Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 156 of 190
Found at i:45525588 original size:22 final size:22
Alignment explanation
Indices: 45525563--45525606 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
45525553 ATAAGAAAAC
45525563 GATGGAAGAAGAAGCAGAAATT
1 GATGGAAGAAGAAGCAGAAATT
45525585 GATGGAAGAAGAAGCAGAAATT
1 GATGGAAGAAGAAGCAGAAATT
45525607 ACCTCTGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.05, G:0.32, T:0.14
Consensus pattern (22 bp):
GATGGAAGAAGAAGCAGAAATT
Found at i:45527504 original size:16 final size:16
Alignment explanation
Indices: 45527479--45527517 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
45527469 TTGGTTCGCT
* *
45527479 GTAATGGAATAGAGGC
1 GTAATAGAATAGAAGC
45527495 GTAATAGAATAGAAGC
1 GTAATAGAATAGAAGC
45527511 GTAATAG
1 GTAATAG
45527518 GTAATTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.44, C:0.05, G:0.31, T:0.21
Consensus pattern (16 bp):
GTAATAGAATAGAAGC
Found at i:45527591 original size:39 final size:42
Alignment explanation
Indices: 45527500--45527602 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 42
45527490 GAGGCGTAAT
* * *
45527500 AGAATAGAAGCGTAATAGGTAATTCTTTTGTTTGGTTGAATG
1 AGAATAGAGGTGTAATAGGTAATTCTTGTGTTTGGTTGAATG
45527542 TAATGAAATAGAGGTGTAAT-GGT-ATTCTTGTGTTTGGTTGAATG
1 --A-G-AATAGAGGTGTAATAGGTAATTCTTGTGTTTGGTTGAATG
45527586 -GAATAGAGGTGTAATAG
1 AGAATAGAGGTGTAATAG
45527603 CATAAGGAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
39 14 0.26
40 2 0.04
44 21 0.40
45 4 0.08
46 12 0.23
ACGTcount: A:0.31, C:0.03, G:0.29, T:0.37
Consensus pattern (42 bp):
AGAATAGAGGTGTAATAGGTAATTCTTGTGTTTGGTTGAATG
Found at i:45527755 original size:16 final size:16
Alignment explanation
Indices: 45527747--45527783 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 16
45527737 TAATTGTTAT
45527747 AAAATATAATTTAATAA
1 AAAATATAATTTAAT-A
45527764 AAATATATAATTTAATA
1 AAA-ATATAATTTAATA
45527781 AAA
1 AAA
45527784 TTGTTAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAATATAATTTAATA
Found at i:45527878 original size:120 final size:109
Alignment explanation
Indices: 45527731--45527988 Score: 354
Period size: 120 Copynumber: 2.3 Consensus size: 109
45527721 TAATCATATT
* *
45527731 TTAACATAATTGTTATAAAATATAATTTAATAAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTAA-ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAA---TT-AT---T
* *
45527796 ATTCTTATATGAATTTACTAATAAAATCATAATATCTAATACTATAAAATATAAT
58 ATTCTTATATGAATTTAC---TAAAATCATAATATATAATACTATAAAATATAAA
* *
45527851 TTACAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAATTCTTATTCTTA
1 TTA-AATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTATTCTTA
45527916 TATGAATTTACTAAAATCATAATATATAATACTATAAAATATAAA
65 TATGAATTTACTAAAATCATAATATATAATACTATAAAATATAAA
45527961 TTAAATAATTATTATTAAATATAATTTA
1 TTAAATAATTATTATTAAATATAATTTA
45527989 TAATCTACTT
Statistics
Matches: 131, Mismatches: 6, Indels: 13
0.87 0.04 0.09
Matches are distributed among these distances:
109 25 0.19
110 35 0.27
113 19 0.15
116 1 0.01
117 2 0.02
120 48 0.37
121 1 0.01
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.43
Consensus pattern (109 bp):
TTAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTATTCTTAT
ATGAATTTACTAAAATCATAATATATAATACTATAAAATATAAA
Found at i:45529452 original size:49 final size:49
Alignment explanation
Indices: 45529380--45529483 Score: 154
Period size: 49 Copynumber: 2.1 Consensus size: 49
45529370 AAAAAAAAAC
* * ** * *
45529380 AAATTAAAATTTAGTTTAATATCATGAATCAAAAGGTGAACACTTTATA
1 AAATTAAAATTGAGTTCAATATCATGAATCAAAAACTCAACACTGTATA
45529429 AAATTAAAATTGAGTTCAATATCATGAATCAAAAACTCAACACTGTATA
1 AAATTAAAATTGAGTTCAATATCATGAATCAAAAACTCAACACTGTATA
45529478 AAATTA
1 AAATTA
45529484 TAACACATGA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.32
Consensus pattern (49 bp):
AAATTAAAATTGAGTTCAATATCATGAATCAAAAACTCAACACTGTATA
Found at i:45532231 original size:18 final size:19
Alignment explanation
Indices: 45532198--45532238 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
45532188 ATATATAAAA
45532198 ATACCAATAAAAATTATCCT
1 ATACCAAT-AAAATTATCCT
45532218 ATACCAAT-AAATTATCCT
1 ATACCAATAAAATTATCCT
45532236 ATA
1 ATA
45532239 AAGCCCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 13 0.62
20 8 0.38
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.32
Consensus pattern (19 bp):
ATACCAATAAAATTATCCT
Found at i:45533754 original size:36 final size:36
Alignment explanation
Indices: 45533713--45533903 Score: 238
Period size: 36 Copynumber: 5.0 Consensus size: 36
45533703 GGTAGCTTTA
45533713 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
45533749 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGAT-A-----AG---T
45533794 AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
45533831 GTTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
45533867 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
45533903 G
1 G
45533904 GTAGCTTAGC
Statistics
Matches: 137, Mismatches: 8, Indels: 20
0.83 0.05 0.12
Matches are distributed among these distances:
36 99 0.72
37 2 0.01
40 2 0.01
42 2 0.01
45 2 0.01
46 30 0.22
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.29
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:45533814 original size:82 final size:82
Alignment explanation
Indices: 45533677--45533867 Score: 337
Period size: 82 Copynumber: 2.3 Consensus size: 82
45533667 TTTGAGTACT
*
45533677 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
45533742 GATAAGTGCTACACTTA
66 GATAAGTGCTACACTTA
*
45533759 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
* *
45533824 GATAAGTGTTATACTTA
66 GATAAGTGCTACACTTA
*
45533841 TCTGATCAAGTGAAAAAGTGATAAGTG
1 TCTGATCAAGAGAAAAAGTGATAAGTG
45533868 CTATACTTAT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 104 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.29
Consensus pattern (82 bp):
TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
GATAAGTGCTACACTTA
Found at i:45537893 original size:19 final size:16
Alignment explanation
Indices: 45537849--45537893 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 16
45537839 ACTTTCCCTC
45537849 AAACTTTTATTCCCCA
1 AAACTTTTATTCCCCA
45537865 AAACTTTTTATTTTCCCCA
1 AAAC-TTTTA--TTCCCCA
45537884 TAAACTTTTA
1 -AAACTTTTA
45537894 CTTCTCACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.16
17 5 0.20
19 12 0.48
20 4 0.16
ACGTcount: A:0.31, C:0.24, G:0.00, T:0.44
Consensus pattern (16 bp):
AAACTTTTATTCCCCA
Found at i:45542013 original size:2 final size:2
Alignment explanation
Indices: 45542006--45542037 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
45541996 TGATAAAGTG
45542006 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45542038 ACAAGAGGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45556424 original size:6 final size:6
Alignment explanation
Indices: 45556413--45556441 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
45556403 GTAGTTATAC
45556413 TATATT TATATT TATATT TATATT TATAT
1 TATATT TATATT TATATT TATATT TATAT
45556442 AAGAAAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TATATT
Found at i:45558767 original size:10 final size:10
Alignment explanation
Indices: 45558745--45558782 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
45558735 TAGGGTATTT
45558745 TACAAAAATAA
1 TACAAAAA-AA
45558756 TACAAAAAAA
1 TACAAAAAAA
45558766 TA-AAAAAAA
1 TACAAAAAAA
45558775 TACCAAAA
1 TA-CAAAA
45558783 TAGTATTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.36
10 4 0.16
11 12 0.48
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.13
Consensus pattern (10 bp):
TACAAAAAAA
Found at i:45558869 original size:32 final size:32
Alignment explanation
Indices: 45558833--45558899 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
45558823 ACATGACAGC
*
45558833 CTGGTGGAGGGCCTGCCACAGACGACACTGGA
1 CTGGTGGAGGGCCTGCCACAGACGACACCGGA
* *
45558865 CTGGTGGAGGGCCTGCTACAGGCGACACCGGA
1 CTGGTGGAGGGCCTGCCACAGACGACACCGGA
45558897 CTG
1 CTG
45558900 AAATGTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.19, C:0.28, G:0.39, T:0.13
Consensus pattern (32 bp):
CTGGTGGAGGGCCTGCCACAGACGACACCGGA
Found at i:45562890 original size:3 final size:3
Alignment explanation
Indices: 45562882--45562910 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
45562872 GGTGAATTTC
45562882 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
45562911 TTTCCAACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:45574502 original size:153 final size:149
Alignment explanation
Indices: 45574223--45574506 Score: 347
Period size: 153 Copynumber: 1.9 Consensus size: 149
45574213 AATTAGTCTA
* * * *
45574223 AAACTTTAGTTAAAAGTCAATAAAAAAGTACTACATGTCATTCATTGAGCTAATGTGCCATGTAG
1 AAACTTTAGTCAAAAGTCAATAAAAAAATACTACATGTCAATCAATGAGCTAATGTGCCATGTAG
* * * * *** *
45574288 TAATTTGTTAAAAGAAAACGAAAATGTTAAGAACGGTAAATAATTCGCACAATCATCTTATTTAA
66 CAATCTGTTAAAAGAAAACAAAAATGTTAACAACAACAAATAATTCGCACAATCATATTATTTAA
45574353 ATTTTATAGAGTGATCACT
131 ATTTTATAGAGTGATCACT
45574372 AAACTTTAGTCAAAAGTCAATAAAAAAATA-TCACATATCAGTCAATCAATGAGCTAATGTGCCA
1 AAACTTTAGTCAAAAGTCAATAAAAAAATACT-AC--AT--GTCAATCAATGAGCTAATGTGCCA
* * * * *
45574436 TGTAGCAATCTGTTAAAA-ATAGATAAAAATGTTATCAACAACAAATAATTCGTACAATTATATT
61 TGTAGCAATCTGTTAAAAGA-AAACAAAAATGTTAACAACAACAAATAATTCGCACAATCATATT
45574500 ATTTAAA
125 ATTTAAA
45574507 GTGATTAAAT
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
148 1 0.01
149 30 0.27
151 2 0.02
152 1 0.01
153 78 0.70
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (149 bp):
AAACTTTAGTCAAAAGTCAATAAAAAAATACTACATGTCAATCAATGAGCTAATGTGCCATGTAG
CAATCTGTTAAAAGAAAACAAAAATGTTAACAACAACAAATAATTCGCACAATCATATTATTTAA
ATTTTATAGAGTGATCACT
Found at i:45574695 original size:6 final size:6
Alignment explanation
Indices: 45574684--45574709 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
45574674 TCGTAAACAG
45574684 GCCGAC GCCGAC GCCGAC GCCGAC GC
1 GCCGAC GCCGAC GCCGAC GCCGAC GC
45574710 GGCTCAGGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.50, G:0.35, T:0.00
Consensus pattern (6 bp):
GCCGAC
Found at i:45580571 original size:27 final size:27
Alignment explanation
Indices: 45580528--45580591 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
45580518 TGTTTTAAAT
45580528 AATT-AAAAAAGCATTAAAATTATTTTAA
1 AATTAAAAAAAG-ATTAAAATT-TTTTAA
**
45580556 AATTAAAAAAAG-TTAATCTTTTTTAA
1 AATTAAAAAAAGATTAAAATTTTTTAA
*
45580582 ATTTAAAAAA
1 AATTAAAAAA
45580592 TTAATTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 15 0.47
27 6 0.19
28 4 0.12
29 7 0.22
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (27 bp):
AATTAAAAAAAGATTAAAATTTTTTAA
Found at i:45580584 original size:25 final size:24
Alignment explanation
Indices: 45580550--45580596 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
45580540 ATTAAAATTA
45580550 TTTTAAAATTAAAAAAAGTTAATCT
1 TTTTAAAATTAAAAAAA-TTAATCT
* *
45580575 TTTTTAAATTTAAAAAATTAAT
1 TTTTAAAATTAAAAAAATTAAT
45580597 TAAAAGCTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (24 bp):
TTTTAAAATTAAAAAAATTAATCT
Found at i:45592783 original size:26 final size:26
Alignment explanation
Indices: 45592750--45592802 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
45592740 AACATTTCAT
*
45592750 TTTAAAATA-TAAAATTATTATAAAAA
1 TTTAAAATATTAAAA-TATTAAAAAAA
*
45592776 TTTAAAATATTCAAATATTAAAAAAA
1 TTTAAAATATTAAAATATTAAAAAAA
45592802 T
1 T
45592803 ATTTTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
TTTAAAATATTAAAATATTAAAAAAA
Found at i:45597338 original size:46 final size:45
Alignment explanation
Indices: 45597320--45597413 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 45
45597310 TGACAAGTGG
* * *
45597320 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGTGAC
45597366 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGTGAC
45597412 AA
1 AA
45597414 GTGGAAAGTG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (45 bp):
AAAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGTGAC
Found at i:45597339 original size:52 final size:51
Alignment explanation
Indices: 45597268--45597581 Score: 333
Period size: 52 Copynumber: 6.1 Consensus size: 51
45597258 ATCAAGTGAC
* *
45597268 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-G
* * *
45597320 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
45597366 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-------AAGT-G
* *
45597425 AAAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * *
45597476 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * *
45597523 AAAGTGATAAGTAATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGTG
45597575 ATAAGTG
1 A-AAGTG
45597582 GCTACACTTA
Statistics
Matches: 224, Mismatches: 17, Indels: 41
0.79 0.06 0.15
Matches are distributed among these distances:
46 85 0.38
51 1 0.00
52 89 0.40
53 5 0.02
59 44 0.20
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:45597374 original size:98 final size:98
Alignment explanation
Indices: 45597254--45597581 Score: 398
Period size: 98 Copynumber: 3.3 Consensus size: 98
45597244 TTTGAGTACT
* *
45597254 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
45597319 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTACACTTA
45597352 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-----
*
45597417 GAAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
61 --AAGTGGAAAGTGATAAGTAATAGCTTCGGCTACACTTA
* * * *
45597457 TTTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
**
45597522 C------AAAGTGATAAGTAATAGCTTTAGCTACACTTA
60 CAAGTGGAAAGTGATAAGTAATAGCTTCGGCTACACTTA
*
45597555 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
45597582 GCTACACTTA
Statistics
Matches: 204, Mismatches: 13, Indels: 32
0.82 0.05 0.13
Matches are distributed among these distances:
92 13 0.06
98 99 0.49
105 49 0.24
111 43 0.21
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTACACTTA
Found at i:45597482 original size:157 final size:157
Alignment explanation
Indices: 45597268--45597570 Score: 516
Period size: 157 Copynumber: 1.9 Consensus size: 157
45597258 ATCAAGTGAC
* * *
45597268 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* *
45597333 ATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTAATAGCTTCAGCTACACTTA
*
45597398 TCTGATCAAGTGACAAGTGGAAAGTGG
131 TCTGATCAAGAGACAAGTGGAAAGTGG
* * *
45597425 AAAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
*
45597490 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTAATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTAATAGCTTCAGCTACACTTA
45597555 TCTGATCAAGAGACAA
131 TCTGATCAAGAGACAA
45597571 AGTGATAAGT
Statistics
Matches: 136, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
157 136 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (157 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTAATAGCTTCAGCTACACTTA
TCTGATCAAGAGACAAGTGGAAAGTGG
Found at i:45597554 original size:46 final size:43
Alignment explanation
Indices: 45597477--45597689 Score: 196
Period size: 37 Copynumber: 5.3 Consensus size: 43
45597467 TGACAAGTGA
*
45597477 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGT-ATAGCTT--GCTACACTTATCTGATCAAGAGAC
45597523 AAAGTGATAAGTAATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGT-ATAGC-TT-GCTACACTTATCTGATCAAGAGAC
45597569 AAAGTGATAAG--T-G---GCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTATAGCTTGCTACACTTATCTGATCAAGAGAC
*
45597606 AAAGTGATAAG--T-G---GCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTATAGCTTGCTACACTTATCTGATCAAGAGAC
* *
45597643 AAAGTGAT-AG----G-TGGCTACACTTATCTGATC-AGGGAC
1 AAAGTGATAAGTATAGCTTGCTACACTTATCTGATCAAGAGAC
45597679 -AAGTGATAAGT
1 AAAGTGATAAGT
45597690 GATCATACGT
Statistics
Matches: 156, Mismatches: 6, Indels: 19
0.86 0.03 0.10
Matches are distributed among these distances:
35 8 0.05
36 8 0.05
37 85 0.54
42 1 0.01
43 1 0.01
46 51 0.33
47 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (43 bp):
AAAGTGATAAGTATAGCTTGCTACACTTATCTGATCAAGAGAC
Found at i:45597595 original size:37 final size:37
Alignment explanation
Indices: 45597545--45597690 Score: 251
Period size: 37 Copynumber: 4.0 Consensus size: 37
45597535 AATAGCTTTA
45597545 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
45597582 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
45597619 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
45597656 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
45597691 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:45602607 original size:16 final size:16
Alignment explanation
Indices: 45602583--45602622 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
45602573 AAAATTGGAA
* *
45602583 ATATGTAAGCGTGTAT
1 ATATATAAGCATGTAT
*
45602599 ATATATAAGTATGTAT
1 ATATATAAGCATGTAT
45602615 ATATATAA
1 ATATATAA
45602623 CAAAATCTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (16 bp):
ATATATAAGCATGTAT
Found at i:45602687 original size:3 final size:3
Alignment explanation
Indices: 45602681--45602755 Score: 89
Period size: 3 Copynumber: 25.0 Consensus size: 3
45602671 TTGATTAGCT
* * ***
45602681 TAA TAA TAA TAA TAA TAA TAA -AA TTGA TTA GCT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
45602726 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
45602756 AACGAGACTA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.03
3 59 0.95
4 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:45602694 original size:33 final size:33
Alignment explanation
Indices: 45602652--45602734 Score: 166
Period size: 33 Copynumber: 2.5 Consensus size: 33
45602642 TAAATGGGTA
45602652 AATAATAATAATAATAAAATTGATTAGCTTAAT
1 AATAATAATAATAATAAAATTGATTAGCTTAAT
45602685 AATAATAATAATAATAAAATTGATTAGCTTAAT
1 AATAATAATAATAATAAAATTGATTAGCTTAAT
45602718 AATAATAATAATAATAA
1 AATAATAATAATAATAA
45602735 TAATAATAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (33 bp):
AATAATAATAATAATAAAATTGATTAGCTTAAT
Found at i:45604202 original size:43 final size:43
Alignment explanation
Indices: 45604163--45604259 Score: 185
Period size: 43 Copynumber: 2.3 Consensus size: 43
45604153 GTCTTGTTGC
45604163 TTCAATCCACTCCACCGCACTTCAAAGAGATACGGCTTGTAGT
1 TTCAATCCACTCCACCGCACTTCAAAGAGATACGGCTTGTAGT
*
45604206 TTCAATCCACTCCACCGCACTTCAAAGAGATACGGTTTGTAGT
1 TTCAATCCACTCCACCGCACTTCAAAGAGATACGGCTTGTAGT
45604249 TTCAATCCACT
1 TTCAATCCACT
45604260 GCTACGTCAG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (43 bp):
TTCAATCCACTCCACCGCACTTCAAAGAGATACGGCTTGTAGT
Found at i:45604494 original size:98 final size:98
Alignment explanation
Indices: 45604325--45604504 Score: 299
Period size: 98 Copynumber: 1.8 Consensus size: 98
45604315 GAGATAAGAC
*
45604325 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTG
1 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTG
45604390 CAACTTCAGGGAGATAGAATTATCGGCTTCAAT
66 CAACTTCAGGGAGATAGAATTATCGGCTTCAAT
* * *
45604423 CTGATGTGATCTACTCTACTATAACTTCAGAGAGATAAGATCCT-TTATTTTAATCCGCTCCACT
1 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGAT-CTGTGATTTTAATCCACTCCACT
*
45604487 GTAACTTCAGGGAGATAG
65 GCAACTTCAGGGAGATAG
45604505 GATAGTGTCT
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
98 74 0.97
99 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (98 bp):
CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTG
CAACTTCAGGGAGATAGAATTATCGGCTTCAAT
Found at i:45604540 original size:43 final size:43
Alignment explanation
Indices: 45604474--45604971 Score: 237
Period size: 44 Copynumber: 11.4 Consensus size: 43
45604464 CCTTTATTTT
* * * * *
45604474 AATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTG
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCACTGGCTTC
* * *
45604517 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCACTGGCTTC
* *
45604561 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATC---ACTGGCTTC
** * * * *
45604607 GGTCTACTCCACTGTAACCTCAGGGAAATAAGA-CA-T-GATGC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCACTGGCTTC
* ** * * * *** *
45604648 GATCTATTCTACTGTAACTTCAGAGAGATGAGATC-CTTTATTTT
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCAC-TGGCTTC
* * * * * *
45604692 AATCCGCTCCACTGTAACTTCAGCGAGATAGGAT-AGTGTCTTG
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCACTGGCTTC
* * *
45604735 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCACTGGCTTC
* * * *
45604779 AATCTGCTCCACCGTAACCTCAGGGAGATAAGATTTGAAAT-TCTTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGA--T-CACTGGCTTC
* * * *
45604825 GATCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCACTGGCTTC
* * ** * *** *
45604866 GATCTACTCTGCTGTAACTTCAGAGAGATAAGATC-CTTTATTTT
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCAC-TGGCTTC
* * * *
45604910 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCACTGGCTTC
45604954 AATCTGCTCCACTGTAAC
1 AATCTGCTCCACTGTAAC
45604972 CAAATATTCG
Statistics
Matches: 344, Mismatches: 89, Indels: 44
0.72 0.19 0.09
Matches are distributed among these distances:
40 2 0.01
41 59 0.17
42 4 0.01
43 61 0.18
44 145 0.42
45 3 0.01
46 68 0.20
47 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
AATCTGCTCCACTGTAACTCAGGGAGATAAGATCACTGGCTTC
Found at i:45604685 original size:218 final size:218
Alignment explanation
Indices: 45604424--45604943 Score: 925
Period size: 218 Copynumber: 2.4 Consensus size: 218
45604414 GGCTTCAATC
* *
45604424 TGATGTGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
45604489 AACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC
66 AACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC
* *
45604554 TGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCAC
131 TGGCTTCAATCTGCTCCACCGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTACTCCAC
45604619 TGTAACCTCAGGGAAATAAGACA
196 TGTAACCTCAGGGAAATAAGACA
* *
45604642 TGATGCGATCTATTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
*
45604707 AACTTCAGCGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC
66 AACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC
*
45604772 TGGCTTCAATCTGCTCCACCGTAACCTCAGGGAGATAAGATTTGAAATTCTTCGATCTACTCCAC
131 TGGCTTCAATCTGCTCCACCGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTACTCCAC
* *
45604837 TGTAACCTCAGGGAGATAAGACC
196 TGTAACCTCAGGGAAATAAGACA
*
45604860 TGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
45604925 AA-TCTCAGGGAGATAGGAT
66 AACT-TCAGGGAGATAGGAT
45604944 TACTAGCTTC
Statistics
Matches: 287, Mismatches: 14, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
217 1 0.00
218 286 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (218 bp):
TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGT
AACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC
TGGCTTCAATCTGCTCCACCGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTACTCCAC
TGTAACCTCAGGGAAATAAGACA
Found at i:45613462 original size:6 final size:6
Alignment explanation
Indices: 45613429--45613630 Score: 119
Period size: 6 Copynumber: 31.8 Consensus size: 6
45613419 TAAAGCAACT
* * * *
45613429 AAAACA AAATTA AAAAGA AAGATAA AAAATA AAAA-A ATAAATTTA AAATATA
1 AAAATA AAAATA AAAATA AAAAT-A AAAATA AAAATA A-AAA--TA AAA-ATA
** * *
45613481 AGTATA AGAATA ATAAA-A AATAA-A AAAATA AAAA-A ATAA-A AAAATAA
1 AAAATA AAAATA A-AAATA AA-AATA AAAATA AAAATA AAAATA AAAAT-A
*
45613528 AAAATA AAAAAA AAAATAA AAAATA GTAAAATAA TAAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAAT-A AAAATA --AAAAT-A -AAAATA AAAATA AAAATA
*
45613581 AAAATA AAAA-A TATAATA GAAAATAA AAAATA AAAATAA AAAATA AAAAT
1 AAAATA AAAATA -AAAATA -AAAAT-A AAAATA AAAAT-A AAAATA AAAAT
45613631 GGGGTGGCTT
Statistics
Matches: 159, Mismatches: 18, Indels: 38
0.74 0.08 0.18
Matches are distributed among these distances:
5 14 0.09
6 88 0.55
7 39 0.25
8 14 0.09
9 4 0.03
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:45613476 original size:19 final size:19
Alignment explanation
Indices: 45613409--45613629 Score: 132
Period size: 19 Copynumber: 11.8 Consensus size: 19
45613399 AAGTTGAAGA
* *
45613409 AAATAAAAAATAAAGCAACT
1 AAATAAAAAATAAA-AAAAT
*
45613429 AAA-ACAAAATTAAAAAGAA-
1 AAATA-AAAAATAAAAA-AAT
*
45613448 AGATAAAAAATAAAAAAAT
1 AAATAAAAAATAAAAAAAT
*
45613467 AAATTTAAAATATAAGTATAAGAAT
1 AAA--TAAAAAATAA--A-AA-AAT
45613492 -AATAAAAAATAAAAAAAT
1 AAATAAAAAATAAAAAAAT
45613510 --A-AAAAAAT---AAAA-
1 AAATAAAAAATAAAAAAAT
*
45613522 AAATAAAAAATAAAAAAAA
1 AAATAAAAAATAAAAAAAT
**
45613541 AAATAAAAAATAGTAAAAT
1 AAATAAAAAATAAAAAAAT
45613560 -AAT--AAAATAAAAATAA-
1 AAATAAAAAATAAAAA-AAT
45613576 AAAT-AAAAAT-AAAAAAT
1 AAATAAAAAATAAAAAAAT
* *
45613593 ATAATAGAAAATAAAAAATAA
1 A-AATAAAAAATAAAAAA-AT
45613614 AAATAAAAAATAAAAA
1 AAATAAAAAATAAAAA
45613630 TGGGGTGGCT
Statistics
Matches: 160, Mismatches: 16, Indels: 50
0.71 0.07 0.22
Matches are distributed among these distances:
13 4 0.03
14 1 0.01
15 7 0.04
16 17 0.11
17 11 0.07
18 20 0.12
19 39 0.24
20 33 0.21
21 11 0.07
22 9 0.06
23 1 0.01
24 4 0.03
25 3 0.02
ACGTcount: A:0.78, C:0.01, G:0.03, T:0.17
Consensus pattern (19 bp):
AAATAAAAAATAAAAAAAT
Found at i:45613501 original size:24 final size:23
Alignment explanation
Indices: 45613473--45613629 Score: 120
Period size: 20 Copynumber: 7.1 Consensus size: 23
45613463 AAATAAATTT
** *
45613473 AAAATATAAGTATAAGAATAATAA
1 AAAATATAAAAATAA-AAAAATAA
*
45613497 AAAATAAAAAAATAAAAAAATAA
1 AAAATATAAAAATAAAAAAATAA
*
45613520 AAAA-ATAAAAA-ATAAAAA-AA
1 AAAATATAAAAATAAAAAAATAA
**
45613540 AAAATA-AAAAATAGTAAAATAA
1 AAAATATAAAAATAAAAAAATAA
*
45613562 TAAA-ATAAAAAT--AAAAAT-A
1 AAAATATAAAAATAAAAAAATAA
*
45613581 AAAATAAAAAATATAATAGAAAAT-A
1 AAAATATAAAA-ATAA-A-AAAATAA
45613606 AAAA-ATAAAAAT-AAAAAATAA
1 AAAATATAAAAATAAAAAAATAA
45613627 AAA
1 AAA
45613630 TGGGGTGGCT
Statistics
Matches: 109, Mismatches: 13, Indels: 25
0.74 0.09 0.17
Matches are distributed among these distances:
19 4 0.04
20 26 0.24
21 20 0.18
22 18 0.17
23 13 0.12
24 18 0.17
25 10 0.09
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (23 bp):
AAAATATAAAAATAAAAAAATAA
Found at i:45613504 original size:7 final size:7
Alignment explanation
Indices: 45613492--45613629 Score: 148
Period size: 7 Copynumber: 20.1 Consensus size: 7
45613482 GTATAAGAAT
45613492 AATAAAA
1 AATAAAA
45613499 AATAAAAA
1 AAT-AAAA
45613507 AATAAAAA
1 AAT-AAAA
45613515 AATAAAAA
1 AAT-AAAA
45613523 AATAAAA
1 AATAAAA
45613530 AAT-AAA
1 AATAAAA
45613536 AA-AAAA
1 AATAAAA
45613542 AATAAAA
1 AATAAAA
*
45613549 AATAGTAA
1 AATA-AAA
45613557 AATAATAA
1 AATAA-AA
45613565 AAT-AAA
1 AATAAAA
45613571 AAT-AAA
1 AATAAAA
45613577 AAT-AAA
1 AATAAAA
45613583 AATAAAA
1 AATAAAA
*
45613590 AAT--AT
1 AATAAAA
*
45613595 AATAGAA
1 AATAAAA
45613602 AATAAAA
1 AATAAAA
45613609 AAT-AAA
1 AATAAAA
45613615 AATAAAA
1 AATAAAA
45613622 AATAAAA
1 AATAAAA
45613629 A
1 A
45613630 TGGGGTGGCT
Statistics
Matches: 117, Mismatches: 5, Indels: 18
0.84 0.04 0.13
Matches are distributed among these distances:
5 4 0.03
6 33 0.28
7 46 0.39
8 34 0.29
ACGTcount: A:0.83, C:0.00, G:0.01, T:0.16
Consensus pattern (7 bp):
AATAAAA
Found at i:45613506 original size:1 final size:1
Alignment explanation
Indices: 45613495--45613629 Score: 63
Period size: 1 Copynumber: 135.0 Consensus size: 1
45613485 TAAGAATAAT
* * * * * * * ** *
45613495 AAAAAATAAAAAAATAAAAAAATAAAAAAATAAAAAATAAAAAAAAAAATAAAAAATAGTAAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * * * * * *
45613560 AATAAAATAAAAATAAAAATAAAAATAAAAAATATAATAGAAAATAAAAAATAAAAATAAAAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
45613625 AAAAA
1 AAAAA
45613630 TGGGGTGGCT
Statistics
Matches: 89, Mismatches: 45, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
1 89 1.00
ACGTcount: A:0.83, C:0.00, G:0.01, T:0.16
Consensus pattern (1 bp):
A
Found at i:45613558 original size:60 final size:60
Alignment explanation
Indices: 45613492--45613630 Score: 182
Period size: 60 Copynumber: 2.4 Consensus size: 60
45613482 GTATAAGAAT
* *
45613492 AATAA-AAAATAAAAAAATAAAAA-AATAA-AAAAATAAAAAATAAAAAAAAAAATAAAA
1 AATAATAAAATAATAAAATAAAAATAAAAATAAAAATAAAAAATAAAAAAAAAAATAAAA
* * * *
45613549 AATAGTAAAATAATAAAATAAAAATAAAAATAAAAATAAAAAATATAATAGAAAATAAAA
1 AATAATAAAATAATAAAATAAAAATAAAAATAAAAATAAAAAATAAAAAAAAAAATAAAA
45613609 AAT-A-AAAATAA-AAAATAAAAAT
1 AATAATAAAATAATAAAATAAAAAT
45613631 GGGGTGGCTT
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
57 15 0.21
58 24 0.33
59 4 0.06
60 29 0.40
ACGTcount: A:0.82, C:0.00, G:0.01, T:0.17
Consensus pattern (60 bp):
AATAATAAAATAATAAAATAAAAATAAAAATAAAAATAAAAAATAAAAAAAAAAATAAAA
Found at i:45613617 original size:50 final size:51
Alignment explanation
Indices: 45613489--45613630 Score: 173
Period size: 53 Copynumber: 2.7 Consensus size: 51
45613479 TAAGTATAAG
*
45613489 AATAATAAAAAATAAAAAAATAAAAA-AATAA-AAAAATAAAAAATAAAAAA
1 AATAATAAAAAAT-AAAAAATAAAAATAAAAATAAAAATAAAAAATAAAAAA
* *
45613539 AAAAATAAAAAATAGTAAAATAATAAAATAAAAATAAAAAT-AAAAATAAAAAA
1 AATAATAAAAAATA-AAAAAT-A-AAAATAAAAATAAAAATAAAAAATAAAAAA
* *
45613592 TATAATAGAAAATAAAAAATAAAAATAAAAAATAAAAAT
1 AATAATAAAAAATAAAAAATAAAAAT-AAAAATAAAAAT
45613631 GGGGTGGCTT
Statistics
Matches: 79, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
49 1 0.01
50 22 0.28
51 14 0.18
52 9 0.11
53 27 0.34
54 6 0.08
ACGTcount: A:0.82, C:0.00, G:0.01, T:0.17
Consensus pattern (51 bp):
AATAATAAAAAATAAAAAATAAAAATAAAAATAAAAATAAAAAATAAAAAA
Found at i:45617271 original size:5 final size:5
Alignment explanation
Indices: 45617263--45617332 Score: 74
Period size: 5 Copynumber: 14.2 Consensus size: 5
45617253 TATTTAATTT
* * *
45617263 ATATA ATATA ATACA ATACA ATATA ATATA ATATA ATATA TTATATT ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA --ATATA ATATA
45617315 ATA-A A-ATA ATAT- ATATA A
1 ATATA ATATA ATATA ATATA A
45617333 AACATAAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
3 1 0.02
4 8 0.14
5 43 0.77
7 4 0.07
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:45623427 original size:2 final size:2
Alignment explanation
Indices: 45623420--45623458 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
45623410 AAATTTATTA
45623420 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45623459 AATGAAACTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:45625204 original size:28 final size:28
Alignment explanation
Indices: 45625151--45625211 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
45625141 TAGTATGATA
*
45625151 AATAATATAAATGATAATATTGT-AAAT
1 AATAATATAAATGATAATAATGTAAAAT
45625178 AATAATAATAAATGATAATACAT-TAAAAT
1 AATAAT-ATAAATGATAATA-ATGTAAAAT
45625207 AATAA
1 AATAA
45625212 AGAAAACGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 6 0.20
28 14 0.47
29 10 0.33
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (28 bp):
AATAATATAAATGATAATAATGTAAAAT
Found at i:45625972 original size:15 final size:16
Alignment explanation
Indices: 45625952--45625988 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
45625942 TTTCCGTTTG
45625952 TAAAAAA-AATGAAA-A
1 TAAAAAATAAT-AAAGA
45625967 TAAAAAATAATAAAGA
1 TAAAAAATAATAAAGA
45625983 TAAAAA
1 TAAAAA
45625989 CGAAACGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (16 bp):
TAAAAAATAATAAAGA
Found at i:45626836 original size:44 final size:44
Alignment explanation
Indices: 45626780--45626882 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 44
45626770 AGTGGCTTAA
* * *
45626780 ATCTGCTTCACTACTACTTAGGAAGATAAGAT-TCGCCGTCTTCG
1 ATCTGCTCCACTACTACTTAGGAAGATAAGATCT-ACCATCTTCG
* * * *
45626824 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTG
1 ATCTGCTCCACTACTACTTAGGAAGATAAGATCTACCATCTTCG
*
45626868 ACCTGCTCCACTACT
1 ATCTGCTCCACTACT
45626883 TCGACCTGCT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
44 49 0.98
45 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTACTACTTAGGAAGATAAGATCTACCATCTTCG
Found at i:45626993 original size:44 final size:43
Alignment explanation
Indices: 45626881--45627703 Score: 624
Period size: 44 Copynumber: 18.8 Consensus size: 43
45626871 TGCTCCACTA
* **** *
45626881 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGATTGGTGG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCACCGT
** * * * * *
45626924 CTTAAATCTGCTTCATTACTGCTTAGGAAGATAAGATTCGCCGT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA-TCACCGT
* * *
45626968 CTTCGATCTGCTCCACTACTACTTAGGGAGATGGGATCTACCAT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATC-ACCGT
* * *
45627012 CTT-TACCCTGCTCCACTACTGCTTAGGGAGAT-GAGATCTACCAT
1 CTTCGA-TCTGCTCCACTACTGCTTAGGGAGATAG-GATC-ACCGT
* ** *
45627056 CTTTGCCCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATC-ACCGT
* * * **
45627100 CTTCGACCTGCTCCACTACTACTTAGGGATATAGGA-C-TGGT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCACCGT
** * * * **
45627141 GGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGT
1 --CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA-TCACCGT
*
45627187 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATC-ACCGT
* * * * *
45627231 CTTTGACCTGCTCCACTACTGCTTAGGGAGACAGGACCTACCAT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATC-ACCGT
* * * **
45627275 CTTCGACCTACTCCACTATTGCTTAGGGAGATAGGA-C-TGGT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCACCGT
** * * * * * *
45627316 GGCTTAAATCTACTTCACTACTGCTTAGGAAGATACGATTCGCTGT
1 --CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA-TCACCGT
*
45627362 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATC-ACCGT
* * **
45627406 CTTCGACCTGCTCCACTACTGCTTAGAGAGATAGGA-C-TGGT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCACCGT
** ** * *
45627447 GGCTTAAATCTGCTTTACTACTGCTTAGGAAGATAAGATTCACCGT
1 --CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA-TCACCGT
* *
45627493 CTTCGATCTGCTCCACTACTGCTTAGGGAGATCGGATCTACCAT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATC-ACCGT
**
45627537 CTTCGA-CTTGCTCCACTACTGCTTAGGGAGATAGGA-C-TGGT
1 CTTCGATC-TGCTCCACTACTGCTTAGGGAGATAGGATCACCGT
** * * * * * *
45627578 GGCTTAAATATGCTTCACTACTGCTTAGGAATATAAGATTCGCCGT
1 --CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA-TCACCGT
* * *
45627624 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATCAT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATC-ACCGT
*
45627668 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGA
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA
45627704 CTTGATATGA
Statistics
Matches: 622, Mismatches: 126, Indels: 63
0.77 0.16 0.08
Matches are distributed among these distances:
41 4 0.01
43 159 0.26
44 445 0.72
45 5 0.01
46 9 0.01
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (43 bp):
CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCACCGT
Found at i:45627022 original size:149 final size:149
Alignment explanation
Indices: 45626745--45627031 Score: 486
Period size: 149 Copynumber: 1.9 Consensus size: 149
45626735 CAACCTACTT
*
45626745 CACTGCTGCTCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTACTTAGGAAGATAAG
1 CACTACTGCTCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTACTTAGGAAGATAAG
*
45626810 ATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCT
66 ATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAGGATCTACCATCTTTGACCTGCT
45626875 CCACTACTTCGACCTGCTC
131 CCACTACTTCGACCTGCTC
* * * * *
45626894 CACTACTGCTTAGGGAGATAGGATTGGTGGCTTAAATCTGCTTCATTACTGCTTAGGAAGATAAG
1 CACTACTGCTCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTACTTAGGAAGATAAG
*
45626959 ATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATGGGATCTACCATCTTT-ACCCTGC
66 ATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAGGATCTACCATCTTTGA-CCTGC
45627023 TCCACTACT
130 TCCACTACT
45627032 GCTTAGGGAG
Statistics
Matches: 129, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
148 1 0.01
149 128 0.99
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (149 bp):
CACTACTGCTCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTACTTAGGAAGATAAG
ATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAGGATCTACCATCTTTGACCTGCT
CCACTACTTCGACCTGCTC
Found at i:45627200 original size:175 final size:175
Alignment explanation
Indices: 45627019--45627442 Score: 717
Period size: 175 Copynumber: 2.4 Consensus size: 175
45627009 CATCTTTACC
*
45627019 CTGCTCCACTACTGCTTAGGGAGAT-GAGATCTACCATCTTTGCCCTGCTCCACTACTGCTTAGG
1 CTGCTCCACTACTGCTTAGGGAGATAG-GATCTACCATCTTTGACCTGCTCCACTACTGCTTAGG
* * *
45627083 GAGATAGGATCTACCATCTTCGACCTGCTCCACTACTACTTAGGGATATAGGACTGGTGGCTTAA
65 GAGATAGGACCTACCATCTTCGACCTACTCCACTACTACTTAGGGAGATAGGACTGGTGGCTTAA
*
45627148 ATCTGCTTCACTACTGCTTAGGAAGATAAGATTCG-TCGTCTTCGAT
130 ATCTACTTCACTACTGCTTAGGAAGATAAGATTCGCT-GTCTTCGAT
45627194 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGG
* * *
45627259 AGACAGGACCTACCATCTTCGACCTACTCCACTATTGCTTAGGGAGATAGGACTGGTGGCTTAAA
66 AGATAGGACCTACCATCTTCGACCTACTCCACTACTACTTAGGGAGATAGGACTGGTGGCTTAAA
*
45627324 TCTACTTCACTACTGCTTAGGAAGATACGATTCGCTGTCTTCGAT
131 TCTACTTCACTACTGCTTAGGAAGATAAGATTCGCTGTCTTCGAT
* *
45627369 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGAG
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGG
45627434 AGATAGGAC
66 AGATAGGAC
45627443 TGGTGGCTTA
Statistics
Matches: 235, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
175 233 0.99
176 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.29
Consensus pattern (175 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGG
AGATAGGACCTACCATCTTCGACCTACTCCACTACTACTTAGGGAGATAGGACTGGTGGCTTAAA
TCTACTTCACTACTGCTTAGGAAGATAAGATTCGCTGTCTTCGAT
Found at i:45627335 original size:131 final size:131
Alignment explanation
Indices: 45626881--45627705 Score: 1012
Period size: 131 Copynumber: 6.3 Consensus size: 131
45626871 TGCTCCACTA
* *
45626881 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGATTGGTGGCTTAAATCTGCTTCATTACTGC
1 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGC
* * *
45626946 TTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATGGGATCTACCA
66 TTAGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCA
45627011 T
131 T
* ***** **** *
45627012 CTT-TACCCTGCTCCACTACTGCTTAGGGAGAT-GAGATCTACCATCTTTGCCCTGCTCCACTAC
1 CTTCGA-CCTGCTCCACTACTGCTTAGGGAGATAG-GA-CTGGTGGCTTAAATCTGCTTCACTAC
* * * * * *
45627075 TGCTTAGGGAGATAGGA-TCTACCATCTTCGACCTGCTCCACTACTACTTAGGGATATAGGA-CT
63 TGCTTAGGAAGATAAGATTC-ACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCT
*****
45627138 GGTGG
127 ACCAT
** * * * * * * * ** *
45627143 CTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTG
1 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGT-GGCTTAAATCTGCTTCACTACTG
* * * * * * *
45627208 CTTAGGGAGATAGGA-TCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGACAGGACCTAC
65 CTTAGGAAGATAAGATTC-ACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAC
45627272 CAT
129 CAT
* * *
45627275 CTTCGACCTACTCCACTATTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTACTTCACTACTGC
1 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGC
* * *
45627340 TTAGGAAGATACGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCA
66 TTAGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCA
45627405 T
131 T
* *
45627406 CTTCGACCTGCTCCACTACTGCTTAGAGAGATAGGACTGGTGGCTTAAATCTGCTTTACTACTGC
1 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGC
*
45627471 TTAGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATCGGATCTACCA
66 TTAGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCA
45627536 T
131 T
* *
45627537 CTTCGACTTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATATGCTTCACTACTGC
1 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGC
* * * *
45627602 TTAGGAATATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATCA
66 TTAGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCA
45627667 T
131 T
45627668 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACT
1 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACT
45627706 TGATATGATG
Statistics
Matches: 595, Mismatches: 90, Indels: 18
0.85 0.13 0.03
Matches are distributed among these distances:
130 3 0.01
131 491 0.83
132 101 0.17
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.30
Consensus pattern (131 bp):
CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGC
TTAGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCA
T
Found at i:45627512 original size:175 final size:175
Alignment explanation
Indices: 45626881--45627572 Score: 675
Period size: 175 Copynumber: 4.0 Consensus size: 175
45626871 TGCTCCACTA
* **** * * *
45626881 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGA-TTGGTGGCTTAAATCTGCTTCATTACTG
1 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACCTACCAGCTTAAACCTGCTCCACTACTG
* * ** * * **
45626945 CTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATGGGATCTACC
66 CTTAGGAAGATAAGACT-GCCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGATACGATCTACC
* *
45627010 ATCTT-TACCCTGCTCCACTACTGCTTAGGGAGAT-GAGATCTACCAT
130 ATCTTCGA-TCTGCTCCACTACTGCTTAGGGAGATAG-GATCTACCAT
* * * * ** *
45627056 CTTTGCCCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTA
1 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACCTACCAGCTTAAACCTGCTCCACTACTG
* * * ** * *
45627121 CTTAGGGATATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGAT-T-CGT
66 CTTAGGAAGATAAGACTGCCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGATACGATCTAC--
*
45627184 CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
129 CATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
* * * ** * *
45627231 CTTTGACCTGCTCCACTACTGCTTAGGGAGACAGGACCTACCATCTTCGACCTACTCCACTATTG
1 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACCTACCAGCTTAAACCTGCTCCACTACTG
* * ** * *
45627296 CTTAGGGAGATAGGACTGGTGGCTTAAATCTACTTCACTACTGCTTAGGAAGATACGAT-T-CGC
66 CTTAGGAAGATAAGACTGCCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGATACGATCTAC-C
*
45627359 TGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
130 -ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
* **** * **
45627406 CTTCGACCTGCTCCACTACTGCTTAGAGAGATAGGA-CTGGTGGCTTAAATCTGCTTTACTACTG
1 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACCTACCAGCTTAAACCTGCTCCACTACTG
* * * ** *
45627470 CTTAGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT-CGGATCTAC
66 CTTAGGAAGATAAGACT-GCCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGATAC-GATCTAC
45627534 CATCTTCGA-CTTGCTCCACTACTGCTTAGGGAGATAGGA
129 CATCTTCGATC-TGCTCCACTACTGCTTAGGGAGATAGGA
45627573 CTGGTGGCTT
Statistics
Matches: 437, Mismatches: 69, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
173 1 0.00
174 34 0.08
175 368 0.84
176 33 0.08
177 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.30
Consensus pattern (175 bp):
CTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACCTACCAGCTTAAACCTGCTCCACTACTG
CTTAGGAAGATAAGACTGCCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGATACGATCTACCA
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT
Found at i:45629068 original size:7 final size:7
Alignment explanation
Indices: 45629058--45629093 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
45629048 TCACTTTTAC
45629058 TTTTTCA
1 TTTTTCA
45629065 TTTTTCA
1 TTTTTCA
45629072 TTTTTCA
1 TTTTTCA
45629079 TTTTTCA
1 TTTTTCA
45629086 TTTTTCA
1 TTTTTCA
45629093 T
1 T
45629094 ATATTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTTTCA
Found at i:45629071 original size:21 final size:21
Alignment explanation
Indices: 45629047--45629093 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
45629037 CTTTTGCCTC
45629047 TTCACTTTTAC-TTTTTCATTT
1 TTCA-TTTTACATTTTTCATTT
*
45629068 TTCATTTTTCATTTTTCATTT
1 TTCATTTTACATTTTTCATTT
45629089 TTCAT
1 TTCAT
45629094 ATATTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (21 bp):
TTCATTTTACATTTTTCATTT
Found at i:45629960 original size:14 final size:15
Alignment explanation
Indices: 45629941--45629970 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
45629931 CGCCTTGGCC
45629941 TCTCCTTTTTC-TTT
1 TCTCCTTTTTCATTT
45629955 TCTCCTTTTTCATTT
1 TCTCCTTTTTCATTT
45629970 T
1 T
45629971 TATTATTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.03, C:0.27, G:0.00, T:0.70
Consensus pattern (15 bp):
TCTCCTTTTTCATTT
Found at i:45630803 original size:25 final size:25
Alignment explanation
Indices: 45630752--45630808 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
45630742 AAGAAAATCC
*
45630752 AAAA-AATAAAAGAATAATTATTCA
1 AAAAGAATAAAAGAATAATTATTAA
*
45630776 AAAAGAATAAAAGAAT-ATTGTTAA
1 AAAAGAATAAAAGAATAATTATTAA
45630800 AAAATGAAT
1 AAAA-GAAT
45630809 GCAAAGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 14 0.48
25 15 0.52
ACGTcount: A:0.65, C:0.02, G:0.09, T:0.25
Consensus pattern (25 bp):
AAAAGAATAAAAGAATAATTATTAA
Found at i:45632765 original size:110 final size:112
Alignment explanation
Indices: 45632511--45632823 Score: 497
Period size: 112 Copynumber: 2.8 Consensus size: 112
45632501 GAAATTCAAG
* * * *
45632511 AGGATATTTGGCTATTCGGTTAAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
45632576 GAATTTCCCAAATGCAAAACATTGCCTTATTTCGAAAATTTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTCGAAAATTTTTTAAA
* *
45632623 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCTCTC
1 AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
45632688 GAATTTCCCAAACGCAAAACATTGCCTTATTT-TAAAA-TTTTTGAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTCGAAAATTTTTTAAA
*
45632733 AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACGCCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
45632798 GAATTT-CCAAACGCTAAATATTGCCT
66 GAATTTCCCAAACGCAAAACATTGCCT
45632824 CANNNNNNNN
Statistics
Matches: 187, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
109 18 0.10
110 75 0.40
111 4 0.02
112 90 0.48
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (112 bp):
AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCCAAACGCAAAACATTGCCTTATTTCGAAAATTTTTTAAA
Found at i:45637870 original size:15 final size:16
Alignment explanation
Indices: 45637850--45637886 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
45637840 TTTCCTTTTG
45637850 TAAAAAA-AATGAAA-A
1 TAAAAAATAAT-AAAGA
45637865 TAAAAAATAATAAAGA
1 TAAAAAATAATAAAGA
45637881 TAAAAA
1 TAAAAA
45637887 CGAAATGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (16 bp):
TAAAAAATAATAAAGA
Found at i:45640644 original size:24 final size:24
Alignment explanation
Indices: 45640617--45640668 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
45640607 TTAGTAAGTC
*
45640617 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
45640641 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
45640665 AAAT
1 AAAT
45640669 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:45642481 original size:15 final size:15
Alignment explanation
Indices: 45642451--45642480 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
45642441 AAACTAAACC
45642451 CAAAAACCCGAAAAA
1 CAAAAACCCGAAAAA
45642466 CAAAGAACCCGAAAA
1 CAAA-AACCCGAAAA
45642481 CGTAAACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.63, C:0.27, G:0.10, T:0.00
Consensus pattern (15 bp):
CAAAAACCCGAAAAA
Found at i:45642611 original size:24 final size:24
Alignment explanation
Indices: 45642584--45642635 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
45642574 TTAGTAAGTC
*
45642584 AAATAAACTATACTAATAAATCCT
1 AAATAAACTATACTAATAAATACT
* *
45642608 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
45642632 AAAT
1 AAAT
45642636 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:45647893 original size:11 final size:11
Alignment explanation
Indices: 45647872--45647909 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
45647862 AAAAATTAAA
45647872 AAAAGTATTTTT
1 AAAA-TATTTTT
45647884 AAAATATTTTT
1 AAAATATTTTT
45647895 AAAATA-TTTT
1 AAAATATTTTT
45647905 AAAAT
1 AAAAT
45647910 TAAAAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 9 0.35
11 13 0.50
12 4 0.15
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (11 bp):
AAAATATTTTT
Found at i:45647923 original size:8 final size:9
Alignment explanation
Indices: 45647905--45647965 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
45647895 AAAATATTTT
45647905 AAAATTAAA
1 AAAATTAAA
45647914 AAAATTAAA
1 AAAATTAAA
45647923 AAAGTATTTTAAA
1 AAA--A--TTAAA
* **
45647936 AATATTTTA
1 AAAATTAAA
*
45647945 AAATTTAAA
1 AAAATTAAA
45647954 AAAATTAAA
1 AAAATTAAA
45647963 AAA
1 AAA
45647966 GTATGTAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
9 31 0.77
11 2 0.05
13 7 0.17
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAATTAAA
Found at i:45647953 original size:40 final size:40
Alignment explanation
Indices: 45647884--45647997 Score: 180
Period size: 39 Copynumber: 2.9 Consensus size: 40
45647874 AAGTATTTTT
*
45647884 AAAA-TATTTTTAAAATATTTTAAAA-TTAAAAAAATTAA
1 AAAAGTATTTTAAAAATATTTTAAAATTTAAAAAAATTAA
45647922 AAAAGTATTTTAAAAATATTTTAAAATTTAAAAAAATTAA
1 AAAAGTATTTTAAAAATATTTTAAAATTTAAAAAAATTAA
* *
45647962 AAAAGTA-TGTAAAAATATTTTAAAATTTTAAAAAAT
1 AAAAGTATTTTAAAAATATTTTAAAATTTAAAAAAAT
45647998 AAATATATTT
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
38 4 0.06
39 47 0.66
40 20 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (40 bp):
AAAAGTATTTTAAAAATATTTTAAAATTTAAAAAAATTAA
Found at i:45647981 original size:50 final size:50
Alignment explanation
Indices: 45647862--45647986 Score: 150
Period size: 50 Copynumber: 2.5 Consensus size: 50
45647852 TTTTTATTTT
* **
45647862 AAAAATTAAAAAAAGTATTTTTAAAATATTTTTAAAATATTTTAAAATTAA
1 AAAAATT-AAAAAAGTATTTTAAAAATATTTTTAAAATATTAAAAAATTAA
45647913 AAAAATTAAAAAAGTATTTTAAAAATA-TTTTAAAAT-TTAAAAAAATTAA
1 AAAAATTAAAAAAGTATTTTAAAAATATTTTTAAAATATT-AAAAAATTAA
45647962 AAAAGTATGT-AAAAA-TATTTTAAAA
1 AAAA--AT-TAAAAAAGTATTTTAAAA
45647987 TTTTAAAAAA
Statistics
Matches: 67, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
48 2 0.03
49 21 0.31
50 29 0.43
51 14 0.21
52 1 0.01
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (50 bp):
AAAAATTAAAAAAGTATTTTAAAAATATTTTTAAAATATTAAAAAATTAA
Found at i:45651723 original size:27 final size:27
Alignment explanation
Indices: 45651671--45651723 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
45651661 TAAATCATGA
* * *
45651671 TAAAATATGAAATAATTTAAAGCATAG
1 TAAAATATAAAATAATTAAAAACATAG
45651698 TAAAA-ATAAAATAATTAAAACACATA
1 TAAAATATAAAATAATTAAAA-ACATA
45651724 TGATAAAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (27 bp):
TAAAATATAAAATAATTAAAAACATAG
Found at i:45660444 original size:15 final size:15
Alignment explanation
Indices: 45660421--45660450 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45660411 ATAAGCGCCG
45660421 TAAAAAACGCCGCTA
1 TAAAAAACGCCGCTA
*
45660436 TAAATAACGCCGCTA
1 TAAAAAACGCCGCTA
45660451 AATTTTGCGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.27, G:0.13, T:0.17
Consensus pattern (15 bp):
TAAAAAACGCCGCTA
Found at i:45660642 original size:43 final size:43
Alignment explanation
Indices: 45660531--45660671 Score: 137
Period size: 43 Copynumber: 3.3 Consensus size: 43
45660521 ACTACTATTG
* * * * *
45660531 CCACAAACGCCACTA-AAGAACATGACTTTTAGCAGCGCTTCCC
1 CCACAAACGCCGCTAGAA-AACATGACCTTTAGCGGCACTTTCC
* * * *
45660574 CCACAAA---CGCTATAGAACATGACCTTTAGTGGCGCTTTCC
1 CCACAAACGCCGCTAGAAAACATGACCTTTAGCGGCACTTTCC
* *
45660614 CTATAAACGCCGCTAGAAAACATGACCTTTAGCGGCACTTTCC
1 CCACAAACGCCGCTAGAAAACATGACCTTTAGCGGCACTTTCC
*
45660657 CCACAAATGCCGCTA
1 CCACAAACGCCGCTA
45660672 AAGGTCATTT
Statistics
Matches: 79, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
40 30 0.38
41 1 0.01
43 48 0.61
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (43 bp):
CCACAAACGCCGCTAGAAAACATGACCTTTAGCGGCACTTTCC
Found at i:45666358 original size:25 final size:25
Alignment explanation
Indices: 45666311--45666360 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
45666301 TTCAAGCGAG
*
45666311 CTATATCAGGAAACTCACGAAGAGC
1 CTATATCAGGAAACTCACAAAGAGC
** *
45666336 CTATATCAGGATGCTCATAAAGAGC
1 CTATATCAGGAAACTCACAAAGAGC
45666361 TGTGGTATGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (25 bp):
CTATATCAGGAAACTCACAAAGAGC
Found at i:45676767 original size:41 final size:41
Alignment explanation
Indices: 45676651--45676934 Score: 313
Period size: 41 Copynumber: 7.2 Consensus size: 41
45676641 AAAAAAAATA
* *
45676651 TTTGCGGCGTTTATGGGAAAAATGCCGCTATTGCTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCT
* * *
45676692 TTAGCGCCGTTTATGA-AAAAACGCAGCTATTGCTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCT
*
45676732 TTTGCGGCGTTTATGAGAAAAACGCCGCTACTGCTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCT
* * *
45676773 TTTACGGTGTTTATGAGAAAAAACGCCACTATTGCTTTA---
1 TTTGCGGCGTTTATGAG-AAAAACGCCGCTATTGCTTTACCT
*
45676812 ----C--C-TTTATGAGAAAAACGCCACTATTGCTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCT
* * * *
45676846 TTTGCAGCATTTATGAGAAAAACGCCACTATTACTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCT
* * *
45676887 TTTGCGGCGTTTATG-CAAAAACGGCGCTAATGCTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCT
*
45676927 ATTGCGGC
1 TTTGCGGC
45676935 ATTTTCGATC
Statistics
Matches: 208, Mismatches: 23, Indels: 25
0.81 0.09 0.10
Matches are distributed among these distances:
31 21 0.10
32 8 0.04
35 1 0.00
38 1 0.00
40 64 0.31
41 94 0.45
42 19 0.09
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (41 bp):
TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCT
Found at i:45676786 original size:81 final size:81
Alignment explanation
Indices: 45676651--45676926 Score: 299
Period size: 81 Copynumber: 3.5 Consensus size: 81
45676641 AAAAAAAATA
* * *
45676651 TTTGCGGCGTTTATGGGAAAAATGCCGCTATTGCTTTACC-TTTAGCGCCGTTTATGAAAAAACG
1 TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCTTTTA-CGGCGTTTATGAAAAAACG
45676715 -CAGCTATTGCTTTACCT
65 CCA-CTATTGCTTTACCT
* *
45676732 TTTGCGGCGTTTATGAGAAAAACGCCGCTACTGCTTTACCTTTTACGGTGTTTATGAGAAAAAAC
1 TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCTTTTACGGCGTTTAT--GAAAAAAC
45676797 GCCACTATTGCTTTA---
64 GCCACTATTGCTTTACCT
* * * *
45676812 ----C--C-TTTATGAGAAAAACGCCACTATTGCTTTACCTTTTGCAGCATTTATGAGAAAAACG
1 TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCTTTTACGGCGTTTATGA-AAAAACG
*
45676870 CCACTATTACTTTACCT
65 CCACTATTGCTTTACCT
* * *
45676887 TTTGCGGCGTTTATG-CAAAAACGGCGCTAATGCTTTACCT
1 TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCT
45676927 ATTGCGGCAT
Statistics
Matches: 164, Mismatches: 16, Indels: 30
0.78 0.08 0.14
Matches are distributed among these distances:
71 2 0.01
72 20 0.12
73 40 0.24
74 1 0.01
76 1 0.01
79 1 0.01
81 67 0.41
82 10 0.06
83 20 0.12
84 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (81 bp):
TTTGCGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCTTTTACGGCGTTTATGAAAAAACGC
CACTATTGCTTTACCT
Found at i:45676829 original size:31 final size:32
Alignment explanation
Indices: 45676782--45676847 Score: 125
Period size: 31 Copynumber: 2.1 Consensus size: 32
45676772 TTTTACGGTG
45676782 TTTATGAGAAAAAACGCCACTATTGCTTTACC
1 TTTATGAGAAAAAACGCCACTATTGCTTTACC
45676814 TTTATGAG-AAAAACGCCACTATTGCTTTACC
1 TTTATGAGAAAAAACGCCACTATTGCTTTACC
45676845 TTT
1 TTT
45676848 TGCAGCATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 26 0.76
32 8 0.24
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (32 bp):
TTTATGAGAAAAAACGCCACTATTGCTTTACC
Found at i:45676860 original size:73 final size:72
Alignment explanation
Indices: 45676741--45676888 Score: 224
Period size: 73 Copynumber: 2.0 Consensus size: 72
45676731 TTTTGCGGCG
* * **
45676741 TTTATGAGAAAAACGCCGCTACTGCTTTACCTTTTACGGTGTTTATGAGAAAAAACGCCACTATT
1 TTTATGAGAAAAACGCCACTACTGCTTTACCTTTTACAGCATTTATGAG-AAAAACGCCACTATT
*
45676806 GCTTTACC
65 ACTTTACC
* *
45676814 TTTATGAGAAAAACGCCACTATTGCTTTACCTTTTGCAGCATTTATGAGAAAAACGCCACTATTA
1 TTTATGAGAAAAACGCCACTACTGCTTTACCTTTTACAGCATTTATGAGAAAAACGCCACTATTA
45676879 CTTTACC
66 CTTTACC
45676886 TTT
1 TTT
45676889 TGCGGCGTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
72 25 0.37
73 43 0.63
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (72 bp):
TTTATGAGAAAAACGCCACTACTGCTTTACCTTTTACAGCATTTATGAGAAAAACGCCACTATTA
CTTTACC
Found at i:45677437 original size:16 final size:15
Alignment explanation
Indices: 45677387--45677438 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
45677377 AACATAACGT
*
45677387 AAATTATATCATAAGAA
1 AAATTAAAT-ATAA-AA
**
45677404 AAATTAAATATACTA
1 AAATTAAATATAAAA
45677419 AAATGTAAATATAAAA
1 AAAT-TAAATATAAAA
45677435 AAAT
1 AAAT
45677439 ATAGTAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 5 0.17
16 16 0.55
17 8 0.28
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (15 bp):
AAATTAAATATAAAA
Found at i:45677490 original size:19 final size:20
Alignment explanation
Indices: 45677466--45677508 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
45677456 TTTAAAAATT
45677466 TAATGAAAG-AAAAAATATA
1 TAATGAAAGTAAAAAATATA
*
45677485 TAATGATAGTAAAAAATATA
1 TAATGAAAGTAAAAAATATA
45677505 TAAT
1 TAAT
45677509 TTTAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (20 bp):
TAATGAAAGTAAAAAATATA
Found at i:45677590 original size:18 final size:18
Alignment explanation
Indices: 45677559--45677597 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
45677549 TAAGTTAACC
* *
45677559 ATTTACAAATATAAGTAA
1 ATTTACAAAAATAAATAA
*
45677577 ATTTAGAAAAATAAATAA
1 ATTTACAAAAATAAATAA
45677595 ATT
1 ATT
45677598 CATATAATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (18 bp):
ATTTACAAAAATAAATAA
Found at i:45681889 original size:17 final size:17
Alignment explanation
Indices: 45681859--45681903 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
45681849 CCGATATAAT
* *
45681859 AAATATATTTATTTTTA
1 AAATATTTTTAATTTTA
45681876 AAAT-TTTTTAATTTTA
1 AAATATTTTTAATTTTA
45681892 AAATATTTTTAA
1 AAATATTTTTAA
45681904 AATACTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
AAATATTTTTAATTTTA
Found at i:45681901 original size:11 final size:11
Alignment explanation
Indices: 45681887--45681985 Score: 64
Period size: 11 Copynumber: 8.9 Consensus size: 11
45681877 AATTTTTTAA
45681887 TTTTAAAATAT
1 TTTTAAAATAT
45681898 TTTTAAAATACT
1 TTTTAAAATA-T
* *
45681910 TTTT-TATTAT
1 TTTTAAAATAT
*
45681920 TTTT----TAA
1 TTTTAAAATAT
45681927 TTTTAAAATACT
1 TTTTAAAATA-T
45681939 TTTTAAAATACT
1 TTTTAAAATA-T
* *
45681951 TTTAAAAAAATTAA
1 TTT--TAAAA-TAT
45681965 TTTTAAAATAT
1 TTTTAAAATAT
45681976 TTTTAAAATA
1 TTTTAAAATA
45681986 AATTTTTGGT
Statistics
Matches: 71, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
7 6 0.08
10 5 0.07
11 27 0.38
12 24 0.34
14 7 0.10
15 2 0.03
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:45681913 original size:29 final size:29
Alignment explanation
Indices: 45681868--45681944 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
45681858 TAAATATATT
45681868 TATTTTTAAAAT--TTTTTAATT-TTAAAA
1 TATTTTTAAAATACTTTTTAATTATT-AAA
* ***
45681895 TATTTTTAAAATACTTTTTTATTATTTTT
1 TATTTTTAAAATACTTTTTAATTATTAAA
*
45681924 TAATTTTAAAATACTTTTTAA
1 TATTTTTAAAATACTTTTTAA
45681945 AATACTTTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 12 0.29
29 27 0.66
30 2 0.05
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (29 bp):
TATTTTTAAAATACTTTTTAATTATTAAA
Found at i:45681942 original size:12 final size:12
Alignment explanation
Indices: 45681927--45681985 Score: 66
Period size: 12 Copynumber: 4.8 Consensus size: 12
45681917 TATTTTTTAA
45681927 TTTTAAAATACT
1 TTTTAAAATACT
45681939 TTTTAAAATACT
1 TTTTAAAATACT
* * *
45681951 TTTAAAAAAATT
1 TTTTAAAATACT
45681963 AATTTTAAAATA-T
1 --TTTTAAAATACT
45681976 TTTTAAAATA
1 TTTTAAAATA
45681986 AATTTTTGGT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
11 10 0.25
12 21 0.52
13 1 0.03
14 8 0.20
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (12 bp):
TTTTAAAATACT
Found at i:45681953 original size:29 final size:29
Alignment explanation
Indices: 45681898--45681955 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
45681888 TTTAAAATAT
* * *
45681898 TTTTAAAATACTTTTTTATTATTTTTTAA
1 TTTTAAAATACTTTTTAAATATCTTTTAA
45681927 TTTTAAAATACTTTTTAAA-ATACTTTTAA
1 TTTTAAAATACTTTTTAAATAT-CTTTTAA
45681956 AAAAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTTAAAATACTTTTTAAATATCTTTTAA
Found at i:45681968 original size:26 final size:27
Alignment explanation
Indices: 45681939--45681989 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
45681929 TTAAAATACT
45681939 TTTTAAAATACTTTTAAAA-AAATTAA
1 TTTTAAAATACTTTTAAAATAAATTAA
*
45681965 TTTTAAAATATTTTTAAAATAAATT
1 TTTTAAAATACTTTTAAAATAAATT
45681990 TTTGGTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (27 bp):
TTTTAAAATACTTTTAAAATAAATTAA
Found at i:45681991 original size:12 final size:11
Alignment explanation
Indices: 45681924--45681991 Score: 55
Period size: 12 Copynumber: 5.6 Consensus size: 11
45681914 TATTATTTTT
45681924 TAATTTTAAAA
1 TAATTTTAAAA
*
45681935 TACTTTTTAAAA
1 TA-ATTTTAAAA
*
45681947 TACTTTTAAAAAAA
1 TAATTTT---AAAA
45681961 TTAATTTTAAAA
1 -TAATTTTAAAA
*
45681973 TATTTTTAAAA
1 TAATTTTAAAA
45681984 TAAATTTT
1 T-AATTTT
45681992 TGGTATTTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
11 17 0.37
12 19 0.41
14 4 0.09
15 6 0.13
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (11 bp):
TAATTTTAAAA
Found at i:45687652 original size:26 final size:28
Alignment explanation
Indices: 45687616--45687667 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
45687606 TAAATAGAGG
45687616 GTTTGCAAAA-TTACTGAAATACCCTCA
1 GTTTGCAAAATTTACTGAAATACCCTCA
45687643 GTTTG-AAAATTTACTGAAATACCCT
1 GTTTGCAAAATTTACTGAAATACCCT
45687668 TATAGGGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (28 bp):
GTTTGCAAAATTTACTGAAATACCCTCA
Found at i:45688023 original size:22 final size:23
Alignment explanation
Indices: 45687998--45688045 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
45687988 TGTCCCCACA
*
45687998 TGGTGTGTAGGGTTGG-TTCGGG
1 TGGTGTGTAGGGCTGGATTCGGG
* *
45688020 TGGTGTGTTGGGCTGGATTGGGG
1 TGGTGTGTAGGGCTGGATTCGGG
45688043 TGG
1 TGG
45688046 GTTGCATACT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.04, C:0.04, G:0.56, T:0.35
Consensus pattern (23 bp):
TGGTGTGTAGGGCTGGATTCGGG
Found at i:45688171 original size:27 final size:27
Alignment explanation
Indices: 45688133--45688188 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
45688123 TACCAATATG
* *
45688133 GTATTGGGCTAAGGCCCACCTTGTTCT
1 GTATTGGGCTAAAGCCCACATTGTTCT
*
45688160 GTATTGGGCTAAAGCCTACATTGTTCT
1 GTATTGGGCTAAAGCCCACATTGTTCT
45688187 GT
1 GT
45688189 TCTGTTACTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (27 bp):
GTATTGGGCTAAAGCCCACATTGTTCT
Found at i:45691690 original size:42 final size:42
Alignment explanation
Indices: 45691642--45691723 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
45691632 AAAAAAGAGA
45691642 AGAACAGTTCTATTTATGATTTTCGAAAAGATTTGATTTCCT
1 AGAACAGTTCTATTTATGATTTTCGAAAAGATTTGATTTCCT
45691684 AGAACAGTTCTATTTATGATTTTCGAAAAGATTTGATTTC
1 AGAACAGTTCTATTTATGATTTTCGAAAAGATTTGATTTC
45691724 ATTGTCATCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.43
Consensus pattern (42 bp):
AGAACAGTTCTATTTATGATTTTCGAAAAGATTTGATTTCCT
Found at i:45692222 original size:20 final size:20
Alignment explanation
Indices: 45692197--45692243 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
45692187 GTTCTTAGCT
45692197 CACACGGCGTGTGTTTTGGA
1 CACACGGCGTGTGTTTTGGA
45692217 CACACGGCGTGTGTTTTGGA
1 CACACGGCGTGTGTTTTGGA
45692237 CACACGG
1 CACACGG
45692244 TCATGTCTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.17, C:0.23, G:0.34, T:0.26
Consensus pattern (20 bp):
CACACGGCGTGTGTTTTGGA
Found at i:45697755 original size:28 final size:29
Alignment explanation
Indices: 45697718--45697788 Score: 126
Period size: 29 Copynumber: 2.5 Consensus size: 29
45697708 AAAAATAAAA
45697718 ATTTATCAAAATATTACAAC-TTTTTTTT
1 ATTTATCAAAATATTACAACTTTTTTTTT
*
45697746 ATTTACCAAAATATTACAACTTTTTTTTT
1 ATTTATCAAAATATTACAACTTTTTTTTT
45697775 ATTTATCAAAATAT
1 ATTTATCAAAATAT
45697789 ATCAAAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 19 0.47
29 21 0.52
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (29 bp):
ATTTATCAAAATATTACAACTTTTTTTTT
Found at i:45697769 original size:24 final size:25
Alignment explanation
Indices: 45697718--45697775 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 25
45697708 AAAAATAAAA
*
45697718 ATTTATCAAAATATTACAACTTTTTTTT
1 ATTTACCAAAATATTACAAC---TTTTT
45697746 ATTTACCAAAATATTACAACTTTTT
1 ATTTACCAAAATATTACAACTTTTT
*
45697771 TTTTA
1 ATTTA
45697776 TTTATCAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 9 0.32
28 19 0.68
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTTACCAAAATATTACAACTTTTT
Found at i:45697867 original size:27 final size:27
Alignment explanation
Indices: 45697829--45697914 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
45697819 ACTGACACCA
* *
45697829 GCCAATTAAATTGGCGGCACCAAAGGT
1 GCCAAATAAATTGGCGGCACCAATGGT
* *
45697856 GCCAAATAAATTGGTGGCACCATTGGT
1 GCCAAATAAATTGGCGGCACCAATGGT
*
45697883 GCCAAAGT-CATTGGCGGCACC-ATGGT
1 GCCAAA-TAAATTGGCGGCACCAATGGT
45697909 GCCAAA
1 GCCAAA
45697915 GGAAAAAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.78
28 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (27 bp):
GCCAAATAAATTGGCGGCACCAATGGT
Found at i:45698015 original size:19 final size:19
Alignment explanation
Indices: 45697988--45698057 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
45697978 TCAACTCATT
*
45697988 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
*
45698007 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
45698025 TTCTCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
45698044 TTTTAATTTAATAA
1 TTTTAATTTAATAA
45698058 ACTATTAAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 15 0.35
19 28 0.65
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:45698038 original size:37 final size:37
Alignment explanation
Indices: 45697993--45698063 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
45697983 TCATTTTTTT
45697993 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
45698030 ATTTAATAACTCTATTTTAATTTAATAAACTATT
1 ATTTAATAACTCTATTTTAATTTAATAAACTATT
45698064 AAGTAATACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
Found at i:45698318 original size:18 final size:19
Alignment explanation
Indices: 45698281--45698319 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
45698271 TCAACTCAAT
* *
45698281 TTTTTATTTAATAATTCTA
1 TTTTAATTTAATAATACTA
45698300 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAATACTA
45698318 TT
1 TT
45698320 AAGTAATTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTAATTTAATAATACTA
Found at i:45698453 original size:26 final size:27
Alignment explanation
Indices: 45698417--45698493 Score: 88
Period size: 26 Copynumber: 2.9 Consensus size: 27
45698407 CATTTTTTTT
45698417 CTTTGGCACC-ATGGTGCCGCCAATGA
1 CTTTGGCACCAATGGTGCCGCCAATGA
* *
45698443 CTTTGGCACCAATGG-GCCACCAATTTA
1 CTTTGGCACCAATGGTGCCGCCAA-TGA
**
45698470 -TTTGGCACCTTTGGTGCCGCCAAT
1 CTTTGGCACCAATGGTGCCGCCAAT
45698494 TTAATTAGCT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 30 0.70
27 13 0.30
ACGTcount: A:0.19, C:0.30, G:0.23, T:0.27
Consensus pattern (27 bp):
CTTTGGCACCAATGGTGCCGCCAATGA
Found at i:45698593 original size:28 final size:27
Alignment explanation
Indices: 45698535--45698630 Score: 167
Period size: 27 Copynumber: 3.5 Consensus size: 27
45698525 TTTTTTTTAT
45698535 ATATTTTGGTAAATAAAAAAAGTT-TA
1 ATATTTTGGTAAATAAAAAAAGTTGTA
45698561 TATATTTTGGTAAATAAAAAAAAGTTGTA
1 -ATATTTTGGTAAAT-AAAAAAAGTTGTA
45698590 ATATTTTGGTAAATAAAAAAAGTTGTA
1 ATATTTTGGTAAATAAAAAAAGTTGTA
45698617 ATATTTTGGTAAAT
1 ATATTTTGGTAAAT
45698631 TTTTATTTTT
Statistics
Matches: 67, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
27 41 0.61
28 24 0.36
29 2 0.03
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.40
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTGTA
Found at i:45700691 original size:5 final size:5
Alignment explanation
Indices: 45700681--45700751 Score: 62
Period size: 5 Copynumber: 14.6 Consensus size: 5
45700671 AAAAAAATAT
* *
45700681 TATTA TATTA TAGTAA TGATTA TGTT- T-TTA TATTA TATTA TTATTA
1 TATTA TATTA TA-TTA T-ATTA TATTA TATTA TATTA TATTA -TATTA
45700727 -A-TA TATTA TATTA TATTA TA-TA TAT
1 TATTA TATTA TATTA TATTA TATTA TAT
45700752 ACATAAAACA
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
3 4 0.07
4 8 0.15
5 31 0.56
6 11 0.20
7 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (5 bp):
TATTA
Found at i:45700733 original size:19 final size:19
Alignment explanation
Indices: 45700709--45700751 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
45700699 ATTATGTTTT
45700709 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
45700728 TATATTATATTATATTATA
1 TATATTATATTATATTATA
45700747 TATAT
1 TATAT
45700752 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:45700781 original size:15 final size:15
Alignment explanation
Indices: 45700761--45700802 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
45700751 TACATAAAAC
*
45700761 AAAAGAAAGAATAGA
1 AAAAGAAAGAAAAGA
45700776 AAAAGAAAGAAAAGA
1 AAAAGAAAGAAAAGA
*
45700791 AACAGAATAGAA
1 AAAAGAA-AGAA
45700803 GAGACGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.05
Consensus pattern (15 bp):
AAAAGAAAGAAAAGA
Found at i:45706258 original size:23 final size:23
Alignment explanation
Indices: 45706231--45706327 Score: 92
Period size: 23 Copynumber: 4.3 Consensus size: 23
45706221 TAATTATTTC
*
45706231 AAATATCATTATGTTTATATGTG
1 AAATATCATAATGTTTATATGTG
** *
45706254 AAATATTTCA-AATAATTAT-T-TC
1 AAATA--TCATAATGTTTATATGTG
45706276 AAATATCATAATGTTTATATGTG
1 AAATATCATAATGTTTATATGTG
* **
45706299 AAATATAATTTTGTTTATATGTG
1 AAATATCATAATGTTTATATGTG
45706322 AAATAT
1 AAATAT
45706328 TTCAAATACA
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
20 3 0.05
21 7 0.12
22 7 0.12
23 33 0.56
24 6 0.10
25 3 0.05
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.46
Consensus pattern (23 bp):
AAATATCATAATGTTTATATGTG
Found at i:45706263 original size:45 final size:45
Alignment explanation
Indices: 45706199--45706304 Score: 194
Period size: 45 Copynumber: 2.4 Consensus size: 45
45706189 TTTCAAATAT
* *
45706199 TTTATATGTGAAATATTTCAATTAATTATTTCAAATATCATTATG
1 TTTATATGTGAAATATTTCAAATAATTATTTCAAATATCATAATG
45706244 TTTATATGTGAAATATTTCAAATAATTATTTCAAATATCATAATG
1 TTTATATGTGAAATATTTCAAATAATTATTTCAAATATCATAATG
45706289 TTTATATGTGAAATAT
1 TTTATATGTGAAATAT
45706305 AATTTTGTTT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.47
Consensus pattern (45 bp):
TTTATATGTGAAATATTTCAAATAATTATTTCAAATATCATAATG
Found at i:45707050 original size:29 final size:27
Alignment explanation
Indices: 45707018--45707087 Score: 81
Period size: 29 Copynumber: 2.6 Consensus size: 27
45707008 GAAAATTATT
45707018 TTAAAAATACA-AAAAATTATTTTAAAAAA
1 TTAAAAAT-CATAAAAATTA-TTT-AAAAA
*
45707047 TTAAAAATCATTAAAATTATTTAAAAA
1 TTAAAAATCATAAAAATTATTTAAAAA
*
45707074 -TAAAAATTATAAAA
1 TTAAAAATCATAAAA
45707088 TTAAATAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
26 12 0.32
27 5 0.14
28 5 0.14
29 15 0.41
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (27 bp):
TTAAAAATCATAAAAATTATTTAAAAA
Found at i:45707086 original size:25 final size:25
Alignment explanation
Indices: 45707030--45707114 Score: 80
Period size: 25 Copynumber: 3.2 Consensus size: 25
45707020 AAAAATACAA
*
45707030 AAAATTATTTTAAAAAATTAAAAATCATT
1 AAAATTA-TTT-AAAAA-TAAAAATTA-T
45707059 AAAATTATTTAAAAATAAAAATTAT
1 AAAATTATTTAAAAATAAAAATTAT
** * *
45707084 AAAATTAAATAATAATAAAAAATAT
1 AAAATTATTTAAAAATAAAAATTAT
45707109 ATAAAT
1 A-AAAT
45707115 ATATAAATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
25 23 0.46
26 12 0.24
27 5 0.10
28 3 0.06
29 7 0.14
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.34
Consensus pattern (25 bp):
AAAATTATTTAAAAATAAAAATTAT
Found at i:45707939 original size:26 final size:27
Alignment explanation
Indices: 45707886--45707948 Score: 101
Period size: 26 Copynumber: 2.3 Consensus size: 27
45707876 ATAAAAAATA
*
45707886 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATAATATAAC-TTTTTTTATTT
45707914 ACCAAAATAATATAA-TTTTTTTATTT
1 ACCAAAATAATATAACTTTTTTTATTT
45707940 ACCAAAATA
1 ACCAAAATA
45707949 TACCAAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 20 0.59
28 14 0.41
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (27 bp):
ACCAAAATAATATAACTTTTTTTATTT
Found at i:45708071 original size:27 final size:27
Alignment explanation
Indices: 45708002--45708059 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
45707992 CCTTGGTTAG
*
45708002 GCCAAAGCCATTGGCGGCACCAATGGT
1 GCCAAAGCCATTGGCGACACCAATGGT
45708029 GCCAAAGCCATTGGCGACACCAATGGT
1 GCCAAAGCCATTGGCGACACCAATGGT
45708056 GCCA
1 GCCA
45708060 TATTGATTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.31, G:0.28, T:0.14
Consensus pattern (27 bp):
GCCAAAGCCATTGGCGACACCAATGGT
Found at i:45708181 original size:21 final size:20
Alignment explanation
Indices: 45708151--45708189 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
45708141 AGGTGCTGCG
45708151 GAAAAGAAGAGAAAAAGAGA
1 GAAAAGAAGAGAAAAAGAGA
45708171 GAAAGAGAAGAGAAAAAGA
1 GAAA-AGAAGAGAAAAAGA
45708190 AGATATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (20 bp):
GAAAAGAAGAGAAAAAGAGA
Found at i:45708183 original size:13 final size:11
Alignment explanation
Indices: 45708152--45708192 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
45708142 GGTGCTGCGG
45708152 AAAAGAAGAGA
1 AAAAGAAGAGA
45708163 AAAAG-AGAGA
1 AAAAGAAGAGA
*
45708173 AAGAGAAGAGA
1 AAAAGAAGAGA
45708184 AAAAGAAGA
1 AAAAGAAGA
45708193 TATTTTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAGA
Found at i:45708323 original size:3 final size:3
Alignment explanation
Indices: 45708317--45708348 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
45708307 AGTATTATTA
45708317 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
45708349 AGTATTAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:45709232 original size:18 final size:18
Alignment explanation
Indices: 45709209--45709246 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
45709199 GGTTGGTGGT
45709209 GAAGAAGAAGGTGCTGGC
1 GAAGAAGAAGGTGCTGGC
*
45709227 GAAGAAGAAGGTGGTGGC
1 GAAGAAGAAGGTGCTGGC
45709245 GA
1 GA
45709247 TCATTAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.08, G:0.47, T:0.11
Consensus pattern (18 bp):
GAAGAAGAAGGTGCTGGC
Found at i:45711522 original size:11 final size:11
Alignment explanation
Indices: 45711506--45711532 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
45711496 GCTTACGCTT
45711506 AAATTGTATCC
1 AAATTGTATCC
45711517 AAATTGTATCC
1 AAATTGTATCC
45711528 AAATT
1 AAATT
45711533 AAGTTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (11 bp):
AAATTGTATCC
Found at i:45714307 original size:27 final size:27
Alignment explanation
Indices: 45714269--45714323 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
45714259 TTAGCCACAT
*
45714269 ATTGGTGCCGCCTTTTTATTCCTCTCC
1 ATTGGTGCCGCCTTTTTATTCCCCTCC
45714296 ATTGGTGCCGCCTTTTTATTCCCCTCC
1 ATTGGTGCCGCCTTTTTATTCCCCTCC
45714323 A
1 A
45714324 CCACCTTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.09, C:0.35, G:0.15, T:0.42
Consensus pattern (27 bp):
ATTGGTGCCGCCTTTTTATTCCCCTCC
Found at i:45715097 original size:36 final size:36
Alignment explanation
Indices: 45715056--45715217 Score: 156
Period size: 38 Copynumber: 4.5 Consensus size: 36
45715046 ACCTTTTTTC
*
45715056 TCTTTTTTTC-CCTCTTCTCCTTTCCTTTTCTTTCCT
1 TCTTTTTTTCTTCTCTTCTCCTTT-CTTTTCTTTCCT
* *
45715092 TC-TTTTTTCTTCTCCTT-TCCTCTTCTTCTCCTTTCTT
1 TCTTTTTTTCTTCT-CTTCTCCT-TTCTT-TTCTTTCCT
*
45715129 TTTTTTTTTCTTCTCTTCTCCTTTCCTTTTCTTTCCT
1 TCTTTTTTTCTTCTCTTCTCCTTT-CTTTTCTTTCCT
* *
45715166 TCTTTTTCTTTCTT-TCCTCTCCTTTC-TTTCTTTCTT
1 TC-TTTT-TTTCTTCTCTTCTCCTTTCTTTTCTTTCCT
*
45715202 TCTTTCTTTCTT-TCTT
1 TCTTTTTTTCTTCTCTT
45715218 TCCCTCTCCT
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
34 9 0.08
35 10 0.09
36 22 0.21
37 27 0.25
38 32 0.30
39 6 0.06
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (36 bp):
TCTTTTTTTCTTCTCTTCTCCTTTCTTTTCTTTCCT
Found at i:45715142 original size:38 final size:34
Alignment explanation
Indices: 45715056--45715220 Score: 133
Period size: 34 Copynumber: 4.7 Consensus size: 34
45715046 ACCTTTTTTC
**
45715056 TCTTTTTTTCCCTCTTCTCCTTTCCTTTTCTTTCC-T
1 TCTTTTTTTCTTTCTT-T-CTTTCC-TTTCTTTCCTT
*
45715092 TC-TTTTTTC-TTC-TCCTTTCCTCTTCTTCTCCTT
1 TCTTTTTTTCTTTCTTTCTTTCCT-TTCTT-TCCTT
* *
45715125 TCTTTTTTTTTTTCTTCTCTTCTCCTTTCCTTTTCTT
1 TCTTTTTTTCTTTCTT-TCTT-TCCTTT-CTTTCCTT
*
45715162 TCCTTCTTTTTCTTTCTTTCCTCTCCTTTCTTT-CTT
1 T-CTT-TTTTTCTTTCTTT-CTTTCCTTTCTTTCCTT
*
45715198 TCTTTCTTTCTTTCTTTCTTTCC
1 TCTTTTTTTCTTTCTTTCTTTCC
45715221 CTCTCCTTCT
Statistics
Matches: 108, Mismatches: 9, Indels: 27
0.75 0.06 0.19
Matches are distributed among these distances:
30 1 0.01
31 11 0.10
32 3 0.03
33 9 0.08
34 20 0.19
35 13 0.12
36 7 0.06
37 14 0.13
38 17 0.16
39 13 0.12
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (34 bp):
TCTTTTTTTCTTTCTTTCTTTCCTTTCTTTCCTT
Found at i:45715168 original size:74 final size:69
Alignment explanation
Indices: 45715056--45715220 Score: 221
Period size: 74 Copynumber: 2.4 Consensus size: 69
45715046 ACCTTTTTTC
* *
45715056 TCTTTTTTTC-CCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTTCTTCTCCTTTCCTCTTCTTC
1 TCTTTTTTTCTTCTCTTCTCCTTTCCTTTTCTTTCCTTC-TTTTTCTT-T-CTTTCCTCTCCTT-
45715120 TCCTTTCTT
62 T-CTTTCTT
*
45715129 TTTTTTTTTCTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCTT
1 TCTTTTTTTCTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCTT
45715194 TCTT
66 TCTT
*
45715198 TCTTTCTTTCTT-TCTT-T-CTTTCC
1 TCTTTTTTTCTTCTCTTCTCCTTTCC
45715221 CTCTCCTTCT
Statistics
Matches: 86, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
66 6 0.07
67 1 0.01
68 4 0.05
69 17 0.20
70 1 0.01
71 12 0.14
72 1 0.01
73 17 0.20
74 27 0.31
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (69 bp):
TCTTTTTTTCTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCTT
TCTT
Found at i:45715177 original size:4 final size:4
Alignment explanation
Indices: 45715082--45715219 Score: 93
Period size: 4 Copynumber: 32.0 Consensus size: 4
45715072 CTCCTTTCCT
* *
45715082 TTTC TTTC CTTC TTT- TTTC TTCTCC TTTCC TCTTC TTCTCC TTTC TTTT
1 TTTC TTTC TTTC TTTC TTTC TT-T-C TTT-C T-TTC TT-T-C TTTC TTTC
* *
45715131 TTTT TTTC TTCTC TTCTCC TTTCC TTTTC TTTC CTTC -TT- TTTC TTTC
1 TTTC TTTC TT-TC TT-T-C TTT-C -TTTC TTTC TTTC TTTC TTTC TTTC
*
45715178 TTTCC TCTCC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTT-C T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
45715220 CCTCTCCTTC
Statistics
Matches: 114, Mismatches: 7, Indels: 26
0.78 0.05 0.18
Matches are distributed among these distances:
3 7 0.06
4 69 0.61
5 23 0.20
6 15 0.13
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (4 bp):
TTTC
Found at i:45715381 original size:21 final size:20
Alignment explanation
Indices: 45715341--45715381 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
45715331 GTTTTTTTGT
45715341 ATATTTTGATAAATAAAAAA
1 ATATTTTGATAAATAAAAAA
*
45715361 ATATTTTGGTAAATAAAAAA
1 ATATTTTGATAAATAAAAAA
45715381 A
1 A
45715382 GTTATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (20 bp):
ATATTTTGATAAATAAAAAA
Found at i:45715706 original size:23 final size:24
Alignment explanation
Indices: 45715658--45715704 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
45715648 TTTAAAATAT
45715658 ATATTCTATTTAAATTATTATAAA
1 ATATTCTATTTAAATTATTATAAA
*
45715682 ATATT-TATTTATA-TATTATAAA
1 ATATTCTATTTAAATTATTATAAA
45715704 A
1 A
45715705 ATTAAACTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.45
23 7 0.32
24 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
ATATTCTATTTAAATTATTATAAA
Found at i:45716128 original size:22 final size:22
Alignment explanation
Indices: 45716103--45716171 Score: 102
Period size: 22 Copynumber: 3.1 Consensus size: 22
45716093 ACAAATCCCA
*
45716103 TCTCAATTTCATTCAAAAATTC
1 TCTCAATTTCCTTCAAAAATTC
*
45716125 TCTCAAATTCCTTCAAAAATTC
1 TCTCAATTTCCTTCAAAAATTC
* *
45716147 TCTTAATTTCCTTCCAAAATTC
1 TCTCAATTTCCTTCAAAAATTC
45716169 TCT
1 TCT
45716172 TAAACTCTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.42
Consensus pattern (22 bp):
TCTCAATTTCCTTCAAAAATTC
Found at i:45716206 original size:21 final size:20
Alignment explanation
Indices: 45716178--45716216 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
45716168 CTCTTAAACT
45716178 CTCAAA-TTCCTTTCAAAATC
1 CTCAAATTTCC-TTCAAAATC
45716198 CTCACAATTTCCTTCAAAA
1 CTCA-AATTTCCTTCAAAA
45716217 AATCTCTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.36, C:0.31, G:0.00, T:0.33
Consensus pattern (20 bp):
CTCAAATTTCCTTCAAAATC
Found at i:45716207 original size:52 final size:51
Alignment explanation
Indices: 45716124--45716235 Score: 138
Period size: 52 Copynumber: 2.2 Consensus size: 51
45716114 TTCAAAAATT
* ** * *
45716124 CTCTCAAATTCCTTCAAAAATTCTCTTAATTTCCTTCCAAAATTCTCTTAAA
1 CTCTCAAATTCCTTCAAAAATCCTCACAATTTCCTTCAAAAAATCTC-TAAA
*
45716176 CTCTCAAATTCCTTTC-AAAATCCTCACAATTTCCTTCAAAAAATCTCTCAA
1 CTCTCAAATTCC-TTCAAAAATCCTCACAATTTCCTTCAAAAAATCTCTAAA
45716227 CTC-CAAATT
1 CTCTCAAATT
45716236 AAATTTCTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
50 6 0.11
51 6 0.11
52 38 0.72
53 3 0.06
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.37
Consensus pattern (51 bp):
CTCTCAAATTCCTTCAAAAATCCTCACAATTTCCTTCAAAAAATCTCTAAA
Found at i:45716443 original size:13 final size:14
Alignment explanation
Indices: 45716412--45716444 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
45716402 TAAATTTTAA
45716412 ATTTTATTTAAGAT
1 ATTTTATTTAAGAT
*
45716426 ATTTTATTTATG-T
1 ATTTTATTTAAGAT
45716439 ATTTTA
1 ATTTTA
45716445 GATAAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (14 bp):
ATTTTATTTAAGAT
Found at i:45720975 original size:125 final size:126
Alignment explanation
Indices: 45720819--45721090 Score: 405
Period size: 125 Copynumber: 2.2 Consensus size: 126
45720809 ACGATTTGAC
*
45720819 ACTATTTGCTCA-AAAACGTCAAAAAATAATTATTTCCT-ACATGACCAACTGTAG-CGAAATCG
1 ACTATTTGCTCAGAAAACGTCAAAAAATAATTATTT-CTGACATGACAAACTGT-GCCGAAATCG
* **
45720881 CGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAT-ATAGCATCCTGGTATCAGCAATTTTAT
64 CGTCCACGAGGGCACGATTTCACAATTTCTTCTC-TGATAGCATCCTGGTAGAAGCAATTTTAT
*
45720944 ACTATTTGCTCAGAAAACGTCAAAAAA-AATTATTTCTGACATGACAAACTGTGCCGAAATGGCG
1 ACTATTTGCTCAGAAAACGTCAAAAAATAATTATTTCTGACATGACAAACTGTGCCGAAATCGCG
*
45721008 TCCACGAGGGCACGATTTCACAATTTCTTCTCTGATAGCATCCTGGTAGAAGCGATTTTAT
66 TCCACGAGGGCACGATTTCACAATTTCTTCTCTGATAGCATCCTGGTAGAAGCAATTTTAT
45721069 ACTATTTGAC-CAG-AAACGTCAA
1 ACTATTTG-CTCAGAAAACGTCAA
45721091 CTCGAAATAA
Statistics
Matches: 136, Mismatches: 6, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
124 13 0.10
125 108 0.79
126 15 0.11
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (126 bp):
ACTATTTGCTCAGAAAACGTCAAAAAATAATTATTTCTGACATGACAAACTGTGCCGAAATCGCG
TCCACGAGGGCACGATTTCACAATTTCTTCTCTGATAGCATCCTGGTAGAAGCAATTTTAT
Done.