Consensus pattern (68 bp):
TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
TGA
Found at i:37270771 original size:9 final size:9
Alignment explanation
Indices: 37270740--37270765 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
37270730 TATCAAATTG
37270740 TTAATTGTA
1 TTAATTGTA
37270749 TTAATTGTA
1 TTAATTGTA
37270758 TTAATTGT
1 TTAATTGT
37270766 TGTAATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58
Consensus pattern (9 bp):
TTAATTGTA
Found at i:37270977 original size:23 final size:24
Alignment explanation
Indices: 37270930--37270975 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
37270920 AAATAAACTT
37270930 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAACTATTATATTTTA
37270954 AAAATAAAAAA-TATATATATTT
1 AAAATAAAAAACTAT-TATATTT
37270976 AATATTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
AAAATAAAAAACTATTATATTTTA
Found at i:37272281 original size:82 final size:78
Alignment explanation
Indices: 37272122--37272309 Score: 313
Period size: 82 Copynumber: 2.4 Consensus size: 78
37272112 GGATCTAAGC
37272122 GATAATTAGTTCAATACCTAATATTAATCGACACTTTCTCTGAAGTCTTCTGTCATTATACCATA
1 GATAATTAGTTCAATACCTAATATTAATCGACACTTTCTCTGAAGTCTTCTGTCATTATACCATA
37272187 GACTAGGTTGACA
66 GACTAGGTTGACA
* *
37272200 GATAATTAGTTCAATACCTAATATTAATCGATACTTTCTTCATCTGAAGTCTTTTGTCATTATAC
1 GATAATTAGTTCAATACCTAATATTAATCGACAC--T-TTC-TCTGAAGTCTTCTGTCATTATAC
*
37272265 CGTAGACTAGGTTGACA
62 CATAGACTAGGTTGACA
37272282 GATAATTAGTTCAATACCTAATATTAAT
1 GATAATTAGTTCAATACCTAATATTAAT
37272310 GTAACATCCT
Statistics
Matches: 103, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
78 33 0.32
80 1 0.01
81 3 0.03
82 66 0.64
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (78 bp):
GATAATTAGTTCAATACCTAATATTAATCGACACTTTCTCTGAAGTCTTCTGTCATTATACCATA
GACTAGGTTGACA
Found at i:37272816 original size:14 final size:14
Alignment explanation
Indices: 37272797--37272823 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37272787 AAGATGAAGA
37272797 AAAAAAAAAAGAGG
1 AAAAAAAAAAGAGG
37272811 AAAAAAAAAAGAG
1 AAAAAAAAAAGAG
37272824 AGGATCATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAGAGG
Found at i:37272817 original size:16 final size:16
Alignment explanation
Indices: 37272796--37272827 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37272786 AAAGATGAAG
37272796 AAAAAAAAAAAGAGGA
1 AAAAAAAAAAAGAGGA
*
37272812 AAAAAAAAAGAGAGGA
1 AAAAAAAAAAAGAGGA
37272828 TCATCCATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAGAGGA
Found at i:37272817 original size:18 final size:18
Alignment explanation
Indices: 37272786--37272820 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37272776 AAAAGGAGAG
* *
37272786 AAAGATGAAGAAAAAAAA
1 AAAGAGGAAAAAAAAAAA
37272804 AAAGAGGAAAAAAAAAA
1 AAAGAGGAAAAAAAAAA
37272821 GAGAGGATCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (18 bp):
AAAGAGGAAAAAAAAAAA
Found at i:37274012 original size:35 final size:35
Alignment explanation
Indices: 37273965--37274103 Score: 185
Period size: 35 Copynumber: 4.1 Consensus size: 35
37273955 ATATATATAT
* *
37273965 AATAATGTGTGAACAGGAGAGATTCCCTGCAACAA
1 AATAATGCGTGAACAGGAAAGATTCCCTGCAACAA
* *
37274000 AATAATGCGTGAACAGGAGAGATTCCCTGCAA-GA
1 AATAATGCGTGAACAGGAAAGATTCCCTGCAACAA
* *
37274034 AATGAT--GTGAACAGGAAAGATTCCCTGCAACAG
1 AATAATGCGTGAACAGGAAAGATTCCCTGCAACAA
* *
37274067 AATAATGCGTGAACAGGAAATATTCCCTGCAAGAA
1 AATAATGCGTGAACAGGAAAGATTCCCTGCAACAA
37274102 AA
1 AA
37274104 GACAAGTGAA
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
32 23 0.25
33 5 0.05
34 6 0.07
35 57 0.63
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (35 bp):
AATAATGCGTGAACAGGAAAGATTCCCTGCAACAA
Found at i:37274056 original size:67 final size:66
Alignment explanation
Indices: 37273968--37274102 Score: 225
Period size: 67 Copynumber: 2.0 Consensus size: 66
37273958 TATATATAAT
* *
37273968 AATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAG
1 AATGTGTGAACAGGAAAGATTCCCTGCAACAAAATAATGCGTGAACAGGAAAGATTCCCTGCAAG
37274033 A
66 A
* *
37274034 AATGATGTGAACAGGAAAGATTCCCTGCAACAGAATAATGCGTGAACAGGAAATATTCCCTGCAA
1 AATG-TGTGAACAGGAAAGATTCCCTGCAACAAAATAATGCGTGAACAGGAAAGATTCCCTGCAA
37274099 GA
65 GA
37274101 AA
1 AA
37274103 AGACAAGTGA
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
66 4 0.06
67 60 0.94
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.19
Consensus pattern (66 bp):
AATGTGTGAACAGGAAAGATTCCCTGCAACAAAATAATGCGTGAACAGGAAAGATTCCCTGCAAG
A
Found at i:37274391 original size:14 final size:13
Alignment explanation
Indices: 37274361--37274398 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
37274351 ATTTCCAAAA
*
37274361 TTTCAAATTAAGT
1 TTTCAAATTAAGC
37274374 TTTCAAACTTAAGC
1 TTTCAAA-TTAAGC
37274388 TTTCAAATTAA
1 TTTCAAATTAA
37274399 AAATATATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.42
Consensus pattern (13 bp):
TTTCAAATTAAGC
Found at i:37278824 original size:20 final size:23
Alignment explanation
Indices: 37278794--37278838 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
37278784 GAAAAAAGAG
37278794 AAATACAAAAAAG-AATAG-ATC
1 AAATACAAAAAAGAAATAGAATC
37278815 AAAT-CAAAAAAGAAATAGAATC
1 AAATACAAAAAAGAAATAGAATC
37278837 AA
1 AA
37278839 CGATTTGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.36
21 9 0.41
22 5 0.23
ACGTcount: A:0.69, C:0.09, G:0.09, T:0.13
Consensus pattern (23 bp):
AAATACAAAAAAGAAATAGAATC
Found at i:37281789 original size:35 final size:35
Alignment explanation
Indices: 37281702--37281943 Score: 268
Period size: 35 Copynumber: 7.1 Consensus size: 35
37281692 GTCCAAAAAG
* * * *
37281702 AAATAATACATGAACAGGAGAGATTCCCTGCAA-G
1 AAATAATGCGTGAACAGAAGAGATTCCCTGCAACA
*
37281736 AAATGAT--GTGAACAGAAGAGATTCCCTGCAACA
1 AAATAATGCGTGAACAGAAGAGATTCCCTGCAACA
* *
37281769 AAATAATGCGTGAACAGAAGAGTTTCCCTGCAA-G
1 AAATAATGCGTGAACAGAAGAGATTCCCTGCAACA
* * *
37281803 AAATGAT--GTGAACAGGAGAGATTCTCTGCAACA
1 AAATAATGCGTGAACAGAAGAGATTCCCTGCAACA
*
37281836 AAATAATGTGTGAACATG-AGAGATTCCCTGCAACA
1 AAATAATGCGTGAACA-GAAGAGATTCCCTGCAACA
37281871 AAATAATGCGTGAACAGGAA-AGATTCCCTGCAACA
1 AAATAATGCGTGAACA-GAAGAGATTCCCTGCAACA
* * *
37281906 GAATAATGCGTGAACAGGAA-ATATTCCCTGCAAGA
1 AAATAATGCGTGAACA-GAAGAGATTCCCTGCAACA
37281941 AAA
1 AAA
37281944 GACAAGTGAA
Statistics
Matches: 180, Mismatches: 20, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
32 43 0.24
33 12 0.07
34 12 0.07
35 111 0.62
36 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.19
Consensus pattern (35 bp):
AAATAATGCGTGAACAGAAGAGATTCCCTGCAACA
Found at i:37281810 original size:67 final size:68
Alignment explanation
Indices: 37281702--37281942 Score: 312
Period size: 67 Copynumber: 3.6 Consensus size: 68
37281692 GTCCAAAAAG
* *
37281702 AAATAATACATGAACAGG-AGAGATTCCCTGCAAGAAATGATGTGAACAGAAGAGATTCCCTGCA
1 AAATAATGCGTGAACAGGAAGAGATTCCCTGCAAGAAATGATGTGAACAGAAGAGATTCCCTGCA
37281766 ACA
66 ACA
* * *
37281769 AAATAATGCGTGAACA-GAAGAGTTTCCCTGCAAGAAATGATGTGAACAGGAGAGATTCTCTGCA
1 AAATAATGCGTGAACAGGAAGAGATTCCCTGCAAGAAATGATGTGAACAGAAGAGATTCCCTGCA
37281833 ACA
66 ACA
* * * *
37281836 AAATAATGTGTGAACATG-AGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAA-AGATTCCC
1 AAATAATGCGTGAACAGGAAGAGATTCCCTGCAA-GAAATGAT--GTGAACA-GAAGAGATTCCC
37281899 TGCAACA
62 TGCAACA
* *
37281906 GAATAATGCGTGAACAGGAA-ATATTCCCTGCAAGAAA
1 AAATAATGCGTGAACAGGAAGAGATTCCCTGCAAGAAA
37281943 AGACAAGTGA
Statistics
Matches: 151, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
66 1 0.01
67 89 0.59
68 7 0.05
69 3 0.02
70 48 0.32
71 3 0.02
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.20
Consensus pattern (68 bp):
AAATAATGCGTGAACAGGAAGAGATTCCCTGCAAGAAATGATGTGAACAGAAGAGATTCCCTGCA
ACA
Found at i:37281885 original size:102 final size:99
Alignment explanation
Indices: 37281712--37281943 Score: 297
Period size: 102 Copynumber: 2.3 Consensus size: 99
37281702 AAATAATACA
* *
37281712 TGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGAAGAGATTCCCTGCAACAAAATAATG
1 TGAACAGGAGAGATTCCCTGCAAAAAATAATGTGAACAGAAGAGATTCCCTGCAACAAAATAATG
*
37281777 CGTGAACA-GAAGAGTTTCCCTGCAAGAAATGATG
66 CGTGAACAGGAA-AGATTCCCTGCAAGAAATGATG
*
37281811 TGAACAGGAGAGATTCTCTGCAACAAAATAATGTGTGAACATG-AGAGATTCCCTGCAACAAAAT
1 TGAACAGGAGAGATTCCCTGCAA-AAAATAA--TGTGAACA-GAAGAGATTCCCTGCAACAAAAT
* *
37281875 AATGCGTGAACAGGAAAGATTCCCTGCAACAGAATAATGCG
62 AATGCGTGAACAGGAAAGATTCCCTGCAAGA-AATGAT--G
* *
37281916 TGAACAGGAAATATTCCCTGCAAGAAAA
1 TGAACAGGAGAGATTCCCTGCAA-AAAA
37281944 GACAAGTGAA
Statistics
Matches: 115, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
99 22 0.19
100 5 0.04
102 54 0.47
103 9 0.08
105 25 0.22
ACGTcount: A:0.41, C:0.18, G:0.22, T:0.19
Consensus pattern (99 bp):
TGAACAGGAGAGATTCCCTGCAAAAAATAATGTGAACAGAAGAGATTCCCTGCAACAAAATAATG
CGTGAACAGGAAAGATTCCCTGCAAGAAATGATG
Found at i:37288893 original size:19 final size:19
Alignment explanation
Indices: 37288819--37288902 Score: 78
Period size: 19 Copynumber: 4.4 Consensus size: 19
37288809 ATGCGCCAAG
* *
37288819 ATGCACTTCGTGTGCTAGG
1 ATGCACTTCGTGTGCCAGT
* *
37288838 ATGCACTTCGTGTTCTAGT
1 ATGCACTTCGTGTGCCAGT
* * * **
37288857 ATACGCTTTGTGCACCAGT
1 ATGCACTTCGTGTGCCAGT
*
37288876 ATGCTCTTCGTGTGCCAGT
1 ATGCACTTCGTGTGCCAGT
37288895 ATGCACTT
1 ATGCACTT
37288903 TATGTGCTGG
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 51 1.00
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
ATGCACTTCGTGTGCCAGT
Found at i:37288908 original size:19 final size:19
Alignment explanation
Indices: 37288800--37288909 Score: 57
Period size: 19 Copynumber: 5.8 Consensus size: 19
37288790 TGTACGGGTT
*
37288800 TATGCACTT-ATGCGCCAAG
1 TATGCACTTCATGTGCC-AG
* *
37288819 -ATGCACTTCGTGTGCTAG
1 TATGCACTTCATGTGCCAG
* * * *
37288837 GATGCACTTCGTGTTCTAG
1 TATGCACTTCATGTGCCAG
* *
37288856 TATACGCTT--TGTGCACCAG
1 TATGCACTTCATGTG--CCAG
* *
37288875 TATGCTCTTCGTGTGCCAG
1 TATGCACTTCATGTGCCAG
*
37288894 TATGCACTTTATGTGC
1 TATGCACTTCATGTGC
37288910 TGGCTTTCCC
Statistics
Matches: 71, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
17 3 0.04
18 10 0.14
19 54 0.76
21 4 0.06
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35
Consensus pattern (19 bp):
TATGCACTTCATGTGCCAG
Found at i:37289220 original size:8 final size:8
Alignment explanation
Indices: 37289207--37289232 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
37289197 TAAGTATAAT
37289207 TAATGTAA
1 TAATGTAA
37289215 TAATGTAA
1 TAATGTAA
37289223 TAATGTAA
1 TAATGTAA
37289231 TA
1 TA
37289233 TTATTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (8 bp):
TAATGTAA
Found at i:37295823 original size:10 final size:11
Alignment explanation
Indices: 37295808--37295836 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
37295798 TCCAAAGATG
37295808 TGAATTGAAT-
1 TGAATTGAATA
37295818 TGAATTGAATA
1 TGAATTGAATA
37295829 TGAATTGA
1 TGAATTGA
37295837 TGTTAAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (11 bp):
TGAATTGAATA
Found at i:37296394 original size:25 final size:25
Alignment explanation
Indices: 37296358--37296425 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 25
37296348 GCTCTTTCAT
* *
37296358 GAGCTTCTTGATTACTGGCTCTCCA
1 GAGCTTCCTGATTACTGGCTCACCA
* **
37296383 GAGCTTCCTGA-TATTGGCTCACTT
1 GAGCTTCCTGATTACTGGCTCACCA
*
37296407 GAACTTCCTGATTAC-GGCT
1 GAGCTTCCTGATTACTGGCT
37296426 TTTATGAGCT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (25 bp):
GAGCTTCCTGATTACTGGCTCACCA
Found at i:37298754 original size:46 final size:46
Alignment explanation
Indices: 37298702--37298792 Score: 130
Period size: 47 Copynumber: 2.0 Consensus size: 46
37298692 TTTCAGCCCA
37298702 GCTATTTAGTTTGTAGGCC-CATTTTAGGTTTCATTTTGATTTTGGG
1 GCTATTTAGTTTGTAGGCCACA-TTTAGGTTTCATTTTGATTTTGGG
* * *
37298748 GCTATTTAGTTTGTGGGCCTACATTTATGTTTTATTTTGATTTTG
1 GCTATTTAGTTTGTAGGCC-ACATTTAGGTTTCATTTTGATTTTG
37298793 AGCAAATTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
46 18 0.45
47 20 0.50
48 2 0.05
ACGTcount: A:0.15, C:0.10, G:0.22, T:0.53
Consensus pattern (46 bp):
GCTATTTAGTTTGTAGGCCACATTTAGGTTTCATTTTGATTTTGGG
Found at i:37302586 original size:18 final size:18
Alignment explanation
Indices: 37302563--37302600 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
37302553 TCATTTTTAT
37302563 TTTCTCTTTTCCTATTTC
1 TTTCTCTTTTCCTATTTC
*
37302581 TTTCTCTTTTGCTATTTC
1 TTTCTCTTTTCCTATTTC
37302599 TT
1 TT
37302601 CTGTTCTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.05, C:0.24, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTCTCTTTTCCTATTTC
Found at i:37302610 original size:17 final size:18
Alignment explanation
Indices: 37302563--37302610 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
37302553 TCATTTTTAT
* *
37302563 TTTCTCTTTTCCTATTTC
1 TTTCTCTTCTGCTATTTC
*
37302581 TTTCTCTTTTGCTATTTC
1 TTTCTCTTCTGCTATTTC
*
37302599 -TTCTGTTCTGCT
1 TTTCTCTTCTGCT
37302611 TTTTGTCTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 10 0.37
18 17 0.63
ACGTcount: A:0.04, C:0.25, G:0.06, T:0.65
Consensus pattern (18 bp):
TTTCTCTTCTGCTATTTC
Found at i:37303368 original size:44 final size:44
Alignment explanation
Indices: 37303195--37304140 Score: 701
Period size: 44 Copynumber: 20.9 Consensus size: 44
37303185 TTTAATCCAA
* * * * * *
37303195 TCCACTGCAACTTCAAGGATATAGGGTTTGTAGCCTC-ATCTTGC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATC-TGC
* * * * *
37303239 TCCACTGCAACTTCAGAGAGATAAGATTTGCCACTGTAACTTCATTCTAC
1 TCCACTACAACTTCAGGGAGATAAGA-TT-----TGTAGCTTCAATCTGC
* * * * * * *
37303289 ACCATTGCAACTTCAGGG-GCATAGGATTAGGAGCTTC-ATCTTGT
1 TCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCTTCAATC-TGC
* * * **
37303333 TCCACTACAACTTCAAGGAGATAAGACTTGTAGCTTTAATCTAT
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* * *
37303377 TCCACTACAACTTCAGTGAGATAAGACTTGTAGCTTAAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* *
37303421 TCCACTGCAACTTCAGGGAGATAATATTTGTAGCTTCAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* * *
37303465 TCCACTACAACTTCAGTGAGATAAGACTTGTAGCTTAAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* *
37303509 TCCACTGCAACTTCAGGGAGATAAGATTCACTATGGTAGATTCAAT-TAGAC
1 TCCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCTTCAATCT-G-C
* * * *
37303560 -CCACTACAACTTTAAGGATAT-GGTATTTGTAGCTTCAATCTGC
1 TCCACTACAACTTCAGGGAGATAAG-ATTTGTAGCTTCAATCTGC
* * *
37303603 TACATTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
** * * * *
37303647 TCCACTGTAACTTCAAGGAGATAGGATTCGCTATGGTAGATTTAATC--C
1 TCCACTACAACTTCAGGGAGATAAGA-T---T-T-GTAGCTTCAATCTGC
* * * *
37303695 AACCTACTACAACTTTATGGG-TATAGGATTTGTAGCTTCAATCTGC
1 -TCC-ACTACAACTTCA-GGGAGATAAGATTTGTAGCTTCAATCTGC
* * * *
37303741 CCCACTACAAATTTAGGGAGATAAGATTTGTAGCTTCAATCTAC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* * * *
37303785 TCCACTGCAACTTCAGGGAGATGAGATTCGTAGCTTCAATATGC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
*
37303829 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTAC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* * * * *
37303873 TCTACTACAACTTCAGGGAGATAATATTTGTAACTTTAATCTAC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
*
37303917 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* * * *
37303961 TCCACTGCAAATTCAGGAAGATAAGATTCACTAGTAGATTCAATCTG-
1 TCCACTACAACTTCAGGGAGATAAGATT---T-GTAGCTTCAATCTGC
** * * * *
37304008 TCCCACTGTAACTTCAGGG-GTGTAGGATATGTAGCTTAAATCTGC
1 T-CCACTACAACTTCAGGGAG-ATAAGATTTGTAGCTTCAATCTGC
* * * * * *
37304053 TCCACTGCAACTTTAGAGAGATAAGATTCGCTATGGTGATTTCAATCTGA
1 TCCACTACAACTTCAGGGAGATAAGATTTG-TA----G-CTTCAATCTGC
* *
37304103 TCCACTACAACTTCAGGG-GTATAGGATTTGTAGTTTCA
1 TCCACTACAACTTCAGGGAG-ATAAGATTTGTAGCTTCA
37304141 CTAATCTGTT
Statistics
Matches: 721, Mismatches: 131, Indels: 100
0.76 0.14 0.11
Matches are distributed among these distances:
43 6 0.01
44 523 0.73
45 19 0.03
46 3 0.00
47 3 0.00
48 34 0.05
49 15 0.02
50 113 0.16
51 5 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (44 bp):
TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
Found at i:37303626 original size:138 final size:136
Alignment explanation
Indices: 37303195--37304140 Score: 724
Period size: 138 Copynumber: 7.0 Consensus size: 136
37303185 TTTAATCCAA
* * * * * * * *
37303195 TCCACTGCAACTTCAAGGATATAGGGTTTGTAGCCTC-ATCTTGCTCCACTGCAACTTCAGAGAG
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATC-TACTCCACTGCAACTTCAGGGAG
* * * * * * *
37303259 ATAAGATTTGCCAC-TGTA-ACTTCATTCTA-CACCATTGCAACTTCAGGG-GCATAGGATTAGG
65 ATAAGA-TT---ACTTGTAGA-TTCAATCTAGCTCCACTACAACTTCAGGGAG-ATAAGATTTGT
*
37303320 AGCTTC-ATCTTGT
124 AGCTTCAATC-TGC
* * * * * *
37303333 TCCACTACAACTTCAAGGAGATAAGACTTGTAGCTTTAATCTATTCCACTACAACTTCAGTGAGA
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAGA
* * * *
37303398 TAAG---ACTTGTAGCTTAAATCT-GCTCCACTGCAACTTCAGGGAGATAATATTTGTAGCTTCA
66 TAAGATTACTTGTAGATTCAATCTAGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCA
37303459 ATCTGC
131 ATCTGC
* * * *
37303465 TCCACTACAACTTCAGTGAGATAAGACTTGTAGCTTAAATCTGCTCCACTGCAACTTCAGGGAGA
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAGA
* * * *
37303530 TAAGATTCACTATGGTAGATTCAAT-TAGAC-CCACTACAACTTTAAGGATAT-GGTATTTGTAG
66 TAAGATT-ACT-T-GTAGATTCAATCTAG-CTCCACTACAACTTCAGGGAGATAAG-ATTTGTAG
37303592 CTTCAATCTGC
126 CTTCAATCTGC
* * * * * *
37303603 TACATTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGTAACTTCAAGGAGA
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAGA
* * * * * * * * *
37303668 TAGGATTCGCTATGGTAGATTTAATCCAAC-CTACTACAACTTTATGGG-TATAGGATTTGTAGC
66 TAAGATT-ACT-T-GTAGATTCAATCTAGCTCCACTACAACTTCA-GGGAGATAAGATTTGTAGC
37303731 TTCAATCTGC
127 TTCAATCTGC
* * *
37303741 CCCACTACAAATTTAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAGA
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAGA
* * *
37303806 TGAGATT-C--GTAGCTTCAATAT-GCTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCA
66 TAAGATTACTTGTAGATTCAATCTAGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCA
*
37303867 ATCTAC
131 ATCTGC
* * * * *
37303873 TCTACTACAACTTCAGGGAGATAATATTTGTAACTTTAATCTACTCCACTACAACTTCAGGGAGA
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAGA
* * * * * *
37303938 TAAGA-T--TTGTAGCTTTAATCT-GCTCCACTGCAAATTCAGGAAGATAAGATTCACTAGTAGA
66 TAAGATTACTTGTAGATTCAATCTAGCTCCACTACAACTTCAGGGAGATAAGATT---T-GTAGC
37303999 TTCAATCTG-
127 TTCAATCTGC
** * * * * * * *
37304008 TCCCACTGTAACTTCAGGG-GTGTAGGATATGTAGCTTAAATCTGCTCCACTGCAACTTTAGAGA
1 T-CCACTACAACTTCAGGGAG-ATAAGATTTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGA
* * *
37304072 GATAAGATTCGCTATGGT-GATTTCAATCT-GATCCACTACAACTTCAGGG-GTATAGGATTTGT
64 GATAAGATT-ACT-T-GTAGA-TTCAATCTAGCTCCACTACAACTTCAGGGAG-ATAAGATTTGT
*
37304134 AGTTTCA
124 AGCTTCA
37304141 CTAATCTGTT
Statistics
Matches: 663, Mismatches: 109, Indels: 72
0.79 0.13 0.09
Matches are distributed among these distances:
131 7 0.01
132 246 0.37
133 4 0.01
135 3 0.00
136 70 0.11
137 3 0.00
138 284 0.43
139 10 0.02
140 1 0.00
141 3 0.00
142 32 0.05
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (136 bp):
TCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAGA
TAAGATTACTTGTAGATTCAATCTAGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCA
ATCTGC
Found at i:37307242 original size:22 final size:22
Alignment explanation
Indices: 37307216--37307296 Score: 117
Period size: 22 Copynumber: 3.7 Consensus size: 22
37307206 ATACGTCACT
37307216 TGAGAGCTTAGTACGTTAGCCA
1 TGAGAGCTTAGTACGTTAGCCA
37307238 TGAGAGCTTAGTACGTTAGCCA
1 TGAGAGCTTAGTACGTTAGCCA
* * * **
37307260 TGAGGGTTTAGTTCGTTAAACA
1 TGAGAGCTTAGTACGTTAGCCA
37307282 TGAGAGCTTAGTACG
1 TGAGAGCTTAGTACG
37307297 ATACACCTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (22 bp):
TGAGAGCTTAGTACGTTAGCCA
Found at i:37309027 original size:22 final size:22
Alignment explanation
Indices: 37309000--37309044 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
37308990 TTACAGAGTG
*
37309000 TCATTAAGATAATATTAA-ATTT
1 TCATT-AGAAAATATTAACATTT
*
37309022 TCATTAGAAAATTTTAACATTT
1 TCATTAGAAAATATTAACATTT
37309044 T
1 T
37309045 GATAGTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (22 bp):
TCATTAGAAAATATTAACATTT
Found at i:37309279 original size:10 final size:10
Alignment explanation
Indices: 37309274--37309304 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
37309264 GGATTTCTAG
37309274 ACATTTCTTC
1 ACATTTCTTC
37309284 ACATTTCTTC
1 ACATTTCTTC
37309294 ACATTTCTTC
1 ACATTTCTTC
37309304 A
1 A
37309305 GCCAAAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.23, C:0.29, G:0.00, T:0.48
Consensus pattern (10 bp):
ACATTTCTTC
Found at i:37309291 original size:20 final size:20
Alignment explanation
Indices: 37309266--37309304 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37309256 ACTAAATTGG
*
37309266 ATTTCTAGACATTTCTTCAC
1 ATTTCTACACATTTCTTCAC
*
37309286 ATTTCTTCACATTTCTTCA
1 ATTTCTACACATTTCTTCA
37309305 GCCAAAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.26, G:0.03, T:0.49
Consensus pattern (20 bp):
ATTTCTACACATTTCTTCAC
Found at i:37313372 original size:33 final size:32
Alignment explanation
Indices: 37313298--37313489 Score: 127
Period size: 33 Copynumber: 5.8 Consensus size: 32
37313288 CATTGTTTAT
*
37313298 ATGTAAGACCATAGCTGGGCTT-TGGCATTTTA
1 ATGTAAGACCATAGCTGGG-TTATGGCATTTGA
* *
37313330 ATGAAAAGACCATAACTGGGTTATGGCACTTTGA
1 ATG-TAAGACCATAGCTGGGTTATGGCA-TTTGA
* * * * * * *
37313364 ACGTAAGACCATGGTTGGATCATGACAGTATTTA
1 ATGTAAGACCATAGCTGGGTTATGGCA-T-TTGA
* *
37313398 TAAGTAAGACCATAGCTGGGCTATGGCATTGTG-
1 -ATGTAAGACCATAGCTGGGTTATGGCATT-TGA
* ***
37313431 ATGATAAGACCATAACTGGGTTATGGCACTACAA
1 ATG-TAAGACCATAGCTGGGTTATGGCA-TTTGA
* *
37313465 ATGTAAGACCATGGCTGGGTCATGG
1 ATGTAAGACCATAGCTGGGTTATGG
37313490 TAATGTATGT
Statistics
Matches: 121, Mismatches: 30, Indels: 17
0.72 0.18 0.10
Matches are distributed among these distances:
32 7 0.06
33 79 0.65
34 15 0.12
35 20 0.17
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28
Consensus pattern (32 bp):
ATGTAAGACCATAGCTGGGTTATGGCATTTGA
Found at i:37313441 original size:101 final size:101
Alignment explanation
Indices: 37313266--37313488 Score: 311
Period size: 101 Copynumber: 2.2 Consensus size: 101
37313256 AATTGACGGA
* * * * * * *
37313266 TAAGACCATGGTTGGACCATGGCATTGTTTATATGTAAGACCATAGCTGGGCTTTGGCATTTTAA
1 TAAGACCATGGTTGGATCATGACAGTATTTATAAGTAAGACCATAGCTGGGCTATGGCATTGTAA
***
37313331 TGAAAAGACCATAACTGGGTTATGGCACTTTGAACG
66 TGAAAAGACCATAACTGGGTTATGGCACTACAAACG
*
37313367 TAAGACCATGGTTGGATCATGACAGTATTTATAAGTAAGACCATAGCTGGGCTATGGCATTGTGA
1 TAAGACCATGGTTGGATCATGACAGTATTTATAAGTAAGACCATAGCTGGGCTATGGCATTGTAA
* *
37313432 TGATAAGACCATAACTGGGTTATGGCACTACAAATG
66 TGAAAAGACCATAACTGGGTTATGGCACTACAAACG
* *
37313468 TAAGACCATGGCTGGGTCATG
1 TAAGACCATGGTTGGATCATG
37313489 GTAATGTATG
Statistics
Matches: 107, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 107 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (101 bp):
TAAGACCATGGTTGGATCATGACAGTATTTATAAGTAAGACCATAGCTGGGCTATGGCATTGTAA
TGAAAAGACCATAACTGGGTTATGGCACTACAAACG
Found at i:37322620 original size:18 final size:17
Alignment explanation
Indices: 37322596--37322668 Score: 71
Period size: 17 Copynumber: 4.4 Consensus size: 17
37322586 CTCGTTTTTA
*
37322596 TTTTCTCTTTTGTTATT
1 TTTTCTCTTTTGCTATT
37322613 TCTTTCTCTTTTGCTATT
1 T-TTTCTCTTTTGCTATT
* *
37322631 TTTTCTGTTTTTCT-TT
1 TTTTCTCTTTTGCTATT
*
37322647 TTGTCTTCTTTTG-T-TT
1 TTTTC-TCTTTTGCTATT
37322663 TTTTCT
1 TTTTCT
37322669 TTTGCAGGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
15 1 0.02
16 13 0.28
17 17 0.36
18 16 0.34
ACGTcount: A:0.03, C:0.15, G:0.07, T:0.75
Consensus pattern (17 bp):
TTTTCTCTTTTGCTATT
Found at i:37329764 original size:25 final size:25
Alignment explanation
Indices: 37329702--37329774 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 25
37329692 GACACACCAC
* *
37329702 AGCTCGCAAGAGCATCCCATTACTT
1 AGCTCTCACGAGCATCCCATTACTT
* *
37329727 AGCTCTTATGAGCATCCCATTA-TAT
1 AGCTCTCACGAGCATCCCATTACT-T
* *
37329752 GGCTCTCACGAGCTTCCCGATTA
1 AGCTCTCACGAGCATCCC-ATTA
37329775 ATGAATCTCT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
24 1 0.03
25 34 0.87
26 4 0.10
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (25 bp):
AGCTCTCACGAGCATCCCATTACTT
Found at i:37329891 original size:25 final size:25
Alignment explanation
Indices: 37329810--37329894 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 25
37329800 TGACTCGTAT
* *
37329810 GAGCTTCTAGATTAATGGCTTTTTG
1 GAGCTTCTAGATTAATGGCTCTTCG
* ** * * *
37329835 GAGCATCCCGATAAAAAGGCTCTCTCAT
1 GAGCTTCTAGAT-TAATGGCTCT-TC-G
37329863 GAGCTTCTAGATTAATGGCTCTTCG
1 GAGCTTCTAGATTAATGGCTCTTCG
37329888 GAGCTTC
1 GAGCTTC
37329895 CTAATATTGG
Statistics
Matches: 43, Mismatches: 14, Indels: 6
0.68 0.22 0.10
Matches are distributed among these distances:
25 16 0.37
26 9 0.21
27 9 0.21
28 9 0.21
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (25 bp):
GAGCTTCTAGATTAATGGCTCTTCG
Found at i:37339890 original size:21 final size:21
Alignment explanation
Indices: 37339853--37339898 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
37339843 ATATAAAAAT
*
37339853 TAAATTAAAAACAAAAAT-AC
1 TAAAATAAAAACAAAAATAAC
*
37339873 TAAAATAAAAATAGAAAATAAC
1 TAAAATAAAAACA-AAAATAAC
37339895 TAAA
1 TAAA
37339899 TTAATAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 11 0.50
21 5 0.23
22 6 0.27
ACGTcount: A:0.72, C:0.07, G:0.02, T:0.20
Consensus pattern (21 bp):
TAAAATAAAAACAAAAATAAC
Found at i:37339892 original size:7 final size:6
Alignment explanation
Indices: 37339825--37339893 Score: 50
Period size: 6 Copynumber: 11.0 Consensus size: 6
37339815 AGAAGCAAAC
* * * * *
37339825 AAATGA AAA-AA AAATAGA ATATAA AAATTA AATTAA AAACAA AAATACTA
1 AAATAA AAATAA AAATA-A AAATAA AAATAA AAATAA AAATAA AAATA--A
37339875 AAATAA AAATAGA AAATAA
1 AAATAA AAATA-A AAATAA
37339894 CTAAATTAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
5 4 0.08
6 28 0.57
7 11 0.22
8 6 0.12
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:37346081 original size:17 final size:17
Alignment explanation
Indices: 37346029--37346096 Score: 66
Period size: 17 Copynumber: 3.8 Consensus size: 17
37346019 TAGGGGTTCT
37346029 AATTAGAAAGAGATTTC
1 AATTAGAAAGAGATTTC
*
37346046 AATT-GATCAACCTAGATTTC
1 AATTAGA--AA--GAGATTTC
*
37346066 AATTAGAAAGAGATTTT
1 AATTAGAAAGAGATTTC
*
37346083 AATTCGAAAGAGAT
1 AATTAGAAAGAGAT
37346097 ATTAACATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
16 2 0.05
17 23 0.55
18 2 0.05
19 2 0.05
20 11 0.26
21 2 0.05
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.31
Consensus pattern (17 bp):
AATTAGAAAGAGATTTC
Found at i:37346101 original size:17 final size:17
Alignment explanation
Indices: 37346066--37346101 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
37346056 CCTAGATTTC
*
37346066 AATTAGAAAGAGATTTT
1 AATTAGAAAGAGATATT
*
37346083 AATTCGAAAGAGATATT
1 AATTAGAAAGAGATATT
37346100 AA
1 AA
37346102 CATAATTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.17, T:0.31
Consensus pattern (17 bp):
AATTAGAAAGAGATATT
Found at i:37347972 original size:27 final size:27
Alignment explanation
Indices: 37347942--37348689 Score: 687
Period size: 27 Copynumber: 27.9 Consensus size: 27
37347932 ATATCTGCAT
*
37347942 CGAAATACCCTCATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
37347969 CGAAATACCCCCATAGGATAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
37347996 CGAAATACCCTC--AGGGTAGAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * * *
37348021 CGAAATACCCCTATAAGGTAGAATGGC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
37348048 CGAAATACCCCCATAGGGTAGAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
37348075 TGAAATACCCCTA-AGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
37348101 CGAAATACCCCCATAGGGTAAAATAAC
1 CGAAATACCCCCATAGGGTAAAATGAC
**
37348128 TAAAATACCCCCAT-GGGATAAAATGAC
1 CGAAATACCCCCATAGGG-TAAAATGAC
* * * *
37348155 TGGAATACCCCTATAGGGTAAAATAAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
37348182 CAAAATACCCCCATAGGGTAAAATAAC
1 CGAAATACCCCCATAGGGTAAAATGAC
**
37348209 TAAAATA-CCCCATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * *
37348235 CG-AATTCCCACTACAGGGTAAAATGAC
1 CGAAATACCC-CCATAGGGTAAAATGAC
* **
37348262 CGAATTACCCCCACCGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * * *
37348289 CGAATTCCCCCCACAGGGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
** *
37348316 CGAAATACCCTTGA-AAGGTAAAATGAC
1 CGAAATACCC-CCATAGGGTAAAATGAC
* *
37348343 TGAAATACCCTCATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
** * *
37348370 TAAAATACCGCCAAAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * *
37348397 TGAAATACCCTCGA-AGGGTAAAATGAT
1 CGAAATACCC-CCATAGGGTAAAATGAC
37348424 CGAAATACCCCCGA-AGGGTAAAATGAC
1 CGAAATACCCCC-ATAGGGTAAAATGAC
**
37348451 TAAAATACCCCCGA-AGGGTAAAATGAC
1 CGAAATACCCCC-ATAGGGTAAAATGAC
** * * * *
37348478 TAAAATACCCCAAAAGGGTAAAATAAT
1 CGAAATACCCCCATAGGGTAAAATGAC
*
37348505 CGAAATACCCTCGA-AGGGTAAAATGAC
1 CGAAATACCC-CCATAGGGTAAAATGAC
* *
37348532 TGAAATACCCTCATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
**
37348559 TAAAATACCCCCGA-AGGGTAAAATGA-
1 CGAAATACCCCC-ATAGGGTAAAATGAC
* ** * *
37348585 CTAAATACCCTTAAAGGGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
**
37348612 CGAAATACCCTTGA-AGGGTAAAATGAC
1 CGAAATACCC-CCATAGGGTAAAATGAC
** * *
37348639 TAAAATACCCCGAAAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
37348666 TGAAATACCCTCATAGGGTAAAAT
1 CGAAATACCCCCATAGGGTAAAAT
37348690 AACTTTTATA
Statistics
Matches: 609, Mismatches: 92, Indels: 40
0.82 0.12 0.05
Matches are distributed among these distances:
25 25 0.04
26 73 0.12
27 495 0.81
28 16 0.03
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (27 bp):
CGAAATACCCCCATAGGGTAAAATGAC
Found at i:37349089 original size:28 final size:28
Alignment explanation
Indices: 37349057--37349189 Score: 151
Period size: 28 Copynumber: 4.5 Consensus size: 28
37349047 TACTGCATTG
37349057 CACTGTTACTGTATTAGGCTAAGGCCCA
1 CACTGTTACTGTATTAGGCTAAGGCCCA
*
37349085 CACTGTTACTGTATTGGGCTAAGGTCCACA
1 CACTGTTACTGTATTAGGCTAAGG-CC-CA
*
37349115 CACTGTTACTGTAATAGGCTAAGGCCCA
1 CACTGTTACTGTATTAGGCTAAGGCCCA
*
37349143 CACTG-TACTGCTACTGAATAGGGCTCAGGCCCA
1 CACTGTTACTG-TA-T---TA-GGCTAAGGCCCA
*
37349176 GACTGTTACTGTAT
1 CACTGTTACTGTAT
37349190 ATTGTATGCT
Statistics
Matches: 90, Mismatches: 6, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
27 5 0.06
28 32 0.36
29 4 0.04
30 24 0.27
32 3 0.03
33 17 0.19
34 5 0.06
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (28 bp):
CACTGTTACTGTATTAGGCTAAGGCCCA
Found at i:37349173 original size:33 final size:34
Alignment explanation
Indices: 37349058--37349186 Score: 102
Period size: 33 Copynumber: 4.1 Consensus size: 34
37349048 ACTGCATTGC
* *
37349058 ACTGTTACTGTATTAGGCTAAGGCCCACACTGTT
1 ACTGCTACTGTAATAGGCTAAGGCCCACACTGTT
* *
37349092 ACTG-TA---T--TGGGCTAAGGTCCACAC----
1 ACTGCTACTGTAATAGGCTAAGGCCCACACTGTT
*
37349116 ACTGTTACTGTAATAGGCTAAGGCCCACACTG-T
1 ACTGCTACTGTAATAGGCTAAGGCCCACACTGTT
* *
37349149 ACTGCTACTG-AATAGGGCTCAGGCCCAGACTGTT
1 ACTGCTACTGTAATA-GGCTAAGGCCCACACTGTT
37349183 ACTG
1 ACTG
37349187 TATATTGTAT
Statistics
Matches: 77, Mismatches: 7, Indels: 22
0.73 0.07 0.21
Matches are distributed among these distances:
24 4 0.05
25 2 0.03
28 16 0.21
30 16 0.21
32 4 0.05
33 26 0.34
34 9 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (34 bp):
ACTGCTACTGTAATAGGCTAAGGCCCACACTGTT
Found at i:37349463 original size:32 final size:32
Alignment explanation
Indices: 37349427--37349495 Score: 120
Period size: 32 Copynumber: 2.2 Consensus size: 32
37349417 GCTTTTTCCT
37349427 TGAATATTTCAAACTGCTAAATTAGGAGATGA
1 TGAATATTTCAAACTGCTAAATTAGGAGATGA
* *
37349459 TGAATATTTTAAACTGCTAGATTAGGAGATGA
1 TGAATATTTCAAACTGCTAAATTAGGAGATGA
37349491 TGAAT
1 TGAAT
37349496 TTTAAAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.33
Consensus pattern (32 bp):
TGAATATTTCAAACTGCTAAATTAGGAGATGA
Found at i:37352082 original size:21 final size:20
Alignment explanation
Indices: 37352052--37352093 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
37352042 GAGTTCTTGG
37352052 GGTAATCTCACAGCCTCACA
1 GGTAATCTCACAGCCTCACA
* *
37352072 GGTAACTCTCACTGTCTCACA
1 GGTAA-TCTCACAGCCTCACA
37352093 G
1 G
37352094 CTCCCTTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (20 bp):
GGTAATCTCACAGCCTCACA
Found at i:37355002 original size:20 final size:20
Alignment explanation
Indices: 37354977--37355034 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
37354967 ATCAGAAGTA
*
37354977 TTAATTA-AGCTTAAGTTTAG
1 TTAATTATAGCTTAA-TTAAG
*
37354997 TTAATTATAGGTTAATTAAG
1 TTAATTATAGCTTAATTAAG
*
37355017 TTAATTATA-ATTAATTAA
1 TTAATTATAGCTTAATTAA
37355035 TAAACTAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.24
20 20 0.59
21 6 0.18
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.47
Consensus pattern (20 bp):
TTAATTATAGCTTAATTAAG
Found at i:37355012 original size:11 final size:10
Alignment explanation
Indices: 37354977--37355033 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
37354967 ATCAGAAGTA
37354977 TTAATTA-AG
1 TTAATTATAG
37354986 CTTAAGTT-TAG
1 -TTAA-TTATAG
37354997 TTAATTATAGG
1 TTAATTATA-G
37355008 TTAATTA-AG
1 TTAATTATAG
*
37355017 TTAATTATAA
1 TTAATTATAG
37355027 TTAATTA
1 TTAATTA
37355034 ATAAACTAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
9 10 0.24
10 19 0.46
11 12 0.29
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (10 bp):
TTAATTATAG
Found at i:37370723 original size:50 final size:50
Alignment explanation
Indices: 37370607--37371248 Score: 329
Period size: 50 Copynumber: 12.9 Consensus size: 50
37370597 AAACCATGGT
* * * * * *
37370607 TTGCAACTCAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCAGGCGA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTATTTCCCAGAC-A
*** * * *
37370658 -TGCACCGGAACAGATTGAAGCTACAACGGCGAATCTCATTTCCCCGACA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTATTTCCCAGACA
* * * *
37370707 TTGCAATTCAAAAGATT-AAGGCCACAACAGC-ATATCTTACTTTCCTAG-CA
1 TTGCAATTGAAAAGATTGAA-GCTACAACGGCGA-ATCTTA-TTTCCCAGACA
* * * * * * * * *
37370757 TTGTAGTGGAACAGATTGAAGCTACAACAGTGGATCTTACTTCCCTGACA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTATTTCCCAGACA
* * * * * * *
37370807 TTGCAGTTTAAAAGATCGAAGCCACAACGGCCAATTTTACTTT-CAAG-CGA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTA-TTTCCCAGAC-A
** * * * *
37370857 -TGCAACGGAACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTATTTCCCAGACA
* * * * * * *
37370906 TTACAATTCAAAAGATTGAGGCCACAACAGCAAATCTTACTTTCCTAG-CA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTA-TTTCCCAGACA
* * * * * * *
37370956 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTATTTCCCAGACA
** ** * * *
37371006 TTGCAATTTG-AAAGATCAAAGCCCCAATGGCAAATCTTATTT-CCAGGCGA
1 TTGCAA-TTGAAAAGATTGAAGCTACAACGGCGAATCTTATTTCCCAGAC-A
* *** * * * * *
37371056 -TACAGCGGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTATTTCCCAGACA
* * * *
37371105 TTGCAATTTG-AAAGATCGAAGCCACAACGGTGAATCTTATTT-CCAGGCA
1 TTGCAA-TTGAAAAGATTGAAGCTACAACGGCGAATCTTATTTCCCAGACA
* *** * * * * ** *
37371154 ATGCAGCGGAACAGATTGAAGCTACGACGACAAATCTCGTTTCCCCGACA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTATTTCCCAGACA
* * *
37371204 TTGCAATTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTCCC
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTATTTCCC
37371249 TAGTGGTGTA
Statistics
Matches: 415, Mismatches: 154, Indels: 45
0.68 0.25 0.07
Matches are distributed among these distances:
48 4 0.01
49 108 0.26
50 285 0.69
51 18 0.04
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (50 bp):
TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTATTTCCCAGACA
Found at i:37370906 original size:99 final size:100
Alignment explanation
Indices: 37370607--37371245 Score: 691
Period size: 99 Copynumber: 6.4 Consensus size: 100
37370597 AAACCATGGT
* * * * * * *
37370607 TTGCAACTCAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCAGGCGATGCACCGGAACAGA
1 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCCAAGCGATGCAGCGGAACAGA
* *
37370672 TTGAAGCTACAACGGCGAATCTCATTTCCCCGACA
66 TTGAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * * * * *
37370707 TTGCAATTCAAAAGAT-TAAGGCCACAACAGC-ATATCTTACTTTCCTAGC-ATTGTAGTGGAAC
1 TTGCAATTTAAAAGATCGAA-GCCACAACGGCGA-ATCTTACTTTCCAAGCGA-TGCAGCGGAAC
* * * *
37370769 AGATTGAAGCTACAACAGTGGATCTTACTTCCCTGACA
63 AGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * * *
37370807 TTGCAGTTTAAAAGATCGAAGCCACAACGGCCAATTTTACTTT-CAAGCGATGCAACGGAACAGA
1 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCCAAGCGATGCAGCGGAACAGA
*
37370871 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
66 TTGAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * * * * * * *
37370906 TTACAATTCAAAAGATTGAGGCCACAACAGCAAATCTTACTTTCCTAGC-ATTGCAGTGGAACAG
1 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCCAAGCGA-TGCAGCGGAACAG
* * *
37370970 ATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
65 ATTGAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * * * * * *
37371006 TTGCAATTTGAAAGATCAAAGCCCCAATGGCAAATCTTA-TTTCCAGGCGATACAGCGGAACAGA
1 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCCAAGCGATGCAGCGGAACAGA
37371070 TTGAAGCTACAACAGCGAATCTCACTTCCCCGACA
66 TTGAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * * *
37371105 TTGCAATTTGAAAGATCGAAGCCACAACGGTGAATCTTA-TTTCCAGGCAATGCAGCGGAACAGA
1 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCCAAGCGATGCAGCGGAACAGA
* * **
37371169 TTGAAGCTACGAC-GACAAATCTCGTTTCCCCGACA
66 TTGAAGCTACAACAG-CGAATCTCACTTCCCCGACA
* * * *
37371204 TTGCAATTAAAAAGATTGAAGCTACAACAGCGAATCTTACTT
1 TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTT
37371246 CCCTAGTGGT
Statistics
Matches: 450, Mismatches: 78, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
98 1 0.00
99 255 0.57
100 191 0.42
101 3 0.01
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (100 bp):
TTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCCAAGCGATGCAGCGGAACAGA
TTGAAGCTACAACAGCGAATCTCACTTCCCCGACA
Found at i:37370994 original size:199 final size:199
Alignment explanation
Indices: 37370607--37371245 Score: 809
Period size: 199 Copynumber: 3.2 Consensus size: 199
37370597 AAACCATGGT
* * * * * *
37370607 TTGCAACTCAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCAGGCGATGCACCGGAACAGA
1 TTGCAATTTAAAAGATCGAAGCCACAATGGCAAATCTTACTT-TCAGGCGATGCAACGGAACAGA
* *
37370672 TTGAAGCTACAACGGCGAATCTCATTTCCCCGACATTGCAATTCAAAAGATTAAGGCCACAACAG
65 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAGGCCACAACAG
* * *
37370737 CATATCTTACTTTCCTAGCATTGTAGTGGAACAGATTGAAGCTACAACAGTGGATCTTACTTCCC
130 CAAATCTTACTTTCCTAGCATTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCC
37370802 TGACA
195 TGACA
* * * * *
37370807 TTGCAGTTTAAAAGATCGAAGCCACAACGGCCAATTTTACTTTCAAGCGATGCAACGGAACAGAT
1 TTGCAATTTAAAAGATCGAAGCCACAATGGCAAATCTTACTTTCAGGCGATGCAACGGAACAGAT
*
37370872 TGAAGCTACAACGGCGAATCTCACTTCCCCGACATTACAATTCAAAAGATTGAGGCCACAACAGC
66 TGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAGGCCACAACAGC
37370937 AAATCTTACTTTCCTAGCATTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCT
131 AAATCTTACTTTCCTAGCATTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCT
37371002 GACA
196 GACA
* * * * *
37371006 TTGCAATTTGAAAGATCAAAGCCCCAATGGCAAATCTTA-TTTCCAGGCGATACAGCGGAACAGA
1 TTGCAATTTAAAAGATCGAAGCCACAATGGCAAATCTTACTTT-CAGGCGATGCAACGGAACAGA
* ** * * *
37371070 TTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCAATTTGAAAGATCGAAGCCACAACGG
65 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAGGCCACAACAG
** * * * ** ***
37371135 TGAATCTTA-TTTCC-AGGCAATGCAGCGGAACAGATTGAAGCTACGAC-GACAAATCTCGTTTC
130 CAAATCTTACTTTCCTA-GCATTGCAGTGGAACAGATTGAAGCTACAACAG-CGGATCTTACTTC
*
37371197 CCCGACA
193 CCTGACA
* * * ** *
37371204 TTGCAATTAAAAAGATTGAAGCTACAACAGCGAATCTTACTT
1 TTGCAATTTAAAAGATCGAAGCCACAATGGCAAATCTTACTT
37371246 CCCTAGTGGT
Statistics
Matches: 382, Mismatches: 53, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
197 2 0.01
198 80 0.21
199 265 0.69
200 35 0.09
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (199 bp):
TTGCAATTTAAAAGATCGAAGCCACAATGGCAAATCTTACTTTCAGGCGATGCAACGGAACAGAT
TGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAGGCCACAACAGC
AAATCTTACTTTCCTAGCATTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCT
GACA
Found at i:37371304 original size:298 final size:298
Alignment explanation
Indices: 37370616--37371276 Score: 720
Period size: 298 Copynumber: 2.2 Consensus size: 298
37370606 TTTGCAACTC
** * ** * **
37370616 AAAAGATTGAAGCCACAATGGCGAATCTTACTTCCC-AGGC-GATGCACCGGAACAGATTGAAGC
1 AAAAGATTGAAGCCACAACAGCAAATCTTACTTCCCTA-GCAG-TGCAATGAAACAGATCAAAGC
* * * * * ** * * * ** *
37370679 TACAACGGCGAATCTCATTTCCCCGACATTGCAATTCAAAAGATTAAGGCCACAACAGCATATCT
64 TACAACAGCGGATCTAACTTCCCTGACATTGCAATTTGAAAGATCAAAGCCCCAATGGCAAATCT
** * * * * *
37370744 TACTTTCCTA-GC-ATTGTAGTGGAACAGATTGAAGCTACAACAGTGGATCTTACTTCCCTGACA
129 TA-TTTCC-AGGCGA-TACAGCGGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * *
37370807 TTGCAGTTTAAAAGATCGAAGCCACAACGGCCAATTTTACTTTCAAGCGATGCAACGGAACAGAT
191 TTGCAATTTAAAAGATCGAAGCCACAACGGCCAATCTTACTTTCAAGCAATGCAACGGAACAGAT
* * *
37370872 TGAAGCTACAACGGCGAATCTCACTTCCCCGACATTACAATTC
256 TGAAGCTACAACGACAAATCTCACTTCCCCGACATTACAATTA
* * * * * **
37370915 AAAAGATTGAGGCCACAACAGCAAATCTTACTTTCCTAGCATTGCAGTGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCCACAACAGCAAATCTTACTTCCCTAGCAGTGCAATGAAACAGATCAAAGCTA
*
37370980 CAACAGCGGATCTTACTTCCCTGACATTGCAATTTGAAAGATCAAAGCCCCAATGGCAAATCTTA
66 CAACAGCGGATCTAACTTCCCTGACATTGCAATTTGAAAGATCAAAGCCCCAATGGCAAATCTTA
37371045 TTTCCAGGCGATACAGCGGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCA
131 TTTCCAGGCGATACAGCGGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCA
* ** * *
37371110 ATTTGAAAGATCGAAGCCACAACGGTGAATCTTA-TTTCCAGGCAATGCAGCGGAACAGATTGAA
196 ATTTAAAAGATCGAAGCCACAACGGCCAATCTTACTTT-CAAGCAATGCAACGGAACAGATTGAA
* ** *
37371174 GCTACGACGACAAATCTCGTTTCCCCGACATTGCAATTA
260 GCTACAACGACAAATCTCACTTCCCCGACATTACAATTA
* * ** * *
37371213 AAAAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGTGGTGTAATGAAATAGATCAAAGCT
1 AAAAGATTGAAGCCACAACAGCAAATCTTACTTCCCTAGCAGTGCAATGAAACAGATCAAAGCT
37371277 GCGACGGCGA
Statistics
Matches: 301, Mismatches: 56, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
297 4 0.01
298 189 0.63
299 107 0.36
300 1 0.00
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (298 bp):
AAAAGATTGAAGCCACAACAGCAAATCTTACTTCCCTAGCAGTGCAATGAAACAGATCAAAGCTA
CAACAGCGGATCTAACTTCCCTGACATTGCAATTTGAAAGATCAAAGCCCCAATGGCAAATCTTA
TTTCCAGGCGATACAGCGGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCA
ATTTAAAAGATCGAAGCCACAACGGCCAATCTTACTTTCAAGCAATGCAACGGAACAGATTGAAG
CTACAACGACAAATCTCACTTCCCCGACATTACAATTA
Found at i:37371621 original size:44 final size:44
Alignment explanation
Indices: 37371572--37371661 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
37371562 CTAAAACCAC
* * *
37371572 AAATCTCGTCCCCCTAAAATCGCAGCAGAGTGGATTAAAGTTAT
1 AAATCTCATCCCCCCAAAATCGCAGCAGAGTGGATTAAAGTAAT
* * * **
37371616 AAATCTCATCCCCCCGAAGTTGCAGTGGAGTGGATTAAAGTAAT
1 AAATCTCATCCCCCCAAAATCGCAGCAGAGTGGATTAAAGTAAT
37371660 AA
1 AA
37371662 GATCGAGTGG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (44 bp):
AAATCTCATCCCCCCAAAATCGCAGCAGAGTGGATTAAAGTAAT
Found at i:37373127 original size:3 final size:3
Alignment explanation
Indices: 37373119--37373195 Score: 82
Period size: 3 Copynumber: 25.3 Consensus size: 3
37373109 TGTTTAATTA
* * * * *
37373119 ATT ATT ATT ATT ATT ATT ATT ATT ATT CTT ATT ATC ATT ACT ATT CTA
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
37373167 ATT ATT ACT ACT ATT ATT AATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT -ATT ATT ATT A
37373196 GCTTTATTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
3 58 0.95
4 3 0.05
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:37375022 original size:24 final size:24
Alignment explanation
Indices: 37374993--37375045 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
37374983 AATTCGTGGT
* * *
37374993 TAAATAAATCATGCTAGTAAATGC
1 TAAATAAATCATACTAATAAATAC
* *
37375017 TAAATATATTATACTAATAAATAC
1 TAAATAAATCATACTAATAAATAC
37375041 TAAAT
1 TAAAT
37375046 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.51, C:0.09, G:0.06, T:0.34
Consensus pattern (24 bp):
TAAATAAATCATACTAATAAATAC
Found at i:37384104 original size:21 final size:22
Alignment explanation
Indices: 37384060--37384104 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
37384050 GTGCTAAAAA
37384060 TTTGTTTTCGAATCAAATTTTT
1 TTTGTTTTCGAATCAAATTTTT
*
37384082 TTTGTTTTTGAATCAAATTTTT
1 TTTGTTTTCGAATCAAATTTTT
37384104 T
1 T
37384105 CCAAACCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.07, G:0.09, T:0.62
Consensus pattern (22 bp):
TTTGTTTTCGAATCAAATTTTT
Found at i:37386597 original size:32 final size:32
Alignment explanation
Indices: 37386560--37386638 Score: 104
Period size: 32 Copynumber: 2.5 Consensus size: 32
37386550 GGCCGCTAAT
*
37386560 AAATGTCACATCATCATCGATTGCTAATGTGG
1 AAATGTCACATCATCATCAATTGCTAATGTGG
**
37386592 AAATGTCATGTCATCATCAATTGCTAATGTGG
1 AAATGTCACATCATCATCAATTGCTAATGTGG
* * *
37386624 CATTGCCACATCATC
1 AAATGTCACATCATC
37386639 GCCTATTGTC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (32 bp):
AAATGTCACATCATCATCAATTGCTAATGTGG
Found at i:37386851 original size:40 final size:41
Alignment explanation
Indices: 37386807--37386884 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 41
37386797 AACATTAAAA
* *
37386807 TTTATAATAA-TTATTAAAA-ATTAATTAAAAACCATAATTT
1 TTTATAA-AATTTATAAAAACATTAATTAAAAACAATAATTT
*
37386847 TTTATAAAATTTATAAAAACATTTATTAAAAACAATAA
1 TTTATAAAATTTATAAAAACATTAATTAAAAACAATAA
37386885 AAAGTTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 2 0.06
40 15 0.45
41 16 0.48
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (41 bp):
TTTATAAAATTTATAAAAACATTAATTAAAAACAATAATTT
Found at i:37387736 original size:43 final size:43
Alignment explanation
Indices: 37387675--37387762 Score: 149
Period size: 43 Copynumber: 2.0 Consensus size: 43
37387665 TAGGGTTGGA
* *
37387675 AGTGATACTTTTAAGAAAAATTCATCTCATAATTATTTTGATT
1 AGTGATACTTTTAAGAAAAATACATCTCATAACTATTTTGATT
*
37387718 AGTGATACTTTTAAGAAAAATACATTTCATAACTATTTTGATT
1 AGTGATACTTTTAAGAAAAATACATCTCATAACTATTTTGATT
37387761 AG
1 AG
37387763 GTAATAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (43 bp):
AGTGATACTTTTAAGAAAAATACATCTCATAACTATTTTGATT
Found at i:37391338 original size:29 final size:26
Alignment explanation
Indices: 37391298--37391356 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 26
37391288 AAACCCTTTT
37391298 TTTTTTAAATTTACCGAAATGGACCGA
1 TTTTTTAAATTTACCGAAATGGACC-A
* *
37391325 TTTTTTAATTATTTACCGGAATGGGCCA
1 TTTTTTAA--ATTTACCGAAATGGACCA
37391353 TTTT
1 TTTT
37391357 CCCGGAAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 8 0.29
28 5 0.18
29 15 0.54
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (26 bp):
TTTTTTAAATTTACCGAAATGGACCA
Found at i:37391590 original size:22 final size:22
Alignment explanation
Indices: 37391565--37391633 Score: 111
Period size: 22 Copynumber: 3.1 Consensus size: 22
37391555 ACAAATCCTA
*
37391565 TCTCAATTTCATTCAAAAATTC
1 TCTCAATTTCCTTCAAAAATTC
*
37391587 TCTCAAATTCCTTCAAAAATTC
1 TCTCAATTTCCTTCAAAAATTC
*
37391609 TCTCAATTTCCTTCCAAAATTC
1 TCTCAATTTCCTTCAAAAATTC
37391631 TCT
1 TCT
37391634 TAAACTCTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.41
Consensus pattern (22 bp):
TCTCAATTTCCTTCAAAAATTC
Found at i:37391677 original size:21 final size:22
Alignment explanation
Indices: 37391638--37391679 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
37391628 TTCTCTTAAA
37391638 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
37391660 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCCAAAA
37391680 ATATCTCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:37391686 original size:22 final size:22
Alignment explanation
Indices: 37391639--37391688 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
37391629 TCTCTTAAAC
* *
37391639 TCTCAAATTCCTTCCAAAATCC
1 TCTCAAATTCCTTCAAAAATCA
*
37391661 TCTCAATTTCCTTCAAAAAAT-A
1 TCTCAAATTCCTTC-AAAAATCA
37391683 TCTCAA
1 TCTCAA
37391689 CTCCATATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.36, C:0.30, G:0.00, T:0.34
Consensus pattern (22 bp):
TCTCAAATTCCTTCAAAAATCA
Found at i:37391780 original size:23 final size:23
Alignment explanation
Indices: 37391735--37391780 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
37391725 TTTTTAAGAA
* *
37391735 AATTTTAAATATTTTTATTTTTT
1 AATTTTAAATATTTTAATATTTT
37391758 AATTTTAAA-ATTTTAAATATTTT
1 AATTTTAAATATTTT-AATATTTT
37391781 CAACAATGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
AATTTTAAATATTTTAATATTTT
Done.