Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 164 of 190
Found at i:47870870 original size:94 final size:96
Alignment explanation
Indices: 47870666--47870939 Score: 310
Period size: 94 Copynumber: 2.9 Consensus size: 96
47870656 AGTAACCCTA
* *
47870666 AACCCCAAACCCTAATTTATTTGAGTTTTTACTTAAAAACCCTAAACACTAAACCATTAACTAAT
1 AACCCTAAACCCTAATTTATTTGA-TTTTTACTTAAAAACCCTAAACACTAAACCACTAACTAAT
*
47870731 TTATTAAAAATTTATAATTAATTTACTCAAGT
65 TTATTAAAAATTTATAATTAAATTACTCAAGT
* * * *
47870763 AACTCTAAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTTAACTCTAAACC-CTAA-TATGA
1 AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCACTAACTA--A
* *
47870826 TTT-TT-AAATTTTTTAATTAAATTACTCAAGT
64 TTTATTAAAAATTTATAATTAAATTACTCAAGT
* * * ** * *
47870857 AACCCTAAGCCCTAATTTAATTGATTTTTTCTTAAAAACAATAAACACGAAA--ACTAATCCAAT
1 AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCACTAA-CTAAT
*
47870920 TT-TGAAAAATTTATAATTAA
65 TTATTAAAAATTTATAATTAA
47870940 TTTAATTGAC
Statistics
Matches: 149, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
93 9 0.06
94 81 0.54
95 6 0.04
96 31 0.21
97 22 0.15
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.38
Consensus pattern (96 bp):
AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCACTAACTAATT
TATTAAAAATTTATAATTAAATTACTCAAGT
Found at i:47871016 original size:17 final size:17
Alignment explanation
Indices: 47870994--47871035 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
47870984 TTTTCTCTTA
47870994 AACCCTAACTCTAACCT
1 AACCCTAACTCTAACCT
47871011 AACCCTAACTCTAACCT
1 AACCCTAACTCTAACCT
47871028 AACCCTAA
1 AACCCTAA
47871036 ACCAATAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.21
Consensus pattern (17 bp):
AACCCTAACTCTAACCT
Found at i:47871017 original size:6 final size:6
Alignment explanation
Indices: 47870994--47871035 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
47870984 TTTTCTCTTA
* *
47870994 AACCCT AACTCT AA-CCT AACCCT AACTCT AA-CCT AACCCT AA
1 AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT AA
47871036 ACCAATAACC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 8 0.27
6 22 0.73
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.21
Consensus pattern (6 bp):
AACCCT
Found at i:47871035 original size:11 final size:11
Alignment explanation
Indices: 47870994--47871035 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
47870984 TTTTCTCTTA
47870994 AACCCTAACTCT
1 AACCCTAAC-CT
47871006 AA-CCTAACCCT
1 AACCCTAA-CCT
*
47871017 AACTCTAACCT
1 AACCCTAACCT
47871028 AACCCTAA
1 AACCCTAA
47871036 ACCAATAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 19 0.73
12 7 0.27
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.21
Consensus pattern (11 bp):
AACCCTAACCT
Found at i:47876432 original size:38 final size:39
Alignment explanation
Indices: 47876400--47876575 Score: 164
Period size: 38 Copynumber: 4.3 Consensus size: 39
47876390 AAATTTATTT
*
47876400 AAAATTAAAAAAGTATTTT-AAAATA-TTT-AAATTAAA
1 AAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTATA
*
47876436 AAAATT-TAAAAGTATTTTAAAAATATTTTAAAATTA-A
1 AAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTATA
*
47876473 AAAATTTAAAAAGTATTTTAAAAAATATTTTAAAAATATTTTAAAATTA
1 AAAATTAAAAAAGTATTTT-AAAAATATTTT--AAA-A--TT---A-TA
*
47876522 AAAATAATAAAAAAGTATTTTAAAAATATTTTAAAATTACA
1 AAAAT--TAAAAAAGTATTTTAAAAATATTTTAAAATTATA
47876563 AAAATTTAAAAAA
1 AAAA-TTAAAAAA
47876576 TAAATATATT
Statistics
Matches: 118, Mismatches: 4, Indels: 32
0.77 0.03 0.21
Matches are distributed among these distances:
35 11 0.09
36 12 0.10
37 10 0.08
38 17 0.14
39 11 0.09
40 7 0.06
41 8 0.07
42 3 0.03
44 2 0.02
45 2 0.02
47 2 0.02
48 3 0.03
49 6 0.05
50 11 0.09
51 13 0.11
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (39 bp):
AAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTATA
Found at i:47876456 original size:11 final size:11
Alignment explanation
Indices: 47876431--47876557 Score: 93
Period size: 11 Copynumber: 12.5 Consensus size: 11
47876421 AATATTTAAA
*
47876431 TTAAAAA-AAT
1 TTAAAAATATT
*
47876441 TTAAAAGTATT
1 TTAAAAATATT
47876452 TTAAAAATATT
1 TTAAAAATATT
47876463 TT--AAA-A--
1 TTAAAAATATT
47876469 TTAAAAA-A-T
1 TTAAAAATATT
47876478 TTAAAAAGTATT
1 TTAAAAA-TATT
47876490 TTAAAAAATATT
1 TT-AAAAATATT
47876502 TTAAAAATATT
1 TTAAAAATATT
47876513 TT--AAA-A--
1 TTAAAAATATT
*
47876519 TTAAAAATA-A
1 TTAAAAATATT
*
47876529 TAAAAAAGTATT
1 TTAAAAA-TATT
47876541 TTAAAAATATT
1 TTAAAAATATT
47876552 TTAAAA
1 TTAAAA
47876558 TTACAAAAAT
Statistics
Matches: 97, Mismatches: 6, Indels: 27
0.75 0.05 0.21
Matches are distributed among these distances:
6 4 0.04
8 9 0.09
9 14 0.14
10 12 0.12
11 38 0.39
12 15 0.15
13 5 0.05
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (11 bp):
TTAAAAATATT
Found at i:47876502 original size:23 final size:22
Alignment explanation
Indices: 47876431--47876518 Score: 79
Period size: 23 Copynumber: 3.8 Consensus size: 22
47876421 AATATTTAAA
* **
47876431 TTAAAAA-AATTTAAAAGTATT
1 TTAAAAATATTTTAAAAAAATT
*
47876452 TTAAAAATATTTTAAAATTAAAAAAT
1 TTAAAAATATTTT--AA--AAAAATT
47876478 TTAAAAAGTATTTTAAAAAATATT
1 TTAAAAA-TATTTTAAAAAA-ATT
47876502 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
47876519 TTAAAAATAA
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
21 7 0.13
22 4 0.07
23 14 0.25
24 11 0.20
25 2 0.04
26 11 0.20
27 6 0.11
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
TTAAAAATATTTTAAAAAAATT
Found at i:47876515 original size:50 final size:50
Alignment explanation
Indices: 47876440--47876557 Score: 193
Period size: 50 Copynumber: 2.4 Consensus size: 50
47876430 ATTAAAAAAA
* * *
47876440 TTTAAAAGTATTTTAAAAATATTTTAAAATTAAAAA-ATTTAAAAAGTAT
1 TTTAAAAATATTTTAAAAATATTTTAAAATTAAAAATAATAAAAAAGTAT
47876489 TTTAAAAAATATTTTAAAAATATTTTAAAATTAAAAATAATAAAAAAGTAT
1 TTT-AAAAATATTTTAAAAATATTTTAAAATTAAAAATAATAAAAAAGTAT
47876540 TTTAAAAATATTTTAAAA
1 TTTAAAAATATTTTAAAA
47876558 TTACAAAAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
49 3 0.05
50 47 0.73
51 14 0.22
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.40
Consensus pattern (50 bp):
TTTAAAAATATTTTAAAAATATTTTAAAATTAAAAATAATAAAAAAGTAT
Found at i:47876524 original size:17 final size:17
Alignment explanation
Indices: 47876502--47876587 Score: 57
Period size: 17 Copynumber: 4.8 Consensus size: 17
47876492 AAAAAATATT
*
47876502 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
**
47876519 TTAAAAATAATAAAAAAGTA
1 TTAAAAAT-ATTTAAAA--A
*
47876539 TTTTAAAAATATTTTAAAA
1 --TTAAAAATATTTAAAAA
47876558 TTACAAAA-ATTTAAAAA
1 TTA-AAAATATTTAAAAA
* *
47876575 ATAAATATATTTA
1 TTAAAAATATTTA
47876588 TTATATCGGG
Statistics
Matches: 53, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
16 3 0.06
17 26 0.49
18 9 0.17
19 1 0.02
20 1 0.02
21 5 0.09
22 8 0.15
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:47876574 original size:39 final size:39
Alignment explanation
Indices: 47876436--47876577 Score: 150
Period size: 39 Copynumber: 3.6 Consensus size: 39
47876426 TTAAATTAAA
* * **
47876436 AAAATTTAAAAGTATTTTAAAAATATTTT--AAA-ATTAA
1 AAAA-TTAAAAATATTTAAAAAATATTTTAAAAATATTTT
47876473 AAAATTTAAAAAGTATTTTAAAAAATATTTTAAAAATATTTT
1 AAAA-TTAAAAA-TA-TTTAAAAAATATTTTAAAAATATTTT
*
47876515 AAAATTAAAAATA-ATAAAAAAGTATTTTAAAAATATTTT
1 AAAATTAAAAATATTTAAAAAA-TATTTTAAAAATATTTT
47876554 AAAATTACAAAA-ATTTAAAAAATA
1 AAAATTA-AAAATATTTAAAAAATA
47876578 AATATATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
37 11 0.12
38 9 0.10
39 41 0.45
40 13 0.14
41 10 0.11
42 7 0.08
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (39 bp):
AAAATTAAAAATATTTAAAAAATATTTTAAAAATATTTT
Found at i:47876575 original size:50 final size:52
Alignment explanation
Indices: 47876443--47876578 Score: 149
Period size: 50 Copynumber: 2.7 Consensus size: 52
47876433 AAAAAAATTT
* *** *
47876443 AAAAGTATTTTAAAAATATTTTAAAATTAAAAAAT-TT-AAAAAGTATTTTA
1 AAAAATATTTTAAAAATATACAAAAATTAAAAAATAATAAAAAAGTATTTTA
***
47876493 AAAAATATTTTAAAAATATTTTAAAATT-AAAAATAATAAAAAAGTATTTT-
1 AAAAATATTTTAAAAATATACAAAAATTAAAAAATAATAAAAAAGTATTTTA
47876543 AAAAATATTTT-AAAAT-TACAAAAATTTAAAAAATAA
1 AAAAATATTTTAAAAATATACAAAAA-TTAAAAAATAA
47876579 ATATATTTAT
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
48 5 0.06
49 13 0.17
50 47 0.61
51 12 0.16
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (52 bp):
AAAAATATTTTAAAAATATACAAAAATTAAAAAATAATAAAAAAGTATTTTA
Found at i:47878396 original size:18 final size:18
Alignment explanation
Indices: 47878373--47878409 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
47878363 TCATCATTAT
47878373 TATTAGTATTAT-TATTTA
1 TATTAGT-TTATATATTTA
47878391 TATTAGTTTATATATTTA
1 TATTAGTTTATATATTTA
47878409 T
1 T
47878410 CTTCATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTAGTTTATATATTTA
Found at i:47889642 original size:24 final size:24
Alignment explanation
Indices: 47889615--47889664 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
47889605 GCCCATAATA
47889615 GGTAGCTCCAAAAAGCAATTAACG
1 GGTAGCTCCAAAAAGCAATTAACG
* * *
47889639 GGTAGCTCCGAAGAGCACTTAACG
1 GGTAGCTCCAAAAAGCAATTAACG
47889663 GG
1 GG
47889665 AAACACCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.22, G:0.28, T:0.16
Consensus pattern (24 bp):
GGTAGCTCCAAAAAGCAATTAACG
Found at i:47893823 original size:124 final size:122
Alignment explanation
Indices: 47893598--47893835 Score: 352
Period size: 124 Copynumber: 1.9 Consensus size: 122
47893588 ATGTGGGCTT
* *
47893598 TTGTAACTTCATGAAAAAGGCTTCAAATAAGACTTTGATGTATGCGTTGGCTCCTTGAAGTTTTT
1 TTGTAACTTCATGAAAAAGGCTTCAAATAAGACTTTGATGTATGCGTTGGCTCCTTCAAGATTTT
* *
47893663 TAATTTCTACATGCCTATGGGTTTTCTTAAATAAAGTTGATAATTTTTCAATTTCTA
66 CAATTTCTACATGCCTATGGGCTTTCTTAAATAAAGTTGATAATTTTTCAATTTCTA
* * * * *
47893720 TTGTAACTTCATGACAAAGGCTTCAAGTAAGACTTTGATGGTTGTGTGTTGGCTTCTTCAAGATT
1 TTGTAACTTCATGAAAAAGGCTTCAAATAAGACTTTGAT-G-TATGCGTTGGCTCCTTCAAGATT
*
47893785 TTCAATTTCTACATGCCTATGGGCCTTT-TTAAATAAAGTTGATAGTTTTTC
64 TTCAATTTCTACATGCCTATGGG-CTTTCTTAAATAAAGTTGATAATTTTTC
47893836 TAGTTGGTCA
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
122 37 0.36
123 1 0.01
124 62 0.60
125 3 0.03
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (122 bp):
TTGTAACTTCATGAAAAAGGCTTCAAATAAGACTTTGATGTATGCGTTGGCTCCTTCAAGATTTT
CAATTTCTACATGCCTATGGGCTTTCTTAAATAAAGTTGATAATTTTTCAATTTCTA
Found at i:47895353 original size:60 final size:60
Alignment explanation
Indices: 47895260--47895382 Score: 228
Period size: 60 Copynumber: 2.0 Consensus size: 60
47895250 GGTATATAGA
47895260 TGGGTTGCCTCCCCCACCCATGCCATCTGGAAGTTCTTAATAGGCCTATCTATAATTCAT
1 TGGGTTGCCTCCCCCACCCATGCCATCTGGAAGTTCTTAATAGGCCTATCTATAATTCAT
* *
47895320 TGGGTTGCCTCCCCCACCCATGCCATTTGGAAGTTTTTAATAGGCCTATCTATAATTCAT
1 TGGGTTGCCTCCCCCACCCATGCCATCTGGAAGTTCTTAATAGGCCTATCTATAATTCAT
47895380 TGG
1 TGG
47895383 TCTCTTGTTA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (60 bp):
TGGGTTGCCTCCCCCACCCATGCCATCTGGAAGTTCTTAATAGGCCTATCTATAATTCAT
Found at i:47902292 original size:21 final size:21
Alignment explanation
Indices: 47902224--47902292 Score: 52
Period size: 21 Copynumber: 3.3 Consensus size: 21
47902214 GATTTTAAGA
*
47902224 TTTTAGGTTTAAAGTTTA-AG
1 TTTTAGGGTTAAAGTTTAGAG
* * * *
47902244 ATATT-GAGGTTAAGGTCTAGGG
1 -TTTTAG-GGTTAAAGTTTAGAG
*
47902266 TCTTAGGGTTAAAGTTTAGAG
1 TTTTAGGGTTAAAGTTTAGAG
47902287 TTTTAG
1 TTTTAG
47902293 CATTTATTTA
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
20 1 0.03
21 32 0.91
22 2 0.06
ACGTcount: A:0.28, C:0.03, G:0.28, T:0.42
Consensus pattern (21 bp):
TTTTAGGGTTAAAGTTTAGAG
Found at i:47905229 original size:12 final size:12
Alignment explanation
Indices: 47905209--47905239 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
47905199 CACATATTCC
47905209 TTCTTCTTTTTT
1 TTCTTCTTTTTT
*
47905221 TTTTTCTTTTTT
1 TTCTTCTTTTTT
47905233 TTCTTCT
1 TTCTTCT
47905240 GTTATTGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTCTTCTTTTTT
Found at i:47906293 original size:17 final size:18
Alignment explanation
Indices: 47906257--47906295 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
47906247 ATGTATTAGT
**
47906257 AAGACTAAAAACTTGTAC
1 AAGACTAAAAACTTCCAC
47906275 AAGAC-AAAAACTTCCAC
1 AAGACTAAAAACTTCCAC
47906292 AAGA
1 AAGA
47906296 GAAGACTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.54, C:0.21, G:0.10, T:0.15
Consensus pattern (18 bp):
AAGACTAAAAACTTCCAC
Found at i:47908539 original size:35 final size:34
Alignment explanation
Indices: 47908480--47908573 Score: 93
Period size: 33 Copynumber: 2.8 Consensus size: 34
47908470 TGATTTGACG
* * * *
47908480 GATAAGACCATGGTTGGACCATGGCAATTTTTAAAT
1 GATAAGACCATAGCTGGGCTATGGCAA-TTTT-AAT
47908516 G-TAAGACCATAGCTGGGCTATGGC-ATTTTAAT
1 GATAAGACCATAGCTGGGCTATGGCAATTTTAAT
* * *
47908548 GAAAAGACCATAACTGGGTTATGGCA
1 GATAAGACCATAGCTGGGCTATGGCA
47908574 CCTTGAACGT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
32 4 0.08
33 24 0.49
34 1 0.02
35 19 0.39
36 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (34 bp):
GATAAGACCATAGCTGGGCTATGGCAATTTTAAT
Found at i:47908588 original size:33 final size:32
Alignment explanation
Indices: 47908516--47908591 Score: 80
Period size: 33 Copynumber: 2.3 Consensus size: 32
47908506 ATTTTTAAAT
* * * *
47908516 GTAAGACCATAGCTGGGCTATGGCATTTTAAT
1 GTAAGACCATAACTGGGCTATGGCACTTGAAC
* *
47908548 GAAAAGACCATAACTGGGTTATGGCACCTTGAAC
1 G-TAAGACCATAACTGGGCTATGGCA-CTTGAAC
47908582 GTAAGACCAT
1 GTAAGACCAT
47908592 GGTTGAACCA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
32 1 0.03
33 29 0.83
34 5 0.14
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (32 bp):
GTAAGACCATAACTGGGCTATGGCACTTGAAC
Found at i:47908708 original size:105 final size:105
Alignment explanation
Indices: 47908515--47908711 Score: 270
Period size: 105 Copynumber: 1.9 Consensus size: 105
47908505 AATTTTTAAA
* * **
47908515 TGTAAGACCATAGCTGGGCTATGGCATTTTAATGAAAAGACCATAACTGGGTTATGGCACCTTGA
1 TGTAAGACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGGGTCATGGCACCTCAA
**
47908580 ACGTAAGACCATGGTTGAACCATGACAGTATAAATACATG
66 ACGTAAGACCATGGCAGAACCATGACAGTATAAATACATG
* *
47908620 TGTAAGACCATAGCTGGGCTATGGCATTCTGATGATAAGACCATAACTGGGTCATGGCA-CTACA
1 TGTAAGACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGGGTCATGGCACCT-CA
* * **
47908684 AATGTAAGTCCATGGCAGGGCCATGACA
65 AACGTAAGACCATGGCAGAACCATGACA
47908712 ATGCATATGT
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
104 2 0.03
105 77 0.97
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24
Consensus pattern (105 bp):
TGTAAGACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGGGTCATGGCACCTCAA
ACGTAAGACCATGGCAGAACCATGACAGTATAAATACATG
Found at i:47910287 original size:27 final size:25
Alignment explanation
Indices: 47910237--47910303 Score: 71
Period size: 27 Copynumber: 2.6 Consensus size: 25
47910227 AAAATCTATG
*
47910237 ATATTAATATTGAAAATATATTAAA
1 ATATTAATATTAAAAATATATTAAA
* *
47910262 ATATTAATAAATTAAAAATATGTTAAG
1 ATATTAAT--ATTAAAAATATATTAAA
*
47910289 TTATTTAATATTAAA
1 ATA-TTAATATTAAA
47910304 TTAAAAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 8 0.23
26 6 0.17
27 16 0.46
28 5 0.14
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
ATATTAATATTAAAAATATATTAAA
Found at i:47910472 original size:26 final size:26
Alignment explanation
Indices: 47910450--47910500 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
47910440 CAGTAATTGG
*
47910450 TTTGATCAATTG-ATTCTATTAATTAA
1 TTTGATCAACTGAATT-TATTAATTAA
47910476 TTTGATCAACTGAATTTATTAATTA
1 TTTGATCAACTGAATTTATTAATTA
47910501 TTTATTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.49
Consensus pattern (26 bp):
TTTGATCAACTGAATTTATTAATTAA
Found at i:47911875 original size:2 final size:2
Alignment explanation
Indices: 47911868--47911905 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
47911858 AATTTAAAGT
47911868 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
47911906 CACTATTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:47912933 original size:6 final size:6
Alignment explanation
Indices: 47912922--47912951 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
47912912 AAAATTTGTG
47912922 ATAATT ATAATT ATAATT ATAATTT ATAAT
1 ATAATT ATAATT ATAATT ATAA-TT ATAAT
47912952 GATTAGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATAATT
Found at i:47918869 original size:20 final size:21
Alignment explanation
Indices: 47918831--47918869 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
47918821 TGATAATAGT
* *
47918831 TAAAATTAATTATTGTTTAAA
1 TAAAATTAATTAGTATTTAAA
47918852 TAAAATT-ATTAGTATTTA
1 TAAAATTAATTAGTATTTA
47918870 TATTTAAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (21 bp):
TAAAATTAATTAGTATTTAAA
Found at i:47923440 original size:16 final size:16
Alignment explanation
Indices: 47923401--47923449 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
47923391 TATATTCGGT
* *
47923401 GATTTTGTTATTTTAC
1 GATTTTATTATTTTAA
47923417 GATTTTTATTATTTTAA
1 GA-TTTTATTATTTTAA
*
47923434 GATTTTATCATTTTAA
1 GATTTTATTATTTTAA
47923450 AATATTGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.27, C:0.04, G:0.08, T:0.61
Consensus pattern (16 bp):
GATTTTATTATTTTAA
Found at i:47924421 original size:22 final size:23
Alignment explanation
Indices: 47924393--47924437 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
47924383 ATGCAATCGT
47924393 AGATATGA-TCTGTAATCTTAGA
1 AGATATGATTCTGTAATCTTAGA
*
47924415 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTCTGTAATCTTAGA
47924438 TATTTGATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTCTGTAATCTTAGA
Found at i:47926927 original size:17 final size:17
Alignment explanation
Indices: 47926875--47926927 Score: 52
Period size: 19 Copynumber: 3.0 Consensus size: 17
47926865 TATGGAAACA
* *
47926875 TAATCTTCGAGGATATG
1 TAATCTTAGAAGATATG
* *
47926892 CAATCGTAGATATGATATG
1 TAATCTTAGA-A-GATATG
47926911 TAATCTTAGAAGATATG
1 TAATCTTAGAAGATATG
47926928 ATTTTGTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
17 13 0.46
18 1 0.04
19 14 0.50
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (17 bp):
TAATCTTAGAAGATATG
Found at i:47926927 original size:22 final size:23
Alignment explanation
Indices: 47926899--47926943 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
47926889 ATGCAATCGT
47926899 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
47926921 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
47926944 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:47926953 original size:22 final size:23
Alignment explanation
Indices: 47926909--47926953 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
47926899 AGATATGATA
*
47926909 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
47926932 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
47926954 GTAGATACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:47932241 original size:30 final size:31
Alignment explanation
Indices: 47932207--47932270 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
47932197 ATCCATATTA
* * *
47932207 TGGAAAGTCAAATATCTGGGTATC-AAATAT
1 TGGAAAGTCAAAGATATAGGTATCGAAATAT
47932237 TGGAAAGTCAAAGATATAGGTATCGAAATAT
1 TGGAAAGTCAAAGATATAGGTATCGAAATAT
47932268 TGG
1 TGG
47932271 CATAAGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 21 0.70
31 9 0.30
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (31 bp):
TGGAAAGTCAAAGATATAGGTATCGAAATAT
Found at i:47932247 original size:15 final size:16
Alignment explanation
Indices: 47932207--47932248 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
47932197 ATCCATATTA
47932207 TGGAAAGTCAAATATC
1 TGGAAAGTCAAATATC
**
47932223 TGGGTA-TCAAATAT-
1 TGGAAAGTCAAATATC
47932237 TGGAAAGTCAAA
1 TGGAAAGTCAAA
47932249 GATATAGGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
14 4 0.19
15 13 0.62
16 4 0.19
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (16 bp):
TGGAAAGTCAAATATC
Found at i:47935467 original size:85 final size:85
Alignment explanation
Indices: 47935324--47935579 Score: 350
Period size: 85 Copynumber: 3.0 Consensus size: 85
47935314 ACCACAGCTG
* * *
47935324 ATTTATAATTACTGCCACTTGTTGTGGGTGCACAATATATTTGCAAATTAAACAAACTGCCACTT
1 ATTTATAATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTT
*
47935389 GGTTCATGATCGAACCACAT
66 GGTTCATAATCGAACCACAT
* * * **
47935409 ATTTATAGTTACTTCCACTTGCTGTGAGTATACAACATATTTGCAGATTAAACAAACTGCCACTT
1 ATTTATAATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTT
*
47935474 GGTTCATTATCGAACCACACT
66 GGTTCATAATCGAACCACA-T
** ** **
47935495 ATTTGCAATTACTGCTGCTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTAACACTT
1 ATTTATAATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTT
*
47935560 GGTTCATAATCGAATCACAT
66 GGTTCATAATCGAACCACAT
47935580 TGTTTGCAGA
Statistics
Matches: 148, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
85 76 0.51
86 72 0.49
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.33
Consensus pattern (85 bp):
ATTTATAATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTT
GGTTCATAATCGAACCACAT
Found at i:47935587 original size:86 final size:85
Alignment explanation
Indices: 47935330--47935579 Score: 338
Period size: 86 Copynumber: 2.9 Consensus size: 85
47935320 GCTGATTTAT
* * *
47935330 AATTACTGCCACTTGTTGTGGGTGCACAATATATTTGCAAATTAAACAAACTGCCACTTGGTTCA
1 AATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTTGGTTCA
* **
47935395 TGATCGAACCACATATTTAT
66 TAATCGAACCACATATTTGC
* * * **
47935415 AGTTACTTCCACTTGCTGTGAGTATACAACATATTTGCAGATTAAACAAACTGCCACTTGGTTCA
1 AATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTTGGTTCA
*
47935480 TTATCGAACCACACTATTTGC
66 TAATCGAACCACA-TATTTGC
** **
47935501 AATTACTGCTGCTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTAACACTTGGTTCA
1 AATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTTGGTTCA
*
47935566 TAATCGAATCACAT
66 TAATCGAACCACAT
47935580 TGTTTGCAGA
Statistics
Matches: 142, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
85 70 0.49
86 72 0.51
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (85 bp):
AATTACTGCCACTTGTTGTGAGTGCACAACATATTTGCAGATTAAACAAACTGCCACTTGGTTCA
TAATCGAACCACATATTTGC
Found at i:47936230 original size:29 final size:29
Alignment explanation
Indices: 47936053--47936384 Score: 226
Period size: 28 Copynumber: 11.8 Consensus size: 29
47936043 AGTAAAATCT
* *
47936053 TAAAACTTG-AAAATCAGGGGA-AAAACTA
1 TAAAATTTGAAAAAT-AGGGGACAAAACTG
*
47936081 TAAAATCTT-AAAAATA-TGGA-AAAA-TG
1 TAAAAT-TTGAAAAATAGGGGACAAAACTG
* * * *
47936107 TAAAATCTAAAAAATA-AGGACAAAACTA
1 TAAAATTTGAAAAATAGGGGACAAAACTG
* * *
47936135 TAAAATTTAAAAAATATGGG-CAAAACTA
1 TAAAATTTGAAAAATAGGGGACAAAACTG
* * * *
47936163 TAAAATCTAAAAAATAGAGG-C-AAACTA
1 TAAAATTTGAAAAATAGGGGACAAAACTG
* * *
47936190 TAATATCTGAAAAATAGGGGACAAAATTG
1 TAAAATTTGAAAAATAGGGGACAAAACTG
* * ** *
47936219 TAAAATATGAAAAACAAAGG-CTAAACTG
1 TAAAATTTGAAAAATAGGGGACAAAACTG
* *
47936247 TAAGATTTGGGAAAATAGGGGACAAAA-TG
1 TAAAATTT-GAAAAATAGGGGACAAAACTG
* * * *
47936276 TAAATTTTGAAGCAATAAGGG-CAAAAAT-
1 TAAAATTTGAA-AAATAGGGGACAAAACTG
* *
47936304 TAAAAATTTGAAAAATAGGGGATAAAACTA
1 T-AAAATTTGAAAAATAGGGGACAAAACTG
*
47936334 TAAAATTTGAAAAATAGGGG-CAAAACTA
1 TAAAATTTGAAAAATAGGGGACAAAACTG
*
47936362 TAAAATTTGGAAAATAGGGGACA
1 TAAAATTTGAAAAATAGGGGACA
47936385 CACGGTCGTG
Statistics
Matches: 246, Mismatches: 42, Indels: 31
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.00
26 17 0.07
27 34 0.14
28 102 0.41
29 87 0.35
30 5 0.02
ACGTcount: A:0.54, C:0.07, G:0.17, T:0.22
Consensus pattern (29 bp):
TAAAATTTGAAAAATAGGGGACAAAACTG
Found at i:47936355 original size:57 final size:54
Alignment explanation
Indices: 47936053--47936382 Score: 138
Period size: 57 Copynumber: 5.9 Consensus size: 54
47936043 AGTAAAATCT
* * * *
47936053 TAAAACTTG-AAAATCAGGGGA-AAAACTATAAAATCTT-AAAAATA-TGGAAAAATG
1 TAAAATTTGAAAAAT-AGGGGACAAAA-T-TAAAAT-TTGAAAAATAGGGGAAAACTA
* * * * *
47936107 TAAAATCTAAAAAATA-AGGACAAAACTATAAAATTTAAAAAATATGGGCAAAACTA
1 TAAAATTTGAAAAATAGGGGACAAAA-T-TAAAATTTGAAAAATA-GGGGAAAACTA
* * * * * * * *
47936163 TAAAATCTAAAAAATAGAGG-CAAACTATAATATCTGAAAAATAGGGGACAAAATTG
1 TAAAATTTGAAAAATAGGGGACAAAAT-TAAAATTTGAAAAATAGGGG--AAAACTA
* * ** * * * * *
47936219 TAAAATATGAAAAACAAAGG-CTAAACTGTAAGATTTGGGAAAATAGGGGACAAAATG
1 TAAAATTTGAAAAATAGGGGAC-AAAAT-TAAAATTT-GAAAAATAGGGGA-AAACTA
* * *
47936276 TAAATTTTGAAGCAATAAGGG-CAAAAATTAAAAATTTGAAAAATAGGGGATAAAACTA
1 TAAAATTTGAA-AAATAGGGGAC-AAAATT-AAAATTTGAAAAATAGGGG--AAAACTA
*
47936334 TAAAATTTGAAAAATAGGGG-CAAAACTATAAAATTTGGAAAATAGGGGA
1 TAAAATTTGAAAAATAGGGGACAAAA-T-TAAAATTTGAAAAATAGGGGA
47936383 CACACGGTCG
Statistics
Matches: 220, Mismatches: 39, Indels: 33
0.75 0.13 0.11
Matches are distributed among these distances:
53 5 0.02
54 30 0.14
55 21 0.10
56 53 0.24
57 67 0.30
58 43 0.20
59 1 0.00
ACGTcount: A:0.54, C:0.07, G:0.17, T:0.22
Consensus pattern (54 bp):
TAAAATTTGAAAAATAGGGGACAAAATTAAAATTTGAAAAATAGGGGAAAACTA
Found at i:47936918 original size:24 final size:24
Alignment explanation
Indices: 47936886--47936933 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
47936876 TGAAAAGATA
47936886 GAACGTAGCGTGTAGAAGTCCTAC
1 GAACGTAGCGTGTAGAAGTCCTAC
47936910 GAACGTAGCGTGTAGAAGTCCTAC
1 GAACGTAGCGTGTAGAAGTCCTAC
47936934 AAAGCCTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (24 bp):
GAACGTAGCGTGTAGAAGTCCTAC
Found at i:47937092 original size:24 final size:25
Alignment explanation
Indices: 47937065--47937122 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
47937055 AAACTCTTCT
*
47937065 AAAAGAAACTGAAGAGAAATTCTTA
1 AAAAGAAACTCAAGAGAAATTCTTA
*
47937090 AAAAAAAACTCAAGAGAAATTCTTA
1 AAAAGAAACTCAAGAGAAATTCTTA
47937115 AAAAGAAA
1 AAAAGAAA
47937123 AACCCAGAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.62, C:0.09, G:0.12, T:0.17
Consensus pattern (25 bp):
AAAAGAAACTCAAGAGAAATTCTTA
Found at i:47937133 original size:28 final size:25
Alignment explanation
Indices: 47937076--47937135 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 25
47937066 AAAGAAACTG
*
47937076 AAGAGAAATTCTTAAAAAAAAACTC
1 AAGAGAAATTCTTAAAAAAAAACCC
47937101 AAGAGAAATTCTTAAAAAGAAAAACCC
1 AAGAGAAATTCTT-AAAA-AAAAACCC
47937128 AGAGAGAA
1 A-AGAGAA
47937136 TTTATTAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
25 13 0.42
26 4 0.13
27 8 0.26
28 6 0.19
ACGTcount: A:0.60, C:0.12, G:0.13, T:0.15
Consensus pattern (25 bp):
AAGAGAAATTCTTAAAAAAAAACCC
Found at i:47937137 original size:27 final size:25
Alignment explanation
Indices: 47937077--47937137 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 25
47937067 AAGAAACTGA
*
47937077 AGAGA-AATTCTTAAAAAAAAACTC
1 AGAGAGAATTCTTAAAAAAAAACCC
47937101 A-AGAGAAATTCTTAAAAAGAAAAACCC
1 AGAGAG-AATTCTT-AAAA-AAAAACCC
47937128 AGAGAGAATT
1 AGAGAGAATT
47937138 TATTAACTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
23 3 0.10
24 1 0.03
25 7 0.23
26 4 0.13
27 12 0.39
28 4 0.13
ACGTcount: A:0.57, C:0.11, G:0.13, T:0.18
Consensus pattern (25 bp):
AGAGAGAATTCTTAAAAAAAAACCC
Found at i:47937143 original size:28 final size:26
Alignment explanation
Indices: 47937076--47937143 Score: 75
Period size: 25 Copynumber: 2.6 Consensus size: 26
47937066 AAAGAAACTG
* *
47937076 AAGAGAAATTCTT-AAAAAAAAACTC
1 AAGAGAAATTATTAAAAAAAAAACCC
*
47937101 AAGAGAAATTCTTAAAAAGAAAAACCC
1 AAGAGAAATTATTAAAAA-AAAAACCC
*
47937128 AGAGAGAATTTATTAA
1 A-AGAGAAATTATTAA
47937144 CTCAAAAGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
25 13 0.35
26 4 0.11
27 8 0.22
28 12 0.32
ACGTcount: A:0.57, C:0.10, G:0.12, T:0.21
Consensus pattern (26 bp):
AAGAGAAATTATTAAAAAAAAAACCC
Found at i:47938035 original size:27 final size:27
Alignment explanation
Indices: 47937997--47938072 Score: 143
Period size: 27 Copynumber: 2.8 Consensus size: 27
47937987 AATACTTACC
47937997 TAAGCTTTCTTGTGCGCCAAAACTGTA
1 TAAGCTTTCTTGTGCGCCAAAACTGTA
47938024 TAAGCTTTCTTGTGCGCCAAAACTGTA
1 TAAGCTTTCTTGTGCGCCAAAACTGTA
*
47938051 TAAGCTTTCTTGTGCACCAAAA
1 TAAGCTTTCTTGTGCGCCAAAA
47938073 TTATCTCCAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (27 bp):
TAAGCTTTCTTGTGCGCCAAAACTGTA
Found at i:47938750 original size:17 final size:17
Alignment explanation
Indices: 47938728--47938760 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
47938718 TTCCAAAATA
47938728 AAGTTTCTTTATATACC
1 AAGTTTCTTTATATACC
47938745 AAGTTTCTTTATATAC
1 AAGTTTCTTTATATAC
47938761 ATGCCATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.15, G:0.06, T:0.48
Consensus pattern (17 bp):
AAGTTTCTTTATATACC
Found at i:47942268 original size:19 final size:18
Alignment explanation
Indices: 47942241--47942279 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
47942231 ATCTGTATAC
*
47942241 AATTTTTTAATATATTTT
1 AATTTTTTAATATAATTT
*
47942259 AATTTATTTATTATAATTT
1 AATTT-TTTAATATAATTT
47942278 AA
1 AA
47942280 AATAAACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
AATTTTTTAATATAATTT
Found at i:47943286 original size:23 final size:22
Alignment explanation
Indices: 47943255--47943315 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 22
47943245 CCCGGCCCGC
* *
47943255 TTTTAATTAAAATTAAAATTATA
1 TTTTTATTAAAATTAAAACTA-A
47943278 TTTTTATTAAAATTAAAACTAA
1 TTTTTATTAAAATTAAAACTAA
* *
47943300 TTGTTATCAAAATTAA
1 TTTTTATTAAAATTAA
47943316 TTGTTATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 15 0.44
23 19 0.56
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (22 bp):
TTTTTATTAAAATTAAAACTAA
Found at i:47943311 original size:22 final size:23
Alignment explanation
Indices: 47943263--47943315 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
47943253 GCTTTTAATT
* * *
47943263 AAAATTAAAATTATATTTTTATT
1 AAAATTAAAACTATATTGTTATC
47943286 AAAATTAAAACTA-ATTGTTATC
1 AAAATTAAAACTATATTGTTATC
47943308 AAAATTAA
1 AAAATTAA
47943316 TTGTTATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (23 bp):
AAAATTAAAACTATATTGTTATC
Found at i:47943316 original size:16 final size:16
Alignment explanation
Indices: 47943292--47943329 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
47943282 TATTAAAATT
*
47943292 AAAACTAATTGTTATC
1 AAAATTAATTGTTATC
*
47943308 AAAATTAATTGTTATT
1 AAAATTAATTGTTATC
47943324 AAAATT
1 AAAATT
47943330 GTATCAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (16 bp):
AAAATTAATTGTTATC
Found at i:47943459 original size:44 final size:44
Alignment explanation
Indices: 47943410--47943556 Score: 143
Period size: 44 Copynumber: 3.2 Consensus size: 44
47943400 TTGTTAATTG
47943410 TATTAATTGTTACTAAAATTATTAGATTATATCAAATTATTAAT
1 TATTAATTGTTACTAAAATTATTAGATTATATCAAATTATTAAT
* * ** * *
47943454 TATTAATTGTTACTAACATTTTGTTAGTAAAATTAT-TAATTGTTAATT
1 TATTAATTGTTACTAA-A-ATTATTAG-ATTA-TATCAAATTATTAA-T
* * *
47943502 GTATTAATTGTTAGTAAAATTATCAAATTATATCAAATTATTAAT
1 -TATTAATTGTTACTAAAATTATTAGATTATATCAAATTATTAAT
*
47943547 TTTTAATTGT
1 TATTAATTGT
47943557 ATAAATTGTT
Statistics
Matches: 80, Mismatches: 16, Indels: 14
0.73 0.15 0.13
Matches are distributed among these distances:
44 25 0.31
45 5 0.06
46 16 0.20
47 14 0.17
48 5 0.06
49 15 0.19
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.50
Consensus pattern (44 bp):
TATTAATTGTTACTAAAATTATTAGATTATATCAAATTATTAAT
Found at i:47943498 original size:19 final size:19
Alignment explanation
Indices: 47943474--47943524 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 19
47943464 TACTAACATT
47943474 TTGTTAGTAAAATTATTAA
1 TTGTTAGTAAAATTATTAA
*
47943493 TTG-T--T-AATTGTATTAA
1 TTGTTAGTAAAAT-TATTAA
47943509 TTGTTAGTAAAATTAT
1 TTGTTAGTAAAATTAT
47943525 CAAATTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
15 3 0.12
16 10 0.40
17 1 0.04
18 1 0.04
19 7 0.28
20 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (19 bp):
TTGTTAGTAAAATTATTAA
Found at i:47943508 original size:93 final size:92
Alignment explanation
Indices: 47943374--47943556 Score: 321
Period size: 93 Copynumber: 2.0 Consensus size: 92
47943364 TTTGTAAAAT
* *
47943374 CTAACATTTTGTTAGTAAATTATTAATTGTTAATTGTATTAATTGTTACTAAAATTATTAGATTA
1 CTAACATTTTGTTAGTAAATTATTAATTGTTAATTGTATTAATTGTTACTAAAATTATCAAATTA
47943439 TATCAAATTATTAATTATTAATTGTTA
66 TATCAAATTATTAATTATTAATTGTTA
*
47943466 CTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTGTTAGTAAAATTATCAAATT
1 CTAACATTTTGTTAGT-AAATTATTAATTGTTAATTGTATTAATTGTTACTAAAATTATCAAATT
*
47943531 ATATCAAATTATTAATTTTTAATTGT
65 ATATCAAATTATTAATTATTAATTGT
47943557 ATAAATTGTT
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 16 0.19
93 70 0.81
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (92 bp):
CTAACATTTTGTTAGTAAATTATTAATTGTTAATTGTATTAATTGTTACTAAAATTATCAAATTA
TATCAAATTATTAATTATTAATTGTTA
Found at i:47943613 original size:10 final size:10
Alignment explanation
Indices: 47943598--47943623 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
47943588 TTAGTAAAAT
47943598 TATCAAATTA
1 TATCAAATTA
47943608 TATCAAATTA
1 TATCAAATTA
47943618 TATCAA
1 TATCAA
47943624 GTTTAACTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (10 bp):
TATCAAATTA
Found at i:47950718 original size:42 final size:40
Alignment explanation
Indices: 47950647--47950789 Score: 130
Period size: 42 Copynumber: 3.4 Consensus size: 40
47950637 TTAGCTCACA
* *
47950647 CGAGCTTCTATTCAA-CTTATATGAGTTTTCGCTTAGCTCTAT
1 CGAGCTTCTGTTCAACCCT-TATG-GTTTTCG-TTAGCTCTAT
*
47950689 CGAGCTTCTGTTTAACCCTTATGGTTTTTCGTTCAGCTCT-T
1 CGAGCTTCTGTTCAACCCTTATGG-TTTTCGTT-AGCTCTAT
* * *
47950730 ACGAGCTCCCGTTCAACCCTTATGGGTTTCTGTTTAGCTCTCAT
1 -CGAGCTTCTGTTCAACCCTTATGGTTTTC-G-TTAGCTCT-AT
47950774 -GAGCTTCTGTTCAACC
1 CGAGCTTCTGTTCAACC
47950790 TTCGGGCTTC
Statistics
Matches: 84, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
41 8 0.10
42 71 0.85
43 4 0.05
44 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.41
Consensus pattern (40 bp):
CGAGCTTCTGTTCAACCCTTATGGTTTTCGTTAGCTCTAT
Found at i:47951714 original size:13 final size:13
Alignment explanation
Indices: 47951696--47951727 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
47951686 AGCACACGGA
*
47951696 CGTGTGGCTTGTC
1 CGTGTGGCTTGGC
47951709 CGTGTGGCTTGGC
1 CGTGTGGCTTGGC
47951722 CGTGTG
1 CGTGTG
47951728 ACTCCTGCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.00, C:0.22, G:0.44, T:0.34
Consensus pattern (13 bp):
CGTGTGGCTTGGC
Found at i:47957854 original size:9 final size:9
Alignment explanation
Indices: 47957840--47957868 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
47957830 AGGGACTAGA
47957840 TTGTAAAAG
1 TTGTAAAAG
47957849 TTGTAAAAG
1 TTGTAAAAG
47957858 TTGTAAAAG
1 TTGTAAAAG
47957867 TT
1 TT
47957869 TAGGATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (9 bp):
TTGTAAAAG
Found at i:47958353 original size:42 final size:42
Alignment explanation
Indices: 47958288--47958447 Score: 164
Period size: 42 Copynumber: 3.8 Consensus size: 42
47958278 TCGTGTTTAC
* * * * *
47958288 TTTCTGTTTAGCTC-ACACGAGCTTCTGTTTAACTCATATGAG
1 TTTCCGTTTAGCTCTA-TCGAGCTTCTGTTTAACCCTTATGGG
*
47958330 TTTCCATTTAGCTCTATCGAGCTTCTGTTTAACCCTTATGGG
1 TTTCCGTTTAGCTCTATCGAGCTTCTGTTTAACCCTTATGGG
* ** *
47958372 TTTCCGTTCAGCTCT-TACGAGCTTCCATTCAACCCTTATGGG
1 TTTCCGTTTAGCTCTAT-CGAGCTTCTGTTTAACCCTTATGGG
* *
47958414 TTTCTGTTTAGCTCTCAT-GAGCTTCTGTTCAACC
1 TTTCCGTTTAGCTCT-ATCGAGCTTCTGTTTAACC
47958448 TTCGGGCTTC
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
42 96 0.97
43 1 0.01
44 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.16, T:0.41
Consensus pattern (42 bp):
TTTCCGTTTAGCTCTATCGAGCTTCTGTTTAACCCTTATGGG
Found at i:47958441 original size:21 final size:21
Alignment explanation
Indices: 47958289--47958442 Score: 85
Period size: 21 Copynumber: 7.3 Consensus size: 21
47958279 CGTGTTTACT
** *
47958289 TTCTGTTTAGCTCACACGAGC
1 TTCTGTTTAGCTCTTATGAGC
* * *
47958310 TTCTGTTTAACTCATATGAGT
1 TTCTGTTTAGCTCTTATGAGC
**
47958331 TTCCATTTAGCTC-TATCGAGC
1 TTCTGTTTAGCTCTTAT-GAGC
* * * *
47958352 TTCTGTTTAACCCTTATGGGT
1 TTCTGTTTAGCTCTTATGAGC
* * *
47958373 TTCCGTTCAGCTCTTACGAGC
1 TTCTGTTTAGCTCTTATGAGC
** * * * * *
47958394 TTCCATTCAACCCTTATGGGT
1 TTCTGTTTAGCTCTTATGAGC
*
47958415 TTCTGTTTAGCTCTCATGAGC
1 TTCTGTTTAGCTCTTATGAGC
47958436 TTCTGTT
1 TTCTGTT
47958443 CAACCTTCGG
Statistics
Matches: 96, Mismatches: 35, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
20 3 0.03
21 90 0.94
22 3 0.03
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.42
Consensus pattern (21 bp):
TTCTGTTTAGCTCTTATGAGC
Found at i:47960190 original size:25 final size:25
Alignment explanation
Indices: 47960117--47960190 Score: 82
Period size: 24 Copynumber: 3.0 Consensus size: 25
47960107 GTGTTTTCTA
*
47960117 ATTAAATGCTCTTCGGAGCTTCCC-
1 ATTAAGTGCTCTTCGGAGCTTCCCG
*
47960141 ATTAAGTGCTCTTCGGAGCTACCCG
1 ATTAAGTGCTCTTCGGAGCTTCCCG
*
47960166 A-TATAG-GCTCTTTGTGAGCTTCCCG
1 ATTA-AGTGCTCTTCG-GAGCTTCCCG
47960191 TTATTAAGCT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
24 31 0.72
25 12 0.28
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.32
Consensus pattern (25 bp):
ATTAAGTGCTCTTCGGAGCTTCCCG
Found at i:47960523 original size:18 final size:18
Alignment explanation
Indices: 47960500--47960536 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
47960490 GAAATTAATA
47960500 ACTAACATATTTGATGAG
1 ACTAACATATTTGATGAG
47960518 ACTAACATATTTGATGAG
1 ACTAACATATTTGATGAG
47960536 A
1 A
47960537 TTGTGTGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (18 bp):
ACTAACATATTTGATGAG
Found at i:47973137 original size:14 final size:14
Alignment explanation
Indices: 47973095--47973130 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
47973085 GTTAAAAATA
*
47973095 TATTGTTAAATTAG
1 TATTATTAAATTAG
*
47973109 TATTATTAAATTAT
1 TATTATTAAATTAG
47973123 TATTATTA
1 TATTATTA
47973131 TTATATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (14 bp):
TATTATTAAATTAG
Found at i:47973262 original size:3 final size:3
Alignment explanation
Indices: 47973246--47973293 Score: 78
Period size: 3 Copynumber: 15.7 Consensus size: 3
47973236 AAGTAAATAA
*
47973246 TAT TAT AAT ATAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
47973292 TA
1 TA
47973294 ACTAATGCAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 40 0.95
4 2 0.05
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:47973340 original size:17 final size:18
Alignment explanation
Indices: 47973318--47973353 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
47973308 GGAATAAAAT
*
47973318 AAAAGAATAAA-AGAAAC
1 AAAAGAAGAAATAGAAAC
47973335 AAAAGAAGAAATAGAAAC
1 AAAAGAAGAAATAGAAAC
47973353 A
1 A
47973354 GAATTGCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.75, C:0.06, G:0.14, T:0.06
Consensus pattern (18 bp):
AAAAGAAGAAATAGAAAC
Found at i:47992659 original size:126 final size:126
Alignment explanation
Indices: 47992334--47992854 Score: 749
Period size: 126 Copynumber: 4.1 Consensus size: 126
47992324 GGCCAAACAT
*
47992334 GAACTACTGTAGAAAAAGAGCGTCGACGTGGGAGCTTTTTTTCA-TCAATTTTGCTGACAGTGCA
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTTCAGT-AATTTTGCTGACAGTGCA
** * * * *
47992398 TCCTGCTTGAAGTGTTTTTGACACTATTTGTTCAGAGCCGTCTTCTTAAAATTATTTTTGCAA
64 TCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
* * * *
47992461 GAACTACTGTA-AAAAAGAGTGTCCACGTGGGAGTTTTTTTCAATAATTTTGCTGACAGTGCATT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * * *
47992525 CTGCTTGAAGCATTTTTGACACTGTTTGTTCAGAATCATCTTCTCAAACTTATTTTTTCAG
66 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
* *
47992586 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGATCTTTTTTTAGTAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * *
47992651 CTGATTGAAGCATTTTTGACACTATTTGTTCATAAACGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
* * *
47992712 AAACTAATGTAGAAAAAGAGAGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* ** * *
47992777 TTGCTTGAAGTGTTTTTGACACTATTTGTTCAGAACCGTATTCTCAAATTTATTTTTTCAG
66 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
*
47992838 GAACTACTGTGGAAAAA
1 GAACTACTGTAGAAAAA
47992855 AAAATAAAAT
Statistics
Matches: 350, Mismatches: 42, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
125 89 0.25
126 250 0.71
127 11 0.03
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
Found at i:47992958 original size:34 final size:33
Alignment explanation
Indices: 47992915--47993027 Score: 140
Period size: 34 Copynumber: 3.4 Consensus size: 33
47992905 ACACAATATT
*
47992915 ATTTTTTAAAAAAACTAAACCCTAATTTAAGTA
1 ATTTTTTAAAAAAACTAAACCCTAATTTAATTA
* *
47992948 ATTTTCTTAAAAACACTAAACACTAATTTAATTA
1 ATTTT-TTAAAAAAACTAAACCCTAATTTAATTA
**
47992982 ATTTATTT-AAAACTCTTAAACCCTAATTTAATTA
1 ATTT-TTTAAAAAAAC-TAAACCCTAATTTAATTA
47993016 A-TTTTTAAAAAA
1 ATTTTTTAAAAAA
47993028 GAACACTAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
32 3 0.04
33 17 0.24
34 49 0.70
35 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.40
Consensus pattern (33 bp):
ATTTTTTAAAAAAACTAAACCCTAATTTAATTA
Found at i:48007433 original size:29 final size:31
Alignment explanation
Indices: 48007385--48007457 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 31
48007375 GACAAAAAAA
* * *
48007385 TTAAAATATTTTTAAACAAAAATATTATAA-T
1 TTAAAATAATTAT-AACAAAAATATTAAAATT
* *
48007416 TTAAAA-AATTATAACAAATATTTTAAAATT
1 TTAAAATAATTATAACAAAAATATTAAAATT
48007446 TTAAAATAATTA
1 TTAAAATAATTA
48007458 ATTGCAAATG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 13 0.37
30 11 0.31
31 11 0.31
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (31 bp):
TTAAAATAATTATAACAAAAATATTAAAATT
Found at i:48008150 original size:17 final size:17
Alignment explanation
Indices: 48008128--48008165 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
48008118 AGTTATGTTA
*
48008128 TATGAAAGGTCAAGGGT
1 TATGAAAGGTCAAGAGT
48008145 TATGAAAGGTCAAGAGT
1 TATGAAAGGTCAAGAGT
48008162 TATG
1 TATG
48008166 TTGTTTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.32, T:0.26
Consensus pattern (17 bp):
TATGAAAGGTCAAGAGT
Found at i:48008351 original size:17 final size:17
Alignment explanation
Indices: 48008319--48008357 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
48008309 TAAGCTTTTG
48008319 ATTTTATAAGTGAGAAC
1 ATTTTATAAGTGAGAAC
*
48008336 AATTTTAT-ATTGAGAAC
1 -ATTTTATAAGTGAGAAC
48008353 ATTTT
1 ATTTT
48008358 TCTACAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 8 0.40
18 7 0.35
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATAAGTGAGAAC
Found at i:48012511 original size:17 final size:17
Alignment explanation
Indices: 48012489--48012526 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
48012479 AGTTATGTTA
*
48012489 TATGAAAGGTCAAGGGT
1 TATGAAAGGTCAAGAGT
48012506 TATGAAAGGTCAAGAGT
1 TATGAAAGGTCAAGAGT
48012523 TATG
1 TATG
48012527 TTGTTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.32, T:0.26
Consensus pattern (17 bp):
TATGAAAGGTCAAGAGT
Found at i:48012714 original size:17 final size:17
Alignment explanation
Indices: 48012682--48012720 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
48012672 TAAGCTTTTG
48012682 ATTTTATAAGTGAGAAC
1 ATTTTATAAGTGAGAAC
*
48012699 AATTTTAT-ATTGAGAAC
1 -ATTTTATAAGTGAGAAC
48012716 ATTTT
1 ATTTT
48012721 TCTACAGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 8 0.40
18 7 0.35
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATAAGTGAGAAC
Found at i:48014050 original size:16 final size:16
Alignment explanation
Indices: 48014020--48014060 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 16
48014010 TAACCCTCAA
48014020 ATTTTATAAAAAAAATTT
1 ATTTTAT-AAAAAAA-TT
48014038 ATTTTATAAAAAAATT
1 ATTTTATAAAAAAATT
48014054 ATTTTAT
1 ATTTTAT
48014061 TCCTTCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 9 0.39
17 7 0.30
18 7 0.30
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTTTATAAAAAAATT
Found at i:48018466 original size:16 final size:16
Alignment explanation
Indices: 48018436--48018476 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 16
48018426 TAACCCTCGA
48018436 ATTTTATAAAAAAAATTT
1 ATTTTAT-AAAAAAA-TT
48018454 ATTTTATAAAAAAATT
1 ATTTTATAAAAAAATT
48018470 ATTTTAT
1 ATTTTAT
48018477 TCCTTCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 9 0.39
17 7 0.30
18 7 0.30
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTTTATAAAAAAATT
Found at i:48021966 original size:5 final size:5
Alignment explanation
Indices: 48021956--48022005 Score: 91
Period size: 5 Copynumber: 10.0 Consensus size: 5
48021946 GTGGATAATA
*
48021956 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT CATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
48022006 ACGATAAATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:48023621 original size:18 final size:18
Alignment explanation
Indices: 48023598--48023636 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
48023588 GAATGGCCCT
*
48023598 GGTGGCAGTGTTGGTGGC
1 GGTGGCAGTGTGGGTGGC
48023616 GGTGGCAGTGTGGGTGGC
1 GGTGGCAGTGTGGGTGGC
48023634 GGT
1 GGT
48023637 ACTATGGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.05, C:0.10, G:0.59, T:0.26
Consensus pattern (18 bp):
GGTGGCAGTGTGGGTGGC
Found at i:48024915 original size:24 final size:24
Alignment explanation
Indices: 48024888--48024934 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
48024878 CTCTAGAGAT
* * *
48024888 CGTGACCGTGATCGTGATAGGGAA
1 CGTGACCGAGATAGGGATAGGGAA
*
48024912 CGTGATCGAGATAGGGATAGGGA
1 CGTGACCGAGATAGGGATAGGGA
48024935 TCGATATAGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.13, G:0.40, T:0.19
Consensus pattern (24 bp):
CGTGACCGAGATAGGGATAGGGAA
Found at i:48024917 original size:18 final size:18
Alignment explanation
Indices: 48024894--48024947 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 18
48024884 AGATCGTGAC
*
48024894 CGTGATCGTGATAGGGAA
1 CGTGATCGAGATAGGGAA
48024912 CGTGATCGAGATAGGGATA
1 CGTGATCGAGATAGGGA-A
* *
48024931 -GGGATCGATATAGGGAA
1 CGTGATCGAGATAGGGAA
48024948 GACAGAGACA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 1 0.03
18 30 0.94
19 1 0.03
ACGTcount: A:0.31, C:0.09, G:0.39, T:0.20
Consensus pattern (18 bp):
CGTGATCGAGATAGGGAA
Found at i:48031941 original size:25 final size:26
Alignment explanation
Indices: 48031896--48031946 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
48031886 TTTAAACATC
*
48031896 CATATATTAAAAAAAATATTA-ATTT
1 CATACATTAAAAAAAATATTAGATTT
*
48031921 CATACATTAATAAATAA-ATTAGATTT
1 CATACATTAA-AAAAAATATTAGATTT
48031947 TTTTCCTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (26 bp):
CATACATTAAAAAAAATATTAGATTT
Found at i:48045936 original size:33 final size:33
Alignment explanation
Indices: 48045884--48046025 Score: 203
Period size: 33 Copynumber: 4.3 Consensus size: 33
48045874 ACCTGGAGGA
* * * *
48045884 GGTGGAGGAGCCCCCCGCATAGGAGGTGGGGGC
1 GGTGCAGGTGCCCCACGCATAGGAGGGGGGGGC
48045917 GGTGCAGGTGCCCCACGCATAGGAGGGGGGGGC
1 GGTGCAGGTGCCCCACGCATAGGAGGGGGGGGC
*
48045950 GGTGCAGGTGCTCCACGCATAGGAGGGGGGGGC
1 GGTGCAGGTGCCCCACGCATAGGAGGGGGGGGC
* * *
48045983 GGTGCAGGTGCTCCACGCATAGGAGGTGGGGGT
1 GGTGCAGGTGCCCCACGCATAGGAGGGGGGGGC
*
48046016 GGTGCTGGTG
1 GGTGCAGGTG
48046026 NNNNNNNNNN
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 101 1.00
ACGTcount: A:0.14, C:0.21, G:0.51, T:0.13
Consensus pattern (33 bp):
GGTGCAGGTGCCCCACGCATAGGAGGGGGGGGC
Found at i:48046158 original size:3 final size:3
Alignment explanation
Indices: 48046152--48046183 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
48046142 AGGAGGAGGA
*
48046152 GGT GGT GGT GGT GGT GGT GGT GGT GGA GGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
48046184 AAGTGGAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.00, G:0.69, T:0.28
Consensus pattern (3 bp):
GGT
Found at i:48060854 original size:57 final size:59
Alignment explanation
Indices: 48060751--48060861 Score: 165
Period size: 57 Copynumber: 1.9 Consensus size: 59
48060741 AATAAGATTA
* *
48060751 TTAATATAAATAATAAATAATTTAATCATATTTTAATATAATTATTAT-TAAATGTAAT
1 TTAATATAAATAATAAATAATTTAATAAAATTTTAATATAATTATTATATAAATGTAAT
*
48060809 TTAATA-AAA-AATATATAATTTAATAAAATTCTTAATATAATTATTATATAAAT
1 TTAATATAAATAATAAATAATTTAATAAAATT-TTAATATAATTATTATATAAAT
48060862 TTACTAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
56 18 0.38
57 19 0.40
58 11 0.23
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (59 bp):
TTAATATAAATAATAAATAATTTAATAAAATTTTAATATAATTATTATATAAATGTAAT
Found at i:48060879 original size:57 final size:56
Alignment explanation
Indices: 48060756--48060884 Score: 152
Period size: 57 Copynumber: 2.3 Consensus size: 56
48060746 GATTATTAAT
* * * **
48060756 ATAAATAATAAATAATTTAATCATATTTTAATATAATTATTATTAAATGTAATTTA
1 ATAAATAATATATAATTTAATAAAATTTTAATATAATTATTATTAAATGTAATAAA
* * *
48060812 ATAAAAAATATATAATTTAATAAAATTCTTAATATAATTATTATATAAATTTACTAAA
1 ATAAATAATATATAATTTAATAAAATT-TTAATATAATTATTAT-TAAATGTAATAAA
*
48060870 AT-CATAATATATAAT
1 ATAAATAATATATAAT
48060885 ACTATAAAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
56 23 0.38
57 27 0.44
58 11 0.18
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (56 bp):
ATAAATAATATATAATTTAATAAAATTTTAATATAATTATTATTAAATGTAATAAA
Found at i:48062402 original size:15 final size:15
Alignment explanation
Indices: 48062382--48062417 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
48062372 ACAAACAGAC
48062382 ACAAGAACAAGAACA
1 ACAAGAACAAGAACA
*
48062397 ACAAGAACGAGAACA
1 ACAAGAACAAGAACA
48062412 A-AAGAA
1 ACAAGAA
48062418 ACAATCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.67, C:0.17, G:0.17, T:0.00
Consensus pattern (15 bp):
ACAAGAACAAGAACA
Found at i:48067256 original size:10 final size:11
Alignment explanation
Indices: 48067236--48067260 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
48067226 TGTTTTGAAA
48067236 TTTTTATTTTT
1 TTTTTATTTTT
48067247 TTTTTATTTTT
1 TTTTTATTTTT
48067258 TTT
1 TTT
48067261 AACATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTATTTTT
Found at i:48070642 original size:28 final size:28
Alignment explanation
Indices: 48070574--48070643 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
48070564 TTTAAAGATT
**
48070574 AAATGCAAGGAAAATGTATTAAGATATG
1 AAATGCAAGGAAAATACATTAAGATATG
*
48070602 AAATG-TAGAGAAAATACATTAAGATATG
1 AAATGCAAG-GAAAATACATTAAGATATG
48070630 AAATGCAAGGAAAA
1 AAATGCAAGGAAAA
48070644 AGACTATTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
27 2 0.06
28 32 0.89
29 2 0.06
ACGTcount: A:0.54, C:0.04, G:0.20, T:0.21
Consensus pattern (28 bp):
AAATGCAAGGAAAATACATTAAGATATG
Found at i:48073762 original size:2 final size:2
Alignment explanation
Indices: 48073755--48073786 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
48073745 TAACTACTTA
48073755 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
48073787 TTTGGTAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:48074531 original size:10 final size:10
Alignment explanation
Indices: 48074504--48074533 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
48074494 CTCAATTGTC
48074504 AAAAAAAA-A
1 AAAAAAAACA
48074513 AAAAAAAACA
1 AAAAAAAACA
48074523 AAAAAAAACA
1 AAAAAAAACA
48074533 A
1 A
48074534 TTCTATACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:48075533 original size:15 final size:15
Alignment explanation
Indices: 48075510--48075539 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
48075500 TATAATATTC
48075510 TCATAATAAATGCAT
1 TCATAATAAATGCAT
*
48075525 TCATGATAAATGCAT
1 TCATAATAAATGCAT
48075540 GCAATGCATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (15 bp):
TCATAATAAATGCAT
Found at i:48081527 original size:23 final size:22
Alignment explanation
Indices: 48081501--48081546 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
48081491 TTTTGAGCAA
* *
48081501 TTTAATTTTTTTCTTTTATTTTT
1 TTTAACTTTCTTCTTTT-TTTTT
*
48081524 TTTAACTTTCTTGTTTTTTTTT
1 TTTAACTTTCTTCTTTTTTTTT
48081546 T
1 T
48081547 ATTTTCCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.11, C:0.07, G:0.02, T:0.80
Consensus pattern (22 bp):
TTTAACTTTCTTCTTTTTTTTT
Found at i:48081535 original size:20 final size:20
Alignment explanation
Indices: 48081510--48081547 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
48081500 ATTTAATTTT
48081510 TTTCTT-TTATTTTTTTTAAC
1 TTTCTTGTT-TTTTTTTTAAC
48081530 TTTCTTGTTTTTTTTTTA
1 TTTCTTGTTTTTTTTTTA
48081548 TTTTCCATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.11, C:0.08, G:0.03, T:0.79
Consensus pattern (20 bp):
TTTCTTGTTTTTTTTTTAAC
Found at i:48084657 original size:9 final size:9
Alignment explanation
Indices: 48084639--48084687 Score: 80
Period size: 9 Copynumber: 5.4 Consensus size: 9
48084629 GTTGGGATTC
48084639 AATTCGGTT
1 AATTCGGTT
*
48084648 AATTCAGTT
1 AATTCGGTT
*
48084657 AATTCGGGT
1 AATTCGGTT
48084666 AATTCGGTT
1 AATTCGGTT
48084675 AATTCGGTT
1 AATTCGGTT
48084684 AATT
1 AATT
48084688 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:48087596 original size:20 final size:20
Alignment explanation
Indices: 48087571--48087609 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
48087561 AAAATATGTA
48087571 TATAAAT-TTTTGGAATTTTT
1 TATAAATGTTTT-GAATTTTT
48087591 TATAAATGTTTTGAATTTT
1 TATAAATGTTTTGAATTTT
48087610 AAAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (20 bp):
TATAAATGTTTTGAATTTTT
Found at i:48087646 original size:20 final size:20
Alignment explanation
Indices: 48087599--48087649 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
48087589 TTTATAAATG
*
48087599 TTTTGAA-TTTTAAAAATTA
1 TTTTGAATTTTTAAAAACTA
** *
48087618 TTTAAAATTTTTGAAAACTA
1 TTTTGAATTTTTAAAAACTA
48087638 TTTTGAATTTTT
1 TTTTGAATTTTT
48087650 TGTAATTTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (20 bp):
TTTTGAATTTTTAAAAACTA
Found at i:48089071 original size:41 final size:41
Alignment explanation
Indices: 48089017--48089130 Score: 165
Period size: 41 Copynumber: 2.8 Consensus size: 41
48089007 TTAATTAAAA
* * * *
48089017 CAGATTCAACGGCACATAGCCTGCTAGACTTATAGCTTGATT
1 CAGA-TCACCGGCACGTAGCCTGCTAGACTTATAACCTGATT
**
48089059 CAGATCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACGTAGCCTGCTAGACTTATAACCTGATT
48089100 CAGATCACCGGCACGTAGCCTGCTAGACTTA
1 CAGATCACCGGCACGTAGCCTGCTAGACTTA
48089131 AAGTCTGAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 60 0.94
42 4 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (41 bp):
CAGATCACCGGCACGTAGCCTGCTAGACTTATAACCTGATT
Found at i:48093890 original size:5 final size:5
Alignment explanation
Indices: 48093875--48093904 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
48093865 AGACCATTCT
48093875 TTATAA TTATA TTATA TTATA TTATA TTAT
1 TTAT-A TTATA TTATA TTATA TTATA TTAT
48093905 TAAATATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:48096671 original size:22 final size:22
Alignment explanation
Indices: 48096646--48096688 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
48096636 TATCCAAACA
*
48096646 ATAATAATAAAATAGTAGCAAT
1 ATAATAACAAAATAGTAGCAAT
* *
48096668 ATAATAACGAAATGGTAGCAA
1 ATAATAACAAAATAGTAGCAA
48096689 AACAACAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.07, G:0.14, T:0.23
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAT
Found at i:48107437 original size:3 final size:3
Alignment explanation
Indices: 48107431--48107456 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
48107421 TTCTTCTGTC
48107431 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
48107457 AGGTAAATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:48118337 original size:17 final size:20
Alignment explanation
Indices: 48118303--48118344 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
48118293 TTTTTTCTCG
*
48118303 AAAAATTATTGATGTATT-A
1 AAAAATTATAGATGTATTGA
48118322 AAAAATT-TAGAT-TATTGA
1 AAAAATTATAGATGTATTGA
48118340 AAAAA
1 AAAAA
48118345 AAAGAGGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 10 0.48
19 7 0.33
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.36
Consensus pattern (20 bp):
AAAAATTATAGATGTATTGA
Found at i:48120104 original size:10 final size:11
Alignment explanation
Indices: 48120091--48120133 Score: 51
Period size: 10 Copynumber: 4.4 Consensus size: 11
48120081 TAAATTTTGC
48120091 TAAAAATA-AT
1 TAAAAATATAT
48120101 TAAAAATATAT
1 TAAAAATATAT
48120112 T--AAAT-TAT
1 TAAAAATATAT
48120120 TAAAAA-ATAT
1 TAAAAATATAT
48120130 TAAA
1 TAAA
48120134 TTTATCAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
8 4 0.14
9 4 0.14
10 18 0.62
11 3 0.10
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAAAAATATAT
Found at i:48120143 original size:18 final size:19
Alignment explanation
Indices: 48120094--48120135 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
48120084 ATTTTGCTAA
*
48120094 AAATAATTAAAAATATATT
1 AAATTATTAAAAATATATT
48120113 AAATTATTAAAAA-ATATT
1 AAATTATTAAAAATATATT
48120131 AAATT
1 AAATT
48120136 TATCAAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATTATTAAAAATATATT
Found at i:48120143 original size:19 final size:19
Alignment explanation
Indices: 48120102--48120143 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
48120092 AAAAATAATT
*
48120102 AAAAATATATTAAATTATT
1 AAAAATATATTAAATTATC
48120121 AAAAA-ATATTAAATTTATC
1 AAAAATATATTAAA-TTATC
48120140 AAAA
1 AAAA
48120144 CTTAATAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATATATTAAATTATC
Found at i:48127255 original size:22 final size:22
Alignment explanation
Indices: 48127227--48127309 Score: 103
Period size: 22 Copynumber: 3.8 Consensus size: 22
48127217 ATTTAAAATT
**
48127227 CTCTCATGTTTAACGTACTAAG
1 CTCTCATGGCTAACGTACTAAG
** * *
48127249 CTCTCATGTTTAACGAACTAAA
1 CTCTCATGGCTAACGTACTAAG
*
48127271 CCCTCATGGCTAACGTACTAAG
1 CTCTCATGGCTAACGTACTAAG
48127293 CTCTCATGGCTAACGTA
1 CTCTCATGGCTAACGTA
48127310 AGAAAATAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 53 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (22 bp):
CTCTCATGGCTAACGTACTAAG
Found at i:48130334 original size:18 final size:19
Alignment explanation
Indices: 48130303--48130340 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
48130293 TGAATCGATT
*
48130303 TTTTTAATATATATTTTAA
1 TTTTTAATAAATATTTTAA
48130322 TTTTT-ATAAATATTTTAA
1 TTTTTAATAAATATTTTAA
48130340 T
1 T
48130341 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTTAATAAATATTTTAA
Found at i:48138058 original size:35 final size:35
Alignment explanation
Indices: 48138013--48138089 Score: 106
Period size: 35 Copynumber: 2.2 Consensus size: 35
48138003 TTATTTTTAA
48138013 TATC-AATTTTTATAAACTTGTTACAA-AAAATTTC
1 TATCAAATTTTTATAAACTTGTTA-AAGAAAATTTC
*
48138047 TATCAAATTTTTATAAATTTGTTAAAGAAAATTTC
1 TATCAAATTTTTATAAACTTGTTAAAGAAAATTTC
48138082 -ACTCAAAT
1 TA-TCAAAT
48138090 CATGAGCACG
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
34 7 0.18
35 32 0.82
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (35 bp):
TATCAAATTTTTATAAACTTGTTAAAGAAAATTTC
Found at i:48143048 original size:14 final size:14
Alignment explanation
Indices: 48143026--48143056 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
48143016 ACTCTAGAAA
48143026 TTAAAAAAAAAGTAT
1 TTAAAAAAAAA-TAT
48143041 TTAAAAAAAAATAT
1 TTAAAAAAAAATAT
48143055 TT
1 TT
48143057 TTACCTCTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
TTAAAAAAAAATAT
Found at i:48145140 original size:26 final size:27
Alignment explanation
Indices: 48145060--48145141 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 27
48145050 TATTACCAGA
* *
48145060 AATATAGGAAGTTCACAAGGACTACCT
1 AATATGGGAAGTTCACAAGGACTATCT
* *
48145087 AATATGGGAAGTCCATAAGGACTATCT
1 AATATGGGAAGTTCACAAGGACTATCT
* *
48145114 AATGTGGGAAGTTCA-GAGGACTATCT
1 AATATGGGAAGTTCACAAGGACTATCT
48145140 AA
1 AA
48145142 ATGTTAAAGT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 12 0.25
27 36 0.75
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (27 bp):
AATATGGGAAGTTCACAAGGACTATCT
Found at i:48147530 original size:19 final size:21
Alignment explanation
Indices: 48147493--48147543 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
48147483 AGGAATAAGC
* *
48147493 AAAAATTTAATTATAATA-TG
1 AAAATTTTAATCATAATATTG
48147513 AAAATTTTAATCAT-ATATTG
1 AAAATTTTAATCATAATATTG
48147533 ATAAATTTTAA
1 A-AAATTTTAA
48147544 AATATGTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 3 0.11
20 15 0.56
21 9 0.33
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (21 bp):
AAAATTTTAATCATAATATTG
Found at i:48152989 original size:46 final size:46
Alignment explanation
Indices: 48152937--48153028 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
48152927 AACGGAGTTA
48152937 ATTAAATCATCAATCGAGTTAGCGAATAAGAAATAAGCGAAACTTG
1 ATTAAATCATCAATCGAGTTAGCGAATAAGAAATAAGCGAAACTTG
48152983 ATTAAATCATCAATCGAGTTAGCGAATAAGAAATAAGCGAAACTTG
1 ATTAAATCATCAATCGAGTTAGCGAATAAGAAATAAGCGAAACTTG
48153029 TAATGTTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.24
Consensus pattern (46 bp):
ATTAAATCATCAATCGAGTTAGCGAATAAGAAATAAGCGAAACTTG
Found at i:48161167 original size:125 final size:125
Alignment explanation
Indices: 48161024--48161271 Score: 487
Period size: 125 Copynumber: 2.0 Consensus size: 125
48161014 TGTAATTGAT
48161024 TTTTTAACTTATAATAAATAATTATTATATCTAAATTATATAAATTTAACTTCAATTAAAAACTT
1 TTTTTAACTTATAATAAATAATTATTATATCTAAATTATATAAATTTAACTTCAATTAAAAACTT
48161089 TTCTCATTTTTTCTCCCAATTGTTTGTTTCTTATATTTTGTTTTGCTTAGCAGTAGCGAA
66 TTCTCATTTTTTCTCCCAATTGTTTGTTTCTTATATTTTGTTTTGCTTAGCAGTAGCGAA
48161149 TTTTTAACTTATAATAAATAATTATTATATCTAAATTATATAAATTTAACTTCAATTAAAAACTT
1 TTTTTAACTTATAATAAATAATTATTATATCTAAATTATATAAATTTAACTTCAATTAAAAACTT
*
48161214 TTCTCCTTTTTTCTCCCAATTGTTTGTTTCTTATATTTTGTTTTGCTTAGCAGTAGCG
66 TTCTCATTTTTTCTCCCAATTGTTTGTTTCTTATATTTTGTTTTGCTTAGCAGTAGCG
48161272 GTGCCAGCCC
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
125 122 1.00
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.50
Consensus pattern (125 bp):
TTTTTAACTTATAATAAATAATTATTATATCTAAATTATATAAATTTAACTTCAATTAAAAACTT
TTCTCATTTTTTCTCCCAATTGTTTGTTTCTTATATTTTGTTTTGCTTAGCAGTAGCGAA
Found at i:48168446 original size:36 final size:31
Alignment explanation
Indices: 48168355--48168443 Score: 155
Period size: 31 Copynumber: 2.9 Consensus size: 31
48168345 AAAAATGTAA
*
48168355 AATTCAT-AAAAATTAAA-AAATATTATAAC
1 AATTCATAAAAAATAAAAGAAATATTATAAC
48168384 AATTCATAAAAAATAAAAGAAATATTATAAC
1 AATTCATAAAAAATAAAAGAAATATTATAAC
48168415 AATTCATAAAAAATAAAAGAAATATTATA
1 AATTCATAAAAAATAAAAGAAATATTATA
48168444 TTAATTGCCA
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
29 7 0.12
30 9 0.16
31 41 0.72
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (31 bp):
AATTCATAAAAAATAAAAGAAATATTATAAC
Found at i:48169068 original size:23 final size:23
Alignment explanation
Indices: 48169039--48169100 Score: 92
Period size: 22 Copynumber: 2.8 Consensus size: 23
48169029 AGCCCGGCTC
48169039 ATTTTTAATTAAAATTAAAACTA
1 ATTTTTAATTAAAATTAAAACTA
*
48169062 TTTTTTAA-TAAAATTAAAACTA
1 ATTTTTAATTAAAATTAAAACTA
*
48169084 ATTGTT-ATTAAAATTAA
1 ATTTTTAATTAAAATTAA
48169101 TTGTTAGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.03
22 27 0.77
23 7 0.20
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTTTTAATTAAAATTAAAACTA
Found at i:48169113 original size:16 final size:16
Alignment explanation
Indices: 48169076--48169115 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
48169066 TTAATAAAAT
* *
48169076 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
48169092 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
48169108 TAAAATTA
1 TAAAATTA
48169116 TCAATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:48169143 original size:16 final size:15
Alignment explanation
Indices: 48169118--48169148 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
48169108 TAAAATTATC
48169118 AATTTATTAATTGTT
1 AATTTATTAATTGTT
48169133 AATTGTATTAATTGTT
1 AATT-TATTAATTGTT
48169149 GTAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (15 bp):
AATTTATTAATTGTT
Found at i:48169194 original size:59 final size:58
Alignment explanation
Indices: 48169118--48169236 Score: 202
Period size: 59 Copynumber: 2.0 Consensus size: 58
48169108 TAAAATTATC
* * *
48169118 AATTTATTAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTA
1 AATTTATAAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTA
48169176 AATTTATCAAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTA
1 AATTTAT-AAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTA
48169235 AA
1 AA
48169237 ACAAACTTGA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
58 7 0.12
59 50 0.88
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.45
Consensus pattern (58 bp):
AATTTATAAATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTA
Found at i:48169341 original size:21 final size:23
Alignment explanation
Indices: 48169303--48169344 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
48169293 AAATAAACTT
48169303 AAATAAAAAATTATTATATTTTA
1 AAATAAAAAATTATTATATTTTA
48169326 AAATAAAAAA-TA-TATATTT
1 AAATAAAAAATTATTATATTT
48169345 AATATTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 2 0.11
23 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
AAATAAAAAATTATTATATTTTA
Found at i:48170354 original size:40 final size:40
Alignment explanation
Indices: 48170296--48170375 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
48170286 ACTCAGTTGA
*
48170296 TTCATGTTTTACACGATGACATTCAGCTGATCTCGAGTTT
1 TTCATGTTTTACACGATGACATTCAGCAGATCTCGAGTTT
*
48170336 TTCATGTTTTACATGATGACATTCAGCAGATCTCGAGTTT
1 TTCATGTTTTACACGATGACATTCAGCAGATCTCGAGTTT
48170376 GAATCCCTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (40 bp):
TTCATGTTTTACACGATGACATTCAGCAGATCTCGAGTTT
Found at i:48178596 original size:20 final size:19
Alignment explanation
Indices: 48178573--48178620 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
48178563 TAAAATATCT
*
48178573 TATAATATATTAATATCTTA
1 TATAATATATTAAAAT-TTA
* *
48178593 TATAAAATTTTTAAAATTTA
1 TATAATA-TATTAAAATTTA
48178613 TATAATAT
1 TATAATAT
48178621 TAATTATTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 1 0.04
20 15 0.65
21 7 0.30
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
TATAATATATTAAAATTTA
Found at i:48178975 original size:29 final size:29
Alignment explanation
Indices: 48178911--48178975 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
48178901 GTACTTTCAT
* * * *
48178911 AAAATATCCAATGTGATATCTGTAGTTTG
1 AAAATGTCTAATGTGATATCTGTAATTTC
48178940 AAAATGTCTAATGTGATATCTG-AATTATC
1 AAAATGTCTAATGTGATATCTGTAATT-TC
*
48178969 AATATGT
1 AAAATGT
48178976 GTTTTATTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 3 0.10
29 27 0.90
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.38
Consensus pattern (29 bp):
AAAATGTCTAATGTGATATCTGTAATTTC
Found at i:48183141 original size:3 final size:3
Alignment explanation
Indices: 48183133--48183167 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
48183123 ATAAAAGAGA
48183133 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
48183168 AAAAAAACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:48189192 original size:125 final size:125
Alignment explanation
Indices: 48188966--48189212 Score: 316
Period size: 125 Copynumber: 2.0 Consensus size: 125
48188956 TAGAAATTTC
* ** * * * *
48188966 TGCTTGTAAAGTCTTCTTGGCCATAACTTGAGCTGCCGAACTCGAAATTAAGTGATTCAAAGTGC
1 TGCTTGCAAAGTCTTCACGGCCATAACTTGAGCTGCCAAACTCAAAATCAAGTGATTCAAAGCGC
* * * * *
48189031 ATTCCTAAACTAATAGATAGCTCTTTCATTAGTTTGAAGATATTTTTGCTCAAAATTTTT
66 ATTCCAAAACTAAGAGATAGCTCTTTCATTACTTTGAAGACATTTTCGCTCAAAATTTTT
* * *
48189091 TGCTTGCAAAGTCTTCACGGCCATAACTTGAGCTTCCAAACTCAAAATCAAGTGATTCAATGCGT
1 TGCTTGCAAAGTCTTCACGGCCATAACTTGAGCTGCCAAACTCAAAATCAAGTGATTCAAAGCGC
* * *
48189156 GTTTCAAAACTAAGAGATAGCTCTTTTATCT-CTTTGAAGACATTTTCGCTCAAAATT
66 ATTCCAAAACTAAGAGATAGCTCTTTCAT-TACTTTGAAGACATTTTCGCTCAAAATT
48189213 ACTTAGATCC
Statistics
Matches: 103, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
125 102 0.99
126 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (125 bp):
TGCTTGCAAAGTCTTCACGGCCATAACTTGAGCTGCCAAACTCAAAATCAAGTGATTCAAAGCGC
ATTCCAAAACTAAGAGATAGCTCTTTCATTACTTTGAAGACATTTTCGCTCAAAATTTTT
Found at i:48190753 original size:114 final size:111
Alignment explanation
Indices: 48190450--48190759 Score: 331
Period size: 114 Copynumber: 2.7 Consensus size: 111
48190440 GCGTTTTTGA
* * * * *
48190450 GAAAGCGCCGCAAAAAACCTAGCGCAACGACGCCGTTTCCCCAACATTC-GGTGATTTAGCGGCG
1 GAAAGCGCCGCAAAAAAACTAGCGCAACGACGTCGTTTCCCGAGCTTTCAGG-GATTTAGCGGCG
* *
48190514 TTTTTCAGT-AAGTGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTCTAG
65 TTTTT--GTAAAGCGCCGCTAATGCTCAAGGCTTTAGCAGCGTTTCTAG
* * *
48190562 GAAAGCGCCGCAAAAATAACTAAGCCCAACAATGTCGTTTCCCGAGCTTTCAGGGATTTAGCGGC
1 GAAAGCGCCGCAAAAA-AACT-AGCGCAACGACGTCGTTTCCCGAGCTTTCAGGGATTTAGCGGC
* * * * *
48190627 GCTTTCTATAAAGCACCGCTAATGGT-TAGGTCTTTAGCAGCGTTTCT-G
64 G-TTTTTGTAAAGCGCCGCTAATGCTCAAGG-CTTTAGCAGCGTTTCTAG
** *
48190675 GAAAAGCGCCGCTACTTAAAACTAGCGCAACGACGTCGTCTCCCGAGCTTTCAGGGATTTAGCGG
1 G-AAAGCGCCGC-A-AAAAAACTAGCGCAACGACGTCGTTTCCCGAGCTTTCAGGGATTTAGCGG
48190740 CGTTTTTGTTAAAGCGCCGC
63 CGTTTTTG-TAAAGCGCCGC
48190760 AAAAAACCTA
Statistics
Matches: 164, Mismatches: 24, Indels: 18
0.80 0.12 0.09
Matches are distributed among these distances:
112 16 0.10
113 13 0.08
114 122 0.74
115 11 0.07
116 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (111 bp):
GAAAGCGCCGCAAAAAAACTAGCGCAACGACGTCGTTTCCCGAGCTTTCAGGGATTTAGCGGCGT
TTTTGTAAAGCGCCGCTAATGCTCAAGGCTTTAGCAGCGTTTCTAG
Found at i:48190889 original size:185 final size:187
Alignment explanation
Indices: 48190545--48190945 Score: 440
Period size: 186 Copynumber: 2.1 Consensus size: 187
48190535 TGCTCAAGGC
* * * *
48190545 TTTAGCGGCGTTTCTAGGAAAGCGCCGCAAAAATAACTAAGCCCAACAATGTCGTTTCCCGAGCT
1 TTTAGCGGCGTTT-TTGAAAAGCGCCGCAAAAATAACTAAGCCCAACAACGCCGTTTCCCGAGCT
48190610 TTCAGGGATTTAGCGGCGCTTTCTATAAAGCACCGCTAATGGTTAGGTCTTTAGCAGCGTTTCTG
65 TTCAGGGATTTAGCGGCGCTTTCTATAAAGCACCGCTAATGGTTAGGTCTTTAGCAGCGTTTCTG
***
48190675 GAAAAGCGCCGCTACTTAAAACTAGCGCAACGACGTCGTCTCCCGAGC-TTTCAGGGA
130 GAAAAGCGCCGCTAAAAAAAACTAGCGCAACGACGTCGTCTCCCGAGCTTTTCAGGGA
* * * * *
48190732 TTTAGCGGCGTTTTTGTTAAAGCGCCGCAAAAA-ACCTAAGCCCAACGACGCCGTTTTCTG-GCT
1 TTTAGCGGCGTTTTTG-AAAAGCGCCGCAAAAATAACTAAGCCCAACAACGCCGTTTCCCGAGCT
* * * * *
48190795 TTCGGGGATTTTAGCGGCG-TTTTTGTTAAAGCGCCGCTAAT-GTTCA-GTCTTTAGCGGCGTTT
65 TTCAGGGA-TTTAGCGGCGCTTTCT-ATAAAGCACCGCTAATGGTT-AGGTCTTTAGCAGCG-TT
* * * * * * * * *
48190857 TTTGG-AAAGCGCCGC-AAAAAAAACTAAGCGCAATGTCGTCGTTTTCTGTGCTTTTGAGTGA
126 TCTGGAAAAGCGCCGCTAAAAAAAACT-AGCGCAACGACGTCGTCTCCCGAGCTTTTCAGGGA
48190918 TTTAGCGGCGTTTTTAGAAAAGCGCCGC
1 TTTAGCGGCGTTTTT-GAAAAGCGCCGC
48190946 TAATGATCAG
Statistics
Matches: 180, Mismatches: 26, Indels: 17
0.81 0.12 0.08
Matches are distributed among these distances:
184 7 0.04
185 58 0.32
186 86 0.48
187 29 0.16
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (187 bp):
TTTAGCGGCGTTTTTGAAAAGCGCCGCAAAAATAACTAAGCCCAACAACGCCGTTTCCCGAGCTT
TCAGGGATTTAGCGGCGCTTTCTATAAAGCACCGCTAATGGTTAGGTCTTTAGCAGCGTTTCTGG
AAAAGCGCCGCTAAAAAAAACTAGCGCAACGACGTCGTCTCCCGAGCTTTTCAGGGA
Done.