Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 158 of 190
Found at i:46070555 original size:19 final size:19
Alignment explanation
Indices: 46070503--46070577 Score: 96
Period size: 19 Copynumber: 3.8 Consensus size: 19
46070493 ATTTTTTTAC
*
46070503 ATTATTATTATATTTTTATT
1 ATTATTATT-TATTATTATT
* *
46070523 ATTACTTGTTTATTATTCTT
1 ATTA-TTATTTATTATTATT
46070543 ATTATTATTTATTATTATT
1 ATTATTATTTATTATTATT
*
46070562 AATATTATTTATTATT
1 ATTATTATTTATTATT
46070578 TTCATGTACT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
19 28 0.58
20 16 0.33
21 4 0.08
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (19 bp):
ATTATTATTTATTATTATT
Found at i:46072365 original size:19 final size:20
Alignment explanation
Indices: 46072328--46072367 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
46072318 TCTTTTCGCA
* *
46072328 TTCATTTCATGCATTTGCAT
1 TTCATTACATGCATATGCAT
46072348 TTCATTACAT-CATATGCAT
1 TTCATTACATGCATATGCAT
46072367 T
1 T
46072368 AAACACAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.47
Consensus pattern (20 bp):
TTCATTACATGCATATGCAT
Found at i:46074265 original size:20 final size:20
Alignment explanation
Indices: 46074240--46074280 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
46074230 GCAAATGTTC
46074240 TTTCATTCTTT-ACGATTTTT
1 TTTCATTCTTTCA-GATTTTT
46074260 TTTCATTCTTTCAGATTTTT
1 TTTCATTCTTTCAGATTTTT
46074280 T
1 T
46074281 CTGCCAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.15, C:0.15, G:0.05, T:0.66
Consensus pattern (20 bp):
TTTCATTCTTTCAGATTTTT
Found at i:46075215 original size:7 final size:7
Alignment explanation
Indices: 46075203--46075255 Score: 56
Period size: 7 Copynumber: 7.7 Consensus size: 7
46075193 AAATGACGAG
46075203 ATGAAAA
1 ATGAAAA
46075210 ATGAAAA
1 ATGAAAA
46075217 AGTG-AAA
1 A-TGAAAA
46075224 ATGAAAA
1 ATGAAAA
*
46075231 CTGAAAA
1 ATGAAAA
*
46075238 ATGGAAA
1 ATGAAAA
*
46075245 A-GTAAA
1 ATGAAAA
46075251 ATGAA
1 ATGAA
46075256 GAGGCTAAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
6 7 0.18
7 29 0.76
8 2 0.05
ACGTcount: A:0.64, C:0.02, G:0.19, T:0.15
Consensus pattern (7 bp):
ATGAAAA
Found at i:46075224 original size:14 final size:14
Alignment explanation
Indices: 46075207--46075255 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
46075197 GACGAGATGA
46075207 AAAATGAAAAAGTG
1 AAAATGAAAAAGTG
*
46075221 AAAATG-AAAACTG
1 AAAATGAAAAAGTG
*
46075234 AAAAATGGAAAAGT-
1 -AAAATGAAAAAGTG
46075248 AAAATGAA
1 AAAATGAA
46075256 GAGGCTAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 13 0.43
14 12 0.40
15 5 0.17
ACGTcount: A:0.65, C:0.02, G:0.18, T:0.14
Consensus pattern (14 bp):
AAAATGAAAAAGTG
Found at i:46075227 original size:21 final size:21
Alignment explanation
Indices: 46075203--46075255 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
46075193 AAATGACGAG
46075203 ATGAAAAATGAAAAA-GTGAAA
1 ATGAAAAATGAAAAATG-GAAA
*
46075224 ATGAAAACTGAAAAATGGAAA
1 ATGAAAAATGAAAAATGGAAA
*
46075245 A-GTAAAATGAA
1 ATGAAAAATGAA
46075256 GAGGCTAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 8 0.29
21 19 0.68
22 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.19, T:0.15
Consensus pattern (21 bp):
ATGAAAAATGAAAAATGGAAA
Found at i:46076695 original size:89 final size:89
Alignment explanation
Indices: 46076544--46077495 Score: 1516
Period size: 89 Copynumber: 10.7 Consensus size: 89
46076534 AAAAAAGAAG
* * *
46076544 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGAAAGTAGATTTTGTCTTCATGTAC
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
*
46076609 TGGCATGAAGTAGATCAAAGATAA
66 TGGCGTGAAGTAGATCAAAGATAA
* *
46076633 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGGAGAAAGTAGATCTTGTCTTCATGTAC
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
*
46076698 TGGCGTGAAGTAGATCAAAGGTAA
66 TGGCGTGAAGTAGATCAAAGATAA
* *
46076722 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAATCAGATATTGTCTTCATGTAC
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
46076787 TGGCGTGAAGTAGATCAAAGATAA
66 TGGCGTGAAGTAGATCAAAGATAA
* * *
46076811 CAGATCTTGTCTTCCAATACTGGTGGCGAAACAGATCGAGGAAAGCAGATCTTGTCTTCATGTGC
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
*
46076876 TGGCGTGAAGTAGATCAAAGGTAA
66 TGGCGTGAAGTAGATCAAAGATAA
46076900 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
46076965 TGGCGTGAAGTAGATCAAAGATAA
66 TGGCGTGAAGTAGATCAAAGATAA
* * *
46076989 CATATCTTGTCTTCCCATACTGGTGGCAAAACAGATCGAAGAAAGCGGATCTTGTCTTCATGTAC
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
46077054 TGGCGTGAAGTAGATCAAAGATAA
66 TGGCGTGAAGTAGATCAAAGATAA
* *
46077078 CATATCTTGTCGTCCCATACTGGTGGCG-AA-AGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
* *
46077141 TGGCATGAAGTAGATCAAAGGTAA
66 TGGCGTGAAGTAGATCAAAGATAA
*
46077165 CAGATCTTGTCTTCTCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
46077230 TGGCGTGAAGTAGATCAAAGATAA
66 TGGCGTGAAGTAGATCAAAGATAA
*
46077254 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
46077319 TGGCGTGAAGTAGATCAAAGATAA
66 TGGCGTGAAGTAGATCAAAGATAA
* ** *
46077343 TAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGGAAAAAGCAGATCTTGTCCTCATG
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAA-G--AAAGCAGATCTTGTCTTCATG
* * * *
46077408 TATTTGCGTGAAGTATATCAAAGACAA
63 TACTGGCGTGAAGTAGATCAAAGATAA
* * * **
46077435 CAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAGAA-CAGA-CATTGTCTTCAT
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGA-AAGCAGATC-TTGTCTTCAT
46077496 TGGCGTGAAC
Statistics
Matches: 809, Mismatches: 47, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
87 79 0.10
88 5 0.01
89 642 0.79
90 3 0.00
91 1 0.00
92 79 0.10
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (89 bp):
CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
TGGCGTGAAGTAGATCAAAGATAA
Found at i:46081471 original size:3 final size:3
Alignment explanation
Indices: 46081465--46081544 Score: 63
Period size: 3 Copynumber: 25.7 Consensus size: 3
46081455 ATTTTTTTAC
* * * *
46081465 ATT ATT ATT A-T ATT TTT ATT ATT ACTT GTTT ATT ATT CTT ATT CTT
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT -ATT ATT ATT ATT ATT ATT
* *
46081511 ATTT ATT ATT ATT AAT ATT ATTT ATT ATT TTT AT
1 A-TT ATT ATT ATT ATT ATT A-TT ATT ATT ATT AT
46081545 ATACTTATAT
Statistics
Matches: 60, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
2 2 0.03
3 48 0.80
4 10 0.17
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:46081517 original size:19 final size:19
Alignment explanation
Indices: 46081469--46081544 Score: 80
Period size: 19 Copynumber: 3.9 Consensus size: 19
46081459 TTTTACATTA
*
46081469 TTATTATATTTTTATTATTAC
1 TTATT-TATTATTATTATT-C
* *
46081490 TTGTTTATTATTCTTATTC
1 TTATTTATTATTATTATTC
* *
46081509 TTATTTATTATTATTAATA
1 TTATTTATTATTATTATTC
*
46081528 TTATTTATTATTTTTAT
1 TTATTTATTATTATTAT
46081545 ATACTTATAT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
19 31 0.67
20 11 0.24
21 4 0.09
ACGTcount: A:0.26, C:0.04, G:0.01, T:0.68
Consensus pattern (19 bp):
TTATTTATTATTATTATTC
Found at i:46081522 original size:22 final size:23
Alignment explanation
Indices: 46081469--46081532 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 23
46081459 TTTTACATTA
*
46081469 TTATTA-TATTTTTATTATTACT
1 TTATTATTATTCTTATTATTACT
*
46081491 TGT-TTATTATTCTTATTCTTA-T
1 T-TATTATTATTCTTATTATTACT
**
46081513 TTATTATTATTAATATTATT
1 TTATTATTATTCTTATTATT
46081533 TATTATTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 1 0.03
22 20 0.59
23 13 0.38
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.67
Consensus pattern (23 bp):
TTATTATTATTCTTATTATTACT
Found at i:46085743 original size:2 final size:2
Alignment explanation
Indices: 46085736--46085762 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
46085726 AATAAGCTTT
46085736 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
46085763 TTTTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:46087558 original size:14 final size:15
Alignment explanation
Indices: 46087540--46087582 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
46087530 TATATAATAT
46087540 AATAATAAAATAA-G
1 AATAATAAAATAATG
* *
46087554 TATAATAAAAGAATG
1 AATAATAAAATAATG
46087569 AATGAATAAAATAA
1 AAT-AATAAAATAA
46087583 AAGAGAGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 11 0.48
15 3 0.13
16 9 0.39
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.23
Consensus pattern (15 bp):
AATAATAAAATAATG
Found at i:46088996 original size:23 final size:22
Alignment explanation
Indices: 46088965--46089009 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
46088955 AATAGTTTAG
*
46088965 GTACCAAAATGAGACCAAAAAAA
1 GTACCAAAATGAGA-AAAAAAAA
*
46088988 GTACTAAAATGAGAAAAAAAAA
1 GTACCAAAATGAGAAAAAAAAA
46089010 TTAGTTTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.64, C:0.11, G:0.13, T:0.11
Consensus pattern (22 bp):
GTACCAAAATGAGAAAAAAAAA
Found at i:46093517 original size:3 final size:3
Alignment explanation
Indices: 46093509--46093555 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
46093499 GTAGATCATT
46093509 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
46093556 GCAGATGGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:46100958 original size:28 final size:28
Alignment explanation
Indices: 46100917--46100986 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 28
46100907 AGTATTAATA
* * *
46100917 ATTTTATAT-TTTTTTACACTTTTCTAT
1 ATTTTAAATATTTTTAACAATTTTCTAT
* *
46100944 ATTTTTAAATATTTTTAATAATTTTCTGT
1 A-TTTTAAATATTTTTAACAATTTTCTAT
46100973 ATTTTAAA-ATTTTT
1 ATTTTAAATATTTTT
46100987 GTATATTGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 7 0.19
28 14 0.39
29 15 0.42
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (28 bp):
ATTTTAAATATTTTTAACAATTTTCTAT
Found at i:46100979 original size:18 final size:16
Alignment explanation
Indices: 46100956--46100990 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
46100946 TTTTAAATAT
46100956 TTTTAATAATTTTCTGTA
1 TTTTAA-AATTTT-TGTA
46100974 TTTTAAAATTTTTGTA
1 TTTTAAAATTTTTGTA
46100990 T
1 T
46100991 ATTGAATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 6 0.35
18 6 0.35
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.63
Consensus pattern (16 bp):
TTTTAAAATTTTTGTA
Found at i:46101315 original size:21 final size:21
Alignment explanation
Indices: 46101291--46101330 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
46101281 ATAATATTAT
46101291 TTTATATTTTAGAAAGCTACA
1 TTTATATTTTAGAAAGCTACA
46101312 TTTATATTTTAGAAAGCTA
1 TTTATATTTTAGAAAGCTA
46101331 GAAAATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (21 bp):
TTTATATTTTAGAAAGCTACA
Found at i:46102486 original size:2 final size:2
Alignment explanation
Indices: 46102479--46102547 Score: 129
Period size: 2 Copynumber: 34.5 Consensus size: 2
46102469 GCCCATAAAC
46102479 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
46102521 GA GA GA GA GA GA GA GA GA GA GA TA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
46102548 TAGTAGTAGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.49, C:0.00, G:0.49, T:0.01
Consensus pattern (2 bp):
GA
Found at i:46102554 original size:3 final size:3
Alignment explanation
Indices: 46102546--46102596 Score: 93
Period size: 3 Copynumber: 16.7 Consensus size: 3
46102536 AGAGAGATAG
46102546 AGT AGT AGT AGT AGT ACGT AGT AGT AGT AGT AGT AGT AGT AGT AGT
1 AGT AGT AGT AGT AGT A-GT AGT AGT AGT AGT AGT AGT AGT AGT AGT
46102592 AGT AG
1 AGT AG
46102597 NNNNNNNNNN
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.33, C:0.02, G:0.33, T:0.31
Consensus pattern (3 bp):
AGT
Found at i:46102704 original size:2 final size:2
Alignment explanation
Indices: 46102697--46102762 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
46102687 NNNNNNNNNN
46102697 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
46102739 GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA
46102763 TGGTCTCTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:46117435 original size:25 final size:25
Alignment explanation
Indices: 46117372--46117438 Score: 75
Period size: 25 Copynumber: 2.6 Consensus size: 25
46117362 ACACACCACA
46117372 GCTCTTACGAGCGTTCCTGATATATG
1 GCTCTTACGAGC-TTCCTGATATATG
*
46117398 GCTC-TCCGAAGCTTCCTGATA-ACTG
1 GCTCTTACG-AGCTTCCTGATATA-TG
*
46117423 GCTCTTATGAGCTTCC
1 GCTCTTACGAGCTTCC
46117439 CGATTAATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
24 1 0.03
25 25 0.71
26 9 0.26
ACGTcount: A:0.18, C:0.28, G:0.21, T:0.33
Consensus pattern (25 bp):
GCTCTTACGAGCTTCCTGATATATG
Found at i:46121770 original size:2 final size:2
Alignment explanation
Indices: 46121763--46121821 Score: 109
Period size: 2 Copynumber: 29.0 Consensus size: 2
46121753 AGGAGGAGGA
46121763 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46121805 AT AT AT AT AGT AT AT AT
1 AT AT AT AT A-T AT AT AT
46121822 NNNNNNNNNN
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 54 0.96
3 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:46122650 original size:57 final size:56
Alignment explanation
Indices: 46122548--46122661 Score: 149
Period size: 57 Copynumber: 2.0 Consensus size: 56
46122538 GATCCTATCC
* * *
46122548 TGATATAGCCCTCCCGAAGAATATTTGTGAAAAATATCTAGCCTGGATGGGTGATCT
1 TGATATAGCCCTCCCGAAGAATA-TTGTGAAAAATATCTAACCTGGACGGGTAATCT
* *
46122605 TGATATAGCCCTCCCGAAGAATA-TGTGGAAAATGGATTTAACCTGGACGGGTAATCT
1 TGATATAGCCCTCCCGAAGAATATTGTGAAAAAT--ATCTAACCTGGACGGGTAATCT
46122662 AAATTAGGGT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
55 9 0.18
57 41 0.82
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (56 bp):
TGATATAGCCCTCCCGAAGAATATTGTGAAAAATATCTAACCTGGACGGGTAATCT
Found at i:46137186 original size:50 final size:49
Alignment explanation
Indices: 46137091--46137187 Score: 140
Period size: 50 Copynumber: 2.0 Consensus size: 49
46137081 TTAACTATTA
* * *
46137091 TCATTCGATACACGTAGTAGCCTTCACATAGTACTATAAATGTGACCTT
1 TCATTCGATACACGTAGTAGCCTACACATAGTACTACAAACGTGACCTT
* *
46137140 TCATTCCGGTACACGTAGTAGCCTACACATAGTACTACACACGTGACC
1 TCATT-CGATACACGTAGTAGCCTACACATAGTACTACAAACGTGACC
46137188 ATCACTTTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
49 5 0.12
50 37 0.88
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (49 bp):
TCATTCGATACACGTAGTAGCCTACACATAGTACTACAAACGTGACCTT
Found at i:46138637 original size:2 final size:2
Alignment explanation
Indices: 46138630--46138661 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
46138620 CCTTGGGTTC
46138630 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46138662 TAAGTGGGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46144418 original size:27 final size:30
Alignment explanation
Indices: 46144351--46144418 Score: 69
Period size: 28 Copynumber: 2.5 Consensus size: 30
46144341 GAGTAAAATA
*
46144351 TTTAAAAATG--TTAATTTTTTTTATAATT
1 TTTAAAAATGTTTTAATTGTTTTTATAATT
46144379 TTTAAATAA--TTTTAA-TGTTTTT-TAA-T
1 TTTAAA-AATGTTTTAATTGTTTTTATAATT
46144405 TTTAAAAATGTTTT
1 TTTAAAAATGTTTT
46144419 TATATATTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
25 2 0.06
26 7 0.21
27 7 0.21
28 12 0.35
29 6 0.18
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (30 bp):
TTTAAAAATGTTTTAATTGTTTTTATAATT
Found at i:46144432 original size:22 final size:19
Alignment explanation
Indices: 46144392--46144435 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 19
46144382 AAATAATTTT
46144392 AATGTTTTTTAATTTTAAA
1 AATGTTTTTTAATTTTAAA
46144411 AATGTTTTTATATATTTTTAAA
1 AATGTTTTT-TA-A-TTTTAAA
46144433 AAT
1 AAT
46144436 TAATTAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.41
20 2 0.09
21 1 0.05
22 10 0.45
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
AATGTTTTTTAATTTTAAA
Found at i:46155883 original size:41 final size:41
Alignment explanation
Indices: 46155736--46155875 Score: 235
Period size: 41 Copynumber: 3.4 Consensus size: 41
46155726 AAGTTCAGGT
*
46155736 TTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATTGGGC
1 TTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCGGGC
* *
46155777 TTTATGCCTAGCAGGCTCTGTACCGGTGAAATGTATCAGGC
1 TTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCGGGC
46155818 TTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCGGGC
1 TTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCGGGC
* *
46155859 TTTGTGTCTAGCAGGCT
1 TTTATGCCTAGCAGGCT
46155876 TTATGCCGAT
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 92 1.00
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (41 bp):
TTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCGGGC
Found at i:46155900 original size:82 final size:82
Alignment explanation
Indices: 46155736--46155905 Score: 223
Period size: 82 Copynumber: 2.1 Consensus size: 82
46155726 AAGTTCAGGT
* *
46155736 TTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATTGGGCTTTATGCCTAGCAGGCTCTGTACC
1 TTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCGGGCTTTATGCCTAGCAGGCTCTATACC
* * *
46155801 GGTGAAATGTATCAGGC
66 GATGAAATATATAAGGC
* * * *
46155818 TTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCGGGCTTTGTGTCTAGCAGGCTTTATGCC
1 TTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCGGGCTTTATGCCTAGCAGGCTCTATACC
***
46155883 GATGTTTTATATAAGGC
66 GATGAAATATATAAGGC
*
46155900 TCTATG
1 TTTATG
46155906 TTTAACAAGT
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
82 75 1.00
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (82 bp):
TTTATGCCTAGCAGGCTCTGTGCCGGTGAAATGTATCGGGCTTTATGCCTAGCAGGCTCTATACC
GATGAAATATATAAGGC
Found at i:46159636 original size:18 final size:18
Alignment explanation
Indices: 46159613--46159648 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
46159603 ACTATTTTAG
*
46159613 ATCAAGAAAAAGTGAAAA
1 ATCAAGAAAAAGAGAAAA
*
46159631 ATCAAGGAAAAGAGAAAA
1 ATCAAGAAAAAGAGAAAA
46159649 TTACAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.67, C:0.06, G:0.19, T:0.08
Consensus pattern (18 bp):
ATCAAGAAAAAGAGAAAA
Found at i:46162439 original size:25 final size:24
Alignment explanation
Indices: 46162360--46162440 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 24
46162350 TTTGTGAACC
* *
46162360 TCCCATTAAAGGCTTTTTGGAGCT
1 TCCCGTTAAAGGCTCTTTGGAGCT
* *
46162384 TCCCGTT-AAGTTCTCTTCGGAGCT
1 TCCCGTTAAAG-GCTCTTTGGAGCT
*
46162408 ACCCGTTAAAGGCTCTTTGTGAGCT
1 TCCCGTTAAAGGCTCTTTG-GAGCT
*
46162433 TCTCGTTA
1 TCCCGTTA
46162441 CATGCTCATA
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
23 3 0.07
24 28 0.62
25 14 0.31
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (24 bp):
TCCCGTTAAAGGCTCTTTGGAGCT
Found at i:46166868 original size:18 final size:17
Alignment explanation
Indices: 46166832--46166883 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
46166822 TTAACATTAA
**
46166832 TAAATTTATAT-TTATT
1 TAAATTTATATAAAATT
*
46166848 TAATTTTAATATAAAATT
1 TAAATTT-ATATAAAATT
*
46166866 TAAATTTATATAATATT
1 TAAATTTATATAAAATT
46166883 T
1 T
46166884 CTAAATTGAG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 6 0.21
17 14 0.48
18 9 0.31
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TAAATTTATATAAAATT
Found at i:46178232 original size:29 final size:29
Alignment explanation
Indices: 46178194--46178291 Score: 151
Period size: 29 Copynumber: 3.4 Consensus size: 29
46178184 TACATCTTGG
46178194 CCCTAACTTTTTATTATTTACATTTTGAC
1 CCCTAACTTTTTATTATTTACATTTTGAC
46178223 CCCTAACTTTTTATTATTTACATTTTGAC
1 CCCTAACTTTTTATTATTTACATTTTGAC
** * *
46178252 CTTTAACTTTTTACTATTTACATTTTGGC
1 CCCTAACTTTTTATTATTTACATTTTGAC
*
46178281 CTCTAACTTTT
1 CCCTAACTTTT
46178292 CCTAAAATTA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (29 bp):
CCCTAACTTTTTATTATTTACATTTTGAC
Found at i:46178886 original size:12 final size:12
Alignment explanation
Indices: 46178866--46178909 Score: 56
Period size: 13 Copynumber: 3.8 Consensus size: 12
46178856 ACAACAAAAC
46178866 AGAAAAGAAGAA
1 AGAAAAGAAGAA
*
46178878 AGAAGAGAAGAAA
1 AGAAAAGAAG-AA
46178891 AGAAAAGAA-AA
1 AGAAAAGAAGAA
46178902 A-AAAAGAA
1 AGAAAAGAA
46178910 TACGAAAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 7 0.24
11 3 0.10
12 9 0.31
13 10 0.34
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (12 bp):
AGAAAAGAAGAA
Found at i:46179029 original size:13 final size:13
Alignment explanation
Indices: 46179011--46179035 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46179001 TAGAGAGAAA
46179011 AAGAAAGAAAAAG
1 AAGAAAGAAAAAG
46179024 AAGAAAGAAAAA
1 AAGAAAGAAAAA
46179036 AGAAAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAAAAG
Found at i:46182102 original size:41 final size:41
Alignment explanation
Indices: 46182057--46182293 Score: 312
Period size: 41 Copynumber: 5.5 Consensus size: 41
46182047 GGCTCGATGC
* *
46182057 CTAGCAGGTTTAATGCCGGTGAATTATTTCAGATTTTATGT
1 CTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGT
*
46182098 CTAGCAGGTTTAATGCCGGTGAATTATTTCAGACTTTATGT
1 CTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGT
*
46182139 CTAGCAGGTTTAATGCCGGTGAATTATTTCAGACTTTATGT
1 CTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGT
* *
46182180 CTAACAGGCTTATTGCCGGTGAATTATTTCAGACTTATTTCAGACTTTATGT
1 CTAGCAGGCTTAATGCCGGTG---------A-A-TTATTTCAGACTTTATGT
46182232 CTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGT
1 CTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGT
*
46182273 CTAGCAGGCTTCATGCCGGTG
1 CTAGCAGGCTTAATGCCGGTG
46182294 TACTAAAGTA
Statistics
Matches: 178, Mismatches: 7, Indels: 22
0.86 0.03 0.11
Matches are distributed among these distances:
41 137 0.77
42 1 0.01
43 1 0.01
50 1 0.01
51 1 0.01
52 37 0.21
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (41 bp):
CTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGT
Found at i:46182240 original size:52 final size:52
Alignment explanation
Indices: 46182162--46182267 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
46182152 TGCCGGTGAA
*
46182162 TTATTTCAGACTTTATGTCTAACAGGCTTATTGCCGGTGAATTATTTCAGAC
1 TTATTTCAGACTTTATGTCTAACAGGCTTAATGCCGGTGAATTATTTCAGAC
*
46182214 TTATTTCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATTATTTCAGAC
1 TTATTTCAGACTTTATGTCTAACAGGCTTAATGCCGGTGAATTATTTCAGAC
46182266 TT
1 TT
46182268 TATGTCTAGC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.41
Consensus pattern (52 bp):
TTATTTCAGACTTTATGTCTAACAGGCTTAATGCCGGTGAATTATTTCAGAC
Found at i:46182281 original size:93 final size:93
Alignment explanation
Indices: 46182121--46182293 Score: 312
Period size: 93 Copynumber: 1.9 Consensus size: 93
46182111 TGCCGGTGAA
*
46182121 TTATTTCAGACTTTATGTCTAGCAGGTTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAACA
1 TTATTTCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAACA
46182186 GGCTT-ATTGCCGGTGAATTATTTCAGAC
66 GGCTTCA-TGCCGGTGAATTATTTCAGAC
*
46182214 TTATTTCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAGCA
1 TTATTTCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAACA
46182279 GGCTTCATGCCGGTG
66 GGCTTCATGCCGGTG
46182294 TACTAAAGTA
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
93 76 0.99
94 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (93 bp):
TTATTTCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAACA
GGCTTCATGCCGGTGAATTATTTCAGAC
Found at i:46182310 original size:41 final size:41
Alignment explanation
Indices: 46182219--46182310 Score: 114
Period size: 41 Copynumber: 2.2 Consensus size: 41
46182209 CAGACTTATT
* **
46182219 TCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATTATT
1 TCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATAAAG
* *
46182260 TCAGACTTTATGTCTAGCAGGCTTCATGCCGGTGTACTAAAG
1 TCAGACTTTATGTCTAGCAGGCTTAATGCCGGTG-AATAAAG
*
46182302 T-AGGCTTTA
1 TCAGACTTTA
46182311 AACCTAACAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
41 40 0.91
42 4 0.09
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (41 bp):
TCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATAAAG
Found at i:46182320 original size:134 final size:134
Alignment explanation
Indices: 46182080--46182324 Score: 366
Period size: 134 Copynumber: 1.8 Consensus size: 134
46182070 TGCCGGTGAA
* *
46182080 TTATTTCAGATTTTATGTCTAGCAGGTTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAGCA
1 TTATTTCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAGCA
* * ** ***
46182145 GGTTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAACAGGCTTATTGCCGGTGAATTATTTC
66 GGCTTAATGCCGGTGAATAAAGTCAGACTTTAAACCTAACAGGCTTATTGCCGGTGAATTATTTC
46182210 AGAC
131 AGAC
46182214 TTATTTCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAGCA
1 TTATTTCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAGCA
* * *
46182279 GGCTTCATGCCGGTGTACTAAAGT-AGGCTTTAAACCTAACAGGCTT
66 GGCTTAATGCCGGTG-AATAAAGTCAGACTTTAAACCTAACAGGCTT
46182325 CGTGTCGGTG
Statistics
Matches: 98, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
134 94 0.96
135 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (134 bp):
TTATTTCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAGCA
GGCTTAATGCCGGTGAATAAAGTCAGACTTTAAACCTAACAGGCTTATTGCCGGTGAATTATTTC
AGAC
Found at i:46198221 original size:25 final size:24
Alignment explanation
Indices: 46198138--46198272 Score: 118
Period size: 25 Copynumber: 5.6 Consensus size: 24
46198128 TTGATATGCA
* *
46198138 CTAATGAACAGAGAGCACTAAAGTG
1 CTAAT-AACAGAGAGCACCAACGTG
*
46198163 CT-AT-ACAGAGAGCA-CAGATGTG
1 CTAATAACAGAGAGCACCA-ACGTG
**
46198185 CT-A-AACAGAGAGCACTGACGTG
1 CTAATAACAGAGAGCACCAACGTG
46198207 CTAATAATCAGAGAGCACCAACGTG
1 CTAATAA-CAGAGAGCACCAACGTG
* * *
46198232 CTAGTAGTCAGAGAGCACCAATGTG
1 CTAATA-ACAGAGAGCACCAACGTG
46198257 CTAATAATCAGAGAGC
1 CTAATAA-CAGAGAGC
46198273 GCGCTAAAGT
Statistics
Matches: 90, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
21 1 0.01
22 33 0.37
23 1 0.01
24 4 0.04
25 51 0.57
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (24 bp):
CTAATAACAGAGAGCACCAACGTG
Found at i:46199363 original size:19 final size:20
Alignment explanation
Indices: 46199339--46199376 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
46199329 GTTTTATGTA
46199339 TATAATAAT-AATATAATAT
1 TATAATAATAAATATAATAT
46199358 TATAATAATAAATATAATA
1 TATAATAATAAATATAATA
46199377 ACTTACTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TATAATAATAAATATAATAT
Found at i:46200023 original size:76 final size:76
Alignment explanation
Indices: 46199871--46200422 Score: 548
Period size: 76 Copynumber: 7.3 Consensus size: 76
46199861 GGTCATTACA
* * * * *
46199871 CTCGGGTCGCACGTCGAGGTATTTTCCAATTTCTTTCTTTTCAAAAAAATTAACTCATAATTCGA
1 CTCGGGTCGCACGCCGAGGTATTTTCCAATTTCTAT-TTTTC--AAAGATCAACTCATAATCCGA
*
46199936 GAAGTGAGTTGAGC
63 GAGGTGAGTTGAGC
* * * * * * * *
46199950 CTCGGGTTGTACGCCGAGGTATTTTCCAGTTTTTGTTTTTTAAAGATCAACTCATAATCCGATAA
1 CTCGGGTCGCACGCCGAGGTATTTTCCAATTTCTATTTTTCAAAGATCAACTCATAATCCGAGAG
46200015 GTGAGTTGAGC
66 GTGAGTTGAGC
* * * * * **
46200026 CTCAGGTCACACGCCGAGTTA-TTTCTAATTTCTATTTTTCAAAAAAATCAACTCATAATTTGAG
1 CTCGGGTCGCACGCCGAGGTATTTTCCAATTTCTATTTTTC--AAAGATCAACTCATAATCCGAG
46200090 AGGTGAGTTGAGC
64 AGGTGAGTTGAGC
* *
46200103 CTCGGGTCGCACGCCGAGGTATTTTCC-A--T-TA-TTTTCAAAGATCAACTCATAATTCGAGAC
1 CTCGGGTCGCACGCCGAGGTATTTTCCAATTTCTATTTTTCAAAGATCAACTCATAATCCGAGAG
46200163 GTGAGTTGAGC
66 GTGAGTTGAGC
* * * * *
46200174 CTCAGTTCGCACGCCGAGTTATTTT-CAATTTCTATTTTTCAAAGATCAACTCATAATCTGATAG
1 CTCGGGTCGCACGCCGAGGTATTTTCCAATTTCTATTTTTCAAAGATCAACTCATAATCCGAGAG
46200238 GTGAGTTGAGC
66 GTGAGTTGAGC
* * * * *
46200249 CTCGAGTCGCACGGCAAGGTACTTTCCAATTTCTGTTTTTCAAAGATCAACTCATAATCCGAGAG
1 CTCGGGTCGCACGCCGAGGTATTTTCCAATTTCTATTTTTCAAAGATCAACTCATAATCCGAGAG
*
46200314 GTGAGTTAAGC
66 GTGAGTTGAGC
* * * *** * * **
46200325 TTTGGGTTGCACATTGAGCTATTTT-CAATTT-T-TTTTTCAAAGGTCAACTCATAATTTGAGAG
1 CTCGGGTCGCACGCCGAGGTATTTTCCAATTTCTATTTTTCAAAGATCAACTCATAATCCGAGAG
*
46200387 GTGAGTTAAGC
66 GTGAGTTGAGC
* * * *
46200398 CTCAGGTCGCATGCCAAGTTATTTT
1 CTCGGGTCGCACGCCGAGGTATTTT
46200423 TTTTTTAAAT
Statistics
Matches: 390, Mismatches: 74, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
70 1 0.00
71 55 0.14
73 59 0.15
74 5 0.01
75 75 0.19
76 108 0.28
77 49 0.13
78 8 0.02
79 30 0.08
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (76 bp):
CTCGGGTCGCACGCCGAGGTATTTTCCAATTTCTATTTTTCAAAGATCAACTCATAATCCGAGAG
GTGAGTTGAGC
Found at i:46200081 original size:153 final size:152
Alignment explanation
Indices: 46199875--46200422 Score: 573
Period size: 148 Copynumber: 3.6 Consensus size: 152
46199865 ATTACACTCG
* * * * * *
46199875 GGTCGCACGTCGAGGTATTTTCCAATTTCTTTCTTTTCAAAAAAATTAACTCATAATTCGAGAAG
1 GGTCGCACGCCGAGTTA-TTTCTAATTTCTAT-TTTTCAAAAAAATCAACTCATAATTCGAGAGG
* * *
46199940 TGAGTTGAGCCTCGGGTTGTACGCCGAGGTATTTTCCAGTTTTTGTTTTTTAAAGATCAACTCAT
64 TGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCCA-TTTTTGTTTTTCAAAGATCAACTCAT
*
46200005 AATCCGATAAGTGAGTTGAGCCTCA
128 AATCCGAGAAGTGAGTTGAGCCTCA
* *
46200030 GGTCACACGCCGAGTTATTTCTAATTTCTATTTTTCAAAAAAATCAACTCATAATTTGAGAGGTG
1 GGTCGCACGCCGAGTTATTTCTAATTTCTATTTTTCAAAAAAATCAACTCATAATTCGAGAGGTG
*
46200095 AGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCCA---TT-ATTTTCAAAGATCAACTCATAAT
66 AGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCCATTTTTGTTTTTCAAAGATCAACTCATAAT
* *
46200156 TCGAGACGTGAGTTGAGCCTCA
131 CCGAGAAGTGAGTTGAGCCTCA
* * *
46200178 GTTCGCACGCCGAGTTATTT-TCAATTTCTATTTTTC--AAAGATCAACTCATAA-TCTGATAGG
1 GGTCGCACGCCGAGTTATTTCT-AATTTCTATTTTTCAAAAAAATCAACTCATAATTC-GAGAGG
* * * * *
46200239 TGAGTTGAGCCTCGAGTCGCACGGCAAGGTACTTTCCAATTTCTGTTTTTCAAAGATCAACTCAT
64 TGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCC-ATTTTTGTTTTTCAAAGATCAACTCAT
* * * **
46200304 AATCCGAGAGGTGAGTTAAGCTTTG
128 AATCCGAGAAGTGAGTTGAGCCTCA
* *** * ** *
46200329 GGTTGCACATTGAGCTATTT-TCAATTT-T-TTTTTC--AAAGGTCAACTCATAATTTGAGAGGT
1 GGTCGCACGCCGAGTTATTTCT-AATTTCTATTTTTCAAAAAAATCAACTCATAATTCGAGAGGT
* * * * *
46200389 GAGTTAAGCCTCAGGTCGCATGCCAAGTTATTTT
65 GAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTT
46200423 TTTTTTAAAT
Statistics
Matches: 337, Mismatches: 48, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
145 1 0.00
146 53 0.16
147 2 0.01
148 72 0.21
149 56 0.17
150 3 0.01
151 59 0.18
153 65 0.19
154 12 0.04
155 14 0.04
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (152 bp):
GGTCGCACGCCGAGTTATTTCTAATTTCTATTTTTCAAAAAAATCAACTCATAATTCGAGAGGTG
AGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCCATTTTTGTTTTTCAAAGATCAACTCATAAT
CCGAGAAGTGAGTTGAGCCTCA
Found at i:46200282 original size:224 final size:223
Alignment explanation
Indices: 46199922--46200422 Score: 596
Period size: 224 Copynumber: 2.2 Consensus size: 223
46199912 CAAAAAAATT
* * * * * *
46199922 AACTCATAATTCGAGAAGTGAGTTGAGCCTCGGGTT-GTACGCCGAGGTATTTTCCAGTTTTTGT
1 AACTCATAATTCGAGAAGTGAGTTGAGCCTC-AGTTCGCACGCCGAGTTATTTTCCAATTTCTAT
* * *
46199986 TTTTTAAAGATCAACTCATAATCCGATAAGTGAGTTGAGCCTCAGGTCACACGCCGAGTTATTTC
65 TTTTCAAAGATCAACTCATAATCCGATAAGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTC
* ** * *
46200051 TAATTTCTATTTTTCAAAAAAATCAACTCATAATTTGAGAGGTGAGTTGAGCCTCGGGTCGCACG
130 CAATTTCTATTTTTC--AAAAATCAACTCATAATCCGAGAGGTGAGTTAAGCCTCGGGTCGCACA
* *
46200116 CCGAGGTATTTTCCA-TTATTTTCAAAGATC
193 CCGAGCTATTTTCAATTTATTTTCAAAGATC
*
46200146 AACTCATAATTCGAGACGTGAGTTGAGCCTCAGTTCGCACGCCGAGTTATTTT-CAATTTCTATT
1 AACTCATAATTCGAGAAGTGAGTTGAGCCTCAGTTCGCACGCCGAGTTATTTTCCAATTTCTATT
* * * *
46200210 TTTCAAAGATCAACTCATAATCTGATAGGTGAGTTGAGCCTC-GAGTCGCACGGCAAGGTACTTT
66 TTTCAAAGATCAACTCATAATCCGATAAGTGAGTTGAGCCTCAG-GTCACACGCCAAGGTA-TTT
* * * * * *
46200274 CCAATTTCTGTTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTAAGCTTTGGGTTGCACAT
129 CCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTAAGCCTCGGGTCGCACAC
* * *
46200339 TGAGCTATTTTCAATTTTTTTTTCAAAGGTC
194 CGAGCTATTTTCAA-TTTATTTTCAAAGATC
* * * * * *
46200370 AACTCATAATTTGAGAGGTGAGTTAAGCCTCAGGTCGCATGCCAAGTTATTTT
1 AACTCATAATTCGAGAAGTGAGTTGAGCCTCAGTTCGCACGCCGAGTTATTTT
46200423 TTTTTTAAAT
Statistics
Matches: 236, Mismatches: 36, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
222 52 0.22
223 62 0.26
224 122 0.52
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (223 bp):
AACTCATAATTCGAGAAGTGAGTTGAGCCTCAGTTCGCACGCCGAGTTATTTTCCAATTTCTATT
TTTCAAAGATCAACTCATAATCCGATAAGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTCC
AATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTAAGCCTCGGGTCGCACACCG
AGCTATTTTCAATTTATTTTCAAAGATC
Found at i:46201092 original size:29 final size:29
Alignment explanation
Indices: 46201012--46201084 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
46201002 AATTTATTAA
* *
46201012 TTATATTTTTGCCCTTAACTTTTTACTAT
1 TTATATTTTGGCCCTTAACTTTTTACAAT
* * *
46201041 TTAAATTTTGACCCTTAATTTTTTACAAT
1 TTATATTTTGGCCCTTAACTTTTTACAAT
46201070 TTATATTTTGGCCCT
1 TTATATTTTGGCCCT
46201085 CAAGTTTTCC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.55
Consensus pattern (29 bp):
TTATATTTTGGCCCTTAACTTTTTACAAT
Found at i:46201651 original size:7 final size:7
Alignment explanation
Indices: 46201631--46201696 Score: 50
Period size: 7 Copynumber: 9.3 Consensus size: 7
46201621 GAAAAAATAA
46201631 AAGAAA-
1 AAGAAAG
46201637 AAGAAAAG
1 AAG-AAAG
46201645 AAGAAAG
1 AAGAAAG
*
46201652 AAGAGAG
1 AAGAAAG
46201659 AAGAGAAGAG
1 -A-AGAA-AG
46201669 AAGAAA-
1 AAGAAAG
46201675 ATA-AAAG
1 A-AGAAAG
46201682 AAGAAAG
1 AAGAAAG
46201689 AA-AAAG
1 AAGAAAG
46201695 AA
1 AA
46201697 AAGGCAATGG
Statistics
Matches: 50, Mismatches: 2, Indels: 16
0.74 0.03 0.24
Matches are distributed among these distances:
6 14 0.28
7 22 0.44
8 8 0.16
9 4 0.08
10 2 0.04
ACGTcount: A:0.73, C:0.00, G:0.26, T:0.02
Consensus pattern (7 bp):
AAGAAAG
Found at i:46202652 original size:14 final size:14
Alignment explanation
Indices: 46202633--46202662 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
46202623 TAAAGTCAAC
*
46202633 TTTTTTAAAAGAAA
1 TTTTTTAAAAAAAA
46202647 TTTTTTAAAAAAAA
1 TTTTTTAAAAAAAA
46202661 TT
1 TT
46202663 ATTCTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
TTTTTTAAAAAAAA
Found at i:46203182 original size:19 final size:19
Alignment explanation
Indices: 46203151--46203189 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
46203141 TGGCTAGCCG
*
46203151 AAAGAGAGAAAGAATAAGA
1 AAAGAGAGAAAGAAGAAGA
46203170 AAAGA-AGAGAAGAAGAAGA
1 AAAGAGAGA-AAGAAGAAGA
46203189 A
1 A
46203190 TGAGAAGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (19 bp):
AAAGAGAGAAAGAAGAAGA
Found at i:46203215 original size:5 final size:5
Alignment explanation
Indices: 46203205--46203229 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
46203195 AGGAGAGGGC
46203205 GGGAA GGGAA GGGAA GGGAA GGGAA
1 GGGAA GGGAA GGGAA GGGAA GGGAA
46203230 AAAGAAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (5 bp):
GGGAA
Found at i:46203239 original size:4 final size:4
Alignment explanation
Indices: 46203230--46203275 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
46203220 GGGAAGGGAA
46203230 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
46203276 GCAAAATAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:46210086 original size:15 final size:15
Alignment explanation
Indices: 46210066--46210094 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
46210056 TAAAAATACA
46210066 TTTTCTTTCTTTCTC
1 TTTTCTTTCTTTCTC
46210081 TTTTCTTTCTTTCT
1 TTTTCTTTCTTTCT
46210095 TCTCTTCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTCTTTCTTTCTC
Found at i:46210113 original size:23 final size:19
Alignment explanation
Indices: 46210067--46210114 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
46210057 AAAAATACAT
*
46210067 TTTCTTTCTTTCTCTTTTC
1 TTTCTTTCTTTCTCTTCTC
46210086 TTTCTTTC-TTCTCTTCTC
1 TTTCTTTCTTTCTCTTCTC
*
46210104 TCTCTCTTCTT
1 TTTCT-TTCTT
46210115 CTGCTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 13 0.52
19 11 0.44
20 1 0.04
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTCTTTCTTTCTCTTCTC
Found at i:46215121 original size:16 final size:18
Alignment explanation
Indices: 46215096--46215128 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
46215086 CAAAAATTAT
46215096 AAAAATATTATA-AAAAC
1 AAAAATATTATATAAAAC
46215113 AAAAA-ATTATATAAAA
1 AAAAATATTATATAAAA
46215129 AATTATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAAATATTATATAAAAC
Found at i:46215144 original size:28 final size:28
Alignment explanation
Indices: 46215058--46215144 Score: 72
Period size: 28 Copynumber: 3.1 Consensus size: 28
46215048 CAAAACAAAG
* **
46215058 AAAAAA-TATTTAAAAAATTATTTTTTGA
1 AAAAAATTATATAAAAAATTA-TAATTGA
* * **
46215086 CAAAAATTATA-AAAATATTATAA-AAA
1 AAAAAATTATATAAAAAATTATAATTGA
46215112 CAAAAAATTATATAAAAAATTATAATTGA
1 -AAAAAATTATATAAAAAATTATAATTGA
46215141 AAAA
1 AAAA
46215145 TCGAAGCATA
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
26 1 0.02
27 11 0.25
28 28 0.64
29 4 0.09
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (28 bp):
AAAAAATTATATAAAAAATTATAATTGA
Found at i:46217069 original size:23 final size:22
Alignment explanation
Indices: 46217033--46217089 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
46217023 ACTTAAGAGT
46217033 AATTAAAATAATTAAATTCAAAAA
1 AATT-AAATAATTAAATT-AAAAA
* *
46217057 AATTAAATGATTAAATTTAAAA
1 AATTAAATAATTAAATTAAAAA
46217079 AATT-AATAATT
1 AATTAAATAATT
46217090 GAGTGATGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.20
22 8 0.27
23 12 0.40
24 4 0.13
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (22 bp):
AATTAAATAATTAAATTAAAAA
Found at i:46220593 original size:39 final size:40
Alignment explanation
Indices: 46220534--46220623 Score: 110
Period size: 39 Copynumber: 2.2 Consensus size: 40
46220524 AAAAATTATA
* * * * *
46220534 TTTAATACAATAAAGCATTTATTATATTTAT-TTGTGTTT
1 TTTAATATAATAAAACATTTATTATACTTATGTAGTATTT
*
46220573 TTTAATATAATAAAATATTTATTATACTTATGGTAGTATTT
1 TTTAATATAATAAAACATTTATTATACTTAT-GTAGTATTT
46220614 TTTAATATAA
1 TTTAATATAA
46220624 ATATTTTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 27 0.63
41 16 0.37
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.52
Consensus pattern (40 bp):
TTTAATATAATAAAACATTTATTATACTTATGTAGTATTT
Found at i:46232990 original size:21 final size:21
Alignment explanation
Indices: 46232945--46232987 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
46232935 TAAAGTTATA
*
46232945 TAAAAAGAAACTACAAAATGT
1 TAAAAAGAAACTACAAAAAGT
46232966 TAAAAAGAAACTACAAATAAGT
1 TAAAAAGAAACTACAAA-AAGT
46232988 AAACCTCCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.63, C:0.09, G:0.09, T:0.19
Consensus pattern (21 bp):
TAAAAAGAAACTACAAAAAGT
Found at i:46234678 original size:24 final size:24
Alignment explanation
Indices: 46234651--46234699 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
46234641 ACTATATTTA
* * *
46234651 GATTATGTATTTCGGTGTAGTCTT
1 GATTACGTACTTCGATGTAGTCTT
*
46234675 GATTACGTACTTCGATGTTGTCTT
1 GATTACGTACTTCGATGTAGTCTT
46234699 G
1 G
46234700 GCTCCGATGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.16, C:0.12, G:0.24, T:0.47
Consensus pattern (24 bp):
GATTACGTACTTCGATGTAGTCTT
Found at i:46237304 original size:23 final size:22
Alignment explanation
Indices: 46237265--46237310 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
46237255 TGAAAATATA
46237265 TTAAATATATATATTTTTATTT
1 TTAAATATATATATTTTTATTT
*
46237287 TTAAA-ATATACTAGTTTTTGTTT
1 TTAAATATATA-TA-TTTTTATTT
46237310 T
1 T
46237311 ATTTTAAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 5 0.24
22 7 0.33
23 9 0.43
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (22 bp):
TTAAATATATATATTTTTATTT
Found at i:46237489 original size:37 final size:35
Alignment explanation
Indices: 46237365--46237490 Score: 92
Period size: 37 Copynumber: 3.3 Consensus size: 35
46237355 TTAATACAAT
46237365 TAACAATTAATAATTTGATATAATTTCATAATTTTA
1 TAACAATTAATAATTTGATATAATTT-ATAATTTTA
* * * ***
46237401 CTAACAATTAATCATTTTACTAACAAAATATTAGTAACAATA
1 -TAACAATTAATAATTTGA-T---ATAAT-TTA-TAATTTTA
*
46237443 -AATAATTAATAATTTGATATAATTTGATAATTTTA
1 TAACAATTAATAATTTGATATAATTT-ATAATTTTA
46237478 GTAACAATTAATA
1 -TAACAATTAATA
46237491 CAATTAACAA
Statistics
Matches: 66, Mismatches: 14, Indels: 18
0.67 0.14 0.18
Matches are distributed among these distances:
35 7 0.11
36 5 0.08
37 26 0.39
38 1 0.02
39 1 0.02
40 14 0.21
41 5 0.08
42 7 0.11
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (35 bp):
TAACAATTAATAATTTGATATAATTTATAATTTTA
Found at i:46237919 original size:2 final size:2
Alignment explanation
Indices: 46237914--46237968 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
46237904 ATGAAGTGTG
46237914 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
46237956 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
46237969 TATTTAATGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:46241017 original size:19 final size:19
Alignment explanation
Indices: 46240982--46241031 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
46240972 TTTATACATG
* *
46240982 TACATATTTATATTTTATA
1 TACATATCTATAATTTATA
* *
46241001 TATATTTCTATAATTTATA
1 TACATATCTATAATTTATA
46241020 TACATATCTATA
1 TACATATCTATA
46241032 TATATCGATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (19 bp):
TACATATCTATAATTTATA
Found at i:46241226 original size:4 final size:4
Alignment explanation
Indices: 46241217--46241241 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
46241207 ATGTTTTAGT
46241217 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
46241242 ATGCTTGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:46243359 original size:26 final size:25
Alignment explanation
Indices: 46243315--46243366 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
46243305 GGCCAGGCTC
46243315 CAGTCACCAGCCACCGCGCCGGCCAT
1 CAGTCACCAGCCACCGCGCC-GCCAT
* * *
46243341 CAGTCACCGGCGACTGCGCCGCCAT
1 CAGTCACCAGCCACCGCGCCGCCAT
46243366 C
1 C
46243367 CGCGGTGGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.17, C:0.48, G:0.25, T:0.10
Consensus pattern (25 bp):
CAGTCACCAGCCACCGCGCCGCCAT
Found at i:46244843 original size:227 final size:224
Alignment explanation
Indices: 46244331--46244966 Score: 905
Period size: 227 Copynumber: 2.8 Consensus size: 224
46244321 CCGCTATTTA
* * * * *
46244331 CAGTCTGCTCCACTACAACTTTAGAGAGATAAGACTCGTTATGGTAGATTTAATCCAACCTACTG
1 CAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAGATTTAATCCGACCTACTG
* * * * * *
46244396 CAACTTCAGAGGTTAGGATTCATCGTTTTAATCCACTCCATTACAACTTTAAGAAGATAGAATTA
66 CAACTTCAGAGGATAGGATTCATCGTTTTAATCCGCTCCACTACAACTTCAAGGAGATAGGATTA
* *
46244461 ATAGCTTCAATCTGCTCCACTGCAACTTT-AGGGAGATAAGATTAGTATCTTCAACCTACTCCAC
131 ATAGCTTCAATCTGCTCCGCTGCAA-TTTCAGGGAGATAAGATTGGTATCTTCAACCTACTCCAC
46244525 TACAACTATGGAGATAAGGTCGGTTATCTT
195 TACAACTATGGAGATAAGGTCGGTTATCTT
* * * *
46244555 TAGTCTGCTCCACTGCAATTTCAGGGAGGTAAGACTTGTTATGGTAGATTTAATTCGACCTACTG
1 CAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAGATTTAATCCGACCTACTG
* *
46244620 CAACTTCAGAGGCATAGGATTCATCGTTTTAATCTGCTCCACTACAACTTCAGGGAGATAGGATT
66 CAACTTCAGAGG-ATAGGATTCATCGTTTTAATCCGCTCCACTACAACTTCAAGGAGATAGGATT
* * * * *
46244685 GATAACTTCAATCTGTTCCGCTGCAATTTCAGGGAGATAAGATTGGTATCTTCAACCTGCTCCAT
130 AATAGCTTCAATCTGCTCCGCTGCAATTTCAGGGAGATAAGATTGGTATCTTCAACCTACTCCAC
* * **
46244750 TGCAACTTTAGAGAGATAAGGTTTGTTATCTT
195 TACAACTAT-G-GAGATAAGGTCGGTTATCTT
* * *
46244782 CAGTCTACTCTACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAGATTTAATCCGACCTATTG
1 CAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAGATTTAATCCGACCTACTG
* *
46244847 CAACTTCAGAGGTATAGGATTTATCGTTTTAATCCGCTCCACTACAACTTCAAGGAAATAGGATT
66 CAACTTCAGAGG-ATAGGATTCATCGTTTTAATCCGCTCCACTACAACTTCAAGGAGATAGGATT
*
46244912 AATAGCTTCAATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTGGTTATCTTCA
130 AATAGCTTCAATCTGCTCCGCTGCAATTTCAGGGAGATAAGATTGG-TATCTTCA
46244967 GTCTGCTTCA
Statistics
Matches: 363, Mismatches: 44, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
224 71 0.20
225 105 0.29
226 1 0.00
227 178 0.49
228 8 0.02
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (224 bp):
CAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAGATTTAATCCGACCTACTG
CAACTTCAGAGGATAGGATTCATCGTTTTAATCCGCTCCACTACAACTTCAAGGAGATAGGATTA
ATAGCTTCAATCTGCTCCGCTGCAATTTCAGGGAGATAAGATTGGTATCTTCAACCTACTCCACT
ACAACTATGGAGATAAGGTCGGTTATCTT
Found at i:46244853 original size:183 final size:183
Alignment explanation
Indices: 46244712--46245188 Score: 670
Period size: 183 Copynumber: 2.6 Consensus size: 183
46244702 CCGCTGCAAT
* ** * * * * * * *
46244712 TTCAGGGAGATAAGATTGGTATCTTCAACCTGCTCCATTGCAACTTTAGAGAGATAAGGTTTGTT
1 TTCAGGGAGATAGGATTAATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTT
46244777 ATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAGATTTAATCCGACC
66 ATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAGATTTAATCCGACC
* * *
46244842 TATTGCAACTTCAGAGGTATAGGATTTATCGTTTTAATCCGCTCCACTACAAC
131 TATTGCAACTTCAGAGGCATAGGATTCATCATTTTAATCCGCTCCACTACAAC
* * * * *
46244895 TTCAAGGAAATAGGATTAATAGCTTCAATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTGGTT
1 TTCAGGGAGATAGGATTAATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTT
* * **
46244960 ATCTTCAGTCTGCT-TCACTGCAATTTCAATGAGATAAGACTTGTTATGGTAGATTTAATCCGAC
66 ATCTTCAGTCTACTCT-ACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAGATTTAATCCGAC
46245024 CTATTGCAACTTCAGAGGCATAGGATTCATCATTTTAATCCGCTCCACTACAAC
130 CTATTGCAACTTCAGAGGCATAGGATTCATCATTTTAATCCGCTCCACTACAAC
*
46245078 TTCAGGGAGATAGGATTAATAACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAG-T
1 TTCAGGGAGATAGGATTAATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTT
** * * **
46245142 ATCTTCAACCTTCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTAT
66 ATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATAAGACTTGTTAT
46245189 CTTCAGTCTT
Statistics
Matches: 257, Mismatches: 35, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
182 39 0.15
183 218 0.85
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (183 bp):
TTCAGGGAGATAGGATTAATAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTT
ATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAGATTTAATCCGACC
TATTGCAACTTCAGAGGCATAGGATTCATCATTTTAATCCGCTCCACTACAAC
Found at i:46245063 original size:227 final size:226
Alignment explanation
Indices: 46244376--46245197 Score: 724
Period size: 227 Copynumber: 3.6 Consensus size: 226
46244366 TCGTTATGGT
* * * ** *
46244376 AGATTTAATCCAACCTACTGCAACTTCAGAGG-TTAGGATTCATCGTTTTAATCCACTCCATTAC
1 AGATTTAATCCGACCTACTGCAACTTCAGAGGCATAGGATTAATCGTTTTAATCTGCTCCACTAC
* * * * * * * *
46244440 AACTTTAAGAAGATAGAATTAATAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTA
66 AACTTCAGGGAGATAGGATTAATAACTTCAATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTG
** * * * * * * * *
46244505 G-TATCTTCAACCTACTCCACTACAACTAT-G-GAGATAAG-GTCGGTTATCTTTAGTCTGCTCC
131 GTTATCTTCAGTCTGCTCCACTGCAACTTTAGAGAGATAAGACT-TGTTATCGTCAGTCTAC-CC
* ** * *
46244566 -ACTGCAATTTCAGGGAGGTAAGACTTGTTATGGT
194 TACTGCAACTTCAGGGACATAAGAC-TGTCAT-GC
* *
46244600 AGATTTAATTCGACCTACTGCAACTTCAGAGGCATAGGATTCATCGTTTTAATCTGCTCCACTAC
1 AGATTTAATCCGACCTACTGCAACTTCAGAGGCATAGGATTAATCGTTTTAATCTGCTCCACTAC
* * *
46244665 AACTTCAGGGAGATAGGATTGATAACTTCAATCTGTTCCGCTGCAATTTCAGGGAGATAAGATTG
66 AACTTCAGGGAGATAGGATTAATAACTTCAATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTG
** * ** * *
46244730 G-TATCTTCAACCTGCTCCATTGCAACTTTAGAGAGATAAGGTTTGTTATCTTCAGTCTACTCTA
131 GTTATCTTCAGTCTGCTCCACTGCAACTTTAGAGAGATAAGACTTGTTATCGTCAGTCTACCCTA
* * *
46244794 CTGCAACTTCAGGGAGATAAGACTTGTTATGGT
196 CTGCAACTTCAGGGACATAAGAC-TGTCAT-GC
* * * *
46244827 AGATTTAATCCGACCTATTGCAACTTCAGAGGTATAGGATTTATCGTTTTAATCCGCTCCACTAC
1 AGATTTAATCCGACCTACTGCAACTTCAGAGGCATAGGATTAATCGTTTTAATCTGCTCCACTAC
* * *
46244892 AACTTCAAGGAAATAGGATTAATAGCTTCAATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTG
66 AACTTCAGGGAGATAGGATTAATAACTTCAATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTG
* * *
46244957 GTTATCTTCAGTCTGCTTCACTGCAA-TTTCA-ATGAGATAAGACTTGTTATGGT-AGATTTAAT
131 GTTATCTTCAGTCTGCTCCACTGCAACTTT-AGA-GAGATAAGACTTGTTATCGTCAG-TCT-A-
* *
46245019 CCGACCTATTGCAACTTCAGAGG-CATAGGA-T-TCAT-C
191 -C--CCTACTGCAACTTCAG-GGACATAAGACTGTCATGC
* * * * ***
46245055 A-TTTTAATCCG-CTCCACTACAACTTCAG-GGAGATAGGATTAATAACTTTAATCTGCTCCACT
1 AGATTTAATCCGAC-CTACTGCAACTTCAGAGG-CATAGGATTAATCGTTTTAATCTGCTCCACT
* * * * * * * *
46245117 GCAACTTCAGGGAGATAAGATTAGTATCTTCAACCTTCTCCACTGCAACTTCAGGGAGATAAGGT
64 ACAACTTCAGGGAGATAGGATTAATAACTTCAATCTGCTCCGCTGCAACTTCAGGGAGATAAGAT
*
46245182 TTGTTATCTTCAGTCT
129 TGGTTATCTTCAGTCT
46245198 TGGTCTGCTT
Statistics
Matches: 506, Mismatches: 75, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
224 30 0.06
225 107 0.21
226 5 0.01
227 296 0.58
228 41 0.08
229 1 0.00
230 3 0.01
231 2 0.00
233 19 0.04
234 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (226 bp):
AGATTTAATCCGACCTACTGCAACTTCAGAGGCATAGGATTAATCGTTTTAATCTGCTCCACTAC
AACTTCAGGGAGATAGGATTAATAACTTCAATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTG
GTTATCTTCAGTCTGCTCCACTGCAACTTTAGAGAGATAAGACTTGTTATCGTCAGTCTACCCTA
CTGCAACTTCAGGGACATAAGACTGTCATGC
Found at i:46245178 original size:44 final size:44
Alignment explanation
Indices: 46244465--46245193 Score: 322
Period size: 44 Copynumber: 16.1 Consensus size: 44
46244455 GAATTAATAG
*
46244465 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAT
* * * * * **
46244509 CTTCAACCTACTCCACTACAAC-T-ATGGAGATAAGGTCGGTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAG-TAT
* * * * *
46244552 CTTTAGTCTGCTCCACTGCAATTTCAGGGAGGTAAGACTTGTTATGGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA----TTA--GTAT
* * * * *
46244602 ATTTAAT-TCGAC-CTACTGCAACTTCAGAGG-CATAGGATTCATCGT-T
1 CTTCAATCT-G-CTCCACTGCAACTTCAG-GGAGATAAGATT-A--GTAT
* * *
46244648 -TT-AATCTGCTCCACTACAACTTCAGGGAGATAGGATT-GATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAG-TAT
* * * *
46244690 CTTCAATCTGTTCCGCTGCAATTTCAGGGAGATAAGATTGGTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAT
* * * * * *
46244734 CTTCAACCTGCTCCATTGCAACTTTAGAGAGATAAGGTTTGTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAG-TAT
* * * *
46244779 CTTCAGTCTACTCTACTGCAACTTCAGGGAGATAAGACTTGTTATGGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA----TTA--GTAT
* * * * * * *
46244829 ATTTAATCCGAC-CTATTGCAACTTCAGAGG-TATAGGATT--TAT
1 CTTCAATCTG-CTCCACTGCAACTTCAG-GGAGATAAGATTAGTAT
* * * * * * * *
46244871 CGTTTTAATCCGCTCCACTACAACTTCAAGGAAATAGGATTAATAG
1 C--TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAT
* *
46244917 CTTCAATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTGGTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAG-TAT
* * * ** *
46244962 CTTCAGTCTGCTTCACTGCAATTTCAATGAGATAAGACTTGTTATGGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA----TTA--GTAT
* * * * * * *
46245012 ATTTAATCCGAC-CTATTGCAACTTCAGAGG-CATAGGATTCA-TCAT
1 CTTCAATCTG-CTCCACTGCAACTTCAG-GGAGATAAGATT-AGT-AT
* * * * * *
46245057 -TTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAT
*
46245100 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAT
* * * *
46245144 CTTCAACCTTCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAG-TAT
46245189 CTTCA
1 CTTCA
46245194 GTCTTGGTCT
Statistics
Matches: 514, Mismatches: 119, Indels: 103
0.70 0.16 0.14
Matches are distributed among these distances:
40 1 0.00
41 1 0.00
42 14 0.03
43 33 0.06
44 273 0.53
45 87 0.17
46 9 0.02
47 5 0.01
49 6 0.01
50 74 0.14
51 11 0.02
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAT
Found at i:46245397 original size:51 final size:51
Alignment explanation
Indices: 46245311--46245424 Score: 129
Period size: 51 Copynumber: 2.2 Consensus size: 51
46245301 ATCCGCTCCA
* * *
46245311 CTTCAGCTTTAATCTATTCCACTACAATGCCAGGGAAACAAGATTCGCTGC
1 CTTCAGCTTTAATCTATTCAACTACAAAGCCAGGGAAACAAGATTCGATGC
* * * ** * * *
46245362 CTTTAGCTTTAATCTGTTCAACTGCAAAGTTAGGGAAATAAGATTTGATGT
1 CTTCAGCTTTAATCTATTCAACTACAAAGCCAGGGAAACAAGATTCGATGC
46245413 CTTCAGCTTTAA
1 CTTCAGCTTTAA
46245425 CACCAAGGAG
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (51 bp):
CTTCAGCTTTAATCTATTCAACTACAAAGCCAGGGAAACAAGATTCGATGC
Found at i:46245511 original size:87 final size:87
Alignment explanation
Indices: 46245350--46245511 Score: 189
Period size: 87 Copynumber: 1.9 Consensus size: 87
46245340 CCAGGGAAAC
** * * * * * **
46245350 AAGATTCGCTGCCTTTAGCTTTAATCTGTTCAACTGCAAAGTTAGGGAAATAAGATTTGATGTCT
1 AAGATTCGCCACCTTCAGCTTTAATCTGCTCAACTGCAAAGTCAGGGAAACAAGATTCGATACCT
46245415 TCAGCTTTAACACCAAGGAGAT
66 TCAGCTTTAACACCAAGGAGAT
** * *
46245437 AAGATTCGCCACCTTCAGCTTTAATCTGCTCCGCTGCAACGTCAGGGAAACAAGATTCGCTACCT
1 AAGATTCGCCACCTTCAGCTTTAATCTGCTCAACTGCAAAGTCAGGGAAACAAGATTCGATACCT
* *
46245502 TTAGTTTTAA
66 TCAGCTTTAA
46245512 TCTGTTTCAC
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
87 60 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (87 bp):
AAGATTCGCCACCTTCAGCTTTAATCTGCTCAACTGCAAAGTCAGGGAAACAAGATTCGATACCT
TCAGCTTTAACACCAAGGAGAT
Found at i:46245559 original size:138 final size:138
Alignment explanation
Indices: 46245311--46245562 Score: 319
Period size: 138 Copynumber: 1.8 Consensus size: 138
46245301 ATCCGCTCCA
* * *
46245311 CTTCAGCTTTAATCTATTCCACTACAATGCCAGGGAAACAAGATTCGCTGCCTTTAGCTTTAATC
1 CTTCAGCTTTAATCTACTCCACTACAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
** * *
46245376 TGTTCAACTGCAAAGTTAGGGAAATAAGATTTGATGTCTTCAGCTTTAACACCAAGGAGATAAGA
66 TGTTCAACTGCAAAGCCAAGGAAATAAGATTCGATGTCTTCAGCTTTAACACCAAGGAGATAAGA
46245441 TTCGCCAC
131 TTCGCCAC
* * * * *
46245449 CTTCAGCTTTAATCTGCTCCGCTGCAACGTCAGGGAAACAAGATTCGCTACCTTTAGTTTTAATC
1 CTTCAGCTTTAATCTACTCCACTACAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
* * ** *
46245514 TGTTTC-ACTGTAACA-CCAAGGAGATGGGATTCGCTGTCTTCAGCTTTAA
66 TG-TTCAACTGCAA-AGCCAAGGAAATAAGATTCGATGTCTTCAGCTTTAA
46245563 TCTGCCCCAC
Statistics
Matches: 95, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
138 91 0.96
139 4 0.04
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (138 bp):
CTTCAGCTTTAATCTACTCCACTACAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
TGTTCAACTGCAAAGCCAAGGAAATAAGATTCGATGTCTTCAGCTTTAACACCAAGGAGATAAGA
TTCGCCAC
Found at i:46245669 original size:123 final size:123
Alignment explanation
Indices: 46245449--46245671 Score: 288
Period size: 123 Copynumber: 1.8 Consensus size: 123
46245439 GATTCGCCAC
* * * * *
46245449 CTTCAGCTTTAATCTGCTCCGCTGCAACGTCAGGGAAACAAGATTCGCTACCTTTAGTTTTAATC
1 CTTCAGCTTTAATCTACTCCACTGCAACGTCACGGAAACAAGATTCGCTACATTTAGCTTTAATC
* * **
46245514 TGTTTCACTGTAACACCAAGGAGATGGGATTCGCTGTCTTCAGCTTTAATCTGCCCCA
66 TGTTTCACTGCAACACCAAGGAAATAAGATTCGCTGTCTTCAGCTTTAATCTGCCCCA
* *
46245572 CTTCATCTTTAATCTATTCCACTGCAACG-CTACGGAAACAAGATTCGCTACATTTAGCTTTAAT
1 CTTCAGCTTTAATCTACTCCACTGCAACGTC-ACGGAAACAAGATTCGCTACATTTAGCTTTAAT
* * *
46245636 TTGTTTCACTGCAACGCC-AGAGAAATAATATTCGCT
65 CTGTTTCACTGCAACACCAAG-GAAATAAGATTCGCT
46245672 ATCTGCAATC
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
122 3 0.04
123 81 0.96
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.32
Consensus pattern (123 bp):
CTTCAGCTTTAATCTACTCCACTGCAACGTCACGGAAACAAGATTCGCTACATTTAGCTTTAATC
TGTTTCACTGCAACACCAAGGAAATAAGATTCGCTGTCTTCAGCTTTAATCTGCCCCA
Found at i:46246057 original size:24 final size:24
Alignment explanation
Indices: 46246024--46246084 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
46246014 CGGATTTTCC
* *
46246024 CCACTGTAATTTTCTAGGTTCAAT
1 CCACTGTAATTTTCAAGGTTAAAT
* * *
46246048 CCACTATAATCTTCAAGTTTAAAT
1 CCACTGTAATTTTCAAGGTTAAAT
46246072 CCACTGTAATTTT
1 CCACTGTAATTTT
46246085 GGGACATAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (24 bp):
CCACTGTAATTTTCAAGGTTAAAT
Found at i:46249137 original size:29 final size:28
Alignment explanation
Indices: 46249104--46249164 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
46249094 AAAGCCCATT
46249104 TTTTTTAAAAAATTACCGAAATGGGCCA
1 TTTTTTAAAAAATTACCGAAATGGGCCA
** * *
46249132 GTTTTTTAATTATTTACCGGAATGGGCCA
1 -TTTTTTAAAAAATTACCGAAATGGGCCA
46249161 TTTT
1 TTTT
46249165 CCGCGAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 4 0.14
29 24 0.86
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (28 bp):
TTTTTTAAAAAATTACCGAAATGGGCCA
Found at i:46249463 original size:22 final size:22
Alignment explanation
Indices: 46249438--46249486 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
46249428 AAATTCAATA
*
46249438 TCAATTTCC-TTCAAAAATTCTC
1 TCAAATTCCTTTC-AAAATTCTC
46249460 TCAAATTCCTTTCAAAATTCTC
1 TCAAATTCCTTTCAAAATTCTC
46249482 TCAAA
1 TCAAA
46249487 CTCTCAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.39
Consensus pattern (22 bp):
TCAAATTCCTTTCAAAATTCTC
Found at i:46249491 original size:30 final size:30
Alignment explanation
Indices: 46249457--46249515 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
46249447 TTCAAAAATT
* *
46249457 CTCTCAAATTCCTTTCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
46249487 CTCTCAAATTCCTTCCAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
46249516 TTTCCTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:46249526 original size:21 final size:22
Alignment explanation
Indices: 46249487--46249528 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
46249477 TTCTCTCAAA
46249487 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
46249509 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCCAAAA
46249529 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:46249595 original size:9 final size:9
Alignment explanation
Indices: 46249581--46249634 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
46249571 TTAGTTTAAG
46249581 AAATTTTTA
1 AAATTTTTA
*
46249590 AAATTTTTT
1 AAATTTTTA
**
46249599 ATTTTTTTA
1 AAATTTTTA
46249608 AAATAATTTTA
1 AAAT--TTTTA
46249619 AAATTTTTA
1 AAATTTTTA
*
46249628 ATATTTT
1 AAATTTT
46249635 CAACAATGGC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
9 27 0.75
11 9 0.25
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (9 bp):
AAATTTTTA
Found at i:46249757 original size:14 final size:15
Alignment explanation
Indices: 46249725--46249758 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
46249715 AAATTTTAAA
46249725 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
46249740 TTTTATTTAAG-TAT
1 TTTTATTTAAGATAT
46249754 TTTTA
1 TTTTA
46249759 GATATTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:46252365 original size:124 final size:123
Alignment explanation
Indices: 46252146--46252410 Score: 390
Period size: 124 Copynumber: 2.1 Consensus size: 123
46252136 CCACGAGGGC
*
46252146 GCGATTTGACACTATTTGCTTAGAAACGTCAAAAAAATTATTTTCTACATGACCAACTGTAGCGA
1 GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAATTATTTTCTACATGACCAACTGTAGCGA
* * * * * *
46252211 AATCGCGTCCACGAGGGCGCGATTTTACAATTTCTTCTCATATAGCATCCTGGTATCA
66 AATCGCGTCCACGAGGCCACAATTTCACAATTTCTTCTCAAATAGCATCCTGGTATAA
* *
46252269 GCGATTTTATACTATTTGCTCAGAAAACGTCAAAAAAAATTA-TTTCTTACATGACC-ACTGTAG
1 GCGATTTGACACTATTTGCTCAG-AAACGTC-AAAAAAATTATTTTC-TACATGACCAACTGTAG
46252332 CGAAATCGCGTCCACGAGGCCACAATTTCACAATTTCTTCTCAAATAGCATCCTGGTATAA
63 CGAAATCGCGTCCACGAGGCCACAATTTCACAATTTCTTCTCAAATAGCATCCTGGTATAA
**
46252393 GCGATTTCCCACTATTTG
1 GCGATTTGACACTATTTG
46252411 ACCAGATACA
Statistics
Matches: 127, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
123 20 0.16
124 88 0.69
125 19 0.15
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (123 bp):
GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAATTATTTTCTACATGACCAACTGTAGCGA
AATCGCGTCCACGAGGCCACAATTTCACAATTTCTTCTCAAATAGCATCCTGGTATAA
Found at i:46255916 original size:26 final size:25
Alignment explanation
Indices: 46255887--46255942 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
46255877 AAAATAAATA
*
46255887 AATAAA-TAAAAATGGAATGTATATAT
1 AATAAAGTAAAAAT-GAAAGTAT-TAT
*
46255913 AATAAAGTAAACATGAAAGTATTAT
1 AATAAAGTAAAAATGAAAGTATTAT
46255938 AATAA
1 AATAA
46255943 TAATACTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 8 0.30
26 13 0.48
27 6 0.22
ACGTcount: A:0.59, C:0.02, G:0.11, T:0.29
Consensus pattern (25 bp):
AATAAAGTAAAAATGAAAGTATTAT
Found at i:46257903 original size:10 final size:10
Alignment explanation
Indices: 46257865--46257961 Score: 55
Period size: 10 Copynumber: 10.0 Consensus size: 10
46257855 TTTAAAAAGG
46257865 TATATAAAATT
1 TATA-AAAATT
46257876 TATTAAAAA-T
1 TA-TAAAAATT
*
46257886 TACCAAAAATT
1 TA-TAAAAATT
46257897 TAT-AAAATT
1 TATAAAAATT
*
46257906 T-T--AAATA
1 TATAAAAATT
* *
46257913 TGTAAGAATT
1 TATAAAAATT
*
46257923 TAT-CAAATT
1 TATAAAAATT
46257932 TATTAAAAATT
1 TA-TAAAAATT
*
46257943 TATAAAAATA
1 TATAAAAATT
46257953 T-TAAAAATT
1 TATAAAAATT
46257962 ATTTTATTTA
Statistics
Matches: 67, Mismatches: 12, Indels: 16
0.71 0.13 0.17
Matches are distributed among these distances:
7 5 0.07
8 2 0.03
9 20 0.30
10 22 0.33
11 16 0.24
12 2 0.03
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (10 bp):
TATAAAAATT
Found at i:46258191 original size:16 final size:17
Alignment explanation
Indices: 46258172--46258221 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
46258162 AAATTTGAAT
46258172 TTTTCATAATTTTA-AA
1 TTTTCATAATTTTATAA
46258188 TTTTCATAACATTTTATAA
1 TTTTCAT-A-ATTTTATAA
46258207 TTTT-AGTAATTTTAT
1 TTTTCA-TAATTTTAT
46258222 TAAAATTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 7 0.23
17 8 0.27
18 8 0.27
19 7 0.23
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (17 bp):
TTTTCATAATTTTATAA
Found at i:46278167 original size:37 final size:39
Alignment explanation
Indices: 46278115--46278190 Score: 95
Period size: 37 Copynumber: 2.0 Consensus size: 39
46278105 CAATGTTATT
* **
46278115 TTTATATATTATATATTTTATTATACATA-AAA-ATTAAA
1 TTTATATATAATATATAATATTATA-ATATAAATATTAAA
46278153 TTTATA-ATAATATATAATATTATAATATAAATATTAAA
1 TTTATATATAATATATAATATTATAATATAAATATTAAA
46278191 AAATTCTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 3 0.09
37 18 0.55
38 12 0.36
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (39 bp):
TTTATATATAATATATAATATTATAATATAAATATTAAA
Found at i:46278177 original size:15 final size:14
Alignment explanation
Indices: 46278159--46278188 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
46278149 TAAATTTATA
46278159 ATAATATATAATATT
1 ATAATATA-AATATT
46278174 ATAATATAAATATT
1 ATAATATAAATATT
46278188 A
1 A
46278189 AAAAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
ATAATATAAATATT
Found at i:46278228 original size:7 final size:7
Alignment explanation
Indices: 46278218--46278249 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
46278208 TATTAATTTT
46278218 TAATAAA
1 TAATAAA
46278225 TAATAAA
1 TAATAAA
46278232 TAATAAA
1 TAATAAA
46278239 TAATAAA
1 TAATAAA
46278246 TAAT
1 TAAT
46278250 TATTAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:46281983 original size:17 final size:17
Alignment explanation
Indices: 46281956--46282055 Score: 83
Period size: 17 Copynumber: 5.5 Consensus size: 17
46281946 CCGATATAAT
* * *
46281956 AAATATCTTTATTTTTT
1 AAATATTTTTAATTTTA
*
46281973 AAATTTTTTTAATTTTA
1 AAATATTTTTAATTTTA
*
46281990 AAATATTTTTAAAATACTTTTT
1 AAATATTTTT---A-A-TTTTA
* *
46282012 TATTATTTTTAAATTTTA
1 AAATATTTTT-AATTTTA
46282030 AAATATTTTTAATTTTA
1 AAATATTTTTAATTTTA
46282047 AAATATTTT
1 AAATATTTT
46282056 AAAAATACTT
Statistics
Matches: 67, Mismatches: 11, Indels: 10
0.76 0.12 0.11
Matches are distributed among these distances:
17 38 0.57
18 12 0.18
19 1 0.01
20 3 0.04
21 1 0.01
22 12 0.18
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (17 bp):
AAATATTTTTAATTTTA
Found at i:46281999 original size:11 final size:11
Alignment explanation
Indices: 46281985--46282068 Score: 53
Period size: 11 Copynumber: 8.4 Consensus size: 11
46281975 ATTTTTTTAA
46281985 TTTTAAAATAT
1 TTTTAAAATAT
46281996 TTTTAAAATACT
1 TTTTAAAATA-T
* *
46282008 TTTT-TATTAT
1 TTTTAAAATAT
46282018 TTTT--AA-A-
1 TTTTAAAATAT
46282025 TTTTAAAATAT
1 TTTTAAAATAT
46282036 TTTT---A-A-
1 TTTTAAAATAT
46282042 TTTTAAAATAT
1 TTTTAAAATAT
*
46282053 TTTAAAAATACT
1 TTTTAAAATA-T
46282065 TTTT
1 TTTT
46282069 TAATTTTTAA
Statistics
Matches: 57, Mismatches: 5, Indels: 21
0.69 0.06 0.25
Matches are distributed among these distances:
6 4 0.07
7 5 0.09
8 2 0.04
9 4 0.07
10 7 0.12
11 26 0.46
12 9 0.16
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:46282055 original size:57 final size:55
Alignment explanation
Indices: 46281968--46282079 Score: 179
Period size: 57 Copynumber: 2.0 Consensus size: 55
46281958 ATATCTTTAT
* * *
46281968 TTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTATTATTTTTAAA
1 TTTTAAAATATTTTTAATTTTAAAATATTTTAAAAATACTTTTTTA--ATTTTTAAA
46282025 TTTTAAAATATTTTTAATTTTAAAATATTTTAAAAATACTTTTTTAATTTTTAAA
1 TTTTAAAATATTTTTAATTTTAAAATATTTTAAAAATACTTTTTTAATTTTTAAA
46282080 ATAAATTTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
55 9 0.17
57 43 0.83
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (55 bp):
TTTTAAAATATTTTTAATTTTAAAATATTTTAAAAATACTTTTTTAATTTTTAAA
Found at i:46282088 original size:21 final size:20
Alignment explanation
Indices: 46282051--46282089 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
46282041 ATTTTAAAAT
*
46282051 ATTTTAAAAATACTTTTTTA
1 ATTTTAAAAATAATTTTTTA
*
46282071 ATTTTTAAAATAAATTTTT
1 ATTTTAAAAAT-AATTTTT
46282090 GGTATTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTTTAAAAATAATTTTTTA
Found at i:46284450 original size:17 final size:16
Alignment explanation
Indices: 46284427--46284464 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
46284417 AAGATACAGG
*
46284427 GGACACACGGCCGTGT
1 GGACACACGCCCGTGT
46284443 GTGACACACGCCCGTGT
1 G-GACACACGCCCGTGT
46284460 GGACA
1 GGACA
46284465 AAAATAGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.21, C:0.32, G:0.34, T:0.13
Consensus pattern (16 bp):
GGACACACGCCCGTGT
Found at i:46286424 original size:41 final size:41
Alignment explanation
Indices: 46286408--46286643 Score: 418
Period size: 41 Copynumber: 5.8 Consensus size: 41
46286398 CTTATAGCTT
* * *
46286408 GATTCAGATCATCGGCACGTAGCCTGCTAGGTTTATAACCT
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
46286449 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
46286490 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
* *
46286531 GATTCAAATCACCGGCACATAGCCTGCTAGGTTTATATCCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
*
46286572 GATTCAAATCACCGGCACATAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
46286613 GATTCAAATCACCGGCACGTAGCCTGCTAGG
1 GATTCAAATCACCGGCACGTAGCCTGCTAGG
46286644 CGCTTAGCCT
Statistics
Matches: 188, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 188 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (41 bp):
GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
Found at i:46293873 original size:41 final size:41
Alignment explanation
Indices: 46293857--46294051 Score: 345
Period size: 41 Copynumber: 4.8 Consensus size: 41
46293847 CTTATAGCTT
* *
46293857 GATTCAGATCACCGGCACGTAGCCTGCTAGGTTTATAACCT
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
46293898 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
46293939 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
* *
46293980 GATTCAAATCACTGGCACATAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
*
46294021 GATTCAAATCACCGGCACGTAGCCTACTAGG
1 GATTCAAATCACCGGCACGTAGCCTGCTAGG
46294052 CGCTTAGCCT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 147 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (41 bp):
GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
Found at i:46293965 original size:82 final size:82
Alignment explanation
Indices: 46293828--46294051 Score: 349
Period size: 82 Copynumber: 2.7 Consensus size: 82
46293818 ACAGATTCAA
* ** * ** *
46293828 CGGCACATAGACTGCTAGACTTATAGCTTGATTCAGATCACCGGCACGTAGCCTGCTAGGTTTAT
1 CGGCACATAGCCTGCTAGGTTTATAACCCGATTCAAATCACCGGCACGTAGCCTGCTAGGTTTAT
*
46293893 AACCTGATTCAAATCAC
66 AACCCGATTCAAATCAC
*
46293910 CGGCACGTAGCCTGCTAGGTTTATAACCCGATTCAAATCACCGGCACGTAGCCTGCTAGGTTTAT
1 CGGCACATAGCCTGCTAGGTTTATAACCCGATTCAAATCACCGGCACGTAGCCTGCTAGGTTTAT
46293975 AACCCGATTCAAATCAC
66 AACCCGATTCAAATCAC
* *
46293992 TGGCACATAGCCTGCTAGGTTTATAACCCGATTCAAATCACCGGCACGTAGCCTACTAGG
1 CGGCACATAGCCTGCTAGGTTTATAACCCGATTCAAATCACCGGCACGTAGCCTGCTAGG
46294052 CGCTTAGCCT
Statistics
Matches: 130, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 130 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (82 bp):
CGGCACATAGCCTGCTAGGTTTATAACCCGATTCAAATCACCGGCACGTAGCCTGCTAGGTTTAT
AACCCGATTCAAATCAC
Found at i:46294909 original size:24 final size:25
Alignment explanation
Indices: 46294776--46295001 Score: 140
Period size: 25 Copynumber: 9.2 Consensus size: 25
46294766 ACACACCACA
* * * * *
46294776 GCTCTTATGAGCGTCCCGATAATAG
1 GCTCTCATGAGCTTCCCGTTATTTG
*
46294801 GCTCTCATGAGCTTCCCGTTATTTA
1 GCTCTCATGAGCTTCCCGTTATTTG
* * *
46294826 ACTCTTATGAGCATCCCGTTATTTG
1 GCTCTCATGAGCTTCCCGTTATTTG
** * *
46294851 GCTCTCCGGAGCTTCCTGATA-TTG
1 GCTCTCATGAGCTTCCCGTTATTTG
*
46294875 GCT-TGCATGAGCTTCCCG-AATTTG
1 GCTCT-CATGAGCTTCCCGTTATTTG
* * **
46294899 GCTCTCTTGAGCTTCTCGTT-TACG
1 GCTCTCATGAGCTTCCCGTTATTTG
* * *
46294923 ACTCGT-ATGAACTTCCCGATATTTG
1 GCTC-TCATGAGCTTCCCGTTATTTG
* **
46294948 GCTCGT-AAGAGCTTCCCGTTACATG
1 GCTC-TCATGAGCTTCCCGTTATTTG
* * *
46294973 GCTCACATGAGCTTCCTGTTATATG
1 GCTCTCATGAGCTTCCCGTTATTTG
46294998 GCTC
1 GCTC
46295002 GAAAGAGCTA
Statistics
Matches: 151, Mismatches: 43, Indels: 14
0.73 0.21 0.07
Matches are distributed among these distances:
23 2 0.01
24 48 0.32
25 101 0.67
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.35
Consensus pattern (25 bp):
GCTCTCATGAGCTTCCCGTTATTTG
Found at i:46294974 original size:25 final size:25
Alignment explanation
Indices: 46294946--46295017 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
46294936 TCCCGATATT
*
46294946 TGGCTCGTAAGAGCTTCCCGTTACA
1 TGGCTCGAAAGAGCTTCCCGTTACA
* * *
46294971 TGGCTC-ACATGAGCTTCCTGTTATA
1 TGGCTCGA-AAGAGCTTCCCGTTACA
*
46294996 TGGCTCGAAAGAGCTACCCGTT
1 TGGCTCGAAAGAGCTTCCCGTT
46295018 TATATACTCA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (25 bp):
TGGCTCGAAAGAGCTTCCCGTTACA
Found at i:46295000 original size:50 final size:51
Alignment explanation
Indices: 46294946--46295041 Score: 133
Period size: 50 Copynumber: 1.9 Consensus size: 51
46294936 TCCCGATATT
* * *
46294946 TGGCTCGTAAGAGCTTCCCG-TTACATGGCTCACATGAGC-TTCCTGTTATA
1 TGGCTCGAAAGAGCTACCCGTTTACAT-ACTCACATGAGCATTCCTGTTATA
*
46294996 TGGCTCGAAAGAGCTACCCGTTTATATACTCACATGAGCATTCCTG
1 TGGCTCGAAAGAGCTACCCGTTTACATACTCACATGAGCATTCCTG
46295042 AATATGAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
50 29 0.73
51 11 0.28
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (51 bp):
TGGCTCGAAAGAGCTACCCGTTTACATACTCACATGAGCATTCCTGTTATA
Found at i:46296891 original size:25 final size:25
Alignment explanation
Indices: 46296863--46296945 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
46296853 CTGATTAATA
* **
46296863 AGAAGCTCATGTGAGCTGAATAACG
1 AGAAGCTCATGCGAGCCAAATAACG
* *
46296888 AGAAGCTTATGCGAGCCAAATATCG
1 AGAAGCTCATGCGAGCCAAATAACG
* * * * *
46296913 GGAAGCTCAAGAGGGCCAAATATCG
1 AGAAGCTCATGCGAGCCAAATAACG
*
46296938 AAAAGCTC
1 AGAAGCTC
46296946 GTGAGAGCTG
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (25 bp):
AGAAGCTCATGCGAGCCAAATAACG
Found at i:46300033 original size:51 final size:50
Alignment explanation
Indices: 46299887--46300060 Score: 208
Period size: 51 Copynumber: 3.4 Consensus size: 50
46299877 TGATCAATGT
* * *
46299887 TATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGATC-AA-
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAAC
* * *
46299935 TATCATTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGC
1 TATC--T-GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAA-C
46299989 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCATAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCA-AAC
** *
46300040 TATCTTATACTCATAGTAGCC
1 TATCTGGTACACATAGTAGCC
46300061 CATATAATCC
Statistics
Matches: 107, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
48 4 0.04
51 94 0.88
52 5 0.05
54 4 0.04
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAAC
Found at i:46301225 original size:16 final size:17
Alignment explanation
Indices: 46301199--46301230 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
46301189 AGAAATTTCA
46301199 AATATTTCATATCATAT
1 AATATTTCATATCATAT
46301216 AATA-TTCATATCATA
1 AATATTTCATATCATA
46301231 AACCAATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
AATATTTCATATCATAT
Found at i:46313920 original size:21 final size:21
Alignment explanation
Indices: 46313881--46313919 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
46313871 TTATATGCCA
*
46313881 TATAAAAAGTAATTTAAAATT
1 TATAAAAAATAATTTAAAATT
46313902 TATAAAAAAT-ATTTAAAA
1 TATAAAAAATAATTTAAAA
46313920 AATAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (21 bp):
TATAAAAAATAATTTAAAATT
Found at i:46319490 original size:43 final size:42
Alignment explanation
Indices: 46319443--46319563 Score: 127
Period size: 42 Copynumber: 2.8 Consensus size: 42
46319433 AGACGTGGTA
* * *
46319443 TTACATGTAATCAAATAACGATGCCACTGTCCCAGGCAGAGTC
1 TTACACGTAATCAAAT-ACGATGCCAATGTCCCAGACAGAGTC
* * *
46319486 TTACACGTAATCATATACGATGCCAATGTCCTAGACATAGTC
1 TTACACGTAATCAAATACGATGCCAATGTCCCAGACAGAGTC
* *
46319528 TTACGCGTAAATCTCAAAT-CGATGCCAACGTCCCAG
1 TTACACGT-AA--TCAAATACGATGCCAATGTCCCAG
46319564 TCGTGGTCTT
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
42 29 0.45
43 16 0.25
44 15 0.23
45 5 0.08
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
TTACACGTAATCAAATACGATGCCAATGTCCCAGACAGAGTC
Found at i:46321145 original size:27 final size:25
Alignment explanation
Indices: 46321103--46321176 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 25
46321093 CCTGATATAT
46321103 GGCTCTTCAGAGCTTCCCGATTAAA
1 GGCTCTTCAGAGCTTCCCGATTAAA
* *
46321128 GGCTCTTTCATGAGCTTCTCGATTAATT
1 GGCTC-TTCA-GAGCTTCCCGATTAA-A
*
46321156 GGCTCTCCTA-AGCTTCCCGAT
1 GGCTCTTC-AGAGCTTCCCGAT
46321177 ACTGGCTCAT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
25 5 0.12
26 14 0.34
27 16 0.39
28 6 0.15
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (25 bp):
GGCTCTTCAGAGCTTCCCGATTAAA
Found at i:46321176 original size:26 final size:26
Alignment explanation
Indices: 46321103--46321176 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
46321093 CCTGATATAT
*
46321103 GGCTCTTCA-GAGCTTCCCGATTAAA
1 GGCTCTTCATAAGCTTCCCGATTAAA
* * *
46321128 GGCTCTTTCATGAGCTTCTCGATTAATT
1 GGCTC-TTCATAAGCTTCCCGATTAA-A
*
46321156 GGCTC-TCCTAAGCTTCCCGAT
1 GGCTCTTCATAAGCTTCCCGAT
46321177 ACTGGCTCAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 5 0.12
26 17 0.41
27 14 0.34
28 5 0.12
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (26 bp):
GGCTCTTCATAAGCTTCCCGATTAAA
Found at i:46321234 original size:25 final size:25
Alignment explanation
Indices: 46321203--46321258 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
46321193 TTTCCAATAT
46321203 TGGCTCATATAAGCTTCCCGTTACA
1 TGGCTCATATAAGCTTCCCGTTACA
* *
46321228 TGGCTCATATAAGCTTCTCGTTATA
1 TGGCTCATATAAGCTTCCCGTTACA
46321253 TGGCTC
1 TGGCTC
46321259 GAAAGAGCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (25 bp):
TGGCTCATATAAGCTTCCCGTTACA
Found at i:46321267 original size:25 final size:26
Alignment explanation
Indices: 46321203--46321284 Score: 93
Period size: 25 Copynumber: 3.3 Consensus size: 26
46321193 TTTCCAATAT
* *
46321203 TGGCTC-ATATAAGCTTCCCGTTACA
1 TGGCTCGATATAAGCTTCTCGTTATA
46321228 TGGCTC-ATATAAGCTTCTCGTTATA
1 TGGCTCGATATAAGCTTCTCGTTATA
46321253 TGGCTCGA-A-AGAGCTTCTCGTT-TA
1 TGGCTCGATATA-AGCTTCTCGTTATA
46321277 TGTGCTCG
1 TG-GCTCG
46321285 TATGAGTATT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.10
25 46 0.88
26 1 0.02
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (26 bp):
TGGCTCGATATAAGCTTCTCGTTATA
Found at i:46322554 original size:33 final size:32
Alignment explanation
Indices: 46322497--46322593 Score: 85
Period size: 28 Copynumber: 3.1 Consensus size: 32
46322487 CATGCAGAAT
* * * *
46322497 CAGTCTGGGCCTGAGCCCTATACAGTATCACTA
1 CAGTGTGGGCCTTAACCCAATACAGTATCA-TA
*
46322530 CAGTGTGGGCCTTAACCCATTACAGTA--AT-
1 CAGTGTGGGCCTTAACCCAATACAGTATCATA
*
46322559 -AGTGTGGTCCTTAACCCAATACAGTAATCAATA
1 CAGTGTGGGCCTTAACCCAATACAGT-ATC-ATA
46322592 CA
1 CA
46322594 ATGCAGTGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
28 23 0.45
29 1 0.02
30 1 0.02
31 1 0.02
32 2 0.04
33 22 0.43
34 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (32 bp):
CAGTGTGGGCCTTAACCCAATACAGTATCATA
Found at i:46322571 original size:28 final size:28
Alignment explanation
Indices: 46322531--46322586 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
46322521 GTATCACTAC
*
46322531 AGTGTGGGCCTTAACCCATTACAGTAAT
1 AGTGTGGGCCTTAACCCAATACAGTAAT
*
46322559 AGTGTGGTCCTTAACCCAATACAGTAAT
1 AGTGTGGGCCTTAACCCAATACAGTAAT
46322587 CAATACAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (28 bp):
AGTGTGGGCCTTAACCCAATACAGTAAT
Found at i:46322735 original size:26 final size:26
Alignment explanation
Indices: 46322697--46322798 Score: 98
Period size: 26 Copynumber: 3.9 Consensus size: 26
46322687 CACCAATGTC
* * *
46322697 GCAGTAAAGCTACCAGTAATAGTGAT
1 GCAGCAAAGCTACCAGTAACAGTAAT
*
46322723 GCAGCAAAACTACCAGTAACAGTAAT
1 GCAGCAAAGCTACCAGTAACAGTAAT
* *
46322749 GCAGCCAAGCTGCCAGTAACAGTATAT
1 GCAGCAAAGCTACCAGTAACAGTA-AT
** * *
46322776 GTGGCAAAGCCAGCAGT-ACAGTA
1 GCAGCAAAGCTACCAGTAACAGTA
46322799 TACTTCCCCT
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
26 49 0.79
27 13 0.21
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
GCAGCAAAGCTACCAGTAACAGTAAT
Found at i:46323708 original size:12 final size:12
Alignment explanation
Indices: 46323691--46323732 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
46323681 ATCCCAATAT
46323691 TCTCTCCTCAAA
1 TCTCTCCTCAAA
*
46323703 TCTCTCC-AAATA
1 TCTCTCCTCAA-A
*
46323715 TCCCTCCTCAAA
1 TCTCTCCTCAAA
46323727 TCTCTC
1 TCTCTC
46323733 TATGACCAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 2 0.08
12 20 0.83
13 2 0.08
ACGTcount: A:0.24, C:0.43, G:0.00, T:0.33
Consensus pattern (12 bp):
TCTCTCCTCAAA
Found at i:46325908 original size:21 final size:22
Alignment explanation
Indices: 46325871--46325911 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
46325861 TATGGTAGTT
46325871 TAAAACAAATAATGTAAATAAA
1 TAAAACAAATAATGTAAATAAA
46325893 TAAAA-AAATTAA-GTAAATA
1 TAAAACAAA-TAATGTAAATA
46325912 TTAGGTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.24
Consensus pattern (22 bp):
TAAAACAAATAATGTAAATAAA
Found at i:46328267 original size:55 final size:55
Alignment explanation
Indices: 46328195--46328307 Score: 208
Period size: 55 Copynumber: 2.1 Consensus size: 55
46328185 CTCCTCTCAA
* *
46328195 TCTCACTACTTGGCACAATCATACCAAATTCTTACCCATGATACTCTCTTCTCGG
1 TCTCACTACTTGGCACAATCATACCAAATTCTTACCCATGAAACTCTCATCTCGG
46328250 TCTCACTACTTGGCACAATCATACCAAATTCTTACCCATGAAACTCTCATCTCGG
1 TCTCACTACTTGGCACAATCATACCAAATTCTTACCCATGAAACTCTCATCTCGG
46328305 TCT
1 TCT
46328308 TATTTATCTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.27, C:0.33, G:0.09, T:0.32
Consensus pattern (55 bp):
TCTCACTACTTGGCACAATCATACCAAATTCTTACCCATGAAACTCTCATCTCGG
Found at i:46330224 original size:25 final size:25
Alignment explanation
Indices: 46330185--46330254 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
46330175 CGGACACACC
* *
46330185 ATAGCTCGCAAGAGCATCCCGTTA-
1 ATAGCTCTCATGAGCATCCCGTTAT
*
46330209 ATTAGCTCTCATGAGCATTCCGTTAT
1 A-TAGCTCTCATGAGCATCCCGTTAT
* *
46330235 ATGGCTCTCATGAGCTTCCC
1 ATAGCTCTCATGAGCATCCC
46330255 AAATAATGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (25 bp):
ATAGCTCTCATGAGCATCCCGTTAT
Found at i:46330263 original size:25 final size:25
Alignment explanation
Indices: 46330213--46330268 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
46330203 CCGTTAATTA
***
46330213 GCTCTCATGAGCATTCCGTTATATG
1 GCTCTCATGAGCATTCCCAAATATG
46330238 GCTCTCATGAGC-TTCCCAAATAATG
1 GCTCTCATGAGCATTCCCAAAT-ATG
*
46330263 GTTCTC
1 GCTCTC
46330269 TTGAACTTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (25 bp):
GCTCTCATGAGCATTCCCAAATATG
Found at i:46332494 original size:51 final size:51
Alignment explanation
Indices: 46332423--46332635 Score: 347
Period size: 51 Copynumber: 4.2 Consensus size: 51
46332413 ATCACATTTA
* *
46332423 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCACTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
* * * *
46332474 TCACTTGTCACCGATTAGATAAGTGTTGCT-AAGCTACCACTTATCACTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
* *
46332524 TCACTTATCACTGATCAGATAAGTGCAGTTAAAGCTACCACTTATCACTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
46332575 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
46332626 TCACTTATCA
1 TCACTTATCA
46332636 GAAGTACTCA
Statistics
Matches: 149, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
50 43 0.29
51 106 0.71
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (51 bp):
TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
Found at i:46332538 original size:101 final size:102
Alignment explanation
Indices: 46332423--46332635 Score: 347
Period size: 101 Copynumber: 2.1 Consensus size: 102
46332413 ATCACATTTA
* * *
46332423 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCACTTGTCACTTGTCACCGA
1 TCACTTATCACTGATCAGATAAGTGCAGCTAAAACTACCACTTATCACTTGTCACTTATCACCGA
* *
46332488 TTAGATAAGTGTTGCT-AAGCTACCACTTATCACTTG
66 TCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
* * *
46332524 TCACTTATCACTGATCAGATAAGTGCAGTTAAAGCTACCACTTATCACTTGTCACTTATCACTGA
1 TCACTTATCACTGATCAGATAAGTGCAGCTAAAACTACCACTTATCACTTGTCACTTATCACCGA
46332589 TCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
66 TCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
46332626 TCACTTATCA
1 TCACTTATCA
46332636 GAAGTACTCA
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
101 73 0.71
102 30 0.29
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (102 bp):
TCACTTATCACTGATCAGATAAGTGCAGCTAAAACTACCACTTATCACTTGTCACTTATCACCGA
TCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
Found at i:46332731 original size:17 final size:17
Alignment explanation
Indices: 46332709--46332741 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
46332699 TATTCTCAAT
46332709 TCATCA-ACAAATATATC
1 TCATCATAC-AATATATC
46332726 TCATCATACAATATAT
1 TCATCATACAATATAT
46332742 AATTCATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
TCATCATACAATATATC
Found at i:46338884 original size:19 final size:18
Alignment explanation
Indices: 46338837--46338894 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
46338827 AATGTTTAAA
*
46338837 TTTAATAATTTTAATATATT
1 TTTAAT-ATTTTAAAAT-TT
46338857 TTT-ATATTTTAAAATTT
1 TTTAATATTTTAAAATTT
46338874 TTATAATATTTT-AAATTT
1 TT-TAATATTTTAAAATTT
46338892 TTT
1 TTT
46338895 TGTTTTATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
17 5 0.14
18 18 0.51
19 9 0.26
20 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTAATATTTTAAAATTT
Found at i:46338886 original size:26 final size:27
Alignment explanation
Indices: 46338831--46338892 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
46338821 AAATTGAATG
46338831 TTTAAA-TTTAATAATTTTAATATATT
1 TTTAAATTTTAATAATTTTAATATATT
* *
46338857 TTTATATTTTAA-AATTTTTATA-ATAT
1 TTTAAATTTTAATAATTTTAATATAT-T
46338883 TTTAAATTTT
1 TTTAAATTTT
46338893 TTTGTTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 2 0.06
26 24 0.77
27 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (27 bp):
TTTAAATTTTAATAATTTTAATATATT
Done.