Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 181 of 190
Found at i:53155526 original size:34 final size:34
Alignment explanation
Indices: 53155485--53155551 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
53155475 CTAAGAAAAG
53155485 ACCAGTTAGTAACATATTGAGCATTAACTAAGAA
1 ACCAGTTAGTAACATATTGAGCATTAACTAAGAA
*
53155519 ACCAGTTAGTAATATATTGAGCATTAACTAAGA
1 ACCAGTTAGTAACATATTGAGCATTAACTAAGA
53155552 GACAAGATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.28
Consensus pattern (34 bp):
ACCAGTTAGTAACATATTGAGCATTAACTAAGAA
Found at i:53170576 original size:14 final size:15
Alignment explanation
Indices: 53170552--53170593 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
53170542 AAATAAATTA
53170552 AAAAATCAAAAAAAG-
1 AAAAAT-AAAAAAAGC
*
53170567 AAAAAT-AAAATAGC
1 AAAAATAAAAAAAGC
53170581 AAAAATAAAAAAA
1 AAAAATAAAAAAA
53170594 CTCTCAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 6 0.26
14 6 0.26
15 11 0.48
ACGTcount: A:0.81, C:0.05, G:0.05, T:0.10
Consensus pattern (15 bp):
AAAAATAAAAAAAGC
Found at i:53175491 original size:24 final size:24
Alignment explanation
Indices: 53175457--53175509 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
53175447 TTTCTAGAAG
* **
53175457 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAACATAATAT
*
53175481 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATGAACATAATAT
53175505 ATTTA
1 ATTTA
53175510 ACTTTGATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.49
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:53175519 original size:24 final size:24
Alignment explanation
Indices: 53175474--53175519 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
53175464 ATTTATGAGT
*
53175474 ATAATATATTTAGCATTTATTAAC
1 ATAATATATTTAACATTTATTAAC
53175498 ATAATATATTTAAC-TTTGATTA
1 ATAATATATTTAACATTT-ATTA
53175520 GAATTAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (24 bp):
ATAATATATTTAACATTTATTAAC
Found at i:53189753 original size:31 final size:34
Alignment explanation
Indices: 53189705--53189766 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 34
53189695 AGGTGACGTC
53189705 ATTATACTTTAACCC-TTTAAAAT-ATGAAAAAT
1 ATTATACTTTAACCCTTTTAAAATGATGAAAAAT
*
53189737 ATTATA-TTTAATCCTTTTAAAATGATGAAA
1 ATTATACTTTAACCCTTTTAAAATGATGAAA
53189767 TTATAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 7 0.26
32 14 0.52
33 6 0.22
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (34 bp):
ATTATACTTTAACCCTTTTAAAATGATGAAAAAT
Found at i:53190956 original size:21 final size:21
Alignment explanation
Indices: 53190932--53190984 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
53190922 TATTATTTCT
* *
53190932 AATCTCACCGCTATAGTATCC
1 AATCTCACCGCTACAGTAACC
* *
53190953 AATCTCACCACTACAGTAACT
1 AATCTCACCGCTACAGTAACC
53190974 AATCTCACCGC
1 AATCTCACCGC
53190985 CACCGTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.36, G:0.08, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:53191101 original size:13 final size:13
Alignment explanation
Indices: 53191083--53191120 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
53191073 AGTTCTTCAT
53191083 TGCTTTTGAAAAA
1 TGCTTTTGAAAAA
* *
53191096 TGCTTTTGAGAAG
1 TGCTTTTGAAAAA
53191109 TGCTTTTGAAAA
1 TGCTTTTGAAAA
53191121 TTTTGAATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAA
Found at i:53193290 original size:72 final size:72
Alignment explanation
Indices: 53193165--53193335 Score: 258
Period size: 72 Copynumber: 2.4 Consensus size: 72
53193155 AAAATCATAT
* * *
53193165 ATAAACAACTATTGATAAAACTA-ATTTAATAAAAATAAGTAGAACATAAATTCAATATCTAAAG
1 ATAAACAACTATTGATAAAACTAGATTTAACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
53193229 ACCAAAC
66 ACCAAAC
* *
53193236 ATAAACAACTATTAATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGATTTA-ACAAAAATAAGTAGAACATAAATTCAATATCCAAA
53193300 AACCAAAC
65 AACCAAAC
*
53193308 ATAAATAACTATTGATAAAACTAG-TTTA
1 ATAAACAACTATTGATAAAACTAGATTTA
53193336 GCATTGTCAG
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
71 25 0.28
72 65 0.72
ACGTcount: A:0.56, C:0.13, G:0.05, T:0.26
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTTAACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:53195729 original size:23 final size:24
Alignment explanation
Indices: 53195677--53195733 Score: 80
Period size: 25 Copynumber: 2.4 Consensus size: 24
53195667 GAAGTGGAGA
*
53195677 AGAGGAACAAAGAATAAGCACCAGC
1 AGAGGAACAAAGAACAAGCA-CAGC
*
53195702 AGAGGAACAAAGAACCAGCA-AGC
1 AGAGGAACAAAGAACAAGCACAGC
53195725 AGAGGAACA
1 AGAGGAACA
53195734 CCAACACCAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 12 0.40
25 18 0.60
ACGTcount: A:0.53, C:0.19, G:0.26, T:0.02
Consensus pattern (24 bp):
AGAGGAACAAAGAACAAGCACAGC
Found at i:53195822 original size:14 final size:14
Alignment explanation
Indices: 53195803--53195832 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
53195793 GAACACTAGC
53195803 ACCAGCAGAGAAGA
1 ACCAGCAGAGAAGA
53195817 ACCAGCAGAGAAGA
1 ACCAGCAGAGAAGA
53195831 AC
1 AC
53195833 AAATGTGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.23, G:0.27, T:0.00
Consensus pattern (14 bp):
ACCAGCAGAGAAGA
Found at i:53198768 original size:21 final size:20
Alignment explanation
Indices: 53198736--53198774 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
53198726 AATTCAAAAA
*
53198736 TAAAAAATAAAAATGAATTT
1 TAAAAAATAAAAAAGAATTT
*
53198756 TAAAATATAAAAAAAGAAT
1 TAAAAAAT-AAAAAAGAAT
53198775 CTAAGATTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (20 bp):
TAAAAAATAAAAAAGAATTT
Found at i:53200361 original size:2 final size:2
Alignment explanation
Indices: 53200354--53200396 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
53200344 GTGTCATTTG
*
53200354 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
53200396 T
1 T
53200397 CACCGTCCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:53208850 original size:41 final size:41
Alignment explanation
Indices: 53208775--53208855 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
53208765 AACTAGTTTG
* * *
53208775 TATTATTTATTTAATTGTGATTATTATCGCAAGTGCTACTA
1 TATTATTCATTTAATGGTGATTATTATCACAAGTGCTACTA
* *
53208816 TATTATTCATTTAATGGTGATTATTATTATAAGTGCTACT
1 TATTATTCATTTAATGGTGATTATTATCACAAGTGCTACT
53208856 CTAAATTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.49
Consensus pattern (41 bp):
TATTATTCATTTAATGGTGATTATTATCACAAGTGCTACTA
Found at i:53209912 original size:10 final size:11
Alignment explanation
Indices: 53209897--53209970 Score: 82
Period size: 11 Copynumber: 6.8 Consensus size: 11
53209887 CCCATTTTTA
53209897 TTTTAAAA-AT
1 TTTTAAAATAT
53209907 TTTTAAAA-AT
1 TTTTAAAATAT
***
53209917 TAAAAAAAAGTAT
1 TTTTA-AAA-TAT
53209930 TTTTAAAATAT
1 TTTTAAAATAT
53209941 TTTTAAAATAT
1 TTTTAAAATAT
53209952 TTTTAAAATA-
1 TTTTAAAATAT
53209962 TTTTAAAAT
1 TTTTAAAAT
53209971 TAAAAAATTA
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
10 21 0.38
11 27 0.49
12 3 0.05
13 4 0.07
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:53210004 original size:8 final size:9
Alignment explanation
Indices: 53209931--53210038 Score: 68
Period size: 9 Copynumber: 12.0 Consensus size: 9
53209921 AAAAAGTATT
53209931 TTTAAAATA
1 TTTAAAATA
53209940 TTTTTAAAATA
1 --TTTAAAATA
53209951 TTTTTAAAATA
1 --TTTAAAATA
*
53209962 TTTTAAA-A
1 TTTAAAATA
*
53209970 -TTAAAAAA
1 TTTAAAATA
*
53209978 TTAAAAAAGTA
1 TT-TAAAA-TA
53209989 TTTAAAATA
1 TTTAAAATA
53209998 TTT--AA-A
1 TTTAAAATA
53210004 -TTAAAA-A
1 TTTAAAATA
*
53210011 TTAAAAAGTA
1 TTTAAAA-TA
53210021 TTTAAAATA
1 TTTAAAATA
53210030 TTTAAAATA
1 TTTAAAATA
53210039 AATATATTTA
Statistics
Matches: 81, Mismatches: 7, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
5 2 0.02
6 1 0.01
7 10 0.12
8 7 0.09
9 23 0.28
10 15 0.19
11 23 0.28
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (9 bp):
TTTAAAATA
Found at i:53210022 original size:32 final size:33
Alignment explanation
Indices: 53209953--53210040 Score: 133
Period size: 32 Copynumber: 2.6 Consensus size: 33
53209943 TTAAAATATT
53209953 TTTAAAATATTTTAAAATTAAAAAATTAAAAAAGTA
1 TTTAAAATA-TTT-AAATT-AAAAATTAAAAAAGTA
53209989 TTTAAAATATTTAAATTAAAAATT-AAAAAGTA
1 TTTAAAATATTTAAATTAAAAATTAAAAAAGTA
*
53210021 TTTAAAATATTTAAAATAAA
1 TTTAAAATATTTAAATTAAA
53210041 TATATTTATT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
32 27 0.53
33 7 0.14
34 5 0.10
35 3 0.06
36 9 0.18
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (33 bp):
TTTAAAATATTTAAATTAAAAATTAAAAAAGTA
Found at i:53211385 original size:3 final size:3
Alignment explanation
Indices: 53211377--53211402 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
53211367 AGGGAAAACA
53211377 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
53211403 AAGGCCAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:53213078 original size:17 final size:17
Alignment explanation
Indices: 53213056--53213090 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
53213046 TTATCAAACA
*
53213056 ATTTAATTATACTTAAT
1 ATTTAATTATACATAAT
*
53213073 ATTTAATTTTACATAAT
1 ATTTAATTATACATAAT
53213090 A
1 A
53213091 CACCAAACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAATTATACATAAT
Found at i:53218555 original size:4 final size:4
Alignment explanation
Indices: 53218546--53218607 Score: 83
Period size: 4 Copynumber: 16.0 Consensus size: 4
53218536 ATAAAAAAGA
* * *
53218546 TATG TATG TA-- TATG TATG CATG CATG CATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
53218592 TATG TATG TATG TATG
1 TATG TATG TATG TATG
53218608 ATTGAATGAG
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
2 2 0.04
4 52 0.96
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (4 bp):
TATG
Found at i:53226787 original size:9 final size:9
Alignment explanation
Indices: 53226773--53226801 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
53226763 AAAGAACCCC
53226773 ATGAATTCG
1 ATGAATTCG
53226782 ATGAATTCG
1 ATGAATTCG
53226791 ATGAATTCG
1 ATGAATTCG
53226800 AT
1 AT
53226802 AAATATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (9 bp):
ATGAATTCG
Found at i:53234596 original size:13 final size:13
Alignment explanation
Indices: 53234578--53234615 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
53234568 TTAGAATTAA
53234578 ATGAAATGAAATT
1 ATGAAATGAAATT
53234591 ATGAAAT-AAATT
1 ATGAAATGAAATT
53234603 -TGAAATGTAAATT
1 ATGAAATG-AAATT
53234616 TTTAGGTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 12 0.52
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (13 bp):
ATGAAATGAAATT
Found at i:53239764 original size:21 final size:21
Alignment explanation
Indices: 53239738--53239777 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
53239728 AGTTGGTCGC
53239738 ATGAAATTAAAGAAAAGAATA
1 ATGAAATTAAAGAAAAGAATA
53239759 ATGAAATTAAAGAAAAGAA
1 ATGAAATTAAAGAAAAGAA
53239778 AAGAATAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.15, T:0.17
Consensus pattern (21 bp):
ATGAAATTAAAGAAAAGAATA
Found at i:53239909 original size:13 final size:13
Alignment explanation
Indices: 53239891--53239918 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
53239881 TGAATTAACG
53239891 TCACCATGCAAAA
1 TCACCATGCAAAA
53239904 TCACCATGCAAAA
1 TCACCATGCAAAA
53239917 TC
1 TC
53239919 CTTTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.32, G:0.07, T:0.18
Consensus pattern (13 bp):
TCACCATGCAAAA
Found at i:53241671 original size:83 final size:84
Alignment explanation
Indices: 53241578--53241791 Score: 304
Period size: 84 Copynumber: 2.6 Consensus size: 84
53241568 CAATCTTGCG
* * * *
53241578 CACTACAAGATTTTATTCCAGTAGAGAAACGGCGCCGCATTGGCAAACATTAATTCAGT-TTGCG
1 CACTATAAGATTTTATTCCAATAGAGAAACGGTGCCGCATTGGCAAACATTAATTCACTATTGCG
* *
53241642 GCTTTTTATTAAAAAAAGC
66 CCGTTTTATTAAAAAAAGC
* *
53241661 CACTATAAGATTTTATTCCAATAGAGAAACGGTGCTGAATTGGCAAACATTAATTCACTATTGCG
1 CACTATAAGATTTTATTCCAATAGAGAAACGGTGCCGCATTGGCAAACATTAATTCACTATTGCG
* *
53241726 CCGTTTTCTTAAAAAATGC
66 CCGTTTTATTAAAAAAAGC
* * *
53241745 CACTATAAGATTTTATTCCACTAGAGAAACGGTGCCGCTTTGCCAAA
1 CACTATAAGATTTTATTCCAATAGAGAAACGGTGCCGCATTGGCAAA
53241792 TTTTAATAAA
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
83 53 0.46
84 62 0.54
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (84 bp):
CACTATAAGATTTTATTCCAATAGAGAAACGGTGCCGCATTGGCAAACATTAATTCACTATTGCG
CCGTTTTATTAAAAAAAGC
Found at i:53241827 original size:84 final size:84
Alignment explanation
Indices: 53241578--53241825 Score: 277
Period size: 84 Copynumber: 3.0 Consensus size: 84
53241568 CAATCTTGCG
* * * * *
53241578 CACTACAAGATTTTATTCCAGTAGAGAAACGGCGCCGCATTGGCAAACATTAATTCAGT-TTGCG
1 CACTATAAGATTTTATTCCACTAGAGAAACGGTGCCGCATTGGCAAACATTAA-TAAATCTTGCG
* *
53241642 GC-TTTTTATTAAAAAAAGC
65 GCGTTTTCATTAAAAAATGC
* * * * * *
53241661 CACTATAAGATTTTATTCCAATAGAGAAACGGTGCTGAATTGGCAAACATTAATTCACTATTGCG
1 CACTATAAGATTTTATTCCACTAGAGAAACGGTGCCGCATTGGCAAACATTAA-TAAATCTTGCG
*
53241726 CCGTTTTC-TTAAAAAATGC
65 GCGTTTTCATTAAAAAATGC
* * **
53241745 CACTATAAGATTTTATTCCACTAGAGAAACGGTGCCGCTTTGCCAAATTTTAATAAATCCTTGCG
1 CACTATAAGATTTTATTCCACTAGAGAAACGGTGCCGCATTGGCAAACATTAATAAAT-CTTGCG
*
53241810 GCGTTTTCACTAAAAA
65 GCGTTTTCATTAAAAA
53241826 TGTCACAAAA
Statistics
Matches: 140, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
83 56 0.40
84 74 0.53
85 10 0.07
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (84 bp):
CACTATAAGATTTTATTCCACTAGAGAAACGGTGCCGCATTGGCAAACATTAATAAATCTTGCGG
CGTTTTCATTAAAAAATGC
Found at i:53242350 original size:19 final size:19
Alignment explanation
Indices: 53242286--53242355 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
53242276 CCCCAAATCT
53242286 CTAATCCCTAATCCCTAACCC
1 CTAATCCCTAA-CCC-AACCC
* * *
53242307 CTAAGCCATAACCCAA-AC
1 CTAATCCCTAACCCAACCC
*
53242325 CTGAATCCCTAACTCAACCC
1 CT-AATCCCTAACCCAACCC
53242345 CTAATCCCTAA
1 CTAATCCCTAA
53242356 ACCTTATTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
18 3 0.08
19 22 0.55
20 6 0.15
21 9 0.22
ACGTcount: A:0.34, C:0.43, G:0.03, T:0.20
Consensus pattern (19 bp):
CTAATCCCTAACCCAACCC
Found at i:53242438 original size:82 final size:81
Alignment explanation
Indices: 53242340--53242501 Score: 245
Period size: 82 Copynumber: 2.0 Consensus size: 81
53242330 TCCCTAACTC
*
53242340 AACCCCTAATCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCATAA
1 AACCCCTAATCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCAT-A
*
53242405 ACCATAACCCGACCCCA
65 ACCATAACCCAACCCCA
* * * *
53242422 AACCCCTAA-CCTCTAAACCTTATTTAATATATAAATTAAAAAACAGTAGTTAGTCTAAACCCTA
1 AACCCCTAATCC-CTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCATA
53242486 ACCATAACCCAACCCC
65 ACCATAACCCAACCCC
53242502 GAATCCTTAA
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 18 0.25
82 55 0.75
ACGTcount: A:0.44, C:0.28, G:0.02, T:0.25
Consensus pattern (81 bp):
AACCCCTAATCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCATAA
CCATAACCCAACCCCA
Found at i:53242536 original size:14 final size:14
Alignment explanation
Indices: 53242517--53242551 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
53242507 CTTAACTCGG
*
53242517 CCCCTAACCCTTAA
1 CCCCTAACCCATAA
53242531 CCCCTAACCCATAA
1 CCCCTAACCCATAA
53242545 CCCCTAA
1 CCCCTAA
53242552 ACATTATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.17
Consensus pattern (14 bp):
CCCCTAACCCATAA
Found at i:53242621 original size:114 final size:111
Alignment explanation
Indices: 53242416--53242741 Score: 345
Period size: 114 Copynumber: 3.0 Consensus size: 111
53242406 CCATAACCCG
* * * * * *
53242416 ACCCCAAACCCCTAACCTCTAAACCTTATTTAATATATAAATTAAAAAACAGTAGTTAGTCTAAA
1 ACCCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATTTAAA
* *
53242481 CCCT-AACCATAACCCAACCCCGAATCCTTAACTCGGCCCCTAACCCTT
66 CCCTAAACCATAACCCGACCCC-AATCCCTAAC-C-GCCCCTAACCCTT
* * *
53242529 AACCCCTAACCCATAACCCCTAAACATTATTTAATATGTAAATT-AAAAACACTAATTAATTTAA
1 -ACCCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATTTAA
53242593 ACCCTAAACCATAACCCGACCCCAAATCCCTAA---CCCC-AA-CCTT
65 ACCCTAAACCATAACCCGACCCC-AATCCCTAACCGCCCCTAACCCTT
*
53242636 -----TAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAA
1 ACCCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAAT-TTAA
* * * *
53242696 ACCTTAAATCATAA-CTGACCCCAATCCCCAACCCGACCCCTAACCC
65 ACCCTAAACCATAACCCGACCCCAATCCCTAA-CCG-CCCCTAACCC
53242742 CTAAACATTA
Statistics
Matches: 182, Mismatches: 20, Indels: 26
0.80 0.09 0.11
Matches are distributed among these distances:
101 43 0.24
102 23 0.13
103 15 0.08
106 4 0.02
107 6 0.03
108 4 0.02
109 4 0.02
113 21 0.12
114 62 0.34
ACGTcount: A:0.40, C:0.33, G:0.03, T:0.24
Consensus pattern (111 bp):
ACCCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATTTAAA
CCCTAAACCATAACCCGACCCCAATCCCTAACCGCCCCTAACCCTT
Found at i:53242753 original size:93 final size:93
Alignment explanation
Indices: 53242536--53242893 Score: 357
Period size: 93 Copynumber: 3.9 Consensus size: 93
53242526 CTTAACCCCT
* * * *
53242536 AACCCATAACCCCTAAACATTATTTAATATGTAAATT-AAAAACACTAATTAATTTAAACCCTAA
1 AACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAAACCTAA
* *
53242600 ACCATAACCCGACCCCAAATCCCTAACCCCAACCTTT
66 ACCATAACCTGACCCC-AA----T--CCCCAACC--C
*
53242637 AACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAAACCTTA
1 AACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAAACC-TA
*
53242702 AATCATAA-CTGACCCCAATCCCCAACCC
65 AACCATAACCTGACCCCAATCCCCAACCC
* * * *
53242730 GACCCCTAACCCCTAAACATTATTTAATAAATAACTTAAAAAACACTAATTAATCTAAATCCTAA
1 AACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAAACCTAA
*
53242795 ACCATAACCTG------AT---C--CCG
66 ACCATAACCTGACCCCAATCCCCAACCC
* * * *
53242812 AATCCCTAACCCCTAAACCTTATTTAATATATAAATT-AAAAATACTAATTAATCTAAACCCTAA
1 AACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAAACCTAA
* *
53242876 ACCATGACCTGGCCCCAA
66 ACCATAACCTGACCCCAA
53242894 ATCCTTAACC
Statistics
Matches: 225, Mismatches: 23, Indels: 32
0.80 0.08 0.11
Matches are distributed among these distances:
81 35 0.16
82 34 0.15
84 1 0.00
87 3 0.01
92 9 0.04
93 60 0.27
95 8 0.04
97 1 0.00
101 36 0.16
102 29 0.13
103 9 0.04
ACGTcount: A:0.43, C:0.29, G:0.03, T:0.25
Consensus pattern (93 bp):
AACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAAACCTAA
ACCATAACCTGACCCCAATCCCCAACCC
Found at i:53242875 original size:81 final size:82
Alignment explanation
Indices: 53242733--53242914 Score: 249
Period size: 81 Copynumber: 2.2 Consensus size: 82
53242723 CCAACCCGAC
* * *
53242733 CCCTAACCCCTAAACATTATTTAATAAATAACTTAAAAAACACTAATTAATCTAAATCCTAAACC
1 CCCTAACCCCTAAACCTTATTTAATAAATAAATTAAAAAACACTAATTAATCTAAACCCTAAACC
* *
53242798 ATAACCTGATCCCGAAT
66 ATAACCTGACCCCAAAT
* *
53242815 CCCTAACCCCTAAACCTTATTTAATATATAAATT-AAAAATACTAATTAATCTAAACCCTAAACC
1 CCCTAACCCCTAAACCTTATTTAATAAATAAATTAAAAAACACTAATTAATCTAAACCCTAAACC
* *
53242879 ATGACCTGGCCCCAAAT
66 ATAACCTGACCCCAAAT
* * *
53242896 CCTTAACCCTTAACCCTTA
1 CCCTAACCCCTAAACCTTA
53242915 ACCATATATT
Statistics
Matches: 88, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
81 57 0.65
82 31 0.35
ACGTcount: A:0.42, C:0.28, G:0.03, T:0.27
Consensus pattern (82 bp):
CCCTAACCCCTAAACCTTATTTAATAAATAAATTAAAAAACACTAATTAATCTAAACCCTAAACC
ATAACCTGACCCCAAAT
Found at i:53243480 original size:40 final size:40
Alignment explanation
Indices: 53243436--53243511 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
53243426 TGCTTTCAAG
53243436 AAAGCG-TCGCTAATGCTCGATCTTTAGCGGCGTTTTATGT
1 AAAGCGCT-GCTAATGCTCGATCTTTAGCGGCGTTTTATGT
* ** *
53243476 AAAGCGCTTCTAATGCTCTCTTTTTAGCGGCGTTTT
1 AAAGCGCTGCTAATGCTCGATCTTTAGCGGCGTTTT
53243512 TTTTCAAACG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 30 0.97
41 1 0.03
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.38
Consensus pattern (40 bp):
AAAGCGCTGCTAATGCTCGATCTTTAGCGGCGTTTTATGT
Found at i:53246930 original size:57 final size:60
Alignment explanation
Indices: 53246828--53246938 Score: 149
Period size: 57 Copynumber: 1.9 Consensus size: 60
53246818 AATTACTAAA
* *
53246828 CTATTAATAAATCTCTTTTTTATCACCTAATTATAGAAAGGTATAAAATGGTCAGTCAAC
1 CTATTAATAAATCTCTTTTTTATCACCCAACTATAGAAAGGTATAAAATGGTCAGTCAAC
* *
53246888 CTATTAAT-AAT-T-TTTTTTCTCACCCAACTAT-GAAAAGTTATAAAATGGTCA
1 CTATTAATAAATCTCTTTTTTATCACCCAACTATAG-AAAGGTATAAAATGGTCA
53246939 CCTAATTATC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
56 1 0.02
57 33 0.72
58 1 0.02
59 3 0.07
60 8 0.17
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (60 bp):
CTATTAATAAATCTCTTTTTTATCACCCAACTATAGAAAGGTATAAAATGGTCAGTCAAC
Found at i:53251460 original size:11 final size:11
Alignment explanation
Indices: 53251444--53251470 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
53251434 AAACTTTTAC
53251444 AAGAAAAAAAA
1 AAGAAAAAAAA
53251455 AAGAAAAAAAA
1 AAGAAAAAAAA
53251466 AAGAA
1 AAGAA
53251471 CTTAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:53254472 original size:19 final size:18
Alignment explanation
Indices: 53254434--53254472 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
53254424 TAATAAAGTG
* *
53254434 TGTATAATAAAATTAAAA
1 TGTATAAAAAAATCAAAA
53254452 TGTATAAAAAAGATCAAAA
1 TGTATAAAAAA-ATCAAAA
53254471 TG
1 TG
53254473 AAGCTTTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.28
Consensus pattern (18 bp):
TGTATAAAAAAATCAAAA
Found at i:53256331 original size:39 final size:39
Alignment explanation
Indices: 53256288--53256364 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
53256278 TTTATAACTT
*
53256288 AATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
53256327 AATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
53256365 TAAAAAGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (39 bp):
AATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:53256559 original size:22 final size:22
Alignment explanation
Indices: 53256534--53256577 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
53256524 TTTTTTTTTT
53256534 CTTTCT-TCTTATTCTTCTTCTC
1 CTTTCTCTCTT-TTCTTCTTCTC
*
53256556 CTTTCTCTCTTTTCTTTTTCTC
1 CTTTCTCTCTTTTCTTCTTCTC
53256578 TTTTGGTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (22 bp):
CTTTCTCTCTTTTCTTCTTCTC
Found at i:53262738 original size:8 final size:8
Alignment explanation
Indices: 53262725--53262750 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
53262715 AATACAACCC
53262725 ATTTTAGA
1 ATTTTAGA
53262733 ATTTTAGA
1 ATTTTAGA
53262741 ATTTTAGA
1 ATTTTAGA
53262749 AT
1 AT
53262751 ATGTGATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (8 bp):
ATTTTAGA
Found at i:53286435 original size:16 final size:16
Alignment explanation
Indices: 53286416--53286446 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
53286406 CAAAGAGTAC
*
53286416 AACAGAAGAAGAATAT
1 AACAGAAGAAAAATAT
53286432 AACAGAAGAAAAATA
1 AACAGAAGAAAAATA
53286447 ATAAATTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.06, G:0.16, T:0.10
Consensus pattern (16 bp):
AACAGAAGAAAAATAT
Found at i:53288405 original size:32 final size:31
Alignment explanation
Indices: 53288324--53288405 Score: 75
Period size: 31 Copynumber: 2.8 Consensus size: 31
53288314 TTGGCCTCAA
*
53288324 TGTTCAATTTTGTACCT-AAA---CATTTTT
1 TGTTCAATTTGGTACCTGAAACTTCATTTTT
* * * *
53288351 TATCCAATTAGGTACTTG-AACTTCATTTTTT
1 TGTTCAATTTGGTACCTGAAACTTCA-TTTTT
53288382 TGTTCAATTTGGTACCTGAAACTT
1 TGTTCAATTTGGTACCTGAAACTT
53288406 GGATATATAG
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
27 14 0.35
30 2 0.05
31 19 0.47
32 5 0.12
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.48
Consensus pattern (31 bp):
TGTTCAATTTGGTACCTGAAACTTCATTTTT
Found at i:53292883 original size:3 final size:3
Alignment explanation
Indices: 53292875--53292906 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
53292865 CCAGCACTTG
53292875 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
53292907 ACAACAAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:53294095 original size:4 final size:4
Alignment explanation
Indices: 53294086--53294111 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
53294076 GAATCAAATA
53294086 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
53294112 TATAATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:53301909 original size:51 final size:51
Alignment explanation
Indices: 53301792--53301976 Score: 164
Period size: 51 Copynumber: 3.6 Consensus size: 51
53301782 AAAGTGATGG
* * * * * * *
53301792 TCACGTGTGTAGTACTATATACAGGCTACTACGTGTATCGGAATGAT-A-GG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTA-CCGAATGATAATGA
* *
53301842 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC--A-GATAGTTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATGATA--AT-GA
* * * * * *
53301893 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGAATGATAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATGATAATGA
53301944 TCACATGTGTAGTACTATGTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
53301977 TGAACCAAAA
Statistics
Matches: 107, Mismatches: 20, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
46 3 0.03
47 1 0.01
49 1 0.01
50 31 0.29
51 65 0.61
52 1 0.01
53 1 0.01
54 4 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATGATAATGA
Found at i:53301921 original size:101 final size:102
Alignment explanation
Indices: 53301792--53301976 Score: 311
Period size: 101 Copynumber: 1.8 Consensus size: 102
53301782 AAAGTGATGG
* *
53301792 TCACGTGTGTAGTACTATATACAGGCTACTACGTGTATCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATATACAAGCTACTACGTGTATC-GAATGATAATGGTCACATGTGTAGT
53301855 ACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
* *
53301893 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATATACAAGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
53301958 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
53301977 TGAACCAAAA
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
100 7 0.09
101 37 0.47
102 34 0.44
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATATACAAGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
Found at i:53302038 original size:45 final size:45
Alignment explanation
Indices: 53301987--53302073 Score: 140
Period size: 45 Copynumber: 1.9 Consensus size: 45
53301977 TGAACCAAAA
*
53301987 ATCATTGATTAGTAAGGTGATTGCTATGTGCTG-ATTCCACCGGAC
1 ATCATTGATTAATAAGGTGATTGCTATGTGCTGAATT-CACCGGAC
*
53302032 ATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATTCACCG
1 ATCATTGATTAATAAGGTGATTGCTATGTGCTGAATTCACCG
53302074 AGTATCTGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
45 36 0.92
46 3 0.08
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.34
Consensus pattern (45 bp):
ATCATTGATTAATAAGGTGATTGCTATGTGCTGAATTCACCGGAC
Found at i:53302144 original size:23 final size:22
Alignment explanation
Indices: 53302118--53302161 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
53302108 AATTTAATAA
53302118 GTGT-AATTGAATAATGAATATAG
1 GTGTGAATTGAAT--TGAATATAG
53302141 GTGTGGAATTGAATTGAATAT
1 GTGT-GAATTGAATTGAATAT
53302162 CGACTTAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (22 bp):
GTGTGAATTGAATTGAATATAG
Found at i:53302220 original size:37 final size:38
Alignment explanation
Indices: 53302149--53302221 Score: 107
Period size: 37 Copynumber: 1.9 Consensus size: 38
53302139 AGGTGTGGAA
53302149 TTGAATTGAATATCGACTTAGAAATGAAAAAGTGAATT
1 TTGAATTGAATATCGACTTAGAAATGAAAAAGTGAATT
53302187 TTGAATTGAAT-TCTGA-TT-GAAAGTGAAAAAGTGAA
1 TTGAATTGAATATC-GACTTAGAAA-TGAAAAAGTGAA
53302222 ATTATGAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
36 4 0.12
37 16 0.48
38 13 0.39
ACGTcount: A:0.44, C:0.04, G:0.21, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATATCGACTTAGAAATGAAAAAGTGAATT
Found at i:53305408 original size:43 final size:42
Alignment explanation
Indices: 53305342--53305470 Score: 147
Period size: 43 Copynumber: 3.0 Consensus size: 42
53305332 ATAGGATTTC
53305342 CGATATGTGTTATCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTGTTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
* * *
53305385 CGACT-TGTGTTTACGTGTAAGACC-CTATCTGAGACAG-TGGCGT
1 CGA-TATGTG-TTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
*
53305428 CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTG-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
53305471 TGTACGAGTT
Statistics
Matches: 71, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
42 3 0.04
43 62 0.87
44 6 0.08
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (42 bp):
CGATATGTGTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:53306511 original size:47 final size:47
Alignment explanation
Indices: 53306277--53306495 Score: 341
Period size: 47 Copynumber: 4.7 Consensus size: 47
53306267 ATGAGTTGAA
*
53306277 CCAATTTGTTATATATATGCTGTCCAATTTTGATGCTTAAATGCTGC
1 CCAATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGCTGC
* *
53306324 CCAATTTGTTACATATATGCTGTCCAATTTCGATGCTTAAGTGCTGC
1 CCAATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGCTGC
* * *
53306371 CTACA-TTGTTACATATATGCTATCTAATTTTGATGCTTAAATGCTGC
1 CCA-ATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGCTGC
* *
53306418 CCAAATTGTTACATATATACTGTCCAATTTTGATGCTTAAATGCTGC
1 CCAATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGCTGC
*
53306465 CCAATTTGTTACATATATGCTGTCCAGTTTT
1 CCAATTTGTTACATATATGCTGTCCAATTTT
53306496 TGTGTAAAAA
Statistics
Matches: 155, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 153 0.99
48 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (47 bp):
CCAATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGCTGC
Found at i:53306528 original size:94 final size:94
Alignment explanation
Indices: 53306277--53306538 Score: 341
Period size: 94 Copynumber: 2.8 Consensus size: 94
53306267 ATGAGTTGAA
* *
53306277 CCAATTTGTTATATATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATAT
1 CCAATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAAATTGTTACATATAT
*
53306342 GCTGTCCAATTTCGATGCTTAAGTGCTGC
66 GCTGTCCAATTTCGATGCTTAAATGCTGC
* * *
53306371 CTACA-TTGTTACATATATGCTATCTAATTTTGATGCTTAAATGCTGCCCAAATTGTTACATATA
1 CCA-ATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAAATTGTTACATATA
* *
53306435 TACTGTCCAATTTTGATGCTTAAATGCTGC
65 TGCTGTCCAATTTCGATGCTTAAATGCTGC
* * * * **
53306465 CCAATTTGTTACATATATGCTGTCCAGTTTTTG-TG-TAAAAATGCTGCTCAAACTGTTGTATAT
1 CCAATTTGTTACATATATGCTGTCCA-ATTTTGATGCT-TAAATGCTGCCCAAATTGTTACATAT
*
53306528 ATGCTGCCCAA
64 ATGCTGTCCAA
53306539 ATTGTTGTAT
Statistics
Matches: 145, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
93 2 0.01
94 137 0.94
95 6 0.04
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.40
Consensus pattern (94 bp):
CCAATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAAATTGTTACATATAT
GCTGTCCAATTTCGATGCTTAAATGCTGC
Found at i:53306554 original size:70 final size:70
Alignment explanation
Indices: 53306457--53306634 Score: 173
Period size: 71 Copynumber: 2.5 Consensus size: 70
53306447 TTGATGCTTA
* ** * * *
53306457 AATGCTGCCCAATTTGTTACATATATGCTGTCC-AGTTTTTGTGTAAAAATGCTGCTCAAACTGT
1 AATGCTGCCCAAATTGTTGTATATATGCTATCCAAATTTTGGTGTAAAAATGCTG-TCAAA-T-T
53306521 T-GTATAT
63 TGGTATAT
* * *
53306528 -ATGCTGCCCAAATTGTTGTATTTATGCTATCCAAATTTTGGTGTGAAAATGCTGTCTAATTTGG
1 AATGCTGCCCAAATTGTTGTATATATGCTATCCAAATTTTGGTGTAAAAATGCTGTCAAATTTGG
53306592 TATAT
66 TATAT
* * * * *
53306597 AAATGCTGTCCAAATTGATGTATAAAAGCTGTCCAAAT
1 -AATGCTGCCCAAATTGTTGTATATATGCTATCCAAAT
53306635 AGGGTAGATT
Statistics
Matches: 88, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
68 2 0.02
69 7 0.08
70 31 0.35
71 48 0.55
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (70 bp):
AATGCTGCCCAAATTGTTGTATATATGCTATCCAAATTTTGGTGTAAAAATGCTGTCAAATTTGG
TATAT
Found at i:53306589 original size:24 final size:23
Alignment explanation
Indices: 53306574--53306629 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
53306564 TTTGGTGTGA
53306574 AAATGCTGTCTAATTTGGTATAT
1 AAATGCTGTCTAATTTGGTATAT
* * * *
53306597 AAATGCTGTCCAAATTGATGTAT
1 AAATGCTGTCTAATTTGGTATAT
*
53306620 AAAAGCTGTC
1 AAATGCTGTC
53306630 CAAATAGGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (23 bp):
AAATGCTGTCTAATTTGGTATAT
Found at i:53312947 original size:34 final size:33
Alignment explanation
Indices: 53312869--53312950 Score: 94
Period size: 34 Copynumber: 2.5 Consensus size: 33
53312859 TTTTAAAAAA
* * **
53312869 TAAATTATGGTTTAGTGTTTTTTTAAAATTAAT
1 TAAATTAGGGTTTAGAGTTTTAATAAAATTAAT
*
53312902 T-AATTCGGGGTTTAGAGTTTGTAATAAAATTAAT
1 TAAATT-AGGGTTTAGAGTTT-TAATAAAATTAAT
53312936 TAAATTAGGGTTTAG
1 TAAATTAGGGTTTAG
53312951 TTTTTTTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
32 4 0.10
33 12 0.30
34 20 0.50
35 4 0.10
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.46
Consensus pattern (33 bp):
TAAATTAGGGTTTAGAGTTTTAATAAAATTAAT
Found at i:53313216 original size:126 final size:125
Alignment explanation
Indices: 53313015--53313276 Score: 445
Period size: 126 Copynumber: 2.1 Consensus size: 125
53313005 CAATAACGAT
* * *
53313015 TCTTTTTCTATTTTAGTCTTGAAAAAATTATTTTGAGAAGACAGTTCTGAACAAATAGTGTCAAA
1 TCTTTTTCTACTGTAGTCTTGAAAAAATAATTTTGAGAAGACAGTTCTGAACAAATAGTGTCAAA
*
53313080 AACGCTTCAAGCAGGATTG-ACTGTCAACAAAATTGATGAAAAAAGCTCCCACGTGGACGC
66 AACGCTTCAAGCAGGA-TGCACTATCAACAAAATTGATGAAAAAAGCTCCCACGTGGACGC
*
53313140 TCTTTTTCTACTGTAGTTCTTGAAAAAATAATTTTGAGAAGACTGTTCTGAACAAATAGTGTCAA
1 TCTTTTTCTACTGTAG-TCTTGAAAAAATAATTTTGAGAAGACAGTTCTGAACAAATAGTGTCAA
*
53313205 AAACGCTTCAAGCAGGATGCACTATCAGCAAAATTGATGAAAAAAGCTCCCACGTGGACGC
65 AAACGCTTCAAGCAGGATGCACTATCAACAAAATTGATGAAAAAAGCTCCCACGTGGACGC
53313266 TCTTTTTCTAC
1 TCTTTTTCTAC
53313277 AATAGTTCCT
Statistics
Matches: 129, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
125 16 0.12
126 113 0.88
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (125 bp):
TCTTTTTCTACTGTAGTCTTGAAAAAATAATTTTGAGAAGACAGTTCTGAACAAATAGTGTCAAA
AACGCTTCAAGCAGGATGCACTATCAACAAAATTGATGAAAAAAGCTCCCACGTGGACGC
Found at i:53316588 original size:24 final size:24
Alignment explanation
Indices: 53316561--53316606 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
53316551 GTTGCTCCGA
53316561 TTGTGGGTGTT-GGAAGGATGACGG
1 TTGTGGGTGTTAGG-AGGATGACGG
53316585 TTGTGGGTGTTAGGAGGATGAC
1 TTGTGGGTGTTAGGAGGATGAC
53316607 CCACATTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.17, C:0.04, G:0.48, T:0.30
Consensus pattern (24 bp):
TTGTGGGTGTTAGGAGGATGACGG
Found at i:53318811 original size:30 final size:30
Alignment explanation
Indices: 53318777--53318845 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
53318767 ATTAATTAAA
53318777 GAGAGTTTTGAGAAATTTAAGGAAAAATTT
1 GAGAGTTTTGAGAAATTTAAGGAAAAATTT
* * *
53318807 GAGAGCTTTGAGAAATTTAGGGAGAAATTT
1 GAGAGTTTTGAGAAATTTAAGGAAAAATTT
53318837 GAGAGTTTT
1 GAGAGTTTT
53318846 TTTGCCAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.38, C:0.01, G:0.28, T:0.33
Consensus pattern (30 bp):
GAGAGTTTTGAGAAATTTAAGGAAAAATTT
Found at i:53319657 original size:31 final size:29
Alignment explanation
Indices: 53319622--53319696 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
53319612 AATATCAAAA
* *
53319622 TTATATATAAATTTTGGTTTAATGTGCAATT
1 TTATACATAAATTTTGATTT--TGTGCAATT
* *
53319653 TTATACATGAACTTTGATTTTGTGCAATT
1 TTATACATAAATTTTGATTTTGTGCAATT
53319682 TTATACATGAAATTT
1 TTATACAT-AAATTT
53319697 GAACTTTTCC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 17 0.46
30 4 0.11
31 16 0.43
ACGTcount: A:0.32, C:0.07, G:0.12, T:0.49
Consensus pattern (29 bp):
TTATACATAAATTTTGATTTTGTGCAATT
Found at i:53319709 original size:29 final size:29
Alignment explanation
Indices: 53319648--53319710 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
53319638 GTTTAATGTG
* * *
53319648 CAATTTTATACATGAACTTTGATTTTGTG
1 CAATTTTATACATGAAATTTGACTTTGTC
53319677 CAATTTTATACATGAAATTTGAACTTT-TC
1 CAATTTTATACATGAAATTTG-ACTTTGTC
53319706 CAATT
1 CAATT
53319711 CTCACAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.46
Consensus pattern (29 bp):
CAATTTTATACATGAAATTTGACTTTGTC
Found at i:53320370 original size:10 final size:10
Alignment explanation
Indices: 53320355--53320394 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
53320345 AAGGAAGTAT
53320355 TTTTAAAATA
1 TTTTAAAATA
53320365 TTTTAAAAGTA
1 TTTTAAAA-TA
* *
53320376 TGTAAAAATA
1 TTTTAAAATA
53320386 TTTTAAAAT
1 TTTTAAAAT
53320395 TAAAAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (10 bp):
TTTTAAAATA
Found at i:53320403 original size:19 final size:21
Alignment explanation
Indices: 53320359--53320407 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
53320349 AAGTATTTTT
**
53320359 AAAATATTTTAAAAGTATGTA
1 AAAATATTTTAAAAGTATAAA
53320380 AAAATATTTTAAAA-T-TAAA
1 AAAATATTTTAAAAGTATAAA
53320399 AAAATATTT
1 AAAATATTT
53320408 ATTAAATCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 11 0.42
20 1 0.04
21 14 0.54
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (21 bp):
AAAATATTTTAAAAGTATAAA
Found at i:53323737 original size:46 final size:46
Alignment explanation
Indices: 53323670--53323761 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
53323660 CCGATGAGTG
53323670 ATGGTAGAACTCACTTTTATGTTTTATAGCTCAAGTGCCAAATTAT
1 ATGGTAGAACTCACTTTTATGTTTTATAGCTCAAGTGCCAAATTAT
53323716 ATGGTAGAACTCACTTTTATGTTTTATAGCTCAAGTGCCAAATTAT
1 ATGGTAGAACTCACTTTTATGTTTTATAGCTCAAGTGCCAAATTAT
53323762 CTTAAAATGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (46 bp):
ATGGTAGAACTCACTTTTATGTTTTATAGCTCAAGTGCCAAATTAT
Found at i:53329936 original size:4 final size:4
Alignment explanation
Indices: 53329929--53329955 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
53329919 GACTTTCTTT
53329929 CTTC CTTC CTTC CTTC CTTC CTTC CTT
1 CTTC CTTC CTTC CTTC CTTC CTTC CTT
53329956 TTGCAGATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (4 bp):
CTTC
Found at i:53332886 original size:53 final size:53
Alignment explanation
Indices: 53332829--53332931 Score: 138
Period size: 53 Copynumber: 1.9 Consensus size: 53
53332819 GATTTTCTTC
*
53332829 TCTATTGATTCATTATGGTATTC-TCCCATGATTCTTTGT-GTTTTTCTTTCTCT
1 TCTATTGATTCATTATGGT-TTCTTCCC-TGATTCTCTGTGGTTTTTCTTTCTCT
* * *
53332882 TCTATTGGTTCCTTCTGGTTTCTTCCCTGATTCTCTGTGGTTTTTCTTTC
1 TCTATTGATTCATTATGGTTTCTTCCCTGATTCTCTGTGGTTTTTCTTTC
53332932 CTATGTCCGT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
52 13 0.30
53 31 0.70
ACGTcount: A:0.09, C:0.21, G:0.14, T:0.56
Consensus pattern (53 bp):
TCTATTGATTCATTATGGTTTCTTCCCTGATTCTCTGTGGTTTTTCTTTCTCT
Found at i:53333093 original size:9 final size:9
Alignment explanation
Indices: 53333075--53333141 Score: 57
Period size: 9 Copynumber: 7.3 Consensus size: 9
53333065 TGCAATTAGC
53333075 AAAA-AAAA
1 AAAAGAAAA
53333083 AAAAGAAAA
1 AAAAGAAAA
53333092 AAAA-AAAA
1 AAAAGAAAA
*
53333100 AAAAGAAGA
1 AAAAGAAAA
* *
53333109 AGAAGAAGA
1 AAAAGAAAA
*
53333118 AGAAGAAGAA
1 AAAAGAA-AA
53333128 AGAAAGAAAGA
1 A-AAAGAAA-A
53333139 AAA
1 AAA
53333142 TTGCAATGCA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
8 12 0.24
9 26 0.52
10 5 0.10
11 7 0.14
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:53333093 original size:12 final size:12
Alignment explanation
Indices: 53333076--53333141 Score: 53
Period size: 12 Copynumber: 5.3 Consensus size: 12
53333066 GCAATTAGCA
53333076 AAAAAAAAAAAG
1 AAAAAAAAAAAG
53333088 AAAAAAAAAAA-
1 AAAAAAAAAAAG
53333099 AAAAAGAAGAAGAAG
1 AAAAA-AA-AA-AAG
* * *
53333114 AAGAAGAAGAAG
1 AAAAAAAAAAAG
* *
53333126 AAAGAAAGAAAG
1 AAAAAAAAAAAG
53333138 AAAA
1 AAAA
53333142 TTGCAATGCA
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
11 5 0.12
12 26 0.63
13 3 0.07
14 3 0.07
15 4 0.10
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:53333108 original size:3 final size:3
Alignment explanation
Indices: 53333102--53333127 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
53333092 AAAAAAAAAA
53333102 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
53333128 AGAAAGAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:53345531 original size:25 final size:26
Alignment explanation
Indices: 53345469--53345542 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 26
53345459 ATACATGTAT
*
53345469 GCTCATACAAGCT-ATGAATCGGTAA
1 GCTCACACAAGCTGATGAATCGGTAA
** *
53345494 GCTCACATGAGCTGA-GAATTGGTAA
1 GCTCACACAAGCTGATGAATCGGTAA
* *
53345519 GCTCTCACAAGCTG-TAAATCGGTA
1 GCTCACACAAGCTGATGAATCGGTA
53345543 TGCTTATATG
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (26 bp):
GCTCACACAAGCTGATGAATCGGTAA
Found at i:53346761 original size:16 final size:17
Alignment explanation
Indices: 53346740--53346773 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
53346730 CGATTTCACT
53346740 AAAAACG-GACTATTAC
1 AAAAACGAGACTATTAC
*
53346756 AAAAACGATACTATTAC
1 AAAAACGAGACTATTAC
53346773 A
1 A
53346774 CCACGTTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.53, C:0.18, G:0.09, T:0.21
Consensus pattern (17 bp):
AAAAACGAGACTATTAC
Found at i:53346813 original size:16 final size:16
Alignment explanation
Indices: 53346789--53346826 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
53346779 TTTGGTTCGC
* *
53346789 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
53346805 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
53346821 TGTAAT
1 TGTAAT
53346827 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:53347081 original size:18 final size:17
Alignment explanation
Indices: 53347060--53347094 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
53347050 TTATTATTAA
*
53347060 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
53347078 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
53347095 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:53350694 original size:12 final size:12
Alignment explanation
Indices: 53350677--53350773 Score: 83
Period size: 12 Copynumber: 7.8 Consensus size: 12
53350667 ATACATAGTG
53350677 ACAACTAAGCAA
1 ACAACTAAGCAA
53350689 ACAACTAAGCAA
1 ACAACTAAGCAA
* *
53350701 TATAA--ATG-AA
1 -ACAACTAAGCAA
53350711 ACAACTAAGCAAACTA
1 ACAACTAAGC--A--A
53350727 AGCAACTAAGCAA
1 A-CAACTAAGCAA
53350740 ACAACTAAGCAA
1 ACAACTAAGCAA
*
53350752 ACAAATAAGCAA
1 ACAACTAAGCAA
*
53350764 ACAAATAAGC
1 ACAACTAAGC
53350774 TAACCAGTAT
Statistics
Matches: 71, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
9 3 0.04
10 2 0.03
11 4 0.06
12 44 0.62
13 5 0.07
14 1 0.01
15 1 0.01
16 2 0.03
17 9 0.13
ACGTcount: A:0.59, C:0.21, G:0.09, T:0.11
Consensus pattern (12 bp):
ACAACTAAGCAA
Found at i:53350727 original size:9 final size:9
Alignment explanation
Indices: 53350713--53350741 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
53350703 TAAATGAAAC
53350713 AACTAAGCA
1 AACTAAGCA
53350722 AACTAAGC-
1 AACTAAGCA
53350730 AACTAAGCA
1 AACTAAGCA
53350739 AAC
1 AAC
53350742 AACTAAGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.55, C:0.24, G:0.10, T:0.10
Consensus pattern (9 bp):
AACTAAGCA
Found at i:53352900 original size:78 final size:78
Alignment explanation
Indices: 53352771--53352939 Score: 266
Period size: 78 Copynumber: 2.2 Consensus size: 78
53352761 GTCCTTGAAG
* * *
53352771 AAATTAATTGATTAGCTTTAACATTTGGATTTCCCGAACAACCATTGGAGTGGACTTAGGAGTTA
1 AAATTAATTGATCAGCTTGAACATTTGGAGTTCCCGAACAACCATTGGAGTGGACTTAGGAGTTA
*
53352836 AGCTAAATGAATC
66 AGCTAAATAAATC
* * *
53352849 AAATTAATTGATCAGCTTGGACATTTGGAGTTCCCGAACAGCCATTGGAGTGGACTTAGGAGTTG
1 AAATTAATTGATCAGCTTGAACATTTGGAGTTCCCGAACAACCATTGGAGTGGACTTAGGAGTTA
*
53352914 AGCTGAATAAATC
66 AGCTAAATAAATC
53352927 AAATTAATTGATC
1 AAATTAATTGATC
53352940 GGTCAATGGT
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 83 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (78 bp):
AAATTAATTGATCAGCTTGAACATTTGGAGTTCCCGAACAACCATTGGAGTGGACTTAGGAGTTA
AGCTAAATAAATC
Found at i:53377547 original size:7 final size:7
Alignment explanation
Indices: 53377535--53377716 Score: 68
Period size: 7 Copynumber: 25.7 Consensus size: 7
53377525 ACTAATTAAT
53377535 CTAAACC
1 CTAAACC
53377542 CTAAACTC
1 CTAAAC-C
*
53377550 CTAACCC
1 CTAAACC
*
53377557 CT-ATCTC
1 CTAAAC-C
53377564 CTAAACC
1 CTAAACC
*
53377571 CTAAATC
1 CTAAACC
* *
53377578 ATAAAAC
1 CTAAACC
* *
53377585 ATAAAAC
1 CTAAACC
* *
53377592 ATAAAAC
1 CTAAACC
*
53377599 ATAAACC
1 CTAAACC
*
53377606 ATAAACCC
1 CTAAA-CC
53377614 CT-AACC
1 CTAAACC
*
53377620 CTTAACC
1 CTAAACC
*
53377627 C-CAACC
1 CTAAACC
53377633 CTTAAACC
1 C-TAAACC
*
53377641 ATAAACC
1 CTAAACC
* *
53377648 ATAAATC
1 CTAAACC
*
53377655 ATAAACC
1 CTAAACC
* *
53377662 ATAATCC
1 CTAAACC
53377669 CTAAACC
1 CTAAACC
*
53377676 TTAAA--
1 CTAAACC
*
53377681 ATAGTAACTC
1 CTA--AAC-C
53377691 CTAAACC
1 CTAAACC
*
53377698 TTAAACC
1 CTAAACC
53377705 CTAAACC
1 CTAAACC
53377712 CTAAA
1 CTAAA
53377717 TTATAATGAT
Statistics
Matches: 142, Mismatches: 21, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
5 2 0.01
6 11 0.08
7 109 0.77
8 18 0.13
10 2 0.01
ACGTcount: A:0.46, C:0.33, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:53377634 original size:13 final size:14
Alignment explanation
Indices: 53377609--53377637 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
53377599 ATAAACCATA
53377609 AACCCCTAACCCTT
1 AACCCCTAACCCTT
53377623 AACCCC-AACCCTT
1 AACCCCTAACCCTT
53377636 AA
1 AA
53377638 ACCATAAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.34, C:0.48, G:0.00, T:0.17
Consensus pattern (14 bp):
AACCCCTAACCCTT
Found at i:53378216 original size:40 final size:40
Alignment explanation
Indices: 53378073--53378218 Score: 138
Period size: 40 Copynumber: 3.8 Consensus size: 40
53378063 TAATATCTTT
* * * *
53378073 GCGGCGTTTTTCAAAAGGCTCCGTTAATGGTCGA-C---A
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATA
* * * *
53378109 GCGGCGTTTTTCAAGAAGCGCTGCCAAAGCTCGACCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATA
* * * *
53378149 GCGGCGTTTTTCATAAGGTGCCGCTAATGCTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATA
* *
53378189 GCGGCATTTTTCAAAAAGCGCCACTAATGC
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGC
53378219 CACGGCATTG
Statistics
Matches: 85, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
36 26 0.31
37 1 0.01
40 58 0.68
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.27
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATA
Found at i:53378324 original size:174 final size:173
Alignment explanation
Indices: 53378019--53378366 Score: 416
Period size: 174 Copynumber: 2.0 Consensus size: 173
53378009 CTTTTTGCGC
*
53378019 CATTTTTCAAAAAGCACTGCCACTAAAGCTCACGGCGTTGTGCTTAATATCTTTGCGGCGTTTTT
1 CATTTTTCAAAAAG-ACTGCCACTAAAGCTCACGGCATTGTGCTTAATATCTTTGCGGCGTTTTT
* * ** * * *
53378084 CAAAAGGCTCCGTTAATGGTCGACAGCGGCGTTTTTCAAGAAGCGCTGCCAAAGCTCGACCTATA
65 CAAAAAGCACCGTTAATACTCGACAGCGACGTTTTTCAAGAAGCGCCGCCAAAGCTCAACCTATA
* * * * *
53378149 GCGGCGTTTTTCATAAGGTGCCGCTAATGCTCGATCTATAGCGG
130 GCAGCGTTTTTCAAAAAGCGCCGCTAAAGCTCGATCTATAGCGG
* * *
53378193 CATTTTTCAAAAAG-C-GCCACTAATGC-CACGGCATTGTGCTTAATTTTTTTGCGGCGTTTTTC
1 CATTTTTCAAAAAGACTGCCACTAAAGCTCACGGCATTGTGCTTAATATCTTTGCGGCGTTTTTC
* * * * *
53378255 AAAAAGCACC-TCTAATACTCGACCTAGATCGACGTTTTTTAAGAAGCGCCGCTAATGCTTAATC
66 AAAAAGCACCGT-TAATACTCGA-C-AG--CGACGTTTTTCAAGAAGCGCCGCCAAAGCTCAACC
*
53378319 TATAGCAGCGTTTTTTAAAAAGCGCCGCTAAAGCTCGATCTATAGCGG
126 TATAGCAGCGTTTTTCAAAAAGCGCCGCTAAAGCTCGATCTATAGCGG
53378367 TGTTTTTATC
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
169 1 0.01
170 49 0.33
171 11 0.07
172 3 0.02
174 83 0.56
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (173 bp):
CATTTTTCAAAAAGACTGCCACTAAAGCTCACGGCATTGTGCTTAATATCTTTGCGGCGTTTTTC
AAAAAGCACCGTTAATACTCGACAGCGACGTTTTTCAAGAAGCGCCGCCAAAGCTCAACCTATAG
CAGCGTTTTTCAAAAAGCGCCGCTAAAGCTCGATCTATAGCGG
Found at i:53378331 original size:40 final size:40
Alignment explanation
Indices: 53378287--53378373 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
53378277 CCTAGATCGA
* * *
53378287 CGTTTTTTAAGAAGCGCCGCTAATGCTTAATCTATAGCAG
1 CGTTTTTTAAAAAGCGCCGCTAAAGCTCAATCTATAGCAG
* *
53378327 CGTTTTTTAAAAAGCGCCGCTAAAGCTCGATCTATAGCGG
1 CGTTTTTTAAAAAGCGCCGCTAAAGCTCAATCTATAGCAG
*
53378367 TGTTTTT
1 CGTTTTT
53378374 ATCCAAACGC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (40 bp):
CGTTTTTTAAAAAGCGCCGCTAAAGCTCAATCTATAGCAG
Found at i:53383980 original size:56 final size:56
Alignment explanation
Indices: 53383913--53384024 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
53383903 TTCACATTTT
53383913 TTATTGATAACAATATCGAGACCGATTAAATTAAGACTCAATCAACTACAACTCAA
1 TTATTGATAACAATATCGAGACCGATTAAATTAAGACTCAATCAACTACAACTCAA
*
53383969 TTATTGATAACAATATCGATACCGATTAAATTAAGACTCAATCAACTACAACTCAA
1 TTATTGATAACAATATCGAGACCGATTAAATTAAGACTCAATCAACTACAACTCAA
53384025 AGCAAACAAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.45, C:0.20, G:0.08, T:0.28
Consensus pattern (56 bp):
TTATTGATAACAATATCGAGACCGATTAAATTAAGACTCAATCAACTACAACTCAA
Found at i:53384522 original size:2 final size:2
Alignment explanation
Indices: 53384515--53384539 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
53384505 ACAACATCAC
53384515 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
53384540 GGGAATTCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:53388757 original size:7 final size:7
Alignment explanation
Indices: 53388740--53388771 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
53388730 TTATGCTTTT
53388740 GTAAC-G
1 GTAACGG
53388746 GTAACGG
1 GTAACGG
53388753 GTAACGG
1 GTAACGG
53388760 GTAACGG
1 GTAACGG
53388767 GTAAC
1 GTAAC
53388772 TAACATAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.31, C:0.16, G:0.38, T:0.16
Consensus pattern (7 bp):
GTAACGG
Found at i:53404496 original size:19 final size:18
Alignment explanation
Indices: 53404461--53404496 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
53404451 TGAAATTTAG
*
53404461 GGATTTAAGTGAAAATAT
1 GGATTTAAGTAAAAATAT
53404479 GGATTTAAGTTAAAAATA
1 GGATTTAAG-TAAAAATA
53404497 GGGAGTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.33
Consensus pattern (18 bp):
GGATTTAAGTAAAAATAT
Found at i:53404505 original size:19 final size:18
Alignment explanation
Indices: 53404458--53404505 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
53404448 ATTTGAAATT
*
53404458 TAGGGATTTAAGTGAAAA
1 TAGGGATTTAAGTAAAAA
*
53404476 TATGGATTTAAGTTAAAAA
1 TAGGGATTTAAG-TAAAAA
*
53404495 TAGGGAGTTAA
1 TAGGGATTTAA
53404506 ATTTAGTCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (18 bp):
TAGGGATTTAAGTAAAAA
Found at i:53405136 original size:37 final size:38
Alignment explanation
Indices: 53405045--53405149 Score: 131
Period size: 37 Copynumber: 2.7 Consensus size: 38
53405035 GACTTTAAGT
* **
53405045 CGATGAGACACTGGGTGTTAATTTATTACTTCAGATTTATT
1 CGATGAGACACTGGGTGTCAA--T-TTACTTCAGATTTAAC
* *
53405086 CGATGAGGCACTGGGTGTCAATTTACTTC-GGTTTAAC
1 CGATGAGACACTGGGTGTCAATTTACTTCAGATTTAAC
53405123 CGATGAGACACTGGGTGTCAATTTACT
1 CGATGAGACACTGGGTGTCAATTTACT
53405150 ACTTCGAATT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
37 31 0.53
38 7 0.12
39 1 0.02
41 19 0.33
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAATTTACTTCAGATTTAAC
Found at i:53405166 original size:40 final size:39
Alignment explanation
Indices: 53405045--53405179 Score: 166
Period size: 40 Copynumber: 3.4 Consensus size: 39
53405035 GACTTTAAGT
* *
53405045 CGATGAGACACTGGGTGTTAATTTATTACTTCAGATTTATT
1 CGATGAGACACTGGGTGTCAATTTA-TACTTC-GATTTATC
* * *
53405086 CGATGAGGCACTGGGTGTCAA-TT-TACTTCGGTTTAAC
1 CGATGAGACACTGGGTGTCAATTTATACTTCGATTTATC
*
53405123 CGATGAGACACTGGGTGTCAATTTACTACTTCGAATTATC
1 CGATGAGACACTGGGTGTCAATTTA-TACTTCGATTTATC
*
53405163 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
53405180 CCAAACTGGT
Statistics
Matches: 81, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
37 25 0.31
38 8 0.10
40 29 0.36
41 19 0.23
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTTATACTTCGATTTATC
Found at i:53411303 original size:33 final size:34
Alignment explanation
Indices: 53411228--53411296 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 34
53411218 TCTTTGTCGA
53411228 ACTAATCAAATCAAAATATCAAGTTCCAGTTCAG
1 ACTAATCAAATCAAAATATCAAGTTCCAGTTCAG
53411262 ACTAATCAAATC-AAATATCAAGTTCCAGTTCAG
1 ACTAATCAAATCAAAATATCAAGTTCCAGTTCAG
53411295 AC
1 AC
53411297 ATATCAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 23 0.66
34 12 0.34
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (34 bp):
ACTAATCAAATCAAAATATCAAGTTCCAGTTCAG
Found at i:53419159 original size:63 final size:63
Alignment explanation
Indices: 53419087--53419206 Score: 240
Period size: 63 Copynumber: 1.9 Consensus size: 63
53419077 ATTAAAGTTC
53419087 ATATATAATTGTACATTAAATCAAAGTACATGTATAATTTTAAAATTTATCCCTAAAGAGAAA
1 ATATATAATTGTACATTAAATCAAAGTACATGTATAATTTTAAAATTTATCCCTAAAGAGAAA
53419150 ATATATAATTGTACATTAAATCAAAGTACATGTATAATTTTAAAATTTATCCCTAAA
1 ATATATAATTGTACATTAAATCAAAGTACATGTATAATTTTAAAATTTATCCCTAAA
53419207 AAATTATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (63 bp):
ATATATAATTGTACATTAAATCAAAGTACATGTATAATTTTAAAATTTATCCCTAAAGAGAAA
Found at i:53419186 original size:29 final size:29
Alignment explanation
Indices: 53419061--53419188 Score: 91
Period size: 29 Copynumber: 4.3 Consensus size: 29
53419051 GAGTTCTACG
* * *
53419061 TGTATAATTG--CATCAAATTAAAGTTCA
1 TGTATAATTGTACATTAAATCAAAGTACA
*
53419088 TATATAATTGTACATTAAATCAAAGTACA
1 TGTATAATTGTACATTAAATCAAAGTACA
* * * * *
53419117 TGTATAATTTTAAAATT-TATCCCTAAAGAGAAAA
1 TGTATAATTGT-ACATTAAAT--C--AA-AGTACA
*
53419151 TATATAATTGTACATTAAATCAAAGTACA
1 TGTATAATTGTACATTAAATCAAAGTACA
53419180 TGTATAATT
1 TGTATAATT
53419189 TTAAAATTTA
Statistics
Matches: 75, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
27 9 0.12
29 37 0.49
30 6 0.08
31 1 0.01
32 1 0.01
33 6 0.08
34 15 0.20
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.37
Consensus pattern (29 bp):
TGTATAATTGTACATTAAATCAAAGTACA
Found at i:53419789 original size:34 final size:35
Alignment explanation
Indices: 53419745--53419811 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
53419735 CAGTAAAATA
*
53419745 TTTTCCGTAAAATGATTT-TTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
53419779 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
53419812 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:53422702 original size:22 final size:22
Alignment explanation
Indices: 53422677--53422757 Score: 117
Period size: 22 Copynumber: 3.7 Consensus size: 22
53422667 CATACTTTAT
* *
53422677 TACTAAACCCTCATGGCTAACG
1 TACTAAGCTCTCATGGCTAACG
53422699 TACTAAGCTCTCATGGCTAACG
1 TACTAAGCTCTCATGGCTAACG
** *
53422721 TACTAAGCTCTCATGTTTCACG
1 TACTAAGCTCTCATGGCTAACG
53422743 TACTAAGCTCTCATG
1 TACTAAGCTCTCATG
53422758 AAAAAGTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 54 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (22 bp):
TACTAAGCTCTCATGGCTAACG
Found at i:53427644 original size:3 final size:3
Alignment explanation
Indices: 53427636--53427666 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
53427626 GCTCAATTTT
53427636 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
53427667 AAGTACCAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ATC
Found at i:53432426 original size:21 final size:20
Alignment explanation
Indices: 53432394--53432433 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
53432384 TCTATTATTC
*
53432394 TCTCTTGTTTATTATATAAT
1 TCTCTTGTTTATAATATAAT
53432414 TCTCTTAGTTTATAATATAA
1 TCTCTT-GTTTATAATATAA
53432434 GCTCTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.30, C:0.10, G:0.05, T:0.55
Consensus pattern (20 bp):
TCTCTTGTTTATAATATAAT
Found at i:53432438 original size:20 final size:20
Alignment explanation
Indices: 53432395--53432439 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
53432385 CTATTATTCT
* *
53432395 CTCTTGTTTATTATATAATT
1 CTCTTGTTTATAATATAATG
53432415 CTCTTAGTTTATAATATAA-G
1 CTCTT-GTTTATAATATAATG
53432435 CTCTT
1 CTCTT
53432440 TTTTTTTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (20 bp):
CTCTTGTTTATAATATAATG
Found at i:53436829 original size:22 final size:21
Alignment explanation
Indices: 53436804--53436858 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
53436794 CAAAATAGTG
*
53436804 GCAATATAATAGCAAAATGACA
1 GCAA-ATAACAGCAAAATGACA
* *
53436826 GCAAATCAACATCAAAATGGCA
1 GCAAAT-AACAGCAAAATGACA
53436848 GCAAAATAACA
1 GC-AAATAACA
53436859 ACGAAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 2 0.07
22 22 0.79
23 4 0.14
ACGTcount: A:0.55, C:0.18, G:0.13, T:0.15
Consensus pattern (21 bp):
GCAAATAACAGCAAAATGACA
Found at i:53437532 original size:40 final size:40
Alignment explanation
Indices: 53437488--53437571 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
53437478 CCCTAAATTC
*
53437488 AAAATAATATTAAAGTGGTAATTTTTTATTTGAATATAGT
1 AAAATAATATTAAAGTGCTAATTTTTTATTTGAATATAGT
53437528 AAAATAATATTAAAGTGCTAATTTTTTATTTGAATATAGT
1 AAAATAATATTAAAGTGCTAATTTTTTATTTGAATATAGT
53437568 AAAA
1 AAAA
53437572 ATTGAGATTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.45, C:0.01, G:0.11, T:0.43
Consensus pattern (40 bp):
AAAATAATATTAAAGTGCTAATTTTTTATTTGAATATAGT
Found at i:53443561 original size:19 final size:20
Alignment explanation
Indices: 53443517--53443562 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
53443507 ATTATTGTTA
*
53443517 GACTGACAATTGAATCGATT
1 GACTGAAAATTGAATCGATT
53443537 GAACTGAAAATTG-AT-GATTT
1 G-ACTGAAAATTGAATCGA-TT
53443557 GACTGA
1 GACTGA
53443563 TTAGATCACC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 7 0.30
20 6 0.26
21 10 0.43
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (20 bp):
GACTGAAAATTGAATCGATT
Found at i:53447336 original size:16 final size:17
Alignment explanation
Indices: 53447303--53447336 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
53447293 GGACACGTAT
53447303 CTAAGCTACAGTCAAGCC
1 CTAAGCTACAG-CAAGCC
53447321 CTAAGCTACA-CAAGCC
1 CTAAGCTACAGCAAGCC
53447337 AAGCTCTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
18 10 0.62
ACGTcount: A:0.35, C:0.35, G:0.15, T:0.15
Consensus pattern (17 bp):
CTAAGCTACAGCAAGCC
Found at i:53452689 original size:39 final size:42
Alignment explanation
Indices: 53452619--53452698 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
53452609 AGTTAATTAC
* *
53452619 AAAAAAAAATTTAATTATATAGTTTCCATGTGAGT-ATTTTTT
1 AAAAAAAAATTTAA-TATATACTTTCAATGTGAGTCATTTTTT
*
53452661 AAAAAAAAATTTAA-AT-TACTTTGAATGTGAGTCATTTT
1 AAAAAAAAATTTAATATATACTTTCAATGTGAGTCATTTT
53452699 GAGTTATTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 13 0.38
40 7 0.21
42 14 0.41
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.42
Consensus pattern (42 bp):
AAAAAAAAATTTAATATATACTTTCAATGTGAGTCATTTTTT
Found at i:53454333 original size:9 final size:9
Alignment explanation
Indices: 53454319--53454352 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
53454309 CCAACGTTTT
53454319 TATTTATTC
1 TATTTATTC
53454328 TATTTATTC
1 TATTTATTC
53454337 TATTTATTC
1 TATTTATTC
53454346 T-TTTATT
1 TATTTATT
53454353 TTCATTCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 6 0.24
9 19 0.76
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.71
Consensus pattern (9 bp):
TATTTATTC
Found at i:53454941 original size:29 final size:28
Alignment explanation
Indices: 53454888--53454942 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
53454878 TTTTAAATCC
* *
53454888 CCCCATTTTTCGTTTTTAATTCAATTTA
1 CCCCATTTTTAGTTTTTAATACAATTTA
53454916 CCCCATTTTTTAGTTTTT-ATCACAATT
1 CCCCA-TTTTTAGTTTTTAAT-ACAATT
53454943 ACACCATACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.22, C:0.22, G:0.04, T:0.53
Consensus pattern (28 bp):
CCCCATTTTTAGTTTTTAATACAATTTA
Found at i:53456325 original size:24 final size:24
Alignment explanation
Indices: 53456297--53456348 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
53456287 TTAGTAAGTC
* *
53456297 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
53456321 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
53456345 AAAT
1 AAAT
53456349 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:53459149 original size:45 final size:46
Alignment explanation
Indices: 53459054--53459151 Score: 171
Period size: 46 Copynumber: 2.2 Consensus size: 46
53459044 TGTGTATATC
* *
53459054 TATTTTCTTTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAA
1 TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
53459100 TATTTTGTTTTAATTAGGAGATTAGATGCT-AAGTTTAAGAGATAA
1 TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
53459145 TATTTTG
1 TATTTTG
53459152 GTTTCTATCT
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 21 0.42
46 29 0.58
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.44
Consensus pattern (46 bp):
TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
Found at i:53463810 original size:45 final size:46
Alignment explanation
Indices: 53463715--53463812 Score: 171
Period size: 46 Copynumber: 2.2 Consensus size: 46
53463705 TGTGTATATC
* *
53463715 TATTTTCTTTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAA
1 TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
53463761 TATTTTGTTTTAATTAGGAGATTAGATGCT-AAGTTTAAGAGATAA
1 TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
53463806 TATTTTG
1 TATTTTG
53463813 GTTTCTATCT
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 21 0.42
46 29 0.58
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.44
Consensus pattern (46 bp):
TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
Found at i:53464819 original size:16 final size:17
Alignment explanation
Indices: 53464790--53464821 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
53464780 TTTTAACTTT
53464790 TTTTTTCCATTCTCTTC
1 TTTTTTCCATTCTCTTC
53464807 TTTTTTCCA-TCTCTT
1 TTTTTTCCATTCTCTT
53464822 TTAATTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.06, C:0.28, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTTCCATTCTCTTC
Found at i:53465779 original size:12 final size:12
Alignment explanation
Indices: 53465764--53465789 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
53465754 TTTTTATGAC
53465764 TTTTTGTTATAA
1 TTTTTGTTATAA
53465776 TTTTTGTTATAA
1 TTTTTGTTATAA
53465788 TT
1 TT
53465790 ATTATGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTTTTGTTATAA
Found at i:53473438 original size:23 final size:22
Alignment explanation
Indices: 53473389--53473442 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
53473379 AATTACCTAA
* *
53473389 AATTTTTAAATATTTTTTTACT
1 AATTTTCAAATATTTTTTTAAT
53473411 AATTTTCAATATATATTTTTTAAT
1 AATTTTCAA-ATAT-TTTTTTAAT
53473435 -ATTTTCAA
1 AATTTTCAA
53473443 GTACTAACGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 8 0.29
23 12 0.43
24 8 0.29
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (22 bp):
AATTTTCAAATATTTTTTTAAT
Found at i:53474716 original size:32 final size:32
Alignment explanation
Indices: 53474677--53474753 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
53474667 AAAATACGAT
*
53474677 AATTAAAAAAAATTAATAGTA-TTATTTAAAA
1 AATTAAAAAAAATTAAAAGTATTTATTTAAAA
* * *
53474708 AATGT-AAAAAATTTAAAAGTATTTTTTTATAA
1 AAT-TAAAAAAAATTAAAAGTATTTATTTAAAA
*
53474740 AATTACAAAAAATT
1 AATTAAAAAAAATT
53474754 TTAAAACATA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
31 18 0.49
32 19 0.51
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.38
Consensus pattern (32 bp):
AATTAAAAAAAATTAAAAGTATTTATTTAAAA
Found at i:53475102 original size:15 final size:15
Alignment explanation
Indices: 53475065--53475118 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
53475055 AAAGTCAAAA
53475065 ATAAT-TTTAATATTT
1 ATAATATTTAAT-TTT
*
53475080 A-AACATTTAATTTT
1 ATAATATTTAATTTT
*
53475094 ATAATATTTTATTTT
1 ATAATATTTAATTTT
*
53475109 TTAA-ATTTAA
1 ATAATATTTAA
53475119 ATTTCATATT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
14 11 0.34
15 21 0.66
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (15 bp):
ATAATATTTAATTTT
Found at i:53483622 original size:32 final size:32
Alignment explanation
Indices: 53483568--53483634 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
53483558 TAGTATATTC
* * * *
53483568 AAATTATATGCAATCACGTAATGTTTTTCCCG
1 AAATTATATACAACCACATAATGTTTTACCCG
53483600 AAATTATATACAACCACATAATGTTTTACCCG
1 AAATTATATACAACCACATAATGTTTTACCCG
53483632 AAA
1 AAA
53483635 AGTTAATGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (32 bp):
AAATTATATACAACCACATAATGTTTTACCCG
Found at i:53484643 original size:23 final size:24
Alignment explanation
Indices: 53484597--53484643 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
53484587 ATTTGGATAC
*
53484597 ATATATATATTTAATAATTTTTAAA
1 ATATATATATTTAATAA-TGTTAAA
*
53484622 ATATATATATTTGATAA-GTTAA
1 ATATATATATTTAATAATGTTAA
53484644 TAGATAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
25 16 0.80
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (24 bp):
ATATATATATTTAATAATGTTAAA
Found at i:53490243 original size:31 final size:31
Alignment explanation
Indices: 53490204--53490275 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
53490194 TTTGGGTCAA
* *
53490204 GACT-AAATT-TTAAAGTTCAAAAAGTACATG
1 GACTAAAATTATTAAA-TTCAAAAAATACAAG
*
53490234 GACTAAAATTATTCAATTCAAAAAATACAAG
1 GACTAAAATTATTAAATTCAAAAAATACAAG
53490265 GACTAAAATTA
1 GACTAAAATTA
53490276 ATTAGATAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 4 0.11
31 29 0.78
32 4 0.11
ACGTcount: A:0.51, C:0.11, G:0.10, T:0.28
Consensus pattern (31 bp):
GACTAAAATTATTAAATTCAAAAAATACAAG
Found at i:53493500 original size:3 final size:3
Alignment explanation
Indices: 53493492--53493522 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
53493482 TTCCATCACC
53493492 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
53493523 AACTTAGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:53507312 original size:46 final size:46
Alignment explanation
Indices: 53507202--53507364 Score: 262
Period size: 46 Copynumber: 3.6 Consensus size: 46
53507192 CTTACGTATG
* *
53507202 ATCACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
* *
53507245 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGTT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
53507291 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
53507337 ATCACTTATCACTTTGTCAC-TGATCAGA
1 ATCACTTATCACTTTGTCACTTGATCAGA
53507365 AGTACTCAAA
Statistics
Matches: 111, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
43 11 0.10
44 5 0.05
45 28 0.25
46 67 0.60
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.34
Consensus pattern (46 bp):
ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
Found at i:53512656 original size:2 final size:2
Alignment explanation
Indices: 53512649--53512682 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
53512639 ATTACTCGCA
53512649 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
53512683 GCAAATTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:53513004 original size:20 final size:20
Alignment explanation
Indices: 53512975--53513047 Score: 53
Period size: 20 Copynumber: 3.7 Consensus size: 20
53512965 GTTTATTTAA
*
53512975 AAAAACTATTAAAATATTAT
1 AAAAATTATTAAAATATTAT
* *
53512995 AAAAATTATTGAAACT-TGAT
1 AAAAATTATT-AAAATATTAT
* * *
53513015 GAAAACTT-TAAAAAAATTAT
1 -AAAAATTATTAAAATATTAT
53513035 AAAAA-TATTAAAA
1 AAAAATTATTAAAA
53513048 CTTTTAGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 9
0.67 0.17 0.16
Matches are distributed among these distances:
18 1 0.03
19 12 0.31
20 16 0.41
21 10 0.26
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (20 bp):
AAAAATTATTAAAATATTAT
Found at i:53514730 original size:7 final size:7
Alignment explanation
Indices: 53514718--53514752 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
53514708 AAGTCAAGGT
53514718 TGGCAAA
1 TGGCAAA
53514725 TGGCAAA
1 TGGCAAA
53514732 TGGCAAA
1 TGGCAAA
53514739 TGGCAAA
1 TGGCAAA
53514746 CTGGCAA
1 -TGGCAA
53514753 TGATATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.78
8 6 0.22
ACGTcount: A:0.40, C:0.17, G:0.29, T:0.14
Consensus pattern (7 bp):
TGGCAAA
Found at i:53515825 original size:10 final size:11
Alignment explanation
Indices: 53515803--53515827 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
53515793 ATGACATGGC
53515803 TTGTTCTTTTT
1 TTGTTCTTTTT
53515814 TTGTTCTTTTT
1 TTGTTCTTTTT
53515825 TTG
1 TTG
53515828 GTTAACTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.12, T:0.80
Consensus pattern (11 bp):
TTGTTCTTTTT
Found at i:53532295 original size:2 final size:2
Alignment explanation
Indices: 53532290--53532315 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
53532280 ACACACCTAA
53532290 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
53532316 TTGTACGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:53536981 original size:6 final size:6
Alignment explanation
Indices: 53536970--53536996 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
53536960 TATTATTTAT
53536970 TTTAAA TTTAAA TTTAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT
53536997 TTAAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:53545743 original size:160 final size:160
Alignment explanation
Indices: 53545479--53545798 Score: 586
Period size: 160 Copynumber: 2.0 Consensus size: 160
53545469 AGTTCCCAGT
* *
53545479 GATTGATGTTATCAGGACTCTAGCTTTGCAGCTTAGCAAAATATTTTTGAGAGGTTTAGTAAGAG
1 GATTGATGTTATCAAGACTCTAGCTTTGCAGCTTAGCAAAATATTTTTGAGAGGTTTAGGAAGAG
* *
53545544 ATTTTGAAGCTATGCTGTGAATGCCGAAATAGTTATTTCATCTTATATCTGTTTATATCCTGTAT
66 ATTTTGAAGCTATGCTGTGAATGCCGAAATAGTTATTTCATCTTACATCTGTTTATATCCTGTAC
*
53545609 ACAAAACTTGAATATAAACAATCACTATCG
131 ACAAAACTTAAATATAAACAATCACTATCG
53545639 GATTGATGTTATCAAGACTCTAGCTTTGCAGCTTAGCAAAATATTTTTGAGAGGTTTAGGAAGAG
1 GATTGATGTTATCAAGACTCTAGCTTTGCAGCTTAGCAAAATATTTTTGAGAGGTTTAGGAAGAG
53545704 ATTTTGAAGCTATGCTGTGAATGCCGAAATAGTTATTTCATCTTACATCTGTTTATATCCTGTAC
66 ATTTTGAAGCTATGCTGTGAATGCCGAAATAGTTATTTCATCTTACATCTGTTTATATCCTGTAC
*
53545769 ACAAAACTTAAATATAAATAATCACTATCG
131 ACAAAACTTAAATATAAACAATCACTATCG
53545799 CCTCCAAAAT
Statistics
Matches: 154, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
160 154 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (160 bp):
GATTGATGTTATCAAGACTCTAGCTTTGCAGCTTAGCAAAATATTTTTGAGAGGTTTAGGAAGAG
ATTTTGAAGCTATGCTGTGAATGCCGAAATAGTTATTTCATCTTACATCTGTTTATATCCTGTAC
ACAAAACTTAAATATAAACAATCACTATCG
Done.