Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 176 of 190
Found at i:51202391 original size:114 final size:113
Alignment explanation
Indices: 51202251--51202597 Score: 434
Period size: 114 Copynumber: 3.0 Consensus size: 113
51202241 GCGGCATTAG
* * *
51202251 CCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTTGTGGCGTTTTTAAGTAAGCACCGCTAATGC
1 CCAACTACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGC
* * *
51202316 TCAGGGCTTTAGCAGCGTTTTTGAGAAAGCGCCACAAAAAAACCAAAGC
66 TCAGGGCTTTAGCGGCGTTTTTGAG-AAGCGCCGCAAAAAAACCTAAGC
* * *
51202365 CCAA-TGATGCCGTTTTTTGAGCTTTCGTGGATTTAGTGGCGTTTTTAAGTAAGCGCTGCTAATG
1 CCAACT-ACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATG
51202429 CTCAGGGCTTTAGCGGCGTTTTTGAGTAAGCGCCGCAACAAAAA-CTAAGC
65 CTCAGGGCTTTAGCGGCGTTTTTGAG-AAGCGCCGCAA-AAAAACCTAAGC
* * * * * *
51202479 CCAACTACACCATTTTCTGA-CAATTCGTGGGCTTTAGCGGCG-TTTTAAG-AATGCGCCGCTAA
1 CCAACTACGCCGTTTTTTGAGC-TTTCG-GGGATTTAGTGGCGTTTTTAAGTAA-GCGCCGCTAA
* *
51202541 TGCTTAGGGCTTTAGCGGCGTTTTTGTTGAAGCGCCGCAAAAAAACCTAAGC
63 TGCTCAGGGCTTTAGCGGCGTTTTTG-AGAAGCGCCGCAAAAAAACCTAAGC
51202593 CCAAC
1 CCAAC
51202598 GGCGTCGTTT
Statistics
Matches: 204, Mismatches: 21, Indels: 16
0.85 0.09 0.07
Matches are distributed among these distances:
113 8 0.04
114 178 0.87
115 18 0.09
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (113 bp):
CCAACTACGCCGTTTTTTGAGCTTTCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGC
TCAGGGCTTTAGCGGCGTTTTTGAGAAGCGCCGCAAAAAAACCTAAGC
Found at i:51202399 original size:203 final size:198
Alignment explanation
Indices: 51202053--51202446 Score: 590
Period size: 203 Copynumber: 2.0 Consensus size: 198
51202043 ATACCTAAGC
* * *
51202053 CCAACGACGCTGTTTTTCGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCTGCTCAGG
1 CCAACGACGCCGTTTTTCGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAACCGCATGCTCAGG
* *
51202118 GCTTTCGCGGAGTTTTCGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACACCGTTTTTTGAG
66 GCTTTAGCAGAGTTTTCGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACACCGTTTTTTGAG
51202183 CTTTCGGGGATTTAGTGACGTTTTTAAGTAAACGCAGCTAATGCTCAGGGCTTTAGCGGCGGCAT
131 CTTTCGGGGATTTAGTGACGTTTTTAAGTAAACGCAGCTAATGCTCAGGGCTTTAGCGGCGGCAT
51202248 TAG
196 TAG
* * *
51202251 CCAACGACGCCGTTTTTTGAGCTTTCGGGGATTTTGTGGCGTTTTTAAGTAAGCACCGCTAATGC
1 CCAACGACGCCGTTTTTCGAGCTTTCGGGGATTTAGCGGCGTTTTTAAG-AA--ACCGC--ATGC
* * * **
51202316 TCAGGGCTTTAGCAGCGTTTTTGAGAAAGCGCCACAAAAAAACCAAAGCCCAATGATGCCGTTTT
61 TCAGGGCTTTAGCAGAGTTTTCGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACACCGTTTT
* * * *
51202381 TTGAGCTTTCGTGGATTTAGTGGCGTTTTTAAGTAAGCGCTGCTAATGCTCAGGGCTTTAGCGGC
126 TTGAGCTTTCGGGGATTTAGTGACGTTTTTAAGTAAACGCAGCTAATGCTCAGGGCTTTAGCGGC
51202446 G
191 G
51202447 TTTTTGAGTA
Statistics
Matches: 174, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
198 45 0.26
199 2 0.01
201 4 0.02
203 123 0.71
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (198 bp):
CCAACGACGCCGTTTTTCGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAACCGCATGCTCAGG
GCTTTAGCAGAGTTTTCGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACACCGTTTTTTGAG
CTTTCGGGGATTTAGTGACGTTTTTAAGTAAACGCAGCTAATGCTCAGGGCTTTAGCGGCGGCAT
TAG
Found at i:51202609 original size:114 final size:115
Alignment explanation
Indices: 51202251--51202640 Score: 415
Period size: 114 Copynumber: 3.4 Consensus size: 115
51202241 GCGGCATTAG
* * * * * *
51202251 CCAACGACGCCGTTTTTTGAGC-TTTCG-GGGATTTTGTGGCGTTTTTAAGTAAGCACCGCTAAT
1 CCAACGACGCCGTTTTCTGA-CAATTCGTGGGCTTTAGCGGCGTTTTTAAGTAAGCGCCGCTAAT
* * *
51202314 GCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGCGCCACAAAAAAACCAAAGC
65 GCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGC
* * * * * * *
51202365 CCAATGATGCCGTTTTTTGAGC-TTTCGT-GGATTTAGTGGCGTTTTTAAGTAAGCGCTGCTAAT
1 CCAACGACGCCGTTTTCTGA-CAATTCGTGGGCTTTAGCGGCGTTTTTAAGTAAGCGCCGCTAAT
*
51202428 GCTCAGGGCTTTAGCGGCGTTTTTGAGTAAGCGCCGCAACAAAAA-CTAAGC
65 GCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAA-AAAAACCTAAGC
* * *
51202479 CCAACTACACCATTTTCTGACAATTCGTGGGCTTTAGCGGCG-TTTTAAG-AATGCGCCGCTAAT
1 CCAACGACGCCGTTTTCTGACAATTCGTGGGCTTTAGCGGCGTTTTTAAGTAA-GCGCCGCTAAT
* *
51202542 GCTTAGGGCTTTAGCGGCGTTTTTGTTG-AAGCGCCGCAAAAAAACCTAAGC
65 GCTCAGGGCTTTAGCGGCGTTTTTG-AGAAAGCGCCGCAAAAAAACCTAAGC
* * *
51202593 CCAACGGCGTCGTTTTCT-A-AACTT-TTAGGGCTTTAGCGGCGTTTTTAA
1 CCAACGACGCCGTTTTCTGACAA-TTCGT-GGGCTTTAGCGGCGTTTTTAA
51202641 AAAGCGTCGC
Statistics
Matches: 239, Mismatches: 27, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
112 3 0.01
113 25 0.10
114 194 0.81
115 17 0.07
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.30
Consensus pattern (115 bp):
CCAACGACGCCGTTTTCTGACAATTCGTGGGCTTTAGCGGCGTTTTTAAGTAAGCGCCGCTAATG
CTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGC
Found at i:51203007 original size:14 final size:15
Alignment explanation
Indices: 51202979--51203011 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
51202969 AACGTTCATA
51202979 GATTATGGAATTAGG
1 GATTATGGAATTAGG
51202994 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
51203008 GATT
1 GATT
51203012 CTTGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:51203257 original size:14 final size:14
Alignment explanation
Indices: 51203220--51203259 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
51203210 ATTAAATAAG
*
51203220 GTTTAGGGGGTAGTA
1 GTTT-GGGGTTAGTA
*
51203235 GTTAGGGGTTAGTA
1 GTTTGGGGTTAGTA
51203249 GTTTGGGGTTA
1 GTTTGGGGTTA
51203260 AGGGTTAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 19 0.86
15 3 0.14
ACGTcount: A:0.17, C:0.00, G:0.45, T:0.38
Consensus pattern (14 bp):
GTTTGGGGTTAGTA
Found at i:51203662 original size:21 final size:21
Alignment explanation
Indices: 51203638--51203677 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51203628 GATTTTTTGT
*
51203638 TTTGACTTTTAGGGTTTGGGA
1 TTTGACGTTTAGGGTTTGGGA
**
51203659 TTTGGGGTTTAGGGTTTGG
1 TTTGACGTTTAGGGTTTGG
51203678 TTTTGGGGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.10, C:0.03, G:0.40, T:0.47
Consensus pattern (21 bp):
TTTGACGTTTAGGGTTTGGGA
Found at i:51203666 original size:14 final size:14
Alignment explanation
Indices: 51203645--51203695 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
51203635 TGTTTTGACT
*
51203645 TTTAGGGTTTGGGA
1 TTTAGGGTTTGGGG
* *
51203659 TTTGGGGTTTAGGG
1 TTTAGGGTTTGGGG
*
51203673 TTT-GGTTTTGGGG
1 TTTAGGGTTTGGGG
*
51203686 TTTAAGGTTT
1 TTTAGGGTTT
51203696 AGAATTTATG
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
13 11 0.38
14 18 0.62
ACGTcount: A:0.10, C:0.00, G:0.41, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTGGGG
Found at i:51203684 original size:20 final size:21
Alignment explanation
Indices: 51203645--51203695 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
51203635 TGTTTTGACT
51203645 TTTAGGGTTTGGGATTTGGGG
1 TTTAGGGTTTGGGATTTGGGG
*
51203666 TTTAGGGTTT-GGTTTTGGGG
1 TTTAGGGTTTGGGATTTGGGG
*
51203686 TTTAAGGTTT
1 TTTAGGGTTT
51203696 AGAATTTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.10, C:0.00, G:0.41, T:0.49
Consensus pattern (21 bp):
TTTAGGGTTTGGGATTTGGGG
Found at i:51203891 original size:2 final size:2
Alignment explanation
Indices: 51203884--51203918 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
51203874 TATCATTTTA
51203884 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
51203919 AAAATGGGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:51204850 original size:147 final size:146
Alignment explanation
Indices: 51204652--51205045 Score: 368
Period size: 147 Copynumber: 2.7 Consensus size: 146
51204642 GAAATGTTGT
* * * *
51204652 CGTTTTGTCTATGA-TATTAGTGACG-TTATT-ATGAAAACGCCACAAGCTTGAGTTAACTGTTG
1 CGTTTTG-CTAT-ATTATTAGTGGCGTTTATTCA--AAAACGCCACAGGTTTGAGCTAACTGTTG
** * * *
51204714 GGGAAACGACTTCG-TTTGAGCTCATAGTTAGTGGCGCTTT-ACTCAAAACGCTGCAAAATTATT
62 ATGAAACGACTTCGTTTTGA-CTTATAGTTAGTGGCGCTTTGACTC-AAACGCCGCAAAAATATT
**
51204777 CTAACATTTACAGAAACGCTGC
125 CTAACATTTACAGAAACGAGGC
* * * * * *
51204799 CGTTTTG-TAAATGTTATTAGTGGCGTTTTTTCAAAAATGCCACGGGTTTGAGGTAAGTGTTGAT
1 CGTTTTGCT--ATATTATTAGTGGCGTTTATTCAAAAACGCCACAGGTTTGAGCTAACTGTTGAT
* * * * ** * *
51204863 GAAGCGACTGCGTTTTGATTTATAGTTAGTGGCGGTTTGGTTCAAACGCCGCAAAAATGTTTTAA
64 GAAACGACTTCGTTTTGACTTATAGTTAGTGGCGCTTTGACTCAAACGCCGCAAAAATATTCTAA
** * *
51204928 CATTTATTGATATGAGGC
129 CATTTACAGAAACGAGGC
* * **
51204946 CGTTTTGCTGTATTATTAGTGGCGTTTATTCAAAAACGCCACAGGTGTGAGCTATTTGTTGATGA
1 CGTTTTGCTATATTATTAGTGGCGTTTATTCAAAAACGCCACAGGTTTGAGCTAACTGTTGATGA
*
51205011 AACGGCTTCGTTTTGACTTATAGTTAGTGGCGCTT
66 AACGACTTCGTTTTGACTTATAGTTAGTGGCGCTT
51205046 ATTTATAAAC
Statistics
Matches: 197, Mismatches: 42, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
145 1 0.01
146 77 0.39
147 106 0.54
148 12 0.06
149 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.36
Consensus pattern (146 bp):
CGTTTTGCTATATTATTAGTGGCGTTTATTCAAAAACGCCACAGGTTTGAGCTAACTGTTGATGA
AACGACTTCGTTTTGACTTATAGTTAGTGGCGCTTTGACTCAAACGCCGCAAAAATATTCTAACA
TTTACAGAAACGAGGC
Found at i:51207213 original size:20 final size:19
Alignment explanation
Indices: 51207166--51207223 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 19
51207156 ATAAATAACT
*
51207166 TATTAATATATATTTT-AA
1 TATTTATATATATTTTCAA
*
51207184 -AGTTAATATATATTTTCAA
1 TA-TTTATATATATTTTCAA
51207203 TATTTAT-TATATTTTCAA
1 TATTTATATATATTTTCAA
51207221 TAT
1 TAT
51207224 ATTTTTACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
17 1 0.03
18 28 0.78
19 6 0.17
20 1 0.03
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (19 bp):
TATTTATATATATTTTCAA
Found at i:51207390 original size:13 final size:13
Alignment explanation
Indices: 51207374--51207522 Score: 110
Period size: 13 Copynumber: 11.5 Consensus size: 13
51207364 TTACTAAAAT
*
51207374 TTACTTTAATATA
1 TTACTTAAATATA
*
51207387 TTACTTGAATATA
1 TTACTTAAATATA
*
51207400 TTACTTAAATAAA
1 TTACTTAAATATA
*
51207413 TTACTTAAATACA
1 TTACTTAAATATA
*
51207426 TTACTTACTAAAAT-
1 TTACTTA--AATATA
** *
51207440 TTGGTTAAATTTA
1 TTACTTAAATATA
51207453 TTACTT-AATATTA
1 TTACTTAAATA-TA
51207466 CTTAC-TAAA-AT-
1 -TTACTTAAATATA
** *
51207477 TTGTTTAAATTTA
1 TTACTTAAATATA
*
51207490 TTACTTAAATATG
1 TTACTTAAATATA
*
51207503 TTACTTAAATACA
1 TTACTTAAATATA
51207516 TTACTTA
1 TTACTTA
51207523 CTAAAATTTA
Statistics
Matches: 105, Mismatches: 22, Indels: 18
0.72 0.15 0.12
Matches are distributed among these distances:
10 2 0.02
11 4 0.04
12 8 0.08
13 77 0.73
14 11 0.10
15 3 0.03
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.47
Consensus pattern (13 bp):
TTACTTAAATATA
Found at i:51207475 original size:37 final size:37
Alignment explanation
Indices: 51207425--51207497 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
51207415 ACTTAAATAC
51207425 ATTACTTACTAAAATTTGGTTAAATTTATTACTTAAT
1 ATTACTTACTAAAATTTGGTTAAATTTATTACTTAAT
*
51207462 ATTACTTACTAAAATTTGTTTAAATTTATTACTTAA
1 ATTACTTACTAAAATTTGGTTAAATTTATTACTTAA
51207498 ATATGTTACT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.49
Consensus pattern (37 bp):
ATTACTTACTAAAATTTGGTTAAATTTATTACTTAAT
Found at i:51211341 original size:16 final size:16
Alignment explanation
Indices: 51211320--51211369 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
51211310 CTTATATGTA
51211320 AACTTACATAATACAT
1 AACTTACATAATACAT
*
51211336 AACTTACAT-GT---T
1 AACTTACATAATACAT
51211348 AACTTACATAATACAT
1 AACTTACATAATACAT
51211364 AACTTA
1 AACTTA
51211370 TAATTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 10 0.36
13 1 0.04
15 1 0.04
16 16 0.57
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.34
Consensus pattern (16 bp):
AACTTACATAATACAT
Found at i:51211346 original size:28 final size:28
Alignment explanation
Indices: 51211303--51211369 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
51211293 CATAACTATC
*
51211303 ACATAAACTTATATGTAAACTTACATAAT
1 ACAT-AACTTACATGTAAACTTACATAAT
*
51211332 ACATAACTTACATGTTAACTTACATAAT
1 ACATAACTTACATGTAAACTTACATAAT
51211360 ACATAACTTA
1 ACATAACTTA
51211370 TAATTTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
28 32 0.89
29 4 0.11
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.34
Consensus pattern (28 bp):
ACATAACTTACATGTAAACTTACATAAT
Found at i:51211419 original size:28 final size:28
Alignment explanation
Indices: 51211383--51211527 Score: 114
Period size: 28 Copynumber: 5.0 Consensus size: 28
51211373 TTTTTTTTAT
*
51211383 ATATAAACTTACATAATACATTACTTAC
1 ATATAAACTTACATAATACATAACTTAC
* * **
51211411 ATATTAACTTACATAACTTA-TTAA-TATTT
1 ATATAAACTTACATAA--TACATAACT-TAC
*
51211440 ATATAAACTTACATAACTATCACATAAACTTAT
1 ATATAAACTTACAT-A--AT-ACAT-AACTTAC
*
51211473 ATGTAAACTTACATAATACATAACTTAC
1 ATATAAACTTACATAATACATAACTTAC
* * *
51211501 ATGTTAGCTTACATAATACATAACTTA
1 ATATAAACTTACATAATACATAACTTA
51211528 TAAATTTTTT
Statistics
Matches: 95, Mismatches: 12, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
28 47 0.49
29 20 0.21
30 6 0.06
31 1 0.01
32 3 0.03
33 17 0.18
34 1 0.01
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.37
Consensus pattern (28 bp):
ATATAAACTTACATAATACATAACTTAC
Found at i:51211472 original size:158 final size:157
Alignment explanation
Indices: 51211258--51211588 Score: 608
Period size: 158 Copynumber: 2.1 Consensus size: 157
51211248 GTGACACAAG
51211258 AACTTACATAACTTATTAATATTTATATAAACTCACATAACTATCACATAAACTTATATGTAAAC
1 AACTTACATAACTTATTAATATTTATATAAACTCACATAACTATCACATAAACTTATATGTAAAC
*
51211323 TTACATAATACATAACTTACATGTTAACTTACATAATACATAACTTATAATTTTTTTTATATATA
66 TTACATAATACATAACTTACATGTTAACTTACATAATACATAACTTATAAATTTTTTT-TATATA
*
51211388 AACTTACATAATACATTACTTACATATT
130 AACTTACATAACACATTACTTACATATT
*
51211416 AACTTACATAACTTATTAATATTTATATAAACTTACATAACTATCACATAAACTTATATGTAAAC
1 AACTTACATAACTTATTAATATTTATATAAACTCACATAACTATCACATAAACTTATATGTAAAC
*
51211481 TTACATAATACATAACTTACATGTTAGCTTACATAATACATAACTTATAAATTTTTTTTATATAA
66 TTACATAATACATAACTTACATGTTAACTTACATAATACATAACTTATAAATTTTTTTTATATAA
51211546 ACTTACATAACACATTACTTACATATT
131 ACTTACATAACACATTACTTACATATT
*
51211573 AACTTACATAAGTTAT
1 AACTTACATAACTTAT
51211589 CTACAAGCTT
Statistics
Matches: 168, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
157 48 0.29
158 120 0.71
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.40
Consensus pattern (157 bp):
AACTTACATAACTTATTAATATTTATATAAACTCACATAACTATCACATAAACTTATATGTAAAC
TTACATAATACATAACTTACATGTTAACTTACATAATACATAACTTATAAATTTTTTTTATATAA
ACTTACATAACACATTACTTACATATT
Found at i:51211499 original size:16 final size:16
Alignment explanation
Indices: 51211478--51211527 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
51211468 CTTATATGTA
51211478 AACTTACATAATACAT
1 AACTTACATAATACAT
*
51211494 AACTTACAT-GT---T
1 AACTTACATAATACAT
*
51211506 AGCTTACATAATACAT
1 AACTTACATAATACAT
51211522 AACTTA
1 AACTTA
51211528 TAAATTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
12 9 0.35
13 1 0.04
15 1 0.04
16 15 0.58
ACGTcount: A:0.44, C:0.18, G:0.04, T:0.34
Consensus pattern (16 bp):
AACTTACATAATACAT
Found at i:51211667 original size:9 final size:9
Alignment explanation
Indices: 51211635--51212032 Score: 325
Period size: 9 Copynumber: 45.8 Consensus size: 9
51211625 ATAACATAAC
51211635 AACTTACAT
1 AACTTACAT
51211644 AA--TACAT
1 AACTTACAT
* *
51211651 AGCATACAT
1 AACTTACAT
51211660 AACTTACAT
1 AACTTACAT
51211669 AACTTACAT
1 AACTTACAT
*
51211678 AA--TACAA
1 AACTTACAT
51211685 AACTTACAT
1 AACTTACAT
*
51211694 AACTTAAAT
1 AACTTACAT
* *
51211703 ATCTTACAC
1 AACTTACAT
51211712 AACTTACAT
1 AACTTACAT
*
51211721 AACCTACAT
1 AACTTACAT
51211730 AA--TACATTT
1 AACTTACA--T
51211739 AACTTACAT
1 AACTTACAT
*
51211748 AACCTACAT
1 AACTTACAT
51211757 AACTTACAT
1 AACTTACAT
*
51211766 AA--TACAA
1 AACTTACAT
51211773 AACTTACAT
1 AACTTACAT
*
51211782 AACTTAAAT
1 AACTTACAT
* *
51211791 ATCTTACAC
1 AACTTACAT
51211800 AACTTACAT
1 AACTTACAT
*
51211809 AACCTACAT
1 AACTTACAT
51211818 AA--TACATTT
1 AACTTACA--T
51211827 AACTTACAT
1 AACTTACAT
51211836 AACTTACAT
1 AACTTACAT
51211845 AACTTACAT
1 AACTTACAT
*
51211854 AA--TACAA
1 AACTTACAT
51211861 AACTTACAT
1 AACTTACAT
*
51211870 AACTTAAAT
1 AACTTACAT
* *
51211879 ATCTTACAC
1 AACTTACAT
51211888 AACTTACAT
1 AACTTACAT
*
51211897 AATACATA-AT
1 -A-ACTTACAT
51211907 AACTTAC--
1 AACTTACAT
*
51211914 AACTTAAAT
1 AACTTACAT
*
51211923 AACATACAT
1 AACTTACAT
* **
51211932 TACTTTGAT
1 AACTTACAT
51211941 AACTTACAT
1 AACTTACAT
51211950 AACTTACAT
1 AACTTACAT
*
51211959 AA--TACAC
1 AACTTACAT
51211966 AACTTACAT
1 AACTTACAT
* *
51211975 AGCTTACTT
1 AACTTACAT
51211984 AA--TACAT
1 AACTTACAT
*
51211991 AACTTACGT
1 AACTTACAT
51212000 AACTT--AT
1 AACTTACAT
*
51212007 ACACGTACAT
1 A-ACTTACAT
51212017 AACTTACAT
1 AACTTACAT
*
51212026 AATTTAC
1 AACTTAC
51212033 TTAATACATA
Statistics
Matches: 307, Mismatches: 54, Indels: 56
0.74 0.13 0.13
Matches are distributed among these distances:
7 52 0.17
8 7 0.02
9 230 0.75
10 6 0.02
11 12 0.04
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:51211675 original size:34 final size:34
Alignment explanation
Indices: 51211635--51212028 Score: 306
Period size: 34 Copynumber: 11.4 Consensus size: 34
51211625 ATAACATAAC
* *
51211635 AACTTACATAATACATAGCATACATAACTTACAT
1 AACTTACATAATACATAACTTACATAACTTACAT
* *
51211669 AACTTACATAATACAAAACTTACATAACTTAAAT
1 AACTTACATAATACATAACTTACATAACTTACAT
* * *
51211703 ATCTTACACAACTTACATAACCTACATAA--TACATTT
1 AACTTACATAA--TACATAACTTACATAACTTACA--T
*
51211739 AACTTACATAACCTACATAACTTACATAA--TACAA
1 AACTTACATAA--TACATAACTTACATAACTTACAT
* * *
51211773 AACTTACATAACTTAAATATCTTACACAACTTACAT
1 AACTTACATAA--TACATAACTTACATAACTTACAT
*
51211809 AACCTACATAATACATTTAACTTACATAACTTACAT
1 AACTTACATAATACA--TAACTTACATAACTTACAT
* *
51211845 AACTTACATAATACAAAACTTACATAACTTAAAT
1 AACTTACATAATACATAACTTACATAACTTACAT
* * *
51211879 ATCTTACACAACTTACATAATACATA-ATAACTTAC--
1 AACTTACATAA--TACAT-A-ACTTACATAACTTACAT
* * **
51211914 AACTTAAATAACATACATTACTTTGATAACTTACAT
1 AACTTACAT-A-ATACATAACTTACATAACTTACAT
* * *
51211950 AACTTACATAATACACAACTTACATAGCTTACTT
1 AACTTACATAATACATAACTTACATAACTTACAT
* *
51211984 AA--TACATAACTTACGTAACTT--ATACACGTACAT
1 AACTTACATAA--TACATAACTTACATA-ACTTACAT
51212017 AACTTACATAAT
1 AACTTACATAAT
51212029 TTACTTAATA
Statistics
Matches: 289, Mismatches: 49, Indels: 45
0.75 0.13 0.12
Matches are distributed among these distances:
32 10 0.03
33 11 0.04
34 133 0.46
35 19 0.07
36 102 0.35
37 10 0.03
38 4 0.01
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.31
Consensus pattern (34 bp):
AACTTACATAATACATAACTTACATAACTTACAT
Found at i:51211709 original size:43 final size:43
Alignment explanation
Indices: 51211658--51212028 Score: 339
Period size: 43 Copynumber: 8.5 Consensus size: 43
51211648 CATAGCATAC
51211658 ATAACTTACATAACTTACATAATACAAAACTTACATAACTTAA
1 ATAACTTACATAACTTACATAATACAAAACTTACATAACTTAA
* * * *
51211701 ATATCTTACACAACTTACATAACCTACATAA--TACATTTAACTTAC
1 ATAACTTACATAACTTACATAA--TACAAAACTTACA--TAACTTAA
*
51211746 ATAACCTACATAACTTACATAATACAAAACTTACATAACTTAA
1 ATAACTTACATAACTTACATAATACAAAACTTACATAACTTAA
* * * *
51211789 ATATCTTACACAACTTACATAACCTACATAA--TACATTTAACTTAC
1 ATAACTTACATAACTTACATAA--TACAAAACTTACA--TAACTTAA
51211834 ATAACTTACATAACTTACATAATACAAAACTTACATAACTTAA
1 ATAACTTACATAACTTACATAATACAAAACTTACATAACTTAA
* *
51211877 ATATCTTACACAACTTACATAATACATAATAACTTAC--AACTTAA
1 ATAACTTACATAACTTACATAATAC--AA-AACTTACATAACTTAA
* * ** * *
51211921 ATAACATACATTACTTTGATAACTTACATAACTTACATAA--TAC
1 ATAACTTACATAACTTACATAA--TACAAAACTTACATAACTTAA
* * * * *
51211964 ACAACTTACATAGCTTACTTAATACATAACTTACGTAACTT--
1 ATAACTTACATAACTTACATAATACAAAACTTACATAACTTAA
*
51212005 ATACACGTACATAACTTACATAAT
1 ATA-ACTTACATAACTTACATAAT
51212029 TTACTTAATA
Statistics
Matches: 266, Mismatches: 40, Indels: 45
0.76 0.11 0.13
Matches are distributed among these distances:
41 17 0.06
42 17 0.06
43 121 0.45
44 24 0.09
45 77 0.29
46 10 0.04
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (43 bp):
ATAACTTACATAACTTACATAATACAAAACTTACATAACTTAA
Found at i:51211747 original size:88 final size:88
Alignment explanation
Indices: 51211639--51211960 Score: 483
Period size: 88 Copynumber: 3.7 Consensus size: 88
51211629 CATAACAACT
* *
51211639 TACATAATACA--TAGCATACATAACTTACATAACTTACATAATACAAAACTTACATAACTTAAA
1 TACATAATACATTTAACTTACATAACTTACATAACTTACATAATACAAAACTTACATAACTTAAA
51211702 TATCTTACACAACTTACATAACC
66 TATCTTACACAACTTACATAACC
*
51211725 TACATAATACATTTAACTTACATAACCTACATAACTTACATAATACAAAACTTACATAACTTAAA
1 TACATAATACATTTAACTTACATAACTTACATAACTTACATAATACAAAACTTACATAACTTAAA
51211790 TATCTTACACAACTTACATAACC
66 TATCTTACACAACTTACATAACC
51211813 TACATAATACATTTAACTTACATAACTTACATAACTTACATAATACAAAACTTACATAACTTAAA
1 TACATAATACATTTAACTTACATAACTTACATAACTTACATAATACAAAACTTACATAACTTAAA
51211878 TATCTTACACAACTTACATAA--
66 TATCTTACACAACTTACATAACC
* * * * ** *
51211899 TACATAATA-ACTTACAACTTAAATAACATACATTACTTTGATAACTTACATAACTTACATAA
1 TACATAATACA-TT-TAACTTACATAACTTACATAACTTACATAA--TACAAAACTTACATAA
51211961 TACACAACTT
Statistics
Matches: 219, Mismatches: 11, Indels: 9
0.92 0.05 0.04
Matches are distributed among these distances:
85 1 0.00
86 22 0.10
87 24 0.11
88 157 0.72
89 15 0.07
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (88 bp):
TACATAATACATTTAACTTACATAACTTACATAACTTACATAATACAAAACTTACATAACTTAAA
TATCTTACACAACTTACATAACC
Found at i:51211969 original size:16 final size:16
Alignment explanation
Indices: 51211945--51211975 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51211935 TTTGATAACT
*
51211945 TACATAACTTACATAA
1 TACACAACTTACATAA
51211961 TACACAACTTACATA
1 TACACAACTTACATA
51211976 GCTTACTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACAACTTACATAA
Found at i:51217678 original size:21 final size:21
Alignment explanation
Indices: 51217630--51217694 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
51217620 AACTTAAAGC
* * * *
51217630 AGAGGCGACAACGAGGGAAGC
1 AGAGGCTACAGCGAGAGAAGT
51217651 AGAGGCTACAGCGAGAGAAGT
1 AGAGGCTACAGCGAGAGAAGT
* *
51217672 AGAGGCTGCAGCGCGAGAAGT
1 AGAGGCTACAGCGAGAGAAGT
51217693 AG
1 AG
51217695 CGAGAGAAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.35, C:0.17, G:0.42, T:0.06
Consensus pattern (21 bp):
AGAGGCTACAGCGAGAGAAGT
Found at i:51218252 original size:22 final size:22
Alignment explanation
Indices: 51218209--51218252 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
51218199 TAGTGACGCT
* **
51218209 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAAACCTA
51218231 AAAAAACGCCGCTAAAAACCTA
1 AAAAAACGCCGCTAAAAACCTA
51218253 TTCTGGTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.27, G:0.16, T:0.09
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAAACCTA
Found at i:51218605 original size:15 final size:15
Alignment explanation
Indices: 51218585--51218616 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
51218575 TATTATTTAA
51218585 TAAAATTTTAATATC
1 TAAAATTTTAATATC
51218600 TAAAATTTTAATATC
1 TAAAATTTTAATATC
51218615 TA
1 TA
51218617 CTTTTATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (15 bp):
TAAAATTTTAATATC
Found at i:51224955 original size:18 final size:19
Alignment explanation
Indices: 51224923--51224961 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
51224913 TAGCAATTCC
*
51224923 ATGCATGAAATTTCAACAA
1 ATGCATGAAAGTTCAACAA
*
51224942 ATGC-TGAAAGTTCAGCAA
1 ATGCATGAAAGTTCAACAA
51224960 AT
1 AT
51224962 CAAAGTCCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (19 bp):
ATGCATGAAAGTTCAACAA
Found at i:51226800 original size:20 final size:21
Alignment explanation
Indices: 51226775--51226817 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
51226765 ATAATATAGA
*
51226775 AAAAATAATTAAA-ACAAAAC
1 AAAAATAAATAAACACAAAAC
*
51226795 AAAAATAAATAAACACAACAC
1 AAAAATAAATAAACACAAAAC
51226816 AA
1 AA
51226818 CACAAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.74, C:0.14, G:0.00, T:0.12
Consensus pattern (21 bp):
AAAAATAAATAAACACAAAAC
Found at i:51227983 original size:54 final size:53
Alignment explanation
Indices: 51227888--51227991 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 53
51227878 TAAAGGTCAT
* *
51227888 GTTCTTTAGCGGCGCTTCCTCGAAAACGCCGCTAAAGGTAATGTTCTTTAGCA
1 GTTCTTTAGCAGCGCTTCCTCGAAAACGCCGCTAAAAGTAATGTTCTTTAGCA
*
51227941 GTTCTTTAGCAGCGCTTTCTTC-ACAAACGCCGCTAAAAGTAATGTTCTTTA
1 GTTCTTTAGCAGCGC-TTCCTCGA-AAACGCCGCTAAAAGTAATGTTCTTTA
51227992 ACGGCGTTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
53 15 0.33
54 31 0.67
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (53 bp):
GTTCTTTAGCAGCGCTTCCTCGAAAACGCCGCTAAAAGTAATGTTCTTTAGCA
Found at i:51228759 original size:26 final size:26
Alignment explanation
Indices: 51228721--51228779 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
51228711 ATTACAATTT
*
51228721 AATTATTTTATAAGCTATAGAGTAAG
1 AATTATTTGATAAGCTATAGAGTAAG
51228747 AATTATTTGATAAGCTATAGAGTAAG
1 AATTATTTGATAAGCTATAGAGTAAG
51228773 AATTATT
1 AATTATT
51228780 ATGCAACGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.39
Consensus pattern (26 bp):
AATTATTTGATAAGCTATAGAGTAAG
Found at i:51229195 original size:18 final size:18
Alignment explanation
Indices: 51229172--51229214 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
51229162 CCCCAATCTA
**
51229172 AACCCAAGTATTCAACCC
1 AACCCAAGTACCCAACCC
*
51229190 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
51229208 AACCCAA
1 AACCCAA
51229215 TCATAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.44, G:0.02, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:51229516 original size:12 final size:12
Alignment explanation
Indices: 51229499--51229523 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51229489 TGTTATTTCG
51229499 GGTCGGTTAACC
1 GGTCGGTTAACC
51229511 GGTCGGTTAACC
1 GGTCGGTTAACC
51229523 G
1 G
51229524 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:51230610 original size:16 final size:16
Alignment explanation
Indices: 51230573--51230612 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
51230563 ATTTACCCTA
* *
51230573 GCGACGGCAGAGGAGT
1 GCGACGGTAGAGGACT
51230589 GCGACGGTAGAGGACT
1 GCGACGGTAGAGGACT
*
51230605 GTGACGGT
1 GCGACGGT
51230613 CGACGTGCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.23, C:0.17, G:0.47, T:0.12
Consensus pattern (16 bp):
GCGACGGTAGAGGACT
Found at i:51230722 original size:24 final size:24
Alignment explanation
Indices: 51230695--51230748 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
51230685 TCTAGATTTG
51230695 GGGGAATTTTGGGGAAAAATTGGA
1 GGGGAATTTTGGGGAAAAATTGGA
*
51230719 GGGGAATTTTGGGGAAAAATTTGA
1 GGGGAATTTTGGGGAAAAATTGGA
51230743 GGGGAA
1 GGGGAA
51230749 AACTGAGGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.33, C:0.00, G:0.43, T:0.24
Consensus pattern (24 bp):
GGGGAATTTTGGGGAAAAATTGGA
Found at i:51231066 original size:20 final size:20
Alignment explanation
Indices: 51231041--51231078 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
51231031 AGTAATGCAT
*
51231041 TTTTAAAAAATAATTACACA
1 TTTTAAAAAATAAATACACA
51231061 TTTTAAAAAATAAATACA
1 TTTTAAAAAATAAATACA
51231079 TCAATATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (20 bp):
TTTTAAAAAATAAATACACA
Found at i:51231303 original size:15 final size:16
Alignment explanation
Indices: 51231279--51231312 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
51231269 TATTTTTTAA
*
51231279 ATATTAATTTATATTT
1 ATATTAATTTACATTT
51231295 ATATT-ATTTACATTT
1 ATATTAATTTACATTT
51231310 ATA
1 ATA
51231313 GTCTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (16 bp):
ATATTAATTTACATTT
Found at i:51231482 original size:28 final size:28
Alignment explanation
Indices: 51231450--51231512 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
51231440 CCGTAAATCT
* *
51231450 TAAACCCCAAACTATAAACCCTAAATCCC
1 TAAACCCCAAACCATAAAACCTAAA-CCC
*
51231479 -AAACCCCAAACCATAAAACTTAAACCC
1 TAAACCCCAAACCATAAAACCTAAACCC
51231506 TAAACCC
1 TAAACCC
51231513 GTCAATTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 3 0.10
28 27 0.90
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (28 bp):
TAAACCCCAAACCATAAAACCTAAACCC
Found at i:51231609 original size:21 final size:22
Alignment explanation
Indices: 51231591--51231633 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
51231581 ACCGTAAATC
51231591 TTAAACCC-TAAACCATAAACA
1 TTAAACCCGTAAACCATAAACA
*
51231612 TTAAACCCGTAAACCACAAACA
1 TTAAACCCGTAAACCATAAACA
51231634 ACAACCACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.51, C:0.30, G:0.02, T:0.16
Consensus pattern (22 bp):
TTAAACCCGTAAACCATAAACA
Found at i:51232263 original size:114 final size:115
Alignment explanation
Indices: 51232087--51232301 Score: 263
Period size: 114 Copynumber: 1.9 Consensus size: 115
51232077 CGCTTTCACT
* *** * * * *
51232087 AAAGCGCCACTAAAAGTTGCTCTATAGCGGCGTTTTCAAATAAGCGCCGCTAATGCATCTATAGT
1 AAAGCGCCACTAAAAGCTGAAATATAGAGGCGTTTTCAAATAAGCGCCGCTAACGCAGCTATAGC
* * *
51232152 TCAAGCCGTAACGATGCGTTTTGG-TCAAAACTTTTGGGCGTTTTAGAAG
66 TCAAGACGAAACGATGCGTTTCGGTTCAAAACTTTTGGGCGTTTTAGAAG
***
51232201 AAAGCGCCACTAAAAGCTGAAATATAGAGGCGTTTTCTGGTAAGCGCCGCTAACG-ACGCTATAG
1 AAAGCGCCACTAAAAGCTGAAATATAGAGGCGTTTTCAAATAAGCGCCGCTAACGCA-GCTATAG
* *
51232265 CTCAAGACGAAACGTTGCGTTTCGGTTTAAAACTTTT
65 CTCAAGACGAAACGATGCGTTTCGGTTCAAAACTTTT
51232302 CAGAGTTTTC
Statistics
Matches: 83, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
113 1 0.01
114 72 0.87
115 10 0.12
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (115 bp):
AAAGCGCCACTAAAAGCTGAAATATAGAGGCGTTTTCAAATAAGCGCCGCTAACGCAGCTATAGC
TCAAGACGAAACGATGCGTTTCGGTTCAAAACTTTTGGGCGTTTTAGAAG
Found at i:51232523 original size:114 final size:114
Alignment explanation
Indices: 51232373--51233081 Score: 952
Period size: 114 Copynumber: 6.4 Consensus size: 114
51232363 CTATTGGCTC
51232373 TATACCTCAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCCG
1 TATACCTCAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCCG
*
51232438 CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTTTAA
66 CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCTAA
* * * *
51232487 TATACATCAAGACCTAACGTTGCATTTTGGTTAAGATATTTTGCGGCGC--ATTAT-A-------
1 TATACCTCAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCCG
51232542 --AA--ATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCTAA
66 CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCTAA
* * *
51232587 TATACATCAAGACCAAATGCTGCATTTTGGTTAAGATATTTTGCGGTGCTTTTTATAATGCGCCG
1 TATACCTCAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCCG
51232652 CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCTAAA
66 CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCT-AA
* *
51232702 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCTG
1 TATACCTCAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCCG
* *
51232767 CTAATGCTGTGCTTTAGCGGCGTTTTTTCATAAGCGCCACTAATTCTAA
66 CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCTAA
*
51232816 TATACCTCAAGACCAAACGCTGC-----------G-T-TTTTGTGGCGCTTTTTATAATGCGCCG
1 TATACCTCAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCCG
*** * * *
51232868 CTAATTCCGTGCTTTAGCGGTGTTTTTTCATAAGTGCCACTAATTCTAA
66 CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCTAA
** * * *
51232917 TATACCTCAAGACCAAGTGCTGCGTTTTGGTTAAGATATTTTGCGGCGC-TTTTATAAAGGCGTC
1 TATACCTCAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTAT-AATGCGCC
* *
51232981 GCTAATTATGTGCTTTAGCGGCGTTTTTTCATAAGCGCCACTAATTCTAA
65 GCTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCTAA
* *
51233031 TATACCTCAAGACCAAACGCTGCGTTTTGGTTACGATATTTTGCGGCGCTT
1 TATACCTCAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCGCTT
51233082 ACAAGTAAAC
Statistics
Matches: 530, Mismatches: 35, Indels: 59
0.85 0.06 0.09
Matches are distributed among these distances:
100 87 0.16
101 91 0.17
102 7 0.01
103 2 0.00
111 1 0.00
112 7 0.01
113 7 0.01
114 220 0.42
115 108 0.20
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (114 bp):
TATACCTCAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCCG
CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCTAA
Found at i:51232783 original size:329 final size:328
Alignment explanation
Indices: 51232373--51233081 Score: 1048
Period size: 329 Copynumber: 2.2 Consensus size: 328
51232363 CTATTGGCTC
*
51232373 TATACCTCAAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCCG
1 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCCG
* *
51232438 CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTTTAATATACATCAAGACCTA
66 CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCTAATATACATCAAGACCAA
* * * *
51232503 ACGTTGCATTTTGGTTAAG-ATATT-T-TGCGGCGCATTATAAAATGTGCTTTAGCGGCGTTTTC
131 ACGCTGCATTTTGGTGAAGCATATTATATGCGCCGC--TA-AAAACGTGCTTTAGCGGCGTTTTC
51232565 TCATAAGCGCCACTAATTCTAATATACATCAAGACCAAATGCTGCATTTTGGTTAAGATATTTTG
193 TCATAAGCGCCACTAATTCTAATATACATCAAGACCAAATGCTGCATTTTGGTTAAGATATTTTG
* *
51232630 CGGTGCTTTT-TATAATGCGCCGCTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTA
258 CGGCGCTTTTATA-AAGGCGCCGCTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTA
51232694 ATTCTAAA
322 ATTCT-AA
*
51232702 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCTG
1 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCCG
* * *
51232767 CTAATGCTGTGCTTTAGCGGCGTTTTTTCATAAGCGCCACTAATTCTAATATACCTCAAGACCAA
66 CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCTAATATACATCAAGACCAA
* * ** * * *** * *
51232832 ACGCTGCGTTTTTGTGGCGCTTTTTATAATGCGCCGCTAATTCCGTGCTTTAGCGGTGTTTTTTC
131 ACGCTGCATTTTGGTGAAGCATATTAT-ATGCGCCGCTAAAAACGTGCTTTAGCGGCGTTTTCTC
* * * *
51232897 ATAAGTGCCACTAATTCTAATATACCTCAAGACCAAGTGCTGCGTTTTGGTTAAGATATTTTGCG
195 ATAAGCGCCACTAATTCTAATATACATCAAGACCAAATGCTGCATTTTGGTTAAGATATTTTGCG
* * *
51232962 GCGCTTTTATAAAGGCGTCGCTAATTATGTGCTTTAGCGGCGTTTTTTCATAAGCGCCACTAATT
260 GCGCTTTTATAAAGGCGCCGCTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATT
51233027 CTAA
325 CTAA
*
51233031 TATACCTCAAGACCAAACGCTGCGTTTTGGTTACGATATTTTGCGGCGCTT
1 TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT
51233082 ACAAGTAAAC
Statistics
Matches: 343, Mismatches: 32, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
329 188 0.55
330 143 0.42
331 5 0.01
333 7 0.02
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (328 bp):
TATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTTATAATGCGCCG
CTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTCTAATATACATCAAGACCAA
ACGCTGCATTTTGGTGAAGCATATTATATGCGCCGCTAAAAACGTGCTTTAGCGGCGTTTTCTCA
TAAGCGCCACTAATTCTAATATACATCAAGACCAAATGCTGCATTTTGGTTAAGATATTTTGCGG
CGCTTTTATAAAGGCGCCGCTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCCACTAATTC
TAA
Found at i:51232915 original size:101 final size:101
Alignment explanation
Indices: 51232740--51233058 Score: 406
Period size: 101 Copynumber: 3.0 Consensus size: 101
51232730 GGTTAAGATA
* * *
51232740 TTTTGCGGCGCTTTTTATAATGCGCTGCTAATGCTGTGCTTTAGCGGCGTTTTTTCATAAGCGCC
1 TTTTGTGGCGCTTTTTATAATGCGCCGCTAATTCTGTGCTTTAGCGGCGTTTTTTCATAAGCGCC
51232805 ACTAATTCTAATATACCTCAAGACCAAACGCTGCGT
66 ACTAATTCTAATATACCTCAAGACCAAACGCTGCGT
* * *
51232841 TTTTGTGGCGCTTTTTATAATGCGCCGCTAATTCCGTGCTTTAGCGGTGTTTTTTCATAAGTGCC
1 TTTTGTGGCGCTTTTTATAATGCGCCGCTAATTCTGTGCTTTAGCGGCGTTTTTTCATAAGCGCC
**
51232906 ACTAATTCTAATATACCTCAAGACCAAGTGCTGCGTT
66 ACTAATTCTAATATACCTCAAGACCAAACGCTGCG-T
* * *
51232943 TTGGTTAAGATATTTTGCGGCGC-TTTTATAAAGGCGTCGCTAATTATGTGCTTTAGCGGCGTTT
1 TT--TT--G------T--GGCGCTTTTTAT-AATGCGCCGCTAATTCTGTGCTTTAGCGGCGTTT
51233007 TTTCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACGCTGCGT
53 TTTCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACGCTGCGT
51233056 TTT
1 TTT
51233059 GGTTACGATA
Statistics
Matches: 188, Mismatches: 16, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
101 92 0.49
102 3 0.02
104 2 0.01
106 1 0.01
111 1 0.01
112 1 0.01
113 9 0.05
114 79 0.42
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (101 bp):
TTTTGTGGCGCTTTTTATAATGCGCCGCTAATTCTGTGCTTTAGCGGCGTTTTTTCATAAGCGCC
ACTAATTCTAATATACCTCAAGACCAAACGCTGCGT
Found at i:51232947 original size:215 final size:216
Alignment explanation
Indices: 51232625--51233058 Score: 712
Period size: 215 Copynumber: 2.0 Consensus size: 216
51232615 GGTTAAGATA
* *
51232625 TTTTGCGGTGCTTTTTATAATGCGCCGCTAATGATGTGCTTTAGCGGCGTTTTCTCATAAGCGCC
1 TTTTGCGGCGCTTTTTATAATGCGCCGCTAATGACGTGCTTTAGCGGCGTTTTCTCATAAGCGCC
51232690 ACTAATTCTAAATATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTT
66 ACTAATTCTAAATATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTT
* *
51232755 -TATAATGCG-CTGCTAATGCTGTGCTTTAGCGGCGTTTTTTCATAAGCGCCACTAATTCTAATA
131 ATA-AAGGCGTC-GCTAATGATGTGCTTTAGCGGCGTTTTTTCATAAGCGCCACTAATTCTAATA
51232818 TACCTCAAGACCAAACGCTGCGT
194 TACCTCAAGACCAAACGCTGCGT
* ** * * *
51232841 TTTTGTGGCGCTTTTTATAATGCGCCGCTAATTCCGTGCTTTAGCGGTGTTTTTTCATAAGTGCC
1 TTTTGCGGCGCTTTTTATAATGCGCCGCTAATGACGTGCTTTAGCGGCGTTTTCTCATAAGCGCC
**
51232906 ACTAATTCT-AATATACCTCAAGACCAAGTGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTT
66 ACTAATTCTAAATATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTT
*
51232970 ATAAAGGCGTCGCTAATTATGTGCTTTAGCGGCGTTTTTTCATAAGCGCCACTAATTCTAATATA
131 ATAAAGGCGTCGCTAATGATGTGCTTTAGCGGCGTTTTTTCATAAGCGCCACTAATTCTAATATA
51233035 CCTCAAGACCAAACGCTGCGT
196 CCTCAAGACCAAACGCTGCGT
51233056 TTT
1 TTT
51233059 GGTTACGATA
Statistics
Matches: 203, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
215 134 0.66
216 69 0.34
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (216 bp):
TTTTGCGGCGCTTTTTATAATGCGCCGCTAATGACGTGCTTTAGCGGCGTTTTCTCATAAGCGCC
ACTAATTCTAAATATACCTCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTT
ATAAAGGCGTCGCTAATGATGTGCTTTAGCGGCGTTTTTTCATAAGCGCCACTAATTCTAATATA
CCTCAAGACCAAACGCTGCGT
Found at i:51233122 original size:114 final size:113
Alignment explanation
Indices: 51232866--51233122 Score: 304
Period size: 114 Copynumber: 2.3 Consensus size: 113
51232856 TATAATGCGC
** * ** *
51232866 CGCTAATTCCGTGCTTTAGCGGTGTTTTTTCATAAGTGCCACTAATTCTAATATACCTCAAGACC
1 CGCTAATTATGTGCTTTAACGGCATTTTTTCATAAGCGCCACTAATTCTAATATACCTCAAGACC
** ** **
51232931 AAGTGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTATAAAGGCG
66 AAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCAATAAACACG
* *
51232979 TCGCTAATTATGTGCTTTAGCGGCGTTTTTTCATAAGCGCCACTAATTCTAATATACCTCAAGAC
1 -CGCTAATTATGTGCTTTAACGGCATTTTTTCATAAGCGCCACTAATTCTAATATACCTCAAGAC
*
51233044 CAAACGCTGCGTTTTGGTTACGATATTTTGCGGCGCTTACAAGTAAACACG
65 CAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT-CAA-TAAACACG
*
51233095 -GCTAA-T-TGTGCTATTTAATGGCATTTTT
1 CGCTAATTATGTGC--TTTAACGGCATTTTT
51233123 GTAGTGCGCT
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
112 5 0.04
113 1 0.01
114 112 0.90
115 1 0.01
116 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (113 bp):
CGCTAATTATGTGCTTTAACGGCATTTTTTCATAAGCGCCACTAATTCTAATATACCTCAAGACC
AAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCAATAAACACG
Found at i:51243402 original size:14 final size:15
Alignment explanation
Indices: 51243383--51243411 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51243373 AACGGAAAAA
51243383 GAAAGT-TTTGATTG
1 GAAAGTCTTTGATTG
51243397 GAAAGTCTTTGATTG
1 GAAAGTCTTTGATTG
51243412 TGTATGCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.28, C:0.03, G:0.28, T:0.41
Consensus pattern (15 bp):
GAAAGTCTTTGATTG
Found at i:51249211 original size:15 final size:15
Alignment explanation
Indices: 51249189--51249221 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
51249179 AATGGGTTTC
51249189 TCTTTCT-TT-TTTT
1 TCTTTCTCTTCTTTT
51249202 TCTTTCTCTTCTTTT
1 TCTTTCTCTTCTTTT
51249217 TCTTT
1 TCTTT
51249222 AGCTATCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 2 0.11
15 9 0.50
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TCTTTCTCTTCTTTT
Found at i:51249887 original size:20 final size:20
Alignment explanation
Indices: 51249862--51249900 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
51249852 CAAGTAAAAG
51249862 AAATCAGGAACTTCAGCAAA
1 AAATCAGGAACTTCAGCAAA
51249882 AAATCAGGAACTTCAGCAA
1 AAATCAGGAACTTCAGCAA
51249901 CACCAAGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.21, G:0.15, T:0.15
Consensus pattern (20 bp):
AAATCAGGAACTTCAGCAAA
Found at i:51252213 original size:21 final size:23
Alignment explanation
Indices: 51252178--51252221 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
51252168 TTTTTGAACT
*
51252178 TTTTTCTTCTTCTTCTTCCTTTC
1 TTTTTCTTCTTCTTCTCCCTTTC
51252201 TTTTTC-T-TTCTTCTCCCTTTC
1 TTTTTCTTCTTCTTCTCCCTTTC
51252222 ATAATTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 13 0.65
22 1 0.05
23 6 0.30
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTTTCTTCTTCTTCTCCCTTTC
Found at i:51252612 original size:7 final size:7
Alignment explanation
Indices: 51252600--51252627 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
51252590 TTCTTCTCTC
51252600 TGTTTCT
1 TGTTTCT
51252607 TGTTTCT
1 TGTTTCT
51252614 TGTTTCT
1 TGTTTCT
51252621 TGTTTCT
1 TGTTTCT
51252628 CTTTCAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.00, C:0.14, G:0.14, T:0.71
Consensus pattern (7 bp):
TGTTTCT
Found at i:51255185 original size:43 final size:43
Alignment explanation
Indices: 51255119--51255233 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
51255109 AACTCGTACA
* *
51255119 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCACATA-TCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAAACACA-AGTCG
**
51255162 ATGCCACTGTCCCAGACAAGGTCTTACACGTAAACACAAGTCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAAACACAAGTCG
*
51255205 ATGCCAATGTCCCAGACGTGGTCTTACAC
1 ATGCCACTGTCCCAGACGTGGTCTTACAC
51255234 AAAAAACACA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
42 3 0.05
43 60 0.95
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGTAAACACAAGTCG
Found at i:51265326 original size:20 final size:21
Alignment explanation
Indices: 51265301--51265339 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
51265291 AGAGAACAAA
*
51265301 AAAATTAGAG-AAATAAAAGG
1 AAAATTAAAGAAAATAAAAGG
51265321 AAAATTAAAGAAAATAAAA
1 AAAATTAAAGAAAATAAAA
51265340 AGAATAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.72, C:0.00, G:0.13, T:0.15
Consensus pattern (21 bp):
AAAATTAAAGAAAATAAAAGG
Found at i:51270827 original size:13 final size:14
Alignment explanation
Indices: 51270802--51270844 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
51270792 TTTAGCTGTT
*
51270802 TAAATAATTTAAAA
1 TAAATATTTTAAAA
51270816 TAAA-ATTTTAAAAA
1 TAAATATTTT-AAAA
*
51270830 TAAATATTATAAAA
1 TAAATATTTTAAAA
51270844 T
1 T
51270845 CTCTTAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 4 0.16
14 17 0.68
15 4 0.16
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TAAATATTTTAAAA
Found at i:51291638 original size:17 final size:17
Alignment explanation
Indices: 51291616--51291658 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
51291606 AGTATATTGA
*
51291616 ATATTAACTT-TTATATT
1 ATATTAAATTATT-TATT
51291633 ATATTAAATTATTTATT
1 ATATTAAATTATTTATT
*
51291650 ATAATAAAT
1 ATATTAAAT
51291659 AATATTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (17 bp):
ATATTAAATTATTTATT
Found at i:51334277 original size:17 final size:16
Alignment explanation
Indices: 51334256--51334340 Score: 52
Period size: 17 Copynumber: 5.1 Consensus size: 16
51334246 TGTAATATTT
51334256 TTAATTTTATTTTTAA
1 TTAATTTTATTTTTAA
*
51334272 TGTAATTTCA-TTTTAA
1 T-TAATTTTATTTTTAA
* *
51334288 TT-A-TTT-TTATGAA
1 TTAATTTTATTTTTAA
51334301 GTTAGATTTTATAATTATTAA
1 -TTA-ATTTTAT--TT-TTAA
51334322 TTAATTTTATATTTTAA
1 TTAATTTTAT-TTTTAA
51334339 TT
1 TT
51334341 TAGATATTGG
Statistics
Matches: 53, Mismatches: 6, Indels: 19
0.68 0.08 0.24
Matches are distributed among these distances:
13 6 0.11
14 3 0.06
15 1 0.02
16 9 0.17
17 16 0.30
18 4 0.08
19 7 0.13
20 4 0.08
21 3 0.06
ACGTcount: A:0.33, C:0.01, G:0.05, T:0.61
Consensus pattern (16 bp):
TTAATTTTATTTTTAA
Found at i:51334330 original size:19 final size:17
Alignment explanation
Indices: 51334256--51334340 Score: 58
Period size: 16 Copynumber: 5.1 Consensus size: 17
51334246 TGTAATATTT
51334256 TTAATTTTAT-TTTTAA
1 TTAATTTTATATTTTAA
*
51334272 TGTAA-TTT-CATTTTAA
1 T-TAATTTTATATTTTAA
*
51334288 TT-ATTTT-TA--TGAA
1 TTAATTTTATATTTTAA
51334301 GTTAGATTTTATAATTATTAA
1 -TTA-ATTTTAT-ATT-TTAA
51334322 TTAATTTTATATTTTAA
1 TTAATTTTATATTTTAA
51334339 TT
1 TT
51334341 TAGATATTGG
Statistics
Matches: 54, Mismatches: 4, Indels: 21
0.68 0.05 0.27
Matches are distributed among these distances:
13 3 0.06
14 3 0.06
15 5 0.09
16 16 0.30
17 10 0.19
18 4 0.07
19 7 0.13
20 3 0.06
21 3 0.06
ACGTcount: A:0.33, C:0.01, G:0.05, T:0.61
Consensus pattern (17 bp):
TTAATTTTATATTTTAA
Found at i:51334934 original size:19 final size:19
Alignment explanation
Indices: 51334910--51334948 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
51334900 ACATAAAAAG
*
51334910 AGTTGTGTTAATTTTTTTA
1 AGTTGTGTTAATTTTATTA
*
51334929 AGTTGTGTTAGTTTTATTA
1 AGTTGTGTTAATTTTATTA
51334948 A
1 A
51334949 TGTAAAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.18, T:0.59
Consensus pattern (19 bp):
AGTTGTGTTAATTTTATTA
Found at i:51340911 original size:55 final size:56
Alignment explanation
Indices: 51340821--51340926 Score: 135
Period size: 55 Copynumber: 1.9 Consensus size: 56
51340811 TTGTTTTGTC
* ** * *
51340821 AAAAACTCCACTATGAAAAATCATTATTCGGTTTTTAAATATTTTATTTTACCAAT
1 AAAAACTCCACTATGAAAAACCATTATTCCATTTTTAAACACTTTATTTTACCAAT
*
51340877 AAAAACTCC-CTCTGAAAAACCATT-TTCCCATTTTTAAACACTTTATTTTA
1 AAAAACTCCACTATGAAAAACCATTATT-CCATTTTTAAACACTTTATTTTA
51340927 TTAATTTTGT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
54 2 0.05
55 32 0.74
56 9 0.21
ACGTcount: A:0.38, C:0.19, G:0.04, T:0.40
Consensus pattern (56 bp):
AAAAACTCCACTATGAAAAACCATTATTCCATTTTTAAACACTTTATTTTACCAAT
Found at i:51342416 original size:2 final size:2
Alignment explanation
Indices: 51342409--51342435 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
51342399 TTTTAATGTT
51342409 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
51342436 TATTTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51349297 original size:8 final size:8
Alignment explanation
Indices: 51349284--51349311 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
51349274 ATCTATATTT
51349284 ATTATGCA
1 ATTATGCA
51349292 ATTATGCA
1 ATTATGCA
51349300 ATTATGCA
1 ATTATGCA
51349308 ATTA
1 ATTA
51349312 ACGACATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (8 bp):
ATTATGCA
Found at i:51356809 original size:3 final size:3
Alignment explanation
Indices: 51356795--51356828 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
51356785 AACGGTTTGG
*
51356795 GCT GCT GTT GCT GCT GCT GCT GCT GCT GCT GCT G
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT G
51356829 ATGACGCTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.29, G:0.35, T:0.35
Consensus pattern (3 bp):
GCT
Found at i:51360717 original size:33 final size:33
Alignment explanation
Indices: 51360680--51360746 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 33
51360670 TTCTGCCTTC
*
51360680 GCCCCTAAATGTGACAAAAA-GAGTAAATATTAA
1 GCCCCTAAATGTAACAAAAAGGA-TAAATATTAA
51360713 GCCCCTAAATGTAACAAAAAGGATAAATATTAA
1 GCCCCTAAATGTAACAAAAAGGATAAATATTAA
51360746 G
1 G
51360747 GGTTAGATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 30 0.94
34 2 0.06
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.21
Consensus pattern (33 bp):
GCCCCTAAATGTAACAAAAAGGATAAATATTAA
Found at i:51362192 original size:19 final size:17
Alignment explanation
Indices: 51362166--51362211 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 17
51362156 TAAACAAGAT
*
51362166 ATTTTTTAAAATTATATA
1 ATTTTTTAAAATGA-ATA
51362184 ATATTTTTACAAATGAATA
1 AT-TTTTTA-AAATGAATA
51362203 ATTTTTTAA
1 ATTTTTTAA
51362212 GGTGACCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 1 0.04
18 8 0.32
19 11 0.44
20 5 0.20
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
ATTTTTTAAAATGAATA
Found at i:51362341 original size:21 final size:19
Alignment explanation
Indices: 51362291--51362344 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
51362281 GTATTTTGTT
51362291 TATTATATAATTTTTATGAA
1 TATT-TATAATTTTTATGAA
* * *
51362311 TTTTTTTAATTTTTTTGTACA
1 TATTTATAATTTTTATG-A-A
51362332 TATTTATAATTTT
1 TATTTATAATTTT
51362345 AAAAATATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 11 0.41
20 4 0.15
21 12 0.44
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (19 bp):
TATTTATAATTTTTATGAA
Found at i:51363345 original size:18 final size:18
Alignment explanation
Indices: 51363322--51363359 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
51363312 AGGGTGTCAC
*
51363322 TTTTTC-TGATGATTCAAG
1 TTTTTCGTGATCATT-AAG
51363340 TTTTTCGTGATCATTAAG
1 TTTTTCGTGATCATTAAG
51363358 TT
1 TT
51363360 ACTGTAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.53
Consensus pattern (18 bp):
TTTTTCGTGATCATTAAG
Found at i:51385915 original size:14 final size:15
Alignment explanation
Indices: 51385896--51385926 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
51385886 GTTTAGCTTA
51385896 TTTATAT-TAATTTT
1 TTTATATATAATTTT
51385910 TTTATATATAATTTT
1 TTTATATATAATTTT
51385925 TT
1 TT
51385927 AAAATTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTATATATAATTTT
Found at i:51385950 original size:20 final size:20
Alignment explanation
Indices: 51385911--51385950 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
51385901 ATTAATTTTT
** *
51385911 TTATATATAATTTTTTAAAA
1 TTATATATAATTAATAAAAA
51385931 TTATATATAATTAATAAAAA
1 TTATATATAATTAATAAAAA
51385951 ATATTAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TTATATATAATTAATAAAAA
Found at i:51388200 original size:18 final size:20
Alignment explanation
Indices: 51388165--51388205 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
51388155 ATATTATTTT
*
51388165 AAAATATATATAATACATCA
1 AAAATATATATAAAACATCA
51388185 AAAATAT-TA-AAAACATCA
1 AAAATATATATAAAACATCA
51388203 AAA
1 AAA
51388206 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 2 0.10
20 7 0.35
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAATATATATAAAACATCA
Found at i:51388320 original size:30 final size:30
Alignment explanation
Indices: 51388286--51388350 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
51388276 CAACTTAACA
*
51388286 AACAAATATC-TCTAAAATAATAACAAAATT
1 AACAAATATCTTC-AAAATAATAACAAAATG
*
51388316 AACAAATGTCTTCAAAATAATAACAAAATG
1 AACAAATATCTTCAAAATAATAACAAAATG
51388346 AACAA
1 AACAA
51388351 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 30 0.94
31 2 0.06
ACGTcount: A:0.60, C:0.14, G:0.03, T:0.23
Consensus pattern (30 bp):
AACAAATATCTTCAAAATAATAACAAAATG
Found at i:51388405 original size:22 final size:22
Alignment explanation
Indices: 51388380--51388422 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
51388370 TATCCAAACA
51388380 ATAATAACAAAATAGTAGCAAC
1 ATAATAACAAAATAGTAGCAAC
** *
51388402 ATAATAGTAAAATGGTAGCAA
1 ATAATAACAAAATAGTAGCAA
51388423 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAC
Found at i:51405289 original size:2 final size:2
Alignment explanation
Indices: 51405284--51405315 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
51405274 AAAAAAAAAT
51405284 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
51405316 CTGCTTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:51406677 original size:174 final size:173
Alignment explanation
Indices: 51406236--51406842 Score: 820
Period size: 174 Copynumber: 3.5 Consensus size: 173
51406226 GAATGTACGA
* * * * * * *
51406236 AACGTTCCAAGAAATAAATAAGTT-AGTTTTAAACTTTGAACATATTTTTAAGTTTGATATATAA
1 AACGTTTCAA-AAAGAAATGAGTTGA-TTTTAAATTTTGAACATCTTTTTAAGTTTGATGTATAT
* * *
51406300 ATTAAACGTTCACTGAAATTTTAAATAAATTTTTCATTTTATTTATGACTATTTAATGCACACAG
64 GTTAAACGTTCACTGAAAATTTAAATAAATTCTTCATTTTATTTATGACTATTTAATGCACACAG
** *
51406365 ATGCCGTTTTTATTATATTTTGTCGTATTTTAAA-T-TA--A-AG
129 ATATCGTTTTTATTATATTTTGTCGTATTTTAAACTAAAGCACAG
*
51406405 --CGTTTCAAAAATGAAATGAGTTGATTTTAAATTTTGAACATCTTTTAAAGTTTGATGTATATG
1 AACGTTTCAAAAA-GAAATGAGTTGATTTTAAATTTTGAACATCTTTTTAAGTTTGATGTATATG
* * *
51406468 TTAAACGTTCACGGAAAATTTAAATAAACTCTTCATTTTATTTATGACTATTTAATGCGCACAGA
65 TTAAACGTTCACTGAAAATTTAAATAAATTCTTCATTTTATTTATGACTATTTAATGCACACAGA
51406533 TATCGTTTTTATTATATTTTGTCGTATTTTAAACTAAAGCACAG
130 TATCGTTTTTATTATATTTTGTCGTATTTTAAACTAAAGCACAG
** * *
51406577 AACGTTTCAAAAACGAAATGAGTAAATTTTCAATTTTGAACATCTTTTTAAGTTTGATGTATGTG
1 AACGTTTCAAAAA-GAAATGAGTTGATTTTAAATTTTGAACATCTTTTTAAGTTTGATGTATATG
*
51406642 TTAAATGTTCACT-AGAAATTTAAATAAATTCTTCATTTTATTTATGACTATTTAATGCACACAG
65 TTAAACGTTCACTGA-AAATTTAAATAAATTCTTCATTTTATTTATGACTATTTAATGCACACAG
*
51406706 ATATCATTTTTATTATATTTTGTCGTATTTTAAACTAAAGCACAG
129 ATATCGTTTTTATTATATTTTGTCGTATTTTAAACTAAAGCACAG
* * * * * *
51406751 AATGTTTCAAAAAAAAATGAATTGATTTTGAATTTTGAACATCTTTTTGAGTTTTGATGTATTTG
1 AACGTTTCAAAAAGAAATGAGTTGATTTTAAATTTTGAACATCTTTTTAAG-TTTGATGTATATG
*
51406816 TT-AATGTTCACTGAAAATTTAAATAAA
65 TTAAACGTTCACTGAAAATTTAAATAAA
51406843 CTTGACAGCA
Statistics
Matches: 390, Mismatches: 36, Indels: 20
0.87 0.08 0.04
Matches are distributed among these distances:
166 3 0.01
167 139 0.36
168 2 0.01
169 1 0.00
171 1 0.00
172 2 0.01
173 56 0.14
174 186 0.48
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.43
Consensus pattern (173 bp):
AACGTTTCAAAAAGAAATGAGTTGATTTTAAATTTTGAACATCTTTTTAAGTTTGATGTATATGT
TAAACGTTCACTGAAAATTTAAATAAATTCTTCATTTTATTTATGACTATTTAATGCACACAGAT
ATCGTTTTTATTATATTTTGTCGTATTTTAAACTAAAGCACAG
Found at i:51407179 original size:201 final size:202
Alignment explanation
Indices: 51406808--51408669 Score: 1666
Period size: 201 Copynumber: 9.4 Consensus size: 202
51406798 TGAGTTTTGA
* * * *
51406808 TGTATTTGTTAATGTTCACTGAAAATTTAAATAAACTTGACAGCAAACAAATTATTCTTTTTATT
1 TGTATATGTTAACGTTCACTGAAAATTTAAATAAATTTGACAACAAACAAATTATTCTTTTTATT
* * * * * *
51406873 TATAACTATTAAAT--ACACATATATCATTTTTGTTATATTTTGTCATGTATTAAATAAAAACAC
66 TATAACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAAGCAC
* * * * * * * *
51406936 GAGATATTTCAAAAAATATATGAGTTAATATGAAAATTTGAATATCTTTCTAAGTTTTGATAAAC
131 GA-ATGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGTTTTGATGAAC
51407001 AAGGCTTT
195 AAGGCTTT
* * * * *
51407009 TGTATATGTTAACATTCACTGGAATTTTAAATAAATTTGGCAACAAACAAATTATTC-TTTT-CT
1 TGTATATGTTAACGTTCACTGAAAATTTAAATAAATTTGACAACAAACAAATTATTCTTTTTATT
* * * * *
51407072 TATAACTATTAAATACATACAGATATTATTTTTATTGTATTTTGTCATGTCTTAAATGAAAGCAC
66 TATAACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAAGCAC
* * **
51407137 GAAGCGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAATATCTTTCTAAGCATTGATGAAC
131 GAA-TGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGTTTTGATGAAC
51407202 AAGGCTTT
195 AAGGCTTT
* * * * * * * *
51407210 TGTATATGTTAATGTTCACCGGAAATTTAAATAAAATTGGCAACAATCAGATTATTCTTATTATT
1 TGTATATGTTAACGTTCACTGAAAATTTAAATAAATTTGACAACAAACAAATTATTCTTTTTATT
* * * * *
51407275 TATAACTATTAAATACACAC-GTGTGTCATTTTTATTGTATTTTGTCGTGTTTCAAATGAAAACA
66 TATAACTATTAAATACACACAG-ATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAAGCA
* * *
51407339 CAGAATGTTTCAAGAAATATACGAGTTAATTTTAAATTTTGAACATCTTCCTAAGTTTT--T---
130 C-GAATGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGTTTTGATGAA
51407399 --A------
194 CAAGGCTTT
* * * * *
51407400 TGTATATGTTAACATTCATTGAAAATTTAAATGAATTTGACAACAAA-TAATTTTTCTTTTTATT
1 TGTATATGTTAACGTTCACTGAAAATTTAAATAAATTTGACAACAAACAAATTATTCTTTTTATT
* * * * *
51407464 TATAATTATTAAAT--ACACATATATCATTTTTGTTACATTTTGTCGTGTTTTAAATGAAAGAAC
66 TATAACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAAGCAC
* ** *** * **
51407527 AAAACCTTTCAAGAAAGATATTG-GTT--TTTTTTTTTTTGAACATTTTTCTAAACTTTGATGAA
131 -GAATGTTTCAAGAAAGATA-TGAGTTAATTTTAAATTTTGAACATCTTTCTAAGTTTTGATGAA
* **
51407589 TAAAACTTT
194 CAAGGCTTT
* * * * *
51407598 TGTATATGTTAACCTTCACT-AAAAGTTTAAATAAATTTGGCAACAAATAGATTCTTCTTCTTTA
1 TGTATATGTTAACGTTCACTGAAAA-TTTAAATAAATTTGACAACAAACAAATTATTCTT-TTTA
* * *
51407662 TTTATAGCTATTAAATACACATAAATATCATTTTTATTATATTTTGTCGTGTTTTAAATG-AAGA
64 TTTATAACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAAG-
* * * *
51407726 CACAAAATGTTTTAAGAAATATATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTTTGATG
128 CAC-GAATGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGTTTTGATG
*
51407791 AACGAGGCTTT
192 AACAAGGCTTT
* * * * **
51407802 TGCATATGTTAATGTTCACTGAAAATTTAAATAAAATTGGCAACAAACAGGTTATTCTTTTTATT
1 TGTATATGTTAACGTTCACTGAAAATTTAAATAAATTTGACAACAAACAAATTATTCTTTTTATT
* * *
51407867 TATAACTATTAAATACACACATATATCATTTTTATTATATTTTGTCGTGTTTTAAGTGAAAACA-
66 TATAACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAAGCAC
* *
51407931 GAAAGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTCCTAAGTTTT--T-----
131 GAATGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGTTTTGATGAACA
51407989 A------
196 AGGCTTT
* * * *
51407990 TGTATGTGTTAACTTTAACT-AAAATTTTAAATAAATTTGACAACAAACAAATTCTTCTTTTTAT
1 TGTATATGTTAACGTTCACTGAAAA-TTTAAATAAATTTGACAACAAACAAATTATTCTTTTTAT
* * * * *
51408054 TTATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTGTCATGTTTTAAATGAGAGAA
65 TTATAACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAAGCA
* * * * *
51408119 CGAAACGTTTCAATAAGGATATGAGTTGATATTTTAAAATTTGAACATCTTTTTAAGTTTTGATG
130 CG-AATGTTTCAAGAAAGATATGAGTT-A-ATTTTAAATTTTGAACATCTTTCTAAGTTTTGATG
* *
51408184 AATAAGACTTT
192 AACAAGGCTTT
* * * * * * *
51408195 TATATATGCTAGCGTTCACTGAAAATTTAAATAAAATTGACAACAAATAGATTCTTCTTTTTTAT
1 TGTATATGTTAACGTTCACTGAAAATTTAAATAAATTTGACAACAAACAAATTATTC-TTTTTAT
* * * * * *
51408260 TTATAACTATTGAATACACTCGGGTATCATTTTTATTGTCTTTTGTCGTGTTTTAAATGAAAGCA
65 TTATAACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAAGCA
* * *
51408325 CAGAATGTTTCAAAAAAGATATGAGTTAATTTTAAATTTTGAACATCTTCCCAAGTTTT--T---
130 C-GAATGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGTTTTGATGAA
51408385 --A------
194 CAAGGCTTT
* * *
51408386 TGTATATTTTAACGTTCACT-AAAATTTTAAATAAAATTGACAACAAACAAATTCTTCTTTTTAT
1 TGTATATGTTAACGTTCACTGAAAA-TTTAAATAAATTTGACAACAAACAAATTATTCTTTTTAT
* * * * * * * *
51408450 TTATAACTCTTAAAT--ACACATATATCATTTTCATTGTATGTTAGTTGTGTTTTAAATGAATGT
65 TTATAACTATTAAATACACACAGATATCATTTTTATTATAT-TTTGTCGTGTTTTAAATGAAAGC
* * * * * * * * * *
51408513 ACCAAATG-ATCTAAGAATGAAATAAATTAGTTATAAATTTTGTACAAAT-TTTTTAAGATTTTG
129 A-CGAATGTTTC-AAGAAAGATATGAGTTAATTTTAAATTTTG-A-ACATCTTTCTAAG-TTTTG
* * *
51408576 AAGAATAAGACTTT
189 ATGAACAAGGCTTT
* * * * * * *
51408590 TGTATATGTTAACATCCA-TTATAAATTTAAATAAATTCGACAACAATCAAAATATTCATTTTAT
1 TGTATATGTTAACGTTCACTGA-AAATTTAAATAAATTTGACAACAAACAAATTATTCTTTTTAT
*
51408654 TAATAACTATTAAATA
65 TTATAACTATTAAATA
51408670 TATACAAATT
Statistics
Matches: 1359, Mismatches: 225, Indels: 150
0.78 0.13 0.09
Matches are distributed among these distances:
185 23 0.02
187 63 0.05
188 127 0.09
189 74 0.05
190 90 0.07
191 54 0.04
192 29 0.02
194 2 0.00
196 1 0.00
197 5 0.00
198 39 0.03
199 25 0.02
200 23 0.02
201 258 0.19
202 64 0.05
203 166 0.12
204 175 0.13
205 51 0.04
206 89 0.07
207 1 0.00
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.42
Consensus pattern (202 bp):
TGTATATGTTAACGTTCACTGAAAATTTAAATAAATTTGACAACAAACAAATTATTCTTTTTATT
TATAACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAAGCAC
GAATGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGTTTTGATGAACA
AGGCTTT
Found at i:51407802 original size:592 final size:592
Alignment explanation
Indices: 51406679--51408373 Score: 2119
Period size: 592 Copynumber: 2.9 Consensus size: 592
51406669 ATTCTTCATT
* * * * *
51406679 TTATTTATGACTATTTAATGCACACAGATATCATTTTTATTATATTTTGTCGTATTTTAAACT-A
1 TTATTTATAACTATTAAATACACACATATATCATTTTTATTATATTTTGTCGTGTTTTAAA-TGA
* * * * * ** * *
51406743 AAGCACAGAATGTTTCAA-AAAAAAATGAATTGATTTTGAATTTTGAACATCTTTTTGAGTTTTG
65 AAACACAGAATGTTTCAAGAAAAATATGAGTTAATTTTAAATTTTGAACATCTTCCTAAGTTTTT
* ** * *
51406807 ATGTATTTGTTAATGTTCACTGAAAATTTAAATAAACTTGACAGCAAACAAATTATTCTTTTTAT
130 ATGTATATGTTAACATTCACTGAAAATTTAAATAAATTTGACAACAAACAAATTATTCTTTTTAT
*
51406872 TTATAACTATTAAATACACATATATCATTTTTGTTATATTTTGTCATGTATTAAAT-AAA-AACA
195 TTATAACTATTAAATACACATATATCATTTTTGTTATATTTTGTCATGTTTTAAATGAAAGAACA
* * * ** * * *
51406935 CGAGATATTTCAAAAA-ATATATGAGTTAATATGAAAATTTGAATATCTTTCTAAGTTTTGATAA
260 --AAACATTTCAAAAAGATAT-TGAGTT-ATTTTTAAATTTGAACATTTTTCTAAGTTTTGATGA
* * * * * * *
51406999 ACAAGGCTTTTGTATATGTTAACATTCACTGGAATTTTAAATAAATTTGGCAACAAACAAATTAT
321 ATAAGACTTTTGTATATGTTAACATTCACT-AAAATTTAAATAAATTTGGCAACAAATAGATTCT
* * * * * *
51407064 TC-TTTT-CTTATAACTATTAAATACATACAGATATTATTTTTATTGTATTTTGTCATGTCTTAA
385 TCTTTTTATTTATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTGTCGTGTTTTAA
* ** *
51407127 ATGAAAGCACGAAGCGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAATATCTTTCTAAGC
450 ATGAAAGCACAAAATGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGC
* * *
51407192 ATTGATGAACAAGGCTTTTGTATATGTTAATGTTCACCGGAAATTTAAATAAAATTGGCAACAAT
515 ATTGATGAACAAGGCTTTTGCATATGTTAATGTTCACCGAAAATTTAAATAAAATTGGCAACAAA
51407257 CAGATTATTCTTA
580 CAGATTATTCTTA
* * * * *
51407270 TTATTTATAACTATTAAATACACACGTGTGTCATTTTTATTGTATTTTGTCGTGTTTCAAATGAA
1 TTATTTATAACTATTAAATACACACATATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAA
* *
51407335 AACACAGAATGTTTCAAGAAATATACGAGTTAATTTTAAATTTTGAACATCTTCCTAAGTTTTTA
66 AACACAGAATGTTTCAAGAAAAATATGAGTTAATTTTAAATTTTGAACATCTTCCTAAGTTTTTA
* * * *
51407400 TGTATATGTTAACATTCATTGAAAATTTAAATGAATTTGACAACAAA-TAATTTTTCTTTTTATT
131 TGTATATGTTAACATTCACTGAAAATTTAAATAAATTTGACAACAAACAAATTATTCTTTTTATT
* * *
51407464 TATAATTATTAAATACACATATATCATTTTTGTTACATTTTGTCGTGTTTTAAATGAAAGAACAA
196 TATAACTATTAAATACACATATATCATTTTTGTTATATTTTGTCATGTTTTAAATGAAAGAACAA
* *** **
51407529 AACCTTTCAAGAAAGATATTG-GTT-TTTTTTTTTTTGAACATTTTTCTAAACTTTGATGAATAA
261 AACATTTCAA-AAAGATATTGAGTTATTTTTAAATTTGAACATTTTTCTAAGTTTTGATGAATAA
* *
51407592 AACTTTTGTATATGTTAACCTTCACTAAAAGTTTAAATAAATTTGGCAACAAATAGATTCTTCTT
325 GACTTTTGTATATGTTAACATTCACTAAAA-TTTAAATAAATTTGGCAACAAATAGATTCTTCTT
* * *
51407657 CTTTATTTATAGCTATTAAATACACATAAATATCATTTTTATTATATTTTGTCGTGTTTTAAATG
389 -TTTATTTATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTGTCGTGTTTTAAATG
* * * **
51407722 -AAGACACAAAATGTTTTAAGAAATATATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTT
453 AAAG-CACAAAATGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGCAT
* *
51407786 TGATGAACGAGGCTTTTGCATATGTTAATGTTCACTGAAAATTTAAATAAAATTGGCAACAAACA
517 TGATGAACAAGGCTTTTGCATATGTTAATGTTCACCGAAAATTTAAATAAAATTGGCAACAAACA
* *
51407851 GGTTATTCTTT
582 GATTATTCTTA
*
51407862 TTATTTATAACTATTAAATACACACATATATCATTTTTATTATATTTTGTCGTGTTTTAAGTG-A
1 TTATTTATAACTATTAAATACACACATATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAA
* *
51407926 AA-ACAGAAAGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTCCTAAGTTTTTA
66 AACACAGAATGTTTCAAGAAAAATATGAGTTAATTTTAAATTTTGAACATCTTCCTAAGTTTTTA
* * * *
51407990 TGTATGTGTTAACTTTAACT-AAAATTTTAAATAAATTTGACAACAAACAAATTCTTCTTTTTAT
131 TGTATATGTTAACATTCACTGAAAA-TTTAAATAAATTTGACAACAAACAAATTATTCTTTTTAT
* * *
51408054 TTATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTGTCATGTTTTAAATGAGAGAA
195 TTATAACTATTAAATACACAT--ATATCATTTTTGTTATATTTTGTCATGTTTTAAATGAAAGAA
* * *
51408119 CGAAACGTTTCAATAAGGATA-TGAGTTGATATTTTAAAATTTGAACATCTTTT-TAAGTTTTGA
258 CAAAACATTTCAA-AAAGATATTGAGTT-AT-TTTT-AAATTTGAACAT-TTTTCTAAGTTTTGA
* * * * * *
51408182 TGAATAAGACTTTTATATATGCTAGCGTTCACTGAAAATTTAAATAAAATTGACAACAAATAGAT
318 TGAATAAGACTTTTGTATATGTTAACATTCACT-AAAATTTAAATAAATTTGGCAACAAATAGAT
* * * *
51408247 TCTTCTTTTTTATTTATAACTATTGAATACAC-TCGGGTATCATTTTTATTGTCTTTTGTCGTGT
382 TCTTC-TTTTTATTTATAACTATTAAATACACAT-AGATATCATTTTTATTGTATTTTGTCGTGT
* *
51408311 TTTAAATGAAAGCACAGAATGTTTCAAAAAAGATATGAGTTAATTTTAAATTTTGAACATCTT
445 TTTAAATGAAAGCACAAAATGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTT
51408374 CCCAAGTTTT
Statistics
Matches: 948, Mismatches: 131, Indels: 44
0.84 0.12 0.04
Matches are distributed among these distances:
588 2 0.00
589 83 0.09
590 98 0.10
591 189 0.20
592 315 0.33
593 65 0.07
595 1 0.00
596 5 0.01
597 177 0.19
598 13 0.01
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.42
Consensus pattern (592 bp):
TTATTTATAACTATTAAATACACACATATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAA
AACACAGAATGTTTCAAGAAAAATATGAGTTAATTTTAAATTTTGAACATCTTCCTAAGTTTTTA
TGTATATGTTAACATTCACTGAAAATTTAAATAAATTTGACAACAAACAAATTATTCTTTTTATT
TATAACTATTAAATACACATATATCATTTTTGTTATATTTTGTCATGTTTTAAATGAAAGAACAA
AACATTTCAAAAAGATATTGAGTTATTTTTAAATTTGAACATTTTTCTAAGTTTTGATGAATAAG
ACTTTTGTATATGTTAACATTCACTAAAATTTAAATAAATTTGGCAACAAATAGATTCTTCTTTT
TATTTATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTGTCGTGTTTTAAATGAAA
GCACAAAATGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTCTAAGCATTGAT
GAACAAGGCTTTTGCATATGTTAATGTTCACCGAAAATTTAAATAAAATTGGCAACAAACAGATT
ATTCTTA
Found at i:51407833 original size:204 final size:202
Alignment explanation
Indices: 51407400--51408669 Score: 1181
Period size: 204 Copynumber: 6.4 Consensus size: 202
51407390 TAAGTTTTTA
* * * *
51407400 TGTATATGTTAACATTCATTGAAAATTTAAATGAATTTGACAACAAATA-ATTTTTCTTTTTATT
1 TGTATATGTTAACGTTCACTGAAAATTTAAATAAATTTGACAACAAATAGATTCTTCTTTTTATT
* * *
51407464 TATAATTATTAAATACACAT--ATATCATTTTTGTTACATTTTGTCGTGTTTTAAATGAAAGAAC
66 TATAACTATTAAATACACATAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATG-AAGAAC
* *** **
51407527 AAAACCTTTCAAGAAAGATATTG-GTT--TTTTTTTTTTTGAACAT-TTTTCTAAACTTTGATGA
130 AAAACGTTTCAAGAAAGATA-TGAGTTAATTTTAAATTTTGAACATCTTTT-TAAGTTTTGATGA
*
51407588 ATAAAACTTT
193 ATAAGACTTT
* *
51407598 TGTATATGTTAACCTTCACT-AAAAGTTTAAATAAATTTGGCAACAAATAGATTCTTCTTCTTTA
1 TGTATATGTTAACGTTCACTGAAAA-TTTAAATAAATTTGACAACAAATAGATTCTTCTT-TTTA
* *
51407662 TTTATAGCTATTAAATACACATAAATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAGAC
64 TTTATAACTATTAAATACACATAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAGA-
* * *
51407727 ACAAAATGTTTTAAGAAATATATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTTTGATGA
128 ACAAAACGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTTTGATGA
** *
51407792 ACGAGGCTTT
193 ATAAGACTTT
* * * * * * *
51407802 TGCATATGTTAATGTTCACTGAAAATTTAAATAAAATTGGCAACAAACAGGTTATTCTTTTTATT
1 TGTATATGTTAACGTTCACTGAAAATTTAAATAAATTTGACAACAAATAGATTCTTCTTTTTATT
* * *
51407867 TATAACTATTAAATACACACATATATCATTTTTATTATATTTTGTCGTGTTTTAAGTGAA-AACA
66 TATAACTATTAAATACACATAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAGAACA
**
51407931 GAAA-GTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTCCTAAG-TTT--T---T
131 -AAACGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTTTGATGAAT
51407989 ---A----
195 AAGACTTT
* * * * *
51407990 TGTATGTGTTAACTTTAACT-AAAATTTTAAATAAATTTGACAACAAACAAATTCTTCTTTTTAT
1 TGTATATGTTAACGTTCACTGAAAA-TTTAAATAAATTTGACAACAAATAGATTCTTCTTTTTAT
* *
51408054 TTATAACTATTAAATACACATAGATATCATTTTTATTGTATTTTGTCATGTTTTAAATGAGAGAA
65 TTATAACTATTAAATACACATAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGA-AGAA
* * * *
51408119 CGAAACGTTTCAATAAGGATATGAGTTGATATTTTAAAATTTGAACATCTTTTTAAGTTTTGATG
129 CAAAACGTTTCAAGAAAGATATGAGTT-A-ATTTTAAATTTTGAACATCTTTTTAAGTTTTGATG
51408184 AATAAGACTTT
192 AATAAGACTTT
* * * *
51408195 TATATATGCTAGCGTTCACTGAAAATTTAAATAAAATTGACAACAAATAGATTCTTCTTTTTTAT
1 TGTATATGTTAACGTTCACTGAAAATTTAAATAAATTTGACAACAAATAGATTCTTC-TTTTTAT
* * * * * *
51408260 TTATAACTATTGAATACAC-TCGGGTATCATTTTTATTGTCTTTTGTCGTGTTTTAAATGAAAGC
65 TTATAACTATTAAATACACAT-AGATATCATTTTTATTATATTTTGTCGTGTTTTAAATG-AAGA
* * * ***
51408324 ACAGAATGTTTCAAAAAAGATATGAGTTAATTTTAAATTTTGAACATCTTCCCAAG-TTT--T--
128 ACAAAACGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTTTGATGA
51408384 -T---A----
193 ATAAGACTTT
* * * *
51408386 TGTATATTTTAACGTTCACT-AAAATTTTAAATAAAATTGACAACAAACAAATTCTTCTTTTTAT
1 TGTATATGTTAACGTTCACTGAAAA-TTTAAATAAATTTGACAACAAATAGATTCTTCTTTTTAT
* * * * * *
51408450 TTATAACTCTTAAATACACAT--ATATCATTTTCATTGTATGTTAGTTGTGTTTTAAATGAATGT
65 TTATAACTATTAAATACACATAGATATCATTTTTATTATAT-TTTGTCGTGTTTTAAATGAA-GA
* * * * * * * * * *
51408513 ACCAAATG-ATCTAAGAATGAAATAAATTAGTTATAAATTTTGTACAAAT-TTTTTAAGATTTTG
128 ACAAAACGTTTC-AAGAAAGATATGAGTTAATTTTAAATTTTG-A-ACATCTTTTTAAG-TTTTG
*
51408576 AAGAATAAGACTTT
189 ATGAATAAGACTTT
* * * * * * * *
51408590 TGTATATGTTAACATCCA-TTATAAATTTAAATAAATTCGACAAC-AATCAAAATATTCATTTTA
1 TGTATATGTTAACGTTCACTGA-AAATTTAAATAAATTTGACAACAAAT-AGATTCTTCTTTTTA
*
51408653 TTAATAACTATTAAATA
64 TTTATAACTATTAAATA
51408670 TATACAAATT
Statistics
Matches: 889, Mismatches: 124, Indels: 112
0.79 0.11 0.10
Matches are distributed among these distances:
187 4 0.00
188 123 0.14
189 50 0.06
190 56 0.06
191 51 0.06
192 27 0.03
193 3 0.00
195 2 0.00
197 5 0.01
198 43 0.05
199 8 0.01
200 28 0.03
201 56 0.06
202 59 0.07
203 68 0.08
204 161 0.18
205 56 0.06
206 88 0.10
207 1 0.00
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (202 bp):
TGTATATGTTAACGTTCACTGAAAATTTAAATAAATTTGACAACAAATAGATTCTTCTTTTTATT
TATAACTATTAAATACACATAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAGAACA
AAACGTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTTTGATGAATA
AGACTTT
Found at i:51408414 original size:396 final size:390
Alignment explanation
Indices: 51407403--51408509 Score: 1305
Period size: 396 Copynumber: 2.8 Consensus size: 390
51407393 GTTTTTATGT
* * * * * * *
51407403 ATATGTTAACATTCATTGAAAATTTAAATGAATTTGACAACAAATA-ATTTTTCTTTTTATTTAT
1 ATATGCTAACGTTCACTGAAAATTTAAATAAAATTGACAACAAACAGATTATTCTTTTTATTTAT
* * * *
51407467 AATTATTAAAT--ACACATATATCATTTTTGTTACATTTTGTCGTGTTTTAAATGAAAGAACA-A
66 AACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATG-AA-AACAGA
* * *** * ** *
51407529 AACCTTTCAAGAAAGATATTG-GTT--TTTTTTTTTTTGAACATTTTTCTAAACTTTGATGAATA
129 AA-GTTTCAAAAAAGATA-TGAGTTAATTTTAAATTTTGAACA-TCTTCCCAAGTTT--T---T-
* * * *
51407591 AAACTTTTGTATATGTTAACCTTCACTAAAAGTTTAAATAAATTTGGCAACAAATAGATTCTTCT
185 --A----TGTATATGTTAACCTTCACTAAAATTTTAAATAAATTTGACAACAAACAAATTCTTCT
* *
51407656 TCTTTATTTATAGCTATTAAATACACATAAATATCATTTTTATTATATTTTGTCGTGTTTTAAAT
244 T-TTTATTTATAACTATTAAATACACAT-AATATCATTTTTATTGTATTTTGTCGTGTTTTAAAT
* * * *
51407721 GAAGACACAAAATGTTTTAAGAAATATATGAGTTAATTTTAAATTTTGAACATCTTTTTAAGTTT
307 GAAGACACAAAACGTTTCAAGAAAGATATGAGTTAATTTTAAAATTTGAACATCTTTTTAAGTTT
* * *
51407786 TGATGAACGAGGCTTTTGC
372 TGATGAACAAGACTTTTAC
* * * *
51407805 ATATGTTAATGTTCACTGAAAATTTAAATAAAATTGGCAACAAACAGGTTATTCTTTTTATTTAT
1 ATATGCTAACGTTCACTGAAAATTTAAATAAAATTGACAACAAACAGATTATTCTTTTTATTTAT
* *
51407870 AACTATTAAATACACACATATATCATTTTTATTATATTTTGTCGTGTTTTAAGTGAAAACAGAAA
66 AACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAAACAGAAA
* * *
51407935 GTTTCAAGAAAGATATGAGTTAATTTTAAATTTTGAACATCTTCCTAAGTTTTTATGTATGTGTT
131 GTTTCAAAAAAGATATGAGTTAATTTTAAATTTTGAACATCTTCCCAAGTTTTTATGTATATGTT
* *
51408000 AACTTTAACTAAAATTTTAAATAAATTTGACAACAAACAAATTCTTCTTTTTATTTATAACTATT
196 AACCTTCACTAAAATTTTAAATAAATTTGACAACAAACAAATTCTTCTTTTTATTTATAACTATT
* *
51408065 AAATACACATAGATATCATTTTTATTGTATTTTGTCATGTTTTAAATGAGAGA-ACGAAACGTTT
261 AAATACACATA-ATATCATTTTTATTGTATTTTGTCGTGTTTTAAATGA-AGACACAAAACGTTT
* * *
51408129 CAATAAGGATATGAGTTGATATTTTAAAATTTGAACATCTTTTTAAGTTTTGATGAATAAGACTT
324 CAAGAAAGATATGAGTT-A-ATTTTAAAATTTGAACATCTTTTTAAGTTTTGATGAACAAGACTT
*
51408194 TTAT
387 TTAC
* * *
51408198 ATATGCTAGCGTTCACTGAAAATTTAAATAAAATTGACAACAAATAGATTCTTCTTTTTTATTTA
1 ATATGCTAACGTTCACTGAAAATTTAAATAAAATTGACAACAAACAGATTATTC-TTTTTATTTA
* * * * * *
51408263 TAACTATTGAATACACTCGGGTATCATTTTTATTGTCTTTTGTCGTGTTTTAAATGAAAGCACAG
65 TAACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAA--ACAG
*
51408328 AATGTTTCAAAAAAGATATGAGTTAATTTTAAATTTTGAACATCTTCCCAAGTTTTTATGTATAT
128 AAAGTTTCAAAAAAGATATGAGTTAATTTTAAATTTTGAACATCTTCCCAAGTTTTTATGTATAT
* * *
51408393 TTTAACGTTCACTAAAATTTTAAATAAAATTGACAACAAACAAATTCTTCTTTTTATTTATAACT
193 GTTAACCTTCACTAAAATTTTAAATAAATTTGACAACAAACAAATTCTTCTTTTTATTTATAACT
* * * *
51408458 CTTAAATACACAT-ATATCATTTTCATTGTATGTTAGTTGTGTTTTAAATGAA
258 ATTAAATACACATAATATCATTTTTATTGTAT-TTTGTCGTGTTTTAAATGAA
51408510 TGTACCAAAT
Statistics
Matches: 619, Mismatches: 71, Indels: 38
0.85 0.10 0.05
Matches are distributed among these distances:
390 1 0.00
391 82 0.13
392 56 0.09
393 90 0.15
394 79 0.13
395 16 0.03
396 139 0.22
399 1 0.00
402 42 0.07
403 47 0.08
404 14 0.02
405 52 0.08
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.43
Consensus pattern (390 bp):
ATATGCTAACGTTCACTGAAAATTTAAATAAAATTGACAACAAACAGATTATTCTTTTTATTTAT
AACTATTAAATACACACAGATATCATTTTTATTATATTTTGTCGTGTTTTAAATGAAAACAGAAA
GTTTCAAAAAAGATATGAGTTAATTTTAAATTTTGAACATCTTCCCAAGTTTTTATGTATATGTT
AACCTTCACTAAAATTTTAAATAAATTTGACAACAAACAAATTCTTCTTTTTATTTATAACTATT
AAATACACATAATATCATTTTTATTGTATTTTGTCGTGTTTTAAATGAAGACACAAAACGTTTCA
AGAAAGATATGAGTTAATTTTAAAATTTGAACATCTTTTTAAGTTTTGATGAACAAGACTTTTAC
Found at i:51410220 original size:18 final size:19
Alignment explanation
Indices: 51410184--51410221 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
51410174 GCTTTTCAAA
51410184 AAATAAAAGTAATCAATATT
1 AAATAAAAG-AATCAATATT
*
51410204 AAATAAAA-AATCTATATT
1 AAATAAAAGAATCAATATT
51410222 TTATAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
20 8 0.47
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.32
Consensus pattern (19 bp):
AAATAAAAGAATCAATATT
Found at i:51411558 original size:18 final size:19
Alignment explanation
Indices: 51411537--51411574 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
51411527 CTTGTTTAGA
*
51411537 ATTTTTTATCGT-ATTAAT
1 ATTTTTTATAGTAATTAAT
51411555 A-TTTTTATAGTAATTAAT
1 ATTTTTTATAGTAATTAAT
51411573 AT
1 AT
51411575 ATTTAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 3
0.81 0.05 0.14
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (19 bp):
ATTTTTTATAGTAATTAAT
Found at i:51411561 original size:17 final size:18
Alignment explanation
Indices: 51411539--51411579 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
51411529 TGTTTAGAAT
*
51411539 TTTTTATCGT-ATTAATA
1 TTTTTATAGTAATTAATA
51411556 TTTTTATAGTAATTAATA
1 TTTTTATAGTAATTAATA
*
51411574 TATTTA
1 TTTTTA
51411580 AAAAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (18 bp):
TTTTTATAGTAATTAATA
Found at i:51412140 original size:22 final size:22
Alignment explanation
Indices: 51412115--51412157 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
51412105 TATCGAAACA
51412115 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
51412137 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
51412158 AACAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:51413520 original size:46 final size:46
Alignment explanation
Indices: 51413446--51413535 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 46
51413436 TTGTTGGTGC
* * * *
51413446 GTGGGGATAAAATGAATTTATGAGAAATTAATGAAAGCTTCAAAGT
1 GTGGAGATAAAATAAAATTATGAGAAATTAACGAAAGCTTCAAAGT
*
51413492 GTGGAGATAAAATAAAATTATGATAAATTAACGAAAGCTTCAAA
1 GTGGAGATAAAATAAAATTATGAGAAATTAACGAAAGCTTCAAA
51413536 ACGTGTATCA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.48, C:0.06, G:0.20, T:0.27
Consensus pattern (46 bp):
GTGGAGATAAAATAAAATTATGAGAAATTAACGAAAGCTTCAAAGT
Found at i:51417486 original size:64 final size:64
Alignment explanation
Indices: 51417407--51417536 Score: 260
Period size: 64 Copynumber: 2.0 Consensus size: 64
51417397 TGAAAGAAGT
51417407 CTTTACAATTTTGTTTCAATCATTTTGATAATCCCACATGGTGGGATAGTGGCTCAAAACTGAC
1 CTTTACAATTTTGTTTCAATCATTTTGATAATCCCACATGGTGGGATAGTGGCTCAAAACTGAC
51417471 CTTTACAATTTTGTTTCAATCATTTTGATAATCCCACATGGTGGGATAGTGGCTCAAAACTGAC
1 CTTTACAATTTTGTTTCAATCATTTTGATAATCCCACATGGTGGGATAGTGGCTCAAAACTGAC
51417535 CT
1 CT
51417537 GTCCTTATAT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (64 bp):
CTTTACAATTTTGTTTCAATCATTTTGATAATCCCACATGGTGGGATAGTGGCTCAAAACTGAC
Found at i:51421017 original size:16 final size:16
Alignment explanation
Indices: 51420996--51421041 Score: 83
Period size: 16 Copynumber: 2.9 Consensus size: 16
51420986 GCTGTATTGA
51420996 AATAGAGGCGTAATGG
1 AATAGAGGCGTAATGG
*
51421012 AATAGAGGTGTAATGG
1 AATAGAGGCGTAATGG
51421028 AATAGAGGCGTAAT
1 AATAGAGGCGTAAT
51421042 AGTAAATCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.39, C:0.04, G:0.35, T:0.22
Consensus pattern (16 bp):
AATAGAGGCGTAATGG
Found at i:51421071 original size:45 final size:44
Alignment explanation
Indices: 51421020--51421110 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 44
51421010 GGAATAGAGG
*
51421020 TGTAATGGAATAGAGGCGTAATAGTAAATCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAGACGTAATAGT-AATC-ATGTGTTTGGTTGAA
*
51421065 TGTAATGGAATAGAGACGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGACGTAATAGTAATCATGTGTTTGGTTGAA
51421109 TG
1 TG
51421111 GAATATAGGA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 18 0.42
45 24 0.56
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGACGTAATAGTAATCATGTGTTTGGTTGAA
Found at i:51421125 original size:39 final size:40
Alignment explanation
Indices: 51421023--51421127 Score: 106
Period size: 44 Copynumber: 2.5 Consensus size: 40
51421013 ATAGAGGTGT
* *
51421023 AATGGAATAGAGGCGTAATAGTAAATCAATTGTTTGGTTG
1 AATGGAATATAGGAGTAATAGTAAATCAATTGTTTGGTTG
* *
51421063 AATGTAATGGAATAGAGACGTAATAGT-AATC-TTGTGTTTGGTTG
1 AATGGAAT---ATAG-GA-GTAATAGTAAATCAAT-TGTTTGGTTG
51421107 AATGGAATATAGGAGTAATAG
1 AATGGAATATAGGAGTAATAG
51421128 CATAATAGAA
Statistics
Matches: 54, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
39 7 0.13
40 9 0.17
41 4 0.07
43 4 0.07
44 22 0.41
45 8 0.15
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (40 bp):
AATGGAATATAGGAGTAATAGTAAATCAATTGTTTGGTTG
Found at i:51421423 original size:14 final size:15
Alignment explanation
Indices: 51421374--51421425 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
51421364 ATAAAATATA
51421374 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
51421389 TATTAAATATATTAT
1 AATTAAATATATTAT
51421404 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
51421417 AATTTAATA
1 AATTAAATA
51421426 AAATTATCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:51421471 original size:120 final size:121
Alignment explanation
Indices: 51421258--51421790 Score: 912
Period size: 120 Copynumber: 4.4 Consensus size: 121
51421248 ATCATATTTA
* * *
51421258 AACATAATTATTATTAAATATAATATAATTGAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
51421323 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* * *
51421378 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATCAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
51421443 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
*
51421498 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAACAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
51421563 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* *
51421619 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
51421683 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* *
51421739 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
51421791 TAAAATAATT
Statistics
Matches: 399, Mismatches: 13, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
120 397 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
Found at i:51421837 original size:101 final size:93
Alignment explanation
Indices: 51421731--51422013 Score: 333
Period size: 91 Copynumber: 3.0 Consensus size: 93
51421721 ACTATAAAAG
* * * *
51421731 ATAATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATTTAAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTT---
* *
51421795 ATAATTATAACTAATAAATTTTCTTATATGAATTTGT
62 -T--CT-TAA-TAATAAATTTTCTTATATGAATTTAT
* *
51421832 ATAATTTAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCATAAAA--TTCTT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
*
51421895 GATAATAAATTTTCTTATATGAATTTAT
66 AATAATAAATTTTCTTATATGAATTTAT
* *
51421923 ACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAA--TTCTT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
*
51421986 AATAATAAAATGTTCTTATATGAATTTA
66 AATAAT-AAATTTTCTTATATGAATTTA
51422014 CTAAAATCAA
Statistics
Matches: 165, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
91 89 0.54
92 22 0.13
93 1 0.01
95 1 0.01
99 1 0.01
100 3 0.02
101 48 0.29
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (93 bp):
ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
AATAATAAATTTTCTTATATGAATTTAT
Found at i:51421841 original size:47 final size:46
Alignment explanation
Indices: 51421772--51421939 Score: 143
Period size: 47 Copynumber: 3.7 Consensus size: 46
51421762 TTAATTAAAA
*
51421772 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAAATTTTCT
1 TATATGAATTT-ATATAATTTAAAATAATTATAA-TAATAAATTTTCT
* * **
51421819 TATATGAATTTGTATAATTTAAAATAATTATTATTACATATAA-TTTAA
1 TATATGAATTTATATAATTTAAAATAATTA-TAATA-ATA-AATTTTCT
* * *
51421867 TA-AT-AA--TATATAATTTCATAA-AATTCTTGATAATAAATTTTCT
1 TATATGAATTTATATAATTT-AAAATAATT-ATAATAATAAATTTTCT
*
51421910 TATATGAATTTATACAATTTAAAATAATTA
1 TATATGAATTTATATAATTTAAAATAATTA
51421940 ATATTAAATA
Statistics
Matches: 94, Mismatches: 15, Indels: 25
0.70 0.11 0.19
Matches are distributed among these distances:
42 2 0.02
43 8 0.09
44 18 0.19
45 5 0.05
46 5 0.05
47 40 0.43
48 14 0.15
49 2 0.02
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTTTCT
Found at i:51421861 original size:26 final size:28
Alignment explanation
Indices: 51421831--51421891 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
51421821 TATGAATTTG
*
51421831 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
51421857 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
51421885 TAAAATT
1 TATAATT
51421892 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:51421901 original size:91 final size:91
Alignment explanation
Indices: 51421806--51422013 Score: 344
Period size: 91 Copynumber: 2.3 Consensus size: 91
51421796 TAATTATAAC
* * * *
51421806 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
51421871 AATATATAATTTCATAAAATTCTTGA
66 AATATATAATTTCATAAAATTCTTAA
51421897 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
51421962 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
*
51421988 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAATTTTCTTATATGAATTTA
51422014 CTAAAATCAA
Statistics
Matches: 109, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
91 89 0.82
92 20 0.18
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.46
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:51421973 original size:44 final size:43
Alignment explanation
Indices: 51421831--51421973 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 43
51421821 TATGAATTTG
* *
51421831 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * * *
51421875 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
51421922 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
51421966 TATAATTT
1 TATAATTT
51421974 CATAAAATTC
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
43 3 0.04
44 32 0.43
45 7 0.09
46 7 0.09
47 22 0.30
48 3 0.04
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:51421988 original size:47 final size:47
Alignment explanation
Indices: 51421856--51421994 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
51421846 TTATTATTAC
* *
51421856 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
51421903 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
51421947 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
51421994 A
1 A
51421995 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:51425100 original size:13 final size:13
Alignment explanation
Indices: 51425082--51425107 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51425072 TGCTTTTGAG
51425082 TTCAAAAATAATT
1 TTCAAAAATAATT
51425095 TTCAAAAATAATT
1 TTCAAAAATAATT
51425108 CTGATTTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
TTCAAAAATAATT
Found at i:51426951 original size:30 final size:30
Alignment explanation
Indices: 51426915--51426981 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
51426905 CGATTAACTC
*
51426915 AAACAAATAATGCAATATAGGCAAGAACCG
1 AAACAAATAATGCAATACAGGCAAGAACCG
51426945 AAACAAATAATGCAATACAGGCAAGAACCG
1 AAACAAATAATGCAATACAGGCAAGAACCG
51426975 AAACAAA
1 AAACAAA
51426982 CTATTTAGCC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.57, C:0.18, G:0.15, T:0.10
Consensus pattern (30 bp):
AAACAAATAATGCAATACAGGCAAGAACCG
Found at i:51428766 original size:133 final size:134
Alignment explanation
Indices: 51428384--51428743 Score: 444
Period size: 133 Copynumber: 2.7 Consensus size: 134
51428374 TCATTCAAAG
* * * * * * *
51428384 TTTTTCCTCAAATTAGATATCTTTACCGGTGTTTCTCCA-ATAACCCCACTATATCCCAATATTT
1 TTTTTCCTCAAATTAGTTATCTTTACCGGCGTTTCT-CAGAAAACGCCGCTATATTCCAATTTTT
* * *
51428448 GCGGCGTCTTTTACAATGCGCCACTAAAGAAATAAAATGAAGCAATAAAACGGTAGCGTTTTGTC
65 GCGGCGTTTTTTACAATGCGCCACTAAAGAAATAAAATGAAACAACAAAACGGTAGCGTTTTGTC
51428513 TAAAT
130 TAAAT
* * *
51428518 TTTTTCCTCAAATTAGTTATCTTTACCGGCGTTTCCCTGAAAACGTCGCTA-ATT-CAATCTTTT
1 TTTTTCCTCAAATTAGTTATCTTTACCGGCGTTTCTCAGAAAACGCCGCTATATTCCAAT-TTTT
* *
51428581 CCGGCGTTTTTTACAATGCGCCGCTAAAGAAATAAAATGAAACAACAAAACGGTA-CTGTTTTG-
65 GCGGCGTTTTTTACAATGCGCCACTAAAGAAATAAAATGAAACAACAAAACGGTAGC-GTTTTGT
*
51428644 CTCAGAT
129 CT-AAAT
* *
51428651 TTTTTCCTCAAATTCGTTATCTTTACCGGCGTTTCTAAGAAAACGCCGCTATATTCCAATTGTTT
1 TTTTTCCTCAAATTAGTTATCTTTACCGGCGTTTCTCAGAAAACGCCGCTATATTCCAATT-TTT
**
51428716 GCGGCGTTTTTGTGGAA-GCGCCACTAAA
65 GCGGCGTTTTT-TACAATGCGCCACTAAA
51428744 TTCATAAAGT
Statistics
Matches: 193, Mismatches: 25, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
132 7 0.04
133 111 0.58
134 45 0.23
135 27 0.14
136 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (134 bp):
TTTTTCCTCAAATTAGTTATCTTTACCGGCGTTTCTCAGAAAACGCCGCTATATTCCAATTTTTG
CGGCGTTTTTTACAATGCGCCACTAAAGAAATAAAATGAAACAACAAAACGGTAGCGTTTTGTCT
AAAT
Found at i:51430705 original size:37 final size:37
Alignment explanation
Indices: 51430639--51430749 Score: 213
Period size: 37 Copynumber: 3.0 Consensus size: 37
51430629 NNNNNNNNAG
51430639 CCACTTATCACTTTGTTTTCTTGATCAGATAAGTGTAA
1 CCACTTATCACTTTG-TTTCTTGATCAGATAAGTGTAA
51430677 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAA
1 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAA
51430714 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
51430750 GCTAAAACTA
Statistics
Matches: 73, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
37 58 0.79
38 15 0.21
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (37 bp):
CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAA
Found at i:51432439 original size:3 final size:3
Alignment explanation
Indices: 51432431--51432480 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
51432421 TTCGAAGATT
51432431 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
51432479 TT
1 TT
51432481 TTGAATGTAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:51432759 original size:30 final size:29
Alignment explanation
Indices: 51432723--51432817 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 29
51432713 AATTAAATTC
51432723 CATATTTATGAATAATACAGGGACTTATGT
1 CATATTTATGAATAATA-AGGGACTTATGT
* * *
51432753 CATATTT-TGACATTATAA--AACTAAAT-T
1 CATATTTATGA-ATAATAAGGGACT-TATGT
*
51432780 CCATATTTATGATTAATATAGGGACTTATGT
1 -CATATTTATGAATAATA-AGGGACTTATGT
51432811 CATATTT
1 CATATTT
51432818 TAACATTATA
Statistics
Matches: 50, Mismatches: 7, Indels: 16
0.68 0.10 0.22
Matches are distributed among these distances:
27 4 0.08
28 13 0.26
29 8 0.16
30 21 0.42
31 4 0.08
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.41
Consensus pattern (29 bp):
CATATTTATGAATAATAAGGGACTTATGT
Found at i:51432781 original size:58 final size:58
Alignment explanation
Indices: 51432716--51432829 Score: 201
Period size: 58 Copynumber: 2.0 Consensus size: 58
51432706 GAGCATAAAT
*
51432716 TAAATTCCATATTTATGAATAATACAGGGACTTATGTCATATTTTGACATTATAAAAC
1 TAAATTCCATATTTATGAATAATACAGGGACTTATGTCATATTTTAACATTATAAAAC
* *
51432774 TAAATTCCATATTTATGATTAATATAGGGACTTATGTCATATTTTAACATTATAAA
1 TAAATTCCATATTTATGAATAATACAGGGACTTATGTCATATTTTAACATTATAAA
51432830 TATATTAGTT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (58 bp):
TAAATTCCATATTTATGAATAATACAGGGACTTATGTCATATTTTAACATTATAAAAC
Found at i:51432969 original size:23 final size:24
Alignment explanation
Indices: 51432943--51432987 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
51432933 GATTAAGAAA
51432943 TTAAAACTAAAT-AATATATGTGT
1 TTAAAACTAAATAAATATATGTGT
***
51432966 TTAATTTTAAATAAATATATGT
1 TTAAAACTAAATAAATATATGT
51432988 ATCAAGTGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 9 0.50
24 9 0.50
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (24 bp):
TTAAAACTAAATAAATATATGTGT
Found at i:51434139 original size:22 final size:24
Alignment explanation
Indices: 51434114--51434164 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
51434104 TTATTTATAA
51434114 ATAAATAA-A-TCAA-ATT-AAAT
1 ATAAATAATACTCAATATTAAAAT
51434134 ATATAATAATACTCAATTATTAAAAT
1 ATA-AATAATACTCAA-TATTAAAAT
51434160 ATAAA
1 ATAAA
51434165 AGCATTGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
20 3 0.12
21 5 0.20
22 1 0.04
23 4 0.16
25 5 0.20
26 7 0.28
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (24 bp):
ATAAATAATACTCAATATTAAAAT
Found at i:51437240 original size:22 final size:22
Alignment explanation
Indices: 51437189--51437240 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
51437179 CAAAAGTAAC
51437189 AATAAAATAAGAGATATACAAT
1 AATAAAATAAGAGATATACAAT
* * * *
51437211 ATTCAAATAATAG-TAATATAAT
1 AATAAAATAAGAGAT-ATACAAT
51437233 AATAAAAT
1 AATAAAAT
51437241 GATGGCGTAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.29
Consensus pattern (22 bp):
AATAAAATAAGAGATATACAAT
Found at i:51437273 original size:14 final size:15
Alignment explanation
Indices: 51437249--51437281 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
51437239 ATGATGGCGT
*
51437249 AACAATGAAAACGAC
1 AACAATGAAAACAAC
51437264 AACAAT-AAAACAAC
1 AACAATGAAAACAAC
51437278 AACA
1 AACA
51437282 TTTTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.67, C:0.21, G:0.06, T:0.06
Consensus pattern (15 bp):
AACAATGAAAACAAC
Found at i:51438583 original size:15 final size:14
Alignment explanation
Indices: 51438558--51438599 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
51438548 GTCCATTTTC
51438558 AAATT-TTAAAAAT
1 AAATTATTAAAAAT
51438571 AATATTATT-AAAAT
1 AA-ATTATTAAAAAT
*
51438585 AAATTATTATAAAT
1 AAATTATTAAAAAT
51438599 A
1 A
51438600 TTAAACACGA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 8 0.32
14 15 0.60
15 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AAATTATTAAAAAT
Found at i:51439521 original size:27 final size:25
Alignment explanation
Indices: 51439480--51439529 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 25
51439470 TAATCACTTG
*
51439480 AAAAAAAATATAAAATCTAAAAATT
1 AAAAAAAATATAAAATATAAAAATT
51439505 AAAAAAAATATTCAAAATATAAAAA
1 AAAAAAAATA-T-AAAATATAAAAA
51439530 AATATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 1 0.05
27 11 0.50
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (25 bp):
AAAAAAAATATAAAATATAAAAATT
Found at i:51439541 original size:18 final size:18
Alignment explanation
Indices: 51439491--51439544 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
51439481 AAAAAAATAT
*
51439491 AAAATCTAAAAAT-TAAAA
1 AAAATATAAAAATAT-AAA
*
51439509 AAAATATTCAAAATATAAA
1 AAAATA-TAAAAATATAAA
51439528 AAAATATAAAAATATAA
1 AAAATATAAAAATATAA
51439545 GTGATGATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 15 0.48
19 15 0.48
20 1 0.03
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAATATAAAAATATAAA
Found at i:51445892 original size:25 final size:27
Alignment explanation
Indices: 51445848--51445903 Score: 73
Period size: 25 Copynumber: 2.1 Consensus size: 27
51445838 AATTGGGTCC
51445848 TAATTATAAAAAAATATAAA-ATTAATTT
1 TAATTAT-AAAAAATATAAATA-TAATTT
51445876 TAATTAT-AAAAA-ATAAATATAATTT
1 TAATTATAAAAAATATAAATATAATTT
51445901 TAA
1 TAA
51445904 AATTCAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 14 0.52
26 6 0.22
28 7 0.26
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (27 bp):
TAATTATAAAAAATATAAATATAATTT
Found at i:51453193 original size:50 final size:50
Alignment explanation
Indices: 51453118--51453310 Score: 305
Period size: 50 Copynumber: 3.8 Consensus size: 50
51453108 ATTTGGGTAA
*
51453118 AGAGGTCCCATGTAAGACCATGTCTGGGACATAGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
51453168 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
51453218 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
51453268 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
51453311 TGTTATTATC
Statistics
Matches: 130, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 96 0.74
51 34 0.26
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:51462874 original size:11 final size:11
Alignment explanation
Indices: 51462858--51462884 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
51462848 AATTGTGCAT
51462858 ATTAAATTTAA
1 ATTAAATTTAA
51462869 ATTAAATTTAA
1 ATTAAATTTAA
51462880 ATTAA
1 ATTAA
51462885 CTACTTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:51464769 original size:42 final size:41
Alignment explanation
Indices: 51464721--51464829 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 41
51464711 AAAGCTGAAT
* * *
51464721 AGAAGCTCATGGGAGCTAAACAGAAACCCATAAGGGTTGAAC
1 AGAAGCTCGTGAGAGCTAAAC-GAAACCCATAAGGGTTAAAC
* * ** * *
51464763 GGAAGCTCGTAAGAGCTGAATGGAAACTCATAAGGGTTAAAT
1 AGAAGCTCGTGAGAGCT-AAACGAAACCCATAAGGGTTAAAC
51464805 AGAAGCTCGTGAGAGCTAAACGAAA
1 AGAAGCTCGTGAGAGCTAAACGAAA
51464830 AGTAAACACG
Statistics
Matches: 53, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
41 6 0.11
42 45 0.85
43 2 0.04
ACGTcount: A:0.40, C:0.16, G:0.28, T:0.17
Consensus pattern (41 bp):
AGAAGCTCGTGAGAGCTAAACGAAACCCATAAGGGTTAAAC
Found at i:51477033 original size:28 final size:27
Alignment explanation
Indices: 51476998--51477054 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
51476988 ATGTGCAAAA
* *
51476998 ATTATAAAAT-ATAGAAAATTATAAAATT
1 ATTAT-AAATGATAAAAAAATAT-AAATT
51477026 ATTATAAATGATAAAAAAATATAAATT
1 ATTATAAATGATAAAAAAATATAAATT
51477053 AT
1 AT
51477055 GAAAAAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 11 0.42
28 15 0.58
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (27 bp):
ATTATAAATGATAAAAAAATATAAATT
Found at i:51477050 original size:17 final size:17
Alignment explanation
Indices: 51477028--51477062 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
51477018 ATAAAATTAT
51477028 TATAAATGATAAAAAAA
1 TATAAATGATAAAAAAA
* *
51477045 TATAAATTATGAAAAAA
1 TATAAATGATAAAAAAA
51477062 T
1 T
51477063 GTTTAAGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
TATAAATGATAAAAAAA
Found at i:51480450 original size:9 final size:9
Alignment explanation
Indices: 51480433--51480464 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
51480423 GTTTAATTTT
51480433 ATAATTCGA
1 ATAATTCGA
*
51480442 ATAACTCGA
1 ATAATTCGA
51480451 ATAATTCGA
1 ATAATTCGA
51480460 ATAAT
1 ATAAT
51480465 AGATTTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (9 bp):
ATAATTCGA
Found at i:51480594 original size:20 final size:19
Alignment explanation
Indices: 51480548--51480596 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
51480538 ATTACAAAAT
*
51480548 AATTCAAAATAATTTTCAA
1 AATTCAAAATAATTTTAAA
51480567 AATTCAAAAT-ATTTATAAA
1 AATTCAAAATAATTT-TAAA
51480586 AATTTCAAAAT
1 AA-TTCAAAAT
51480597 TTATATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 4 0.15
19 15 0.56
20 8 0.30
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (19 bp):
AATTCAAAATAATTTTAAA
Found at i:51496205 original size:42 final size:41
Alignment explanation
Indices: 51496150--51496288 Score: 152
Period size: 42 Copynumber: 3.3 Consensus size: 41
51496140 CGAAGGCTGC
* * * *
51496150 ACAGAAGCACATAAGTGCTAAACAGAAACCCGTAAGGGTTGA
1 ACAGAAGCTCATAAGAGCTGAAC-GAAACCCATAAGGGTTGA
* * *
51496192 ACGGAAGCTCATAAGAGCTGAACGAAAACCTATAAGGGTTAA
1 ACAGAAGCTCATAAGAGCTGAACG-AAACCCATAAGGGTTGA
* * *
51496234 ACTGAAGCTCAAAAGAGCTGAACGGAAACCCATTAGGGTTGA
1 ACAGAAGCTCATAAGAGCTGAAC-GAAACCCATAAGGGTTGA
*
51496276 ACAGAAACTCATA
1 ACAGAAGCTCATA
51496289 TGAGTTAATA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
41 1 0.01
42 78 0.98
43 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (41 bp):
ACAGAAGCTCATAAGAGCTGAACGAAACCCATAAGGGTTGA
Found at i:51496213 original size:21 final size:21
Alignment explanation
Indices: 51496189--51496260 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
51496179 CCGTAAGGGT
51496189 TGAACGGAAGCTCATAAGAGC
1 TGAACGGAAGCTCATAAGAGC
* * * *
51496210 TGAACGAAAAC-CTATAAGGGT
1 TGAACGGAAGCTC-ATAAGAGC
* * *
51496231 TAAACTGAAGCTCAAAAGAGC
1 TGAACGGAAGCTCATAAGAGC
51496252 TGAACGGAA
1 TGAACGGAA
51496261 ACCCATTAGG
Statistics
Matches: 36, Mismatches: 13, Indels: 4
0.68 0.25 0.08
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.43, C:0.17, G:0.25, T:0.15
Consensus pattern (21 bp):
TGAACGGAAGCTCATAAGAGC
Found at i:51497996 original size:51 final size:51
Alignment explanation
Indices: 51497918--51498020 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 51
51497908 CAAGGAAATT
* *
51497918 CAAATCAAAATAATATTTGTTTACGATTCTAAACAATTTTTCAAAGTACTC
1 CAAATCAAAATAATATTTGTTTACGATTCCAAACAATTTGTCAAAGTACTC
* *
51497969 CAAATCAAAATAATCTTTGTTTGCGATTCCAAACAATTTGTCAAAGTACTC
1 CAAATCAAAATAATATTTGTTTACGATTCCAAACAATTTGTCAAAGTACTC
51498020 C
1 C
51498021 TTCACCGTCT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (51 bp):
CAAATCAAAATAATATTTGTTTACGATTCCAAACAATTTGTCAAAGTACTC
Found at i:51498336 original size:27 final size:27
Alignment explanation
Indices: 51498298--51498352 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
51498288 CTTCCTCCAC
51498298 AACTTCCTAGAGATCATTTGCTTCTAA
1 AACTTCCTAGAGATCATTTGCTTCTAA
51498325 AACTTCCTAGAGATCATTTGCTTCTAA
1 AACTTCCTAGAGATCATTTGCTTCTAA
51498352 A
1 A
51498353 TGAGCCTCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (27 bp):
AACTTCCTAGAGATCATTTGCTTCTAA
Found at i:51500266 original size:17 final size:17
Alignment explanation
Indices: 51500241--51500274 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51500231 ATAACCCATC
51500241 CAACCTTTTCCTTGTTT
1 CAACCTTTTCCTTGTTT
*
51500258 CAACTTTTTCCTTGTTT
1 CAACCTTTTCCTTGTTT
51500275 ACAAGAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.26, G:0.06, T:0.56
Consensus pattern (17 bp):
CAACCTTTTCCTTGTTT
Found at i:51504843 original size:20 final size:21
Alignment explanation
Indices: 51504820--51504864 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
51504810 AAAAAATTAC
51504820 AAAAAAATCAAAAT-AATTTT
1 AAAAAAATCAAAATAAATTTT
* *
51504840 AAAAAATTCAAAGTAAATTTT
1 AAAAAAATCAAAATAAATTTT
51504861 AAAA
1 AAAA
51504865 TTCAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAAAAATCAAAATAAATTTT
Done.